Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP69441
DateThu Jan 5 12:11:40 GMT 2012
Unique Job IDc10ef4f528cd8dda

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1ankA_
Top template information
PDB header:transferase(phosphotransferase)
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: the closed conformation of a highly flexible protein: the2 structure of e. coli adenylate kinase with bound amp and3 amppnp
Confidence and coverage
Confidence:100.0% Coverage:100%
214 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT
Secondary structure 

















SS confidence 



























































Disorder  ?








































??















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   .........70.........80.........90.........100.........110.........120
Sequence  DELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI
Secondary structure 

















SS confidence 



























































Disorder 



























































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   .........130.........140.........150.........160.........170.........180
Sequence  VGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIG
Secondary structure 




































SS confidence 



























































Disorder 


















???

??????





























Disorder confidence 



























































 
   .........190.........200.........210....
Sequence  YYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG
Secondary structure 










SS confidence 

































Disorder 































??
Disorder confidence 

































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ank chain A

3D model

Region: 1 - 214
Aligned: 214
Modelled: 214
Confidence: 100.0%
Identity: 100%
PDB header:transferase(phosphotransferase)
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: the closed conformation of a highly flexible protein: the2 structure of e. coli adenylate kinase with bound amp and3 amppnp

Phyre2

PDB 2xb4 chain A

3D model

Region: 1 - 213
Aligned: 212
Modelled: 213
Confidence: 100.0%
Identity: 34%
PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structures of zinc containing adenylate kinase from2 desulfovibrio gigas

Phyre2

PDB 3gmt chain B

3D model

Region: 1 - 190
Aligned: 190
Modelled: 189
Confidence: 100.0%
Identity: 67%
PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of adenylate kinase from burkholderia pseudomallei

Phyre2

PDB 1s3g chain A

3D model

Region: 1 - 213
Aligned: 208
Modelled: 213
Confidence: 100.0%
Identity: 51%
PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of adenylate kinase from bacillus2 globisporus

Phyre2

PDB 2ar7 chain A

3D model

Region: 1 - 213
Aligned: 205
Modelled: 213
Confidence: 100.0%
Identity: 38%
PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase 4;
PDBTitle: crystal structure of human adenylate kinase 4, ak4

Phyre2

PDB 3aky chain A

3D model

Region: 1 - 214
Aligned: 209
Modelled: 214
Confidence: 100.0%
Identity: 47%
PDB header:adenylate kinase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: stability, activity and structure of adenylate kinase2 mutants

Phyre2

PDB 2eu8 chain B

3D model

Region: 1 - 214
Aligned: 209
Modelled: 214
Confidence: 99.9%
Identity: 49%
PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of a thermostable mutant of bacillus2 subtilis adenylate kinase (q199r)

Phyre2

PDB 3tlx chain A

3D model

Region: 2 - 213
Aligned: 207
Modelled: 212
Confidence: 99.9%
Identity: 44%
PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase 2;
PDBTitle: crystal structure of pf10_0086, adenylate kinase from plasmodium2 falciparum

Phyre2

PDB 2ak2 chain A

3D model

Region: 1 - 213
Aligned: 208
Modelled: 213
Confidence: 99.9%
Identity: 49%
PDB header:phosphotransferase
Chain: A: PDB Molecule:adenylate kinase isoenzyme-2;
PDBTitle: adenylate kinase isoenzyme-2

Phyre2

PDB 2ak3 chain B

3D model

Region: 1 - 213
Aligned: 205
Modelled: 213
Confidence: 99.9%
Identity: 41%
PDB header:transferase (phosphotransferase)
Chain: B: PDB Molecule:adenylate kinase isoenzyme-3;
PDBTitle: the three-dimensional structure of the complex between2 mitochondrial matrix adenylate kinase and its substrate3 amp at 1.85 angstroms resolution

Phyre2

PDB 3be4 chain A

3D model

Region: 2 - 213
Aligned: 205
Modelled: 212
Confidence: 99.9%
Identity: 50%
PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of cryptosporidium parvum adenylate kinase cgd5_3360

Phyre2

PDB 1e4v chain A domain 1

3D model

Region: 1 - 214
Aligned: 179
Modelled: 179
Confidence: 99.9%
Identity: 98%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2

