Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	D	E	M	K	G	K	S	G	K	V	K	V	M	Y	V	R	S	D	D	D	S	D	K	R	T	H	N	P	R	T	G	K	G	G	G	R	P	G	K	S	R	A	D	G	G	R	R	P	A	R	D	D	K	Q	S	Q	P	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	R	K	W	E	D	S	P	W	R	T	V	S	R	A	P	G	D	E	T	P	E	K	A	D	H	G	G	I	S	G	K	S	F	I	D	P	E	V	L	R	R	Q	R	A	E	E	T	R	V	Y	G	E	N	A	C	Q	A	L	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	S	R	P	E	A	I	V	R	A	W	F	I	Q	S	V	T	P	R	F	K	E	A	L	R	W	M	A	A	N	R	K	A	Y	H	V	V	D	E	A	E	L	T	K	A	S	G	T	E	H	H	G	G	V	C	F	L	I	K	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	N	G	T	T	V	Q	Q	W	V	S	Q	A	G	A	Q	D	C	V	L	A	L	E	N	E	S	N	P	H	N	L	G	G	M	M	R	S	C	A	H	F	G	V	K	G	V	V	V	Q	D	A	A	L	L	E	S	G	A	A	I
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	T	A	E	G	G	A	E	H	V	Q	P	I	T	G	D	N	I	V	N	V	L	D	D	F	R	Q	A	G	Y	T	V	V	T	T	S	S	E	Q	G	K	P	L	F	K	T	S	L	P	A	K	M	V	L	V	L	G	Q	E	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Sequence		E	G	L	P	D	A	A	R	D	P	N	D	L	R	V	K	I	D	G	T	G	N	V	A	G	L	N	I	S	V	A	T	G	V	L	L	G	E	W	W	R	Q	N	K	A
Secondary structure
SS confidence
Disorder																																												?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3gyq chain B Region: 99 - 345 Aligned: 241 Modelled: 241 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase; PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex Phyre2 PDB 1ipa chain A Region: 102 - 344 Aligned: 235 Modelled: 235 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase; PDBTitle: crystal structure of rna 2'-o ribose methyltransferase Phyre2 PDB 1x7p chain B Region: 102 - 343 Aligned: 228 Modelled: 228 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet Phyre2 PDB 2i6d chain A Region: 102 - 343 Aligned: 228 Modelled: 223 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:rna methyltransferase, trmh family; PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis. Phyre2 PDB 1gz0 chain A domain 1 Region: 179 - 343 Aligned: 164 Modelled: 164 Confidence: 100.0% Identity: 30% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 1gz0 chain G Region: 179 - 343 Aligned: 164 Modelled: 157 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh; PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb Phyre2 PDB 1ipa chain A domain 1 Region: 192 - 344 Aligned: 152 Modelled: 152 Confidence: 100.0% Identity: 26% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 1zjr chain A Region: 186 - 344 Aligned: 158 Modelled: 158 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase; PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme Phyre2 PDB 1v2x chain A Region: 186 - 344 Aligned: 157 Modelled: 157 Confidence: 100.0% Identity: 25% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 2ha8 chain A Region: 194 - 344 Aligned: 151 Modelled: 151 Confidence: 100.0% Identity: 24% PDB header:rna binding protein Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein; PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1 Phyre2 PDB 1mxi chain A Region: 198 - 343 Aligned: 144 Modelled: 144 Confidence: 100.0% Identity: 20% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 3onp chain A Region: 197 - 342 Aligned: 146 Modelled: 141 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:trna/rrna methyltransferase (spou); PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides Phyre2 PDB 3ic6 chain A Region: 196 - 345 Aligned: 150 Modelled: 148 Confidence: 100.0% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative methylase family protein; PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae Phyre2 PDB 3e5y chain B Region: 198 - 344 Aligned: 133 Modelled: 133 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:trmh family rna methyltransferase; PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei Phyre2 PDB 3l8u chain A Region: 200 - 344 Aligned: 138 Modelled: 138 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:putative rrna methylase; PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159 Phyre2 PDB 3kty chain A Region: 196 - 342 Aligned: 146 Modelled: 147 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:probable methyltransferase; PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i Phyre2 PDB 3ilk chain B Region: 198 - 342 Aligned: 141 Modelled: 143 Confidence: 100.0% Identity: 16% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380; PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20 Phyre2 PDB 3dcm chain X Region: 201 - 343 Aligned: 143 Modelled: 143 Confidence: 99.9% Identity: 19% PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine Phyre2 PDB 1gz0 chain F domain 2 Region: 100 - 180 Aligned: 81 Modelled: 81 Confidence: 99.8% Identity: 19% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: RNA 2'-O ribose methyltransferase substrate binding domain Phyre2 PDB 1gz0 chain A domain 2 Region: 107 - 180 Aligned: 74 Modelled: 74 