Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	R	R	N	L	I	T	S	A	I	L	L	M	A	P	L	A	F	S	A	Q	S	L	A	E	S	L	T	V	E	Q	R	L	E	L	L	E	K	A	L	R	E	T	Q	S	E	L	K	K	Y	K	D	E	E	K	K	K	Y	T
Secondary structure
SS confidence
Disorder		?	?	?	?											?	?	?	?	?	?	?	?	?	?	?	?																									?						?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	A	T	V	N	R	S	V	S	T	N	D	Q	G	Y	A	A	N	P	F	P	T	S	S	A	A	K	P	D	A	V	L	V	K	N	E	E	K	N	A	S	E	T	G	S	I	Y	S	S	M	T	L	K	D	F	S	K	F	V	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	E	I	G	F	S	Y	N	G	Y	Y	R	S	G	W	G	T	A	S	H	G	S	P	K	S	W	A	I	G	S	L	G	R	F	G	N	E	Y	S	G	W	F	D	L	Q	L	K	Q	R	V	Y	N	E	N	G	K	R	V	D	A
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	V	M	M	D	G	N	V	G	Q	Q	Y	S	T	G	W	F	G	D	N	A	G	G	E	N	Y	M	Q	F	S	D	M	Y	V	T	T	K	G	F	L	P	F	A	P	E	A	D	F	W	V	G	K	H	G	A	P	K	I	E	I
Secondary structure
SS confidence
Disorder										?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?															?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	M	L	D	W	K	T	Q	R	T	D	A	A	A	G	V	G	L	E	N	W	K	V	G	P	G	K	I	D	I	A	L	V	R	E	D	V	D	D	Y	D	R	S	L	Q	N	K	Q	Q	I	N	T	N	T	I	D	L	R	Y	K
Secondary structure
SS confidence
Disorder																																							?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	I	P	L	W	D	K	A	T	L	M	V	S	G	R	Y	V	T	A	N	E	S	A	S	E	K	D	N	Q	D	N	N	G	Y	Y	D	W	K	D	T	W	M	F	G	T	S	L	T	Q	K	F	D	K	G	G	F	N	E	F	S
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?	?	?	?	?	?	?	?	?																		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		F	L	V	A	N	N	S	I	A	S	N	F	G	R	Y	A	G	A	S	P	F	T	T	F	N	G	R	Y	Y	G	D	H	T	G	G	T	A	V	R	L	T	S	Q	G	E	A	Y	I	G	D	H	F	I	V	A	N	A	I	V	Y
Secondary structure
SS confidence
Disorder											?				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		S	F	G	N	D	I	Y	S	Y	E	T	G	A	H	S	D	F	E	S	I	R	A	V	V	R	P	A	Y	I	W	D	Q	Y	N	Q	T	G	V	E	L	G	Y	F	T	Q	Q	N	K	D	A	N	S	N	K	F	N	E	S	G	Y
Secondary structure
SS confidence
Disorder					?		?	?	?	?	?	?	?																																		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Sequence		K	T	T	L	F	H	T	F	K	V	N	T	S	M	L	T	S	R	P	E	I	R	F	Y	A	T	Y	I	K	A	L	E	N	E	L	D	G	F	T	F	E	D	N	K	D	D	Q	F	A	V	G	A	Q	A	E	I	W	W
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?	?																	?	?	?	?	?	?	?	?	?	?	?	?	?												?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1af6 chain A Region: 125 - 538 Aligned: 389 Modelled: 414 Confidence: 100.0% Identity: 28% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Maltoporin-like Phyre2 PDB 2mpr chain A Region: 125 - 538 Aligned: 389 Modelled: 414 Confidence: 100.0% Identity: 26% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Maltoporin-like Phyre2 PDB 1a0t chain P Region: 123 - 538 Aligned: 384 Modelled: 416 Confidence: 100.0% Identity: 22% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Maltoporin-like Phyre2 PDB 2zfg chain A domain 1 Region: 118 - 479 Aligned: 315 Modelled: 362 Confidence: 94.5% Identity: 13% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Porin Phyre2 PDB 3qra chain A Region: 353 - 533 Aligned: 149 Modelled: 163 Confidence: 93.7% Identity: 16% PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis Phyre2 PDB 1qj8 chain A Region: 410 - 534 Aligned: 114 Modelled: 125 Confidence: 91.4% Identity: 7% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 1pho chain A Region: 120 - 476 Aligned: 300 Modelled: 328 Confidence: 90.5% Identity: 12% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Porin Phyre2 PDB 2k0l chain A Region: 359 - 532 Aligned: 165 Modelled: 174 Confidence: 88.2% Identity: 10% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Phyre2 PDB 1g90 chain A Region: 373 - 534 Aligned: 159 Modelled: 162 Confidence: 85.0% Identity: 9% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 1cos chain B Region: 28 - 52 Aligned: 25 Modelled: 25 Confidence: 81.1% Identity: 24% PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle Phyre2 PDB 1cos chain A Region: 28 - 52 Aligned: 25 Modelled: 25 Confidence: 81.1% Identity: 24% PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle Phyre2 PDB 1cos chain C Region: 28 - 52 Aligned: 25 Modelled: 25 Confidence: 80.7% Identity: 24% PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle Phyre2 PDB 3nsg chain A Region: 118 - 478 Aligned: 318 Modelled: 350 Confidence: 