Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	I	Y	T	L	S	H	G	S	L	K	L	D	V	S	D	Q	G	G	V	I	E	G	F	W	R	D	T	T	P	L	L	R	P	G	K	K	S	G	V	A	T	D	A	S	C	F	P	L	V	P	F	A	N	R	V	S	G	N
Secondary structure
SS confidence
Disorder		?	?																																						?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	F	V	W	Q	G	R	E	Y	Q	L	Q	P	N	V	E	W	D	A	H	Y	L	H	G	D	G	W	L	G	E	W	Q	C	V	S	H	S	D	D	S	L	C	L	V	Y	E	H	R	S	G	V	Y	H	Y	R	V	S	Q	A	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	L	T	A	D	T	L	T	V	T	L	S	V	T	N	Q	G	A	E	T	L	P	F	G	T	G	W	H	P	Y	F	P	L	S	P	Q	T	R	I	Q	A	Q	A	S	G	Y	W	L	E	R	E	Q	W	L	A	G	E	F	C	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	L	P	Q	E	L	D	F	N	Q	P	A	P	L	P	R	Q	W	V	N	N	G	F	A	G	W	N	G	Q	A	R	I	E	Q	P	Q	E	G	Y	A	I	I	M	E	T	T	P	P	A	P	C	Y	F	I	F	V	S	D	P	A
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Sequence		F	D	K	G	Y	A	F	D	F	F	C	L	E	P	M	S	H	A	P	D	D	H	H	R	P	E	G	G	D	L	I	A	L	A	P	G	E	S	T	T	S	E	M	S	L	R	V	E	W	L
Secondary structure
SS confidence
Disorder		?	?	?	?		?																																												?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3nre chain B Region: 2 - 290 Aligned: 289 Modelled: 289 Confidence: 100.0% Identity: 99% PDB header:isomerase Chain: B: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative aldose 1-epimerase (b2544) from2 escherichia coli k12 at 1.59 a resolution Phyre2 PDB 3os7 chain B Region: 1 - 290 Aligned: 283 Modelled: 289 Confidence: 100.0% Identity: 19% PDB header:isomerase Chain: B: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution Phyre2 PDB 3os7 chain D Region: 1 - 290 Aligned: 283 Modelled: 288 Confidence: 100.0% Identity: 19% PDB header:isomerase Chain: D: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution Phyre2 PDB 1yga chain A Region: 2 - 288 Aligned: 283 Modelled: 287 Confidence: 100.0% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:hypothetical 37.9 kda protein in bio3-hxt17 PDBTitle: crystal structure of saccharomyces cerevisiae yn9a protein,2 new york structural genomics consortium Phyre2 PDB 1z45 chain A domain 1 Region: 2 - 287 Aligned: 283 Modelled: 286 Confidence: 100.0% Identity: 17% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 3mwx chain A Region: 1 - 288 Aligned: 282 Modelled: 288 Confidence: 100.0% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative galactose mutarotase (bsu18360) from2 bacillus subtilis at 1.45 a resolution Phyre2 PDB 3imh chain B Region: 1 - 289 Aligned: 280 Modelled: 289 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: B: PDB Molecule:galactose-1-epimerase; PDBTitle: crystal structure of galactose 1-epimerase from lactobacillus2 acidophilus ncfm Phyre2 PDB 3dcd chain A Region: 4 - 288 Aligned: 270 Modelled: 275 Confidence: 100.0% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: x-ray structure of the galactose mutarotase related enzyme q5fkd7 from2 lactobacillus acidophilus at the resolution 1.9a. northeast3 structural genomics consortium target lar33. Phyre2 PDB 3q1n chain A Region: 3 - 287 Aligned: 270 Modelled: 275 Confidence: 100.0% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: crystal structure of a galactose mutarotase-like protein (lsei_2598)2 from lactobacillus casei atcc 334 at 1.61 a resolution Phyre2 PDB 1so0 chain A Region: 1 - 287 Aligned: 279 Modelled: 283 Confidence: 100.0% Identity: 20% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 1lur chain A Region: 2 - 290 Aligned: 282 Modelled: 288 Confidence: 100.0% Identity: 15% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 1nsz chain A Region: 2 - 289 Aligned: 282 Modelled: 285 Confidence: 100.0% Identity: 16% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 3k25 chain B Region: 4 - 288 Aligned: 258 Modelled: 276 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1438 protein; PDBTitle: crystal structure of slr1438 protein from synechocystis sp. pcc 6803,2 northeast structural genomics consortium target sgr112 Phyre2 PDB 1z45 chain A Region: 2 - 287 Aligned: 281 Modelled: 284 Confidence: 100.0% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:gal10 bifunctional protein; PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces3 cerevisiae complexed with