Confidence: 99.7% Identity: 19% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: RNA 2'-O ribose methyltransferase substrate binding domain Phyre2 1 c3gyqB_ 2 c1ipaA_ 3 c1x7pB_ 4 c2i6dA_ 5 d1gz0a1 6 c1gz0G_ 7 d1ipaa1 8 c1zjrA_ 9 d1v2xa_ 10 c2ha8A_ 11 d1mxia_ 12 c3onpA_ 13 c3ic6A_ 14 c3e5yB_ 15 c3l8uA_ 16 c3ktyA_ 17 c3ilkB_ 18 c3dcmX_ 19 d1gz0f2 20 d1gz0a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3gyqB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase; PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex 2 c1ipaA_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase; PDBTitle: crystal structure of rna 2'-o ribose methyltransferase 3 c1x7pB_ 100.0 21 PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet 4 c2i6dA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:rna methyltransferase, trmh family; PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis. 5 d1gz0a1 100.0 30 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 6 c1gz0G_ 100.0 30 PDB header:transferase Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh; PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb 7 d1ipaa1 100.0 26 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 8 c1zjrA_ 100.0 26 PDB header:transferase Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase; PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme 9 d1v2xa_ 100.0 25 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 10 c2ha8A_ 100.0 24 PDB header:rna binding protein Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein; PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1 11 d1mxia_ 100.0 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 12 c3onpA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:trna/rrna methyltransferase (spou); PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides 13 c3ic6A_ 100.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative methylase family protein; PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae 14 c3e5yB_ 100.0 20 PDB header:transferase Chain: B: PDB Molecule:trmh family rna methyltransferase; PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei 15 c3l8uA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:putative rrna methylase; PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159 16 c3ktyA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:probable methyltransferase; PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i 17 c3ilkB_ 100.0 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380; PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20 18 c3dcmX_ 99.9 19 PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine 19 d1gz0f2 99.8 19 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 20 d1gz0a2 99.7 19 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 21 d1ipaa2 not modelled 98.6 18 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 22 c2yy8B_ not modelled 97.0 15 PDB header:transferase Chain: B: PDB Molecule:upf0106 protein ph0461; PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine 23 d2o3aa1 not modelled 96.5 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like 24 d1vhka2 not modelled 96.5 10 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 25 c4a1dG_ not modelled 96.1 14 PDB header:ribosome Chain: G: PDB Molecule:rpl30; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4. 26 c1vhyB_ not modelled 95.7 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein hi0303; PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558 27 d2bo1a1 not modelled 95.5 13 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 28 d1t0kb_ not modelled 95.3 13 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 29 c3cpqB_ not modelled 95.2 6 PDB header:ribosomal protein Chain: B: PDB Molecule:50s ribosomal protein l30e; PDBTitle: crystal structure of l30e a ribosomal protein from2 methanocaldococcus jannaschii dsm2661 (mj1044) 30 d1w41a1 not modelled 95.1 10 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 31 c3on1A_ not modelled 95.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2414 protein; PDBTitle: the structure of a protein with unknown function from bacillus2 halodurans c 32 d1vqof1 not modelled 94.8 11 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 33 c2zkr6_ not modelled 94.6 14 PDB header:ribosomal protein/rna Chain: 6: PDB Molecule:60s ribosomal protein l30e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 34 d1jj2f_ not modelled 94.4 11 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 35 d1nxza2 not modelled 94.4 13 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 36 c2lbwA_ not modelled 94.2 11 PDB header:rna binding protein Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 2; PDBTitle: solution structure of the s. cerevisiae h/aca rnp protein nhp2p-s82w2 mutant 37 d1rlga_ not modelled 94.1 14 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 38 d2fc3a1 not modelled 94.1 14 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 39 c3ai9X_ not modelled 93.8 8 PDB header:transferase Chain: X: PDB Molecule:upf0217 protein mj1640; PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase 40 d1xbia1 not modelled 93.6 13 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 41 c3o85A_ not modelled 93.5 11 PDB header:ribosomal protein Chain: A: PDB Molecule:ribosomal protein l7ae; PDBTitle: giardia lamblia 15.5kd rna binding protein 42 d2czwa1 not modelled 93.4 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 43 c1vhkA_ not modelled 93.