Secondary structure and disorder prediction

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Sequence		M	Q	F	S	T	T	P	T	L	E	G	Q	T	I	V	E	Y	C	G	V	V	T	G	E	A	I	L	G	A	N	I	F	R	D	F	F	A	G	I	R	D	I	V	G	G	R	S	G	A	Y	E	K	E	L	R	K	A	R	E	I
Secondary structure
SS confidence
Disorder		?	?		?	?	?	?																							?												?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Sequence		A	F	E	E	L	G	S	Q	A	R	A	L	G	A	D	A	V	V	G	I	D	I	D	Y	E	T	V	G	Q	N	G	S	M	L	M	V	S	V	S	G	T	A	V	K	T	R	R
Secondary structure
SS confidence
Disorder												?	?															?																				?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1y2i chain C Region: 3 - 107 Aligned: 105 Modelled: 105 Confidence: 100.0% Identity: 97% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein s0862; PDBTitle: crystal structure of mcsg target apc27401 from shigella2 flexneri Phyre2 PDB 1y2i chain A Region: 3 - 107 Aligned: 105 Modelled: 105 Confidence: 100.0% Identity: 97% Fold: Dodecin subunit-like Superfamily: YbjQ-like Family: YbjQ-like Phyre2 PDB 1vr4 chain A domain 1 Region: 1 - 105 Aligned: 103 Modelled: 105 Confidence: 100.0% Identity: 55% Fold: Dodecin subunit-like Superfamily: YbjQ-like Family: YbjQ-like Phyre2 PDB 3qkb chain B Region: 1 - 106 Aligned: 89 Modelled: 92 Confidence: 99.9% Identity: 24% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function which belongs to2 pfam duf74 family (pepe_0654) from pediococcus pentosaceus atcc 257453 at 2.73 a resolution Phyre2 PDB 2y1b chain A Region: 2 - 105 Aligned: 81 Modelled: 85 Confidence: 97.7% Identity: 19% PDB header:membrane protein Chain: A: PDB Molecule:putative outer membrane protein, signal; PDBTitle: crystal structure of the e. coli outer membrane lipoprotein2 rcsf Phyre2 PDB 2jz7 chain A Region: 2 - 104 Aligned: 65 Modelled: 73 Confidence: 97.7% Identity: 22% PDB header:selenium-binding protein Chain: A: PDB Molecule:selenium binding protein; PDBTitle: solution nmr structure of selenium-binding protein from2 methanococcus vannielii Phyre2 PDB 3bfj chain K Region: 20 - 80 Aligned: 60 Modelled: 61 Confidence: 23.9% Identity: 12% PDB header:oxidoreductase Chain: K: PDB Molecule:1,3-propanediol oxidoreductase; PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase Phyre2 PDB 1xuz chain A Region: 63 - 77 Aligned: 15 Modelled: 15 Confidence: 18.0% Identity: 33% PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol Phyre2 PDB 1vli chain A Region: 60 - 77 Aligned: 18 Modelled: 18 Confidence: 16.8% Identity: 39% PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution Phyre2 PDB 1zva chain A Region: 32 - 72 Aligned: 41 Modelled: 41 Confidence: 16.6% Identity: 24% PDB header:viral protein Chain: A: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion Phyre2 PDB 2cx8 chain B Region: 58 - 92 Aligned: 35 Modelled: 33 Confidence: 16.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah) Phyre2 PDB 1vhk chain A domain 2 Region: 58 - 78 Aligned: 21 Modelled: 21 Confidence: 15.2% Identity: 24% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YggJ C-terminal domain-like Phyre2 PDB 1gef chain A Region: 59 - 82 Aligned: 24 Modelled: 24 Confidence: 14.5% Identity: 17% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 1vli chain A domain 2 Region: 60 - 77 Aligned: 18 Modelled: 18 Confidence: 13.8% Identity: 39% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: NeuB-like Phyre2 PDB 1hh1 chain A Region: 58 - 82 Aligned: 25 Modelled: 25 Confidence: 13.5% Identity: 24% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 1w96 chain A domain 2 Region: 62 - 77 Aligned: 16 Modelled: 16 Confidence: 13.1% Identity: 25% Fold: PreATP-grasp domain Superfamily: PreATP-grasp domain Family: BC N-terminal domain-like Phyre2 PDB 2qjh chain H Region: 66 - 78 Aligned: 13 Modelled: 13 Confidence: 12.8% Identity: 46% PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate Phyre2 PDB 1z85 chain B Region: 58 - 85 Aligned: 28 Modelled: 28 Confidence: 12.