nad, udp-glucose, and galactose Phyre2 PDB 2htb chain B Region: 1 - 288 Aligned: 246 Modelled: 270 Confidence: 100.0% Identity: 15% PDB header:isomerase Chain: B: PDB Molecule:putative enzyme related to aldose 1-epimerase; PDBTitle: crystal structure of a putative mutarotase (yead) from2 salmonella typhimurium in monoclinic form Phyre2 PDB 2cis chain A Region: 1 - 286 Aligned: 254 Modelled: 286 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: A: PDB Molecule:hexose-6-phosphate mutarotase; PDBTitle: structure-based functional annotation: yeast ymr099c codes2 for a d-hexose-6-phosphate mutarotase. complex with3 tagatose-6-phosphate Phyre2 PDB 1jov chain A Region: 1 - 286 Aligned: 237 Modelled: 250 Confidence: 100.0% Identity: 20% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Hypothetical protein HI1317 Phyre2 PDB 3ty1 chain B Region: 1 - 287 Aligned: 269 Modelled: 283 Confidence: 100.0% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:hypothetical aldose 1-epimerase; PDBTitle: crystal structure of a hypothetical aldose 1-epimerase (kpn_04629)2 from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.90 a3 resolution Phyre2 PDB 3bs6 chain B Region: 2 - 145 Aligned: 120 Modelled: 123 Confidence: 97.1% Identity: 16% PDB header:membrane protein, protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: 1.8 angstrom crystal structure of the periplasmic domain of2 the membrane insertase yidc Phyre2 PDB 3blc chain B Region: 2 - 145 Aligned: 128 Modelled: 144 Confidence: 96.4% Identity: 16% PDB header:chaperone,protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: crystal structure of the periplasmic domain of the escherichia coli2 yidc Phyre2 1 c3nreB_ 2 c3os7B_ 3 c3os7D_ 4 c1ygaA_ 5 d1z45a1 6 c3mwxA_ 7 c3imhB_ 8 c3dcdA_ 9 c3q1nA_ 10 d1so0a_ 11 d1lura_ 12 d1nsza_ 13 c3k25B_ 14 c1z45A_ 15 c2htbB_ 16 c2cisA_ 17 d1jova_ 18 c3ty1B_ 19 c3bs6B_ 20 c3blcB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nreB_ 100.0 99 PDB header:isomerase Chain: B: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative aldose 1-epimerase (b2544) from2 escherichia coli k12 at 1.59 a resolution 2 c3os7B_ 100.0 19 PDB header:isomerase Chain: B: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution 3 c3os7D_ 100.0 19 PDB header:isomerase Chain: D: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution 4 c1ygaA_ 100.0 15 PDB header:isomerase Chain: A: PDB Molecule:hypothetical 37.9 kda protein in bio3-hxt17 PDBTitle: crystal structure of saccharomyces cerevisiae yn9a protein,2 new york structural genomics consortium 5 d1z45a1 100.0 17 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 6 c3mwxA_ 100.0 22 PDB header:isomerase Chain: A: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative galactose mutarotase (bsu18360) from2 bacillus subtilis at 1.45 a resolution 7 c3imhB_ 100.0 16 PDB header:isomerase Chain: B: PDB Molecule:galactose-1-epimerase; PDBTitle: crystal structure of galactose 1-epimerase from lactobacillus2 acidophilus ncfm 8 c3dcdA_ 100.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: x-ray structure of the galactose mutarotase related enzyme q5fkd7 from2 lactobacillus acidophilus at the resolution 1.9a. northeast3 structural genomics consortium target lar33. 9 c3q1nA_ 100.0 17 PDB header:isomerase Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: crystal structure of a galactose mutarotase-like protein (lsei_2598)2 from lactobacillus casei atcc 334 at 1.61 a resolution 10 d1so0a_ 100.0 20 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 11 d1lura_ 100.0 15 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 12 d1nsza_ 100.0 16 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 13 c3k25B_ 100.0 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1438 protein; PDBTitle: crystal structure of slr1438 protein from synechocystis sp. pcc 6803,2 northeast structural genomics consortium target sgr112 14 c1z45A_ 100.0 17 PDB header:isomerase Chain: A: PDB Molecule:gal10 bifunctional protein; PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces3 cerevisiae complexed with nad, udp-glucose, and galactose 15 c2htbB_ 100.0 15 PDB header:isomerase Chain: B: PDB Molecule:putative