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 44 d2aifa1 not modelled 92.6 13 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 45 d2qwva1 not modelled 91.9 9 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 46 d2ozba1 not modelled 91.2 14 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 47 c3kw2A_ not modelled 90.3 11 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 48 d2vgna3 not modelled 90.2 21 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 49 d2qmma1 not modelled 89.6 23 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 50 c2zkrf_ not modelled 89.4 11 PDB header:ribosomal protein/rna Chain: F: PDB Molecule:rna expansion segment es7 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 51 c3iz5H_ not modelled 88.9 12 PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein l7a (l7ae); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 52 d2alea1 not modelled 88.8 10 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 53 d2qi2a3 not modelled 87.9 20 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 54 c2vgmA_ not modelled 87.7 16 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay. 55 c3izcH_ not modelled 87.6 14 PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein rpl8 (l7ae); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 56 c2xznU_ not modelled 86.1 15 PDB header:ribosome Chain: U: PDB Molecule:ribosomal protein l7ae containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 57 c2egwB_ not modelled 85.7 16 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 58 c3agkA_ not modelled 83.9 24 PDB header:translation Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: crystal structure of archaeal translation termination factor, arf1 59 d1dt9a2 not modelled 83.9 9 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 60 c4a1eF_ not modelled 81.0 14 PDB header:ribosome Chain: F: PDB Molecule:rpl7a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 61 c3obwA_ not modelled 80.0 20 PDB header:hydrolase Chain: A: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of two archaeal pelotas reveal inter-domain2 structural plasticity 62 c3agjD_ not modelled 79.9 20 PDB header:translation/hydrolase Chain: D: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 63 c2ktvA_ not modelled 79.8 10 PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: human erf1 c-domain, "open" conformer 64 c3agjB_ not modelled 79.1 20 PDB header:translation/hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex 65 c1ibjC_ not modelled 78.6 10 PDB header:lyase Chain: C: PDB Molecule:cystathionine beta-lyase; PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana 66 d1ibja_ not modelled 78.6 10 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 67 d1x52a1 not modelled 77.9 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 68 c1dt9A_ not modelled 77.2 9 PDB header:translation Chain: A: PDB Molecule:protein (eukaryotic peptide chain release factor PDBTitle: the crystal structure of human eukaryotic release factor2 erf1-mechanism of stop codon recognition and peptidyl-trna3 hydrolysis 69 c2qi2A_ not modelled 76.0 20 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein pelota related protein; PDBTitle: crystal structure of the thermoplasma acidophilum pelota2 protein 70 c3cg6A_ not modelled 74.5 10 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible 45 gamma; PDBTitle: crystal structure of gadd45 gamma 71 c2cx8B_ not modelled 71.8 15 PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah) 72 d1cs1a_ not modelled 68.7 9 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 73 c1t9hA_ not modelled 65.5 17 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 74 c3mcaB_ not modelled 64.7 20 PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay 75 d1k3ra2 not modelled 62.9 23 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 76 c3navB_ not modelled 62.8 11 PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 77 c3obyB_ not modelled 61.5 20 PDB header:hydrolase Chain: B: PDB Molecule:protein pelota homolog; PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity 78 d1o6da_ not modelled 58.1 13 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 79 c4a2iV_ not modelled 55.8 20 PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor 80 c1z85B_ not modelled 53.8 15 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution 81 c3ir9A_ not modelled 53.