79.9% Identity: 13% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Phyre2 PDB 2x6p chain C Region: 28 - 52 Aligned: 25 Modelled: 25 Confidence: 76.8% Identity: 24% PDB header:de novo protein Chain: C: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c Phyre2 PDB 2x6p chain A Region: 28 - 52 Aligned: 25 Modelled: 25 Confidence: 76.8% Identity: 24% PDB header:de novo protein Chain: A: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c Phyre2 PDB 2x6p chain B Region: 28 - 52 Aligned: 25 Modelled: 25 Confidence: 76.8% Identity: 24% PDB header:de novo protein Chain: B: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c Phyre2 PDB 3n4x chain B Region: 16 - 128 Aligned: 89 Modelled: 99 Confidence: 76.2% Identity: 15% PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length Phyre2 PDB 3mkx chain C Region: 27 - 73 Aligned: 47 Modelled: 46 Confidence: 74.4% Identity: 9% PDB header:antiviral protein Chain: C: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of bst2/tetherin Phyre2 PDB 1zxa chain B Region: 31 - 57 Aligned: 27 Modelled: 27 Confidence: 73.0% Identity: 37% PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia Phyre2 PDB 1aq5 chain C Region: 1 - 41 Aligned: 31 Modelled: 41 Confidence: 72.6% Identity: 29% PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures Phyre2 1 d1af6a_ 2 d2mpra_ 3 d1a0tp_ 4 d2zfga1 5 c3qraA_ 6 d1qj8a_ 7 d1phoa_ 8 c2k0lA_ 9 d1g90a_ 10 c1cosB_ 11 c1cosA_ 12 c1cosC_ 13 c3nsgA_ 14 c2x6pC_ 15 c2x6pA_ 16 c2x6pB_ 17 c3n4xB_ 18 c3mkxC_ 19 c1zxaB_ 20 c1aq5C_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1af6a_ 100.0 28 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Maltoporin-like 2 d2mpra_ 100.0 26 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Maltoporin-like 3 d1a0tp_ 100.0 22 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Maltoporin-like 4 d2zfga1 94.5 13 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 5 c3qraA_ 93.7 16 PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis 6 d1qj8a_ 91.4 7 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 7 d1phoa_ 90.5 12 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 8 c2k0lA_ 88.2 10 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. 9 d1g90a_ 85.0 9 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 10 c1cosB_ 81.1 24 PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 11 c1cosA_ 81.1 24 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 12 c1cosC_ 80.7 24 PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 13 c3nsgA_ 79.9 13 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi 14 c2x6pC_ 76.8 24 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 15 c2x6pA_ 76.8 24 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 16 c2x6pB_ 76.8 24 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 17 c3n4xB_ 76.2 15 PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length 18 c3mkxC_ 74.4 9 PDB header:antiviral protein Chain: C: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of bst2/tetherin 19 c1zxaB_ 73.0 37 PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia 20 c1aq5C_ 72.6 29 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 21 c3u1aC_ not modelled 66.1 15 PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha 22 c2a3dA_ not modelled 65.9 32 PDB header:three-helix bundle Chain: A: PDB Molecule:protein (de novo three-helix bundle); PDBTitle: solution structure of a de novo designed single chain three-2 helix bundle (a3d) 23 c1y4cA_ not modelled 63.7 10 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 24 c2x7aB_ not modelled 63.3 9 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 25 c3m9bK_ not modelled 60.5 11 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 26 c2xzrA_ not modelled 59.8 10 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 27 c3cveC_ not modelled 59.3 16 PDB header:signaling protein Chain: C: PDB Molecule:homer protein homolog 1; PDBTitle: crystal structure of the carboxy terminus of homer1 28 c2jgoB_ not modelled 58.8 20 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 29 c3ljmA_ not modelled 58.8 20 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 30 c2jgoC_ not modelled 58.8 20 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 31 c3ljmB_ not modelled 58.8 20 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 32 c3ljmC_ not modelled 58.8 20 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 33 c2jgoA_ not modelled 58.8 20 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 34 c2wjqA_ not modelled 58.2 16 PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. 