enzyme related to aldose 1-epimerase; PDBTitle: crystal structure of a putative mutarotase (yead) from2 salmonella typhimurium in monoclinic form 16 c2cisA_ 100.0 16 PDB header:isomerase Chain: A: PDB Molecule:hexose-6-phosphate mutarotase; PDBTitle: structure-based functional annotation: yeast ymr099c codes2 for a d-hexose-6-phosphate mutarotase. complex with3 tagatose-6-phosphate 17 d1jova_ 100.0 20 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Hypothetical protein HI1317 18 c3ty1B_ 100.0 13 PDB header:isomerase Chain: B: PDB Molecule:hypothetical aldose 1-epimerase; PDBTitle: crystal structure of a hypothetical aldose 1-epimerase (kpn_04629)2 from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.90 a3 resolution 19 c3bs6B_ 97.1 16 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: 1.8 angstrom crystal structure of the periplasmic domain of2 the membrane insertase yidc 20 c3blcB_ 96.4 16 PDB header:chaperone,protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: crystal structure of the periplasmic domain of the escherichia coli2 yidc 21 d1k1xa2 not modelled 89.8 12 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:4-alpha-glucanotransferase, C-terminal domain 22 c2xn1B_ not modelled 85.6 9 PDB header:hydrolase Chain: B: PDB Molecule:alpha-galactosidase; PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris 23 c2cqtA_ not modelled 80.8 17 PDB header:transferase Chain: A: PDB Molecule:cellobiose phosphorylase; PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate 24 c3rgbA_ not modelled 74.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 25 c1yewI_ not modelled 74.6 17 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 26 c2yfnA_ not modelled 72.9 10 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask; PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask 27 d1ejxb_ not modelled 72.8 23 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 28 d4ubpb_ not modelled 68.5 23 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 29 c3mi6A_ not modelled 66.9 15 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11. 30 c3rfrI_ not modelled 65.4 17 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 31 d1jz8a4 not modelled 61.3 13 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:beta-Galactosidase, domain 5 32 d1e9ya1 not modelled 60.0 19 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 33 c3qgaD_ not modelled 57.7 32 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 34 c1v7wA_ not modelled 56.9 9 PDB header:transferase Chain: A: PDB Molecule:chitobiose phosphorylase; PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac 35 d1v7wa2 not modelled 54.8 8 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Glycosyltransferase family 36 N-terminal domain 36 c1e9zA_ not modelled 50.2 19 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 37 c3isyA_ not modelled 45.5 15 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 38 c2kl8A_ not modelled 40.2 13 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 39 c3ndyG_ not modelled 40.1 19 PDB header:hydrolase Chain: G: PDB Molecule:endoglucanase d; PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 40 c1k1yA_ not modelled 36.9 10 PDB header:transferase Chain: A: PDB Molecule:4-alpha-glucanotransferase; PDBTitle: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase2 complexed with acarbose 41 c3qbtH_ not modelled 33.4 22 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 42 c3bgaB_ not modelled 21.6 12 PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 43 d2vzsa2 not modelled 20.9 37 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 44 c3obaA_ not modelled 18.6 15 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis 45 d1w8oa1 not modelled 18.0 27 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 46 c2x3bB_ not modelled 12.2 27 PDB header:hydrolase Chain: B: PDB Molecule:toxic extracellular endopeptidase; PDBTitle: asap1 inactive mutant e294a, an extracellular toxic zinc2 metalloendopeptidase 47 d1f2ri_ not modelled 12.2 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:CAD domain 48 d2exna1 not modelled 10.8 12 Fold:MOSC N-terminal domain-like Superfamily:MOSC