PDB 2rh5 chain B

3D model

Region: 1 - 213
Aligned: 198
Modelled: 213
Confidence: 99.9%
Identity: 48%
PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: structure of apo adenylate kinase from aquifex aeolicus

Phyre2

PDB 1p3j chain A domain 1

3D model

Region: 1 - 213
Aligned: 173
Modelled: 178
Confidence: 99.9%
Identity: 49%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2

PDB 1ak2 chain A domain 1

3D model

Region: 1 - 213
Aligned: 178
Modelled: 183
Confidence: 99.9%
Identity: 48%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2

PDB 1zak chain B

3D model

Region: 1 - 213
Aligned: 202
Modelled: 213
Confidence: 99.9%
Identity: 45%
PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: adenylate kinase from maize in complex with the inhibitor2 p1,p5-bis(adenosine-5'-)pentaphosphate (ap5a)

Phyre2

PDB 1s3g chain A domain 1

3D model

Region: 1 - 213
Aligned: 173
Modelled: 178
Confidence: 99.9%
Identity: 50%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2

PDB 1zin chain A domain 1

3D model

Region: 1 - 214
Aligned: 174
Modelled: 179
Confidence: 99.9%
Identity: 48%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2

PDB 2cdn chain A domain 1

3D model

Region: 1 - 214
Aligned: 176
Modelled: 183
Confidence: 99.9%
Identity: 46%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2

PDB 1aky chain A domain 1

3D model

Region: 1 - 214
Aligned: 171
Modelled: 176
Confidence: 99.9%
Identity: 46%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
1

c1ankA_
2

c2xb4A_
3

c3gmtB_
4

c1s3gA_
5

c2ar7A_
6

c3akyA_
7

c2eu8B_
8

c3tlxA_
9

c2ak2A_
10

c2ak3B_
11

c3be4A_
12

d1e4va1
13

c2rh5B_
14

d1p3ja1
15

d1ak2a1
16

c1zakB_
17

d1s3ga1
18

d1zina1
19

d2cdna1
20

d1akya1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ankA_



100.0 100 PDB header:transferase(phosphotransferase)
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: the closed conformation of a highly flexible protein: the2 structure of e. coli adenylate kinase with bound amp and3 amppnp
2c2xb4A_



100.0 34 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structures of zinc containing adenylate kinase from2 desulfovibrio gigas
3c3gmtB_



100.0 67 PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of adenylate kinase from burkholderia pseudomallei
4c1s3gA_



100.0 51 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of adenylate kinase from bacillus2 globisporus
5c2ar7A_



100.0 38 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase 4;
PDBTitle: crystal structure of human adenylate kinase 4, ak4
6c3akyA_



100.0 47 PDB header:adenylate kinase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: stability, activity and structure of adenylate kinase2 mutants
7c2eu8B_



99.9 49 PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of a thermostable mutant of bacillus2 subtilis adenylate kinase (q199r)
8c3tlxA_



99.9 44 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase 2;
PDBTitle: crystal structure of pf10_0086, adenylate kinase from plasmodium2 falciparum
9c2ak2A_



99.9 49 PDB header:phosphotransferase
Chain: A: PDB Molecule:adenylate kinase isoenzyme-2;
PDBTitle: adenylate kinase isoenzyme-2
10c2ak3B_



99.9 41 PDB header:transferase (phosphotransferase)
Chain: B: PDB Molecule:adenylate kinase isoenzyme-3;
PDBTitle: the three-dimensional structure of the complex between2 mitochondrial matrix adenylate kinase and its substrate3 amp at 1.85 angstroms resolution
11c3be4A_



99.9 50 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of cryptosporidium parvum adenylate kinase cgd5_3360
12d1e4va1



99.9 98 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
13c2rh5B_



99.9 48 PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: structure of apo adenylate kinase from aquifex aeolicus
14d1p3ja1



99.9 49 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
15d1ak2a1



99.9 48 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
16c1zakB_



99.9 45 PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: adenylate kinase from maize in complex with the inhibitor2 p1,p5-bis(adenosine-5'-)pentaphosphate (ap5a)
17d1s3ga1