35 c3cvfA_ not modelled 57.9 24 PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 36 c1ca9D_ not modelled 57.8 6 PDB header:tnf signaling Chain: D: PDB Molecule:protein (tnf receptor associated factor 2); PDBTitle: structure of tnf receptor associated factor 2 in complex2 with a peptide from tnf-r2 37 c2zvfG_ not modelled 56.3 12 PDB header:ligase Chain: G: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase c-terminal dimerization domain 38 c3ni0A_ not modelled 56.2 19 PDB header:immune system Chain: A: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of mouse bst-2/tetherin ectodomain 39 c3e98B_ not modelled 54.1 21 PDB header:unknown function Chain: B: PDB Molecule:gaf domain of unknown function; PDBTitle: crystal structure of a gaf domain containing protein that belongs to2 pfam duf484 family (pa5279) from pseudomonas aeruginosa at 2.43 a3 resolution 40 c1u0iA_ not modelled 51.9 24 PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer 41 c3nb3C_ not modelled 51.7 11 PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components 42 c1kzzA_ not modelled 48.7 16 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: downstream regulator tank binds to the cd40 recognition2 site on traf3 43 c3iynR_ not modelled 48.1 14 PDB header:virus Chain: R: PDB Molecule:hexon-associated protein; PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5 44 c1coiA_ not modelled 47.4 12 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald 45 c1abzA_ not modelled 46.6 30 PDB header:de novo design Chain: A: PDB Molecule:alpha-t-alpha; PDBTitle: alpha-t-alpha, a de novo designed peptide, nmr, 232 structures 46 c1g6uB_ not modelled 46.1 26 PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer 47 d1i78a_ not modelled 46.1 18 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane protease OMPT 48 d1vp7b_ not modelled 46.0 15 Fold:Spectrin repeat-like Superfamily:XseB-like Family:XseB-like 49 c1kwwC_ not modelled 44.4 21 PDB header:immune system, sugar binding protein Chain: C: PDB Molecule:mannose-binding protein a; PDBTitle: rat mannose protein a complexed with a-me-fuc. 50 c2xdjF_ not modelled 43.4 18 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 51 c1ei3E_ not modelled 39.6 9 PDB header: PDB COMPND: 52 d1osma_ not modelled 39.5 15 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 53 c2iwvD_ not modelled 39.0 9 PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation 54 c2x27X_ not modelled 38.8 10 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa 55 c3efgA_ not modelled 38.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein slyx homolog; PDBTitle: structure of slyx protein from xanthomonas campestris pv. campestris2 str. atcc 33913 56 c1rb1A_ not modelled 36.8 19 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 57 c3k7zA_ not modelled 36.8 19 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 58 c1rb1B_ not modelled 36.8 19 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 59 c3k7zB_ not modelled 36.8 19 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 60 c1swiA_ not modelled 36.8 19 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 61 c1rb6C_ not modelled 36.8 19 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 62 c2yy0D_ not modelled 36.7 15 PDB header:transcription Chain: D: PDB Molecule:c-myc-binding protein; PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens 63 d1t3ua_ not modelled 35.4 15 Fold:Cell division protein ZapA-like Superfamily:Cell division protein ZapA-like Family:Cell division protein ZapA-like 64 d1fxka_ not modelled 34.5 9 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 65 c2zdiA_ not modelled 34.4 18 PDB header:chaperone Chain: A: PDB Molecule:prefoldin subunit beta; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 66 c2ykqC_ not modelled 34.0 16 PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer 67 c1ztaA_ not modelled 32.8 22 PDB header:dna-binding motif Chain: A: PDB Molecule:leucine