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: c-terminal domain of peptide chain release factor from2 methanosarcina mazei. 82 d2ctza1 not modelled 50.9 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 83 c2w8wA_ not modelled 50.4 9 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser 84 c2rcnA_ not modelled 48.5 19 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 85 c3u5cM_ not modelled 47.4 14 PDB header:ribosome Chain: M: PDB Molecule:40s ribosomal protein s12; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 86 c2yv5A_ not modelled 46.9 20 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 87 d3eeqa1 not modelled 46.7 15 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 88 c1k3rA_ not modelled 46.1 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 89 d2w6ka1 not modelled 45.8 10 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 90 c2kg4A_ not modelled 44.3 15 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein PDBTitle: three-dimensional structure of human gadd45alpha in2 solution by nmr 91 c3ib6B_ not modelled 43.1 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from listeria2 monocytogenes serotype 4b 92 c3a2bA_ not modelled 42.3 8 PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine 93 c3qjaA_ not modelled 40.2 11 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form 94 c2cb1A_ not modelled 39.8 11 PDB header:lyase Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase; PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2. 95 c1s1iG_ not modelled 38.9 14 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein l8-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 96 d1piia2 not modelled 38.8 10 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 97 c2fq1A_ not modelled 38.8 9 PDB header:hydrolase Chain: A: PDB Molecule:isochorismatase; PDBTitle: crystal structure of the two-domain non-ribosomal peptide synthetase2 entb containing isochorismate lyase and aryl-carrier protein domains 98 c3e20C_ not modelled 38.8 13 PDB header:translation Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: crystal structure of s.pombe erf1/erf3 complex 99 d1to0a_ not modelled 38.2 21 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 100 d1u7pa_ not modelled 36.4 14 Fold:HAD-like Superfamily:HAD-like Family:Magnesium-dependent phosphatase-1, Mdp1 101 d1y4ia1 not modelled 34.5 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 102 c2nmpC_ not modelled 33.9 8 PDB header:lyase Chain: C: PDB Molecule:cystathionine gamma-lyase; PDBTitle: crystal structure of human cystathionine gamma lyase 103 c3qi6B_ not modelled 33.5 11 PDB header:lyase Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs); PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99 104 c3nvtA_ not modelled 33.3 10 PDB header:transferase/isomerase Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase; PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e 105 c2ekcA_ not modelled 30.8 11 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 106 d1j2ra_ not modelled 28.3 15 Fold:Isochorismatase-like hydrolases Superfamily:Isochorismatase-like hydrolases Family:Isochorismatase-like hydrolases 107 c3hqtB_ not modelled 27.5 14 PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa 108 c3gndC_ not modelled 27.2 11 PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate 109 d1qgna_ not modelled 25.8 9 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 110 d2q02a1 not modelled 24.9 11 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 111 c3ndnC_ not modelled 24.9 14 PDB header:lyase Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase; PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate 112 d1bs0a_ not modelled 24.8 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 113 d1ns5a_ not modelled 24.5 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 114 d1vh0a_ not modelled 24.4 22 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 115 c3j09A_ not modelled 24.3 9 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 116 c2c3zA_ not modelled 24.2 10 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus 117 d1ka9h_ not modelled 24.0 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 118 c2b34C_ not modelled 23.1 10 PDB header:hydrolase Chain: C: PDB Molecule:mar1 ribonuclease; PDBTitle: structure of mar1 ribonuclease from caenorhabditis elegans 119 d1ujpa_ not modelled 22.9 19 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 120 c3j08A_ not modelled 22.6 9 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0