99.9 50 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
18d1zina1



99.9 48 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
19d2cdna1



99.9 46 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
20d1akya1



99.9 46 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
21c2bwjC_



not modelled 99.8 33 PDB header:transferase
Chain: C: PDB Molecule:adenylate kinase 5;
PDBTitle: structure of adenylate kinase 5
22c3cm0A_



not modelled 99.8 42 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of adenylate kinase from thermus2 thermophilus hb8
23d1zaka1



not modelled 99.8 46 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
24d3adka_



not modelled 99.8 39 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
25d2ak3a1



not modelled 99.8 37 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
26d1ukza_



not modelled 99.8 31 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
27d1teva_



not modelled 99.8 33 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
28d1qf9a_



not modelled 99.8 32 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
29d1e6ca_



not modelled 99.6 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Shikimate kinase (AroK)
30c3t61A_



not modelled 99.6 18 PDB header:transferase
Chain: A: PDB Molecule:gluconokinase;
PDBTitle: crystal structure of a gluconokinase from sinorhizobium meliloti 1021
31c1zuiA_



not modelled 99.6 14 PDB header:transferase
Chain: A: PDB Molecule:shikimate kinase;
PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase
32c2plrB_



not modelled 99.6 14 PDB header:transferase
Chain: B: PDB Molecule:probable thymidylate kinase;
PDBTitle: crystal structure of dtmp kinase (st1543) from sulfolobus tokodaii2 strain7
33c2ql6H_



not modelled 99.6 16 PDB header:signaling protein,transferase
Chain: H: PDB Molecule:nicotinamide riboside kinase 1;
PDBTitle: human nicotinamide riboside kinase (nrk1)
34d1q3ta_



not modelled 99.6 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
35c2z0hA_



not modelled 99.6 19 PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase in complex with dtdp2 and adp from thermotoga maritima
36d1nn5a_



not modelled 99.6 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
37c2h92C_



not modelled 99.6 16 PDB header:transferase
Chain: C: PDB Molecule:cytidylate kinase;
PDBTitle: crystal structure of staphylococcus aureus cytidine2 monophosphate kinase in complex with cytidine-5'-3 monophosphate
38c2pt5D_



not modelled 99.6 19 PDB header:transferase
Chain: D: PDB Molecule:shikimate kinase;
PDBTitle: crystal structure of shikimate kinase (aq_2177) from aquifex aeolicus2 vf5
39d1knqa_



not modelled 99.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Gluconate kinase
40d1gsia_



not modelled 99.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
41d1vhta_



not modelled 99.5 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
42c2ccjA_



not modelled 99.5 16 PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of s. aureus thymidylate kinase complexed2 with thymidine monophosphate
43d1y63a_



not modelled 99.5 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
44c3h0kA_



not modelled 99.5 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0200 protein sso1041;
PDBTitle: crystal structure of an adenylated kinase related protein from2 sulfolobus solfataricus to 3.25a
45c2pbrB_



not modelled 99.5 15 PDB header:transferase
Chain: B: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase (aq_969) from aquifex aeolicus2 vf5
46d2iyva1



not modelled 99.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Shikimate kinase (AroK)
47c3trfB_



not modelled 99.5 13 PDB header:transferase
Chain: B: PDB Molecule:shikimate kinase;
PDBTitle: structure of a shikimate kinase (arok) from coxiella burnetii
48d1rkba_



not modelled 99.5 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
49c3lv8A_



not modelled 99.5 16 PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp
50c2w0sB_



not modelled 99.5 16 PDB header:transferase
Chain: B: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate
51d1viaa_



not modelled 99.5 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Shikimate kinase (AroK)
52c2if2C_



not modelled 99.5 21 PDB header:transferase
Chain: C: PDB Molecule:dephospho-coa kinase;
PDBTitle: crystal structure of the putative dephospho-coa kinase from aquifex2 aeolicus, northeast structural genomics target qr72.
53d1tmka_



not modelled 99.5 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
54c3akcA_



not modelled 99.5 16 PDB header:transferase
Chain: A: PDB Molecule:cytidylate kinase;
PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8
55c2jatA_



not modelled 99.5 18 PDB header:transferase
Chain: A: PDB Molecule:deoxyguanosine kinase;
PDBTitle: structure of deoxyadenosine kinase from m.mycoides with2 products dcmp and a flexible dcdp bound
56c3r8cB_