zipper monomer; PDBTitle: the solution structure of a leucine-zipper motif peptide 68 d1seda_ not modelled 32.7 40 Fold:Hypothetical protein YhaI Superfamily:Hypothetical protein YhaI Family:Hypothetical protein YhaI 69 c1deqF_ not modelled 32.6 15 PDB header: PDB COMPND: 70 d1ykhb1 not modelled 32.2 14 Fold:Mediator hinge subcomplex-like Superfamily:Mediator hinge subcomplex-like Family:CSE2-like 71 c3ipkA_ not modelled 32.0 10 PDB header:cell adhesion Chain: A: PDB Molecule:agi/ii; PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans 72 c1ce0B_ not modelled 31.2 25 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 73 c2f1tB_ not modelled 31.2 9 PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw 74 c2o7hF_ not modelled 30.4 16 PDB header:transcription Chain: F: PDB Molecule:general control protein gcn4; PDBTitle: crystal structure of trimeric coiled coil gcn4 leucine zipper 75 c2l8aA_ not modelled 30.0 14 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: structure of a novel cbm3 lacking the calcium-binding site 76 c2x4mD_ not modelled 29.4 12 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 77 c2zv4O_ not modelled 28.8 10 PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution 78 c1l6nA_ not modelled 28.3 20 PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein 79 c1d7mA_ not modelled 27.6 26 PDB header:contractile protein Chain: A: PDB Molecule:cortexillin i; PDBTitle: coiled-coil dimerization domain from cortexillin i 80 c3dbzB_ not modelled 27.4 24 PDB header:sugar binding protein Chain: B: PDB Molecule:pulmonary surfactant-associated protein d; PDBTitle: human surfactant protein d 81 c1ij2C_ not modelled 27.4 19 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 82 c1n73C_ not modelled 27.1 8 PDB header:blood clotting Chain: C: PDB Molecule:fibrin gamma chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide 83 c1ij3B_ not modelled 27.0 19 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 84 c1ij3C_ not modelled 27.0 19 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 85 c3bvhE_ not modelled 26.9 15 PDB header:blood clotting Chain: E: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 86 c3kqgC_ not modelled 26.6 18 PDB header:immune system Chain: C: PDB Molecule:c-type lectin domain family 4 member k; PDBTitle: trimeric structure of langerin 87 c2z5hB_ not modelled 26.1 21 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin PDBTitle: crystal structure of the head-to-tail junction of2 tropomyosin complexed with a fragment of tnt 88 c2zdiC_ not modelled 25.9 15 PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 89 c1ij2B_ not modelled 25.7 19 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 90 d1ivsa1 not modelled 25.6 23 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 91 c2zshB_ not modelled 24.4 40 PDB header:hormone receptor Chain: B: PDB Molecule:della protein gai; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor 92 d1qjpa_ not modelled 24.4 11 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 93 c2wamB_ not modelled 24.0 17 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical alanine and leucine rich PDBTitle: crystal structure of mycobacterium tuberculosis unknown2 function protein rv2714 94 c3h5gB_ not modelled 23.8 21 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 95 c3h5fA_ not modelled 23.8 21 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 96 c3h5gC_ not modelled 23.8 21 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 97 c3h5fB_ not modelled 23.8 21 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 98 c3h5fC_ not modelled 23.8 21 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 99 c3h5gA_ not modelled 23.8 21 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 100 c2rjzA_ not modelled 23.6 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa 101 d2ao9a1 not modelled 23.4 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Nanomeric phage protein-like 102 c2hpcH_ not modelled 21.6 15 PDB header:blood clotting Chain: H: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 103 c2hpcF_ not modelled 20.6 9 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 104 c3ojaB_ not modelled 20.6 8 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0