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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1l6nA_

Fold library idPDB HeaderMoleculeTitle
c1l6nA_PDB header: viral proteinChain: A: PDB Molecule: gag polyprotein;PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein


Added to library: Tue Mar 16 12:40:34 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTG
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SS
SSSB
STTT

B

TTS
GGGTTSTTTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SEELRSLYNTIAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNLQGQ
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T


SBT

SS














S
 .........150.........160.........170.........180.........190.........200.........210
Sequence MVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAE
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SSSTTTTTT



S
 .........220.........230.........240.........250.........260.........270.........280
Sequence WDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTS
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Known secondary structure (DSSP) S




S

SS





TSSS
TSSS


SSSS
 ........
Sequence ILHHHHHH
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Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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