not modelled 99.5 16 PDB header:transferase
Chain: B: PDB Molecule:cytidylate kinase;
PDBTitle: crystal structure of cytidylate kinase (cmk) from mycobacterium2 abscessus
57d4tmka_



not modelled 99.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
58c2rhmD_



not modelled 99.4 12 PDB header:unknown function
Chain: D: PDB Molecule:putative kinase;
PDBTitle: crystal structure of a putative kinase (caur_3907) from chloroflexus2 aurantiacus j-10-fl at 1.70 a resolution
59c2f6rA_



not modelled 99.4 13 PDB header:transferase
Chain: A: PDB Molecule:bifunctional coenzyme a synthase;
PDBTitle: crystal structure of bifunctional coenzyme a synthase (coa synthase):2 (18044849) from mus musculus at 1.70 a resolution
60c3ld9D_



not modelled 99.4 16 PDB header:transferase
Chain: D: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase from ehrlichia chaffeensis at2 2.15a resolution
61d1jjva_



not modelled 99.4 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
62d1ckea_



not modelled 99.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
63c2wwiC_



not modelled 99.4 13 PDB header:transferase
Chain: C: PDB Molecule:thymidilate kinase, putative;
PDBTitle: plasmodium falciparum thymidylate kinase in complex with2 aztmp and adp
64c3hdtB_



not modelled 99.4 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative kinase;
PDBTitle: crystal structure of putative kinase from clostridium symbiosum atcc2 14940
65d1kaga_



not modelled 99.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Shikimate kinase (AroK)
66c3nwjB_



not modelled 99.4 12 PDB header:transferase
Chain: B: PDB Molecule:atsk2;
PDBTitle: crystal structure of shikimate kinase from arabidopsis thaliana2 (atsk2)
67d1uf9a_



not modelled 99.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
68d1p5zb_



not modelled 99.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
69d1bifa1



not modelled 99.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
70c2grjH_



not modelled 99.3 15 PDB header:transferase
Chain: H: PDB Molecule:dephospho-coa kinase;
PDBTitle: crystal structure of dephospho-coa kinase (ec 2.7.1.24)2 (dephosphocoenzyme a kinase) (tm1387) from thermotoga maritima at3 2.60 a resolution
71d1nksa_



not modelled 99.3 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
72c3fdiA_



not modelled 99.3 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein from eubacterium2 ventriosum atcc 27560.
73d1khta_



not modelled 99.3 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
74c2qroB_



not modelled 99.3 14 PDB header:transferase
Chain: B: PDB Molecule:deoxycytidine kinase;
PDBTitle: human deoxycytidine kinase damp, udp, mg ion product complex
75c2vliB_



not modelled 99.3 10 PDB header:transferase
Chain: B: PDB Molecule:antibiotic resistance protein;
PDBTitle: structure of deinococcus radiodurans tunicamycin resistance2 protein
76d2ocpa1



not modelled 99.3 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
77c2yvuA_



not modelled 99.3 11 PDB header:transferase
Chain: A: PDB Molecule:probable adenylyl-sulfate kinase;
PDBTitle: crystal structure of ape1195
78d2bdta1



not modelled 99.2 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Atu3015-like
79d1ki9a_



not modelled 99.2 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
80d1qhxa_



not modelled 99.2 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Chloramphenicol phosphotransferase
81c1bifA_



not modelled 99.1 14 PDB header:bifunctional enzyme
Chain: A: PDB Molecule:6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase;
PDBTitle: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase bifunctional2 enzyme complexed with atp-g-s and phosphate
82c2ia5C_



not modelled 99.1 21 PDB header:transferase
Chain: C: PDB Molecule:polynucleotide kinase;
PDBTitle: t4 polynucleotide kinase/phosphatase with bound sulfate and2 magnesium.
83d1m8pa3



not modelled 99.1 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ATP sulfurylase C-terminal domain
84c2vp4D_



not modelled 99.1 12 PDB header:transferase
Chain: D: PDB Molecule:deoxynucleoside kinase;
PDBTitle: structural studies of nucleoside analog and feedback2 inhibitor binding to drosophila melanogaster3 multisubstrate deoxyribonucleoside kinase
85c1ly1A_