N-terminal domain-like Family:MOSC N-terminal domain-like 49 d1c9fa_ not modelled 10.7 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:CAD domain 50 c2zf9D_ not modelled 10.4 31 PDB header:structural protein Chain: D: PDB Molecule:scae cell-surface anchored scaffoldin protein; PDBTitle: crystal structure of a type iii cohesin module from the cellulosomal2 scae cell-surface anchoring scaffoldin of ruminococcus flavefaciens 51 c2p28A_ not modelled 9.9 25 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-2; PDBTitle: structure of the phe2 and phe3 fragments of the integrin beta2 subunit 52 c2x41A_ not modelled 9.1 21 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 53 c2kutA_ not modelled 8.4 37 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of gmr58a from geobacter metallireducens.2 northeast structural genomics consortium target gmr58a 54 d1ibxa_ not modelled 8.3 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:CAD domain 55 d1wn7a1 not modelled 8.2 11 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:DnaQ-like 3'-5' exonuclease 56 c3qfgA_ not modelled 8.2 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: structure of a putative lipoprotein from staphylococcus aureus subsp.2 aureus nctc 8325 57 d1nkga3 not modelled 7.9 24 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Rhamnogalacturonase B, RhgB, N-terminal domain 58 d1s58a_ not modelled 7.8 20 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP 59 c3nttA_ not modelled 7.6 28 PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: structural insights of adeno-associated virus 5. a gene therapy vector2 for cystic fibrosis 60 c3cfuA_ not modelled 7.6 17 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 61 d2je8a2 not modelled 7.4 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 62 d1mspa_ not modelled 7.3 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 63 d1ny721 not modelled 7.2 9 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 64 d1jv2a2 not modelled 7.1 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Integrin domains Family:Integrin domains 65 c3ac0B_ not modelled 7.1 22 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 66 d1oe1a1 not modelled 6.9 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 67 c1ibxB_ not modelled 6.6 29 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:chimera of igg binding protein g and dna PDBTitle: nmr structure of dff40 and dff45 n-terminal domain complex 68 d1ibxb_ not modelled 6.6 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:CAD domain 69 d1pgl21 not modelled 6.3 15 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 70 c3cdzA_ not modelled 6.1 31 PDB header:blood clotting Chain: A: PDB Molecule:coagulation factor viii heavy chain; PDBTitle: crystal structure of human factor viii 71 d1exha_ not modelled 6.1 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family II 72 d1pgw21 not modelled 6.1 15 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Comoviridae-like VP 73 c2r5kE_ not modelled 6.0 11 PDB header:viral protein Chain: E: PDB Molecule:major capsid protein l1; PDBTitle: pentamer structure of major capsid protein l1 of human2 papilloma virus type 11 74 c2zooA_ not modelled 5.9 10 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125 75 c2l8aA_ not modelled 5.8 18 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: structure of a novel cbm3 lacking the calcium-binding site 76 c3qisA_ not modelled 5.4 25 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 77 c3mpbA_ not modelled 5.2 43 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 78 c2eelA_ not modelled 5.1 12 PDB header:apoptosis Chain: A: PDB Molecule:cell death activator cide-a; PDBTitle: solution structure of the cide-n domain of human cell death2 activator cide-a 79 c2aenH_ not modelled 5.1 11 PDB header:viral protein Chain: H: PDB Molecule:outer capsid protein vp4, vp8* core; PDBTitle: crystal structure of the rotavirus strain ds-1 vp8* core 80 c1lf6A_ not modelled 5.0 10 PDB header:hydrolase Chain: A: PDB Molecule:glucoamylase; PDBTitle: crystal structure of bacterial glucoamylase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0