not modelled 99.0 17 PDB header:transferase
Chain: A: PDB Molecule:polynucleotide kinase;
PDBTitle: structure and mechanism of t4 polynucleotide kinase
86d1ly1a_



not modelled 99.0 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
87d1m7gb_



not modelled 99.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Adenosine-5'phosphosulfate kinase (APS kinase)
88d1zp6a1



not modelled 99.0 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Atu3015-like
89d1lw7a2



not modelled 99.0 8 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
90c3ch4B_



not modelled 99.0 12 PDB header:transferase
Chain: B: PDB Molecule:phosphomevalonate kinase;
PDBTitle: the crystal structure of human phosphomavelonate kinase at2 1.8 a resolution
91d1znwa1



not modelled 99.0 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
92c3asyB_



not modelled 99.0 20 PDB header:transferase
Chain: B: PDB Molecule:uridine kinase;
PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8
93c2gksB_



not modelled 98.9 15 PDB header:transferase
Chain: B: PDB Molecule:bifunctional sat/aps kinase;
PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
94c1znyA_



not modelled 98.9 15 PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of mycobacterium tuberculosis guanylate kinase in2 complex with gdp
95d1k6ma1



not modelled 98.9 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
96d2vp4a1



not modelled 98.9 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
97c1m8pB_



not modelled 98.9 14 PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylyltransferase;
PDBTitle: crystal structure of p. chrysogenum atp sulfurylase in the t-state
98d1yj5a2



not modelled 98.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
99c3tr0A_



not modelled 98.9 16 PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: structure of guanylate kinase (gmk) from coxiella burnetii
100d1m7ga_



not modelled 98.9 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Adenosine-5'phosphosulfate kinase (APS kinase)
101c1k6mA_



not modelled 98.9 17 PDB header:transferase, hydrolase
Chain: A: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6-
PDBTitle: crystal structure of human liver 6-phosphofructo-2-2 kinase/fructose-2,6-bisphosphatase
102d1gkya_



not modelled 98.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
103d1uj2a_



not modelled 98.8 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
104d1deka_



not modelled 98.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
105c1yj5B_



not modelled 98.8 20 PDB header:transferase
Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain;
PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme
106c3zvmA_



not modelled 98.8 18 PDB header:hydrolase/transferase/dna
Chain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase;
PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase
107c1lw7A_



not modelled 98.8 13 PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulator nadr;
PDBTitle: nadr protein from haemophilus influenzae
108c1ueiB_



not modelled 98.7 16 PDB header:transferase
Chain: B: PDB Molecule:uridine-cytidine kinase 2;
PDBTitle: crystal structure of human uridine-cytidine kinase 22 complexed with a feedback-inhibitor, utp
109c1xnjB_



not modelled 98.6 19 PDB header:transferase
Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate
PDBTitle: aps complex of human paps synthetase 1
110c2qorA_



not modelled 98.6 20 PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of plasmodium vivax guanylate kinase
111d1x6va3



not modelled 98.6 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Adenosine-5'phosphosulfate kinase (APS kinase)
112c2i1vB_



not modelled 98.6 14 PDB header:transferase, hydrolase
Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6-
PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate
113d1s96a_



not modelled 98.6 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
114d1lvga_



not modelled 98.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
115c2p5tD_



not modelled 98.5 21 PDB header:transcription regulator
Chain: D: PDB Molecule:pezt;
PDBTitle: molecular and structural characterization of the pezat chromosomal2 toxin-antitoxin system of the human pathogen streptococcus pneumoniae
116c3cr8C_



not modelled 98.5 22 PDB header:transferase
Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate
PDBTitle: hexameric aps kinase from thiobacillus denitrificans
117c3a4mB_



not modelled 98.5 13 PDB header:transferase
Chain: B: PDB Molecule:l-seryl-trna(sec) kinase;
PDBTitle: crystal structure of archaeal o-phosphoseryl-trna(sec)2 kinase
118c1z6gA_



not modelled 98.4 19 PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of guanylate kinase from plasmodium falciparum
119d1g41a_



not modelled 98.2 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
120d1ye8a1



not modelled 98.1 39 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0