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution Phyre2 PDB 2j5y chain A domain 1 Region: 53 - 67 Aligned: 15 Modelled: 15 Confidence: 12.0% Identity: 40% Fold: immunoglobulin/albumin-binding domain-like Superfamily: Bacterial immunoglobulin/albumin-binding domains Family: GA module, an albumin-binding domain Phyre2 PDB 1to3 chain A Region: 66 - 77 Aligned: 12 Modelled: 12 Confidence: 11.9% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I aldolase Phyre2 1 c1y2iC_ 2 d1y2ia_ 3 d1vr4a1 4 c3qkbB_ 5 c2y1bA_ 6 c2jz7A_ 7 c3bfjK_ 8 c1xuzA_ 9 c1vliA_ 10 c1zvaA_ 11 c2cx8B_ 12 d1vhka2 13 d1gefa_ 14 d1vlia2 15 d1hh1a_ 16 d1w96a2 17 c2qjhH_ 18 c1z85B_ 19 d2j5ya1 20 d1to3a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1y2iC_ 100.0 97 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein s0862; PDBTitle: crystal structure of mcsg target apc27401 from shigella2 flexneri 2 d1y2ia_ 100.0 97 Fold:Dodecin subunit-like Superfamily:YbjQ-like Family:YbjQ-like 3 d1vr4a1 100.0 55 Fold:Dodecin subunit-like Superfamily:YbjQ-like Family:YbjQ-like 4 c3qkbB_ 99.9 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function which belongs to2 pfam duf74 family (pepe_0654) from pediococcus pentosaceus atcc 257453 at 2.73 a resolution 5 c2y1bA_ 97.7 19 PDB header:membrane protein Chain: A: PDB Molecule:putative outer membrane protein, signal; PDBTitle: crystal structure of the e. coli outer membrane lipoprotein2 rcsf 6 c2jz7A_ 97.7 22 PDB header:selenium-binding protein Chain: A: PDB Molecule:selenium binding protein; PDBTitle: solution nmr structure of selenium-binding protein from2 methanococcus vannielii 7 c3bfjK_ 23.9 12 PDB header:oxidoreductase Chain: K: PDB Molecule:1,3-propanediol oxidoreductase; PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase 8 c1xuzA_ 18.0 33 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 9 c1vliA_ 16.8 39 PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution 10 c1zvaA_ 16.6 24 PDB header:viral protein Chain: A: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion 11 c2cx8B_ 16.0 17 PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah) 12 d1vhka2 15.2 24 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 13 d1gefa_ 14.5 17 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 14 d1vlia2 13.8 39 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 15 d1hh1a_ 13.5 24 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 16 d1w96a2 13.1 25 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 17 c2qjhH_ 12.8 46 PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate 18 c1z85B_ 12.0 18 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution 19 d2j5ya1 12.0 40 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:GA module, an albumin-binding domain 20 d1to3a_ 11.9 25 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 21 c3gndC_ not modelled 11.9 31 PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate 22 c3jzdA_ not modelled 11.6 27 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution 23 c2wj0B_ not modelled 11.6 32 PDB header:hydrolase/dna Chain: B: PDB Molecule:archaeal hjc; PDBTitle: crystal structures of holliday junction resolvases from2 archaeoglobus fulgidus bound to dna substrate 24 d1v6za2 not modelled 11.3 18 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 25 d2zdra2 not modelled 10.8 28 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 26 c2v9dB_ not modelled 10.5 47 PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 27 c3iv7B_ not modelled 10.4 19 PDB header:oxidoreductase Chain: B: PDB Molecule:alcohol dehydrogenase iv; PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution 28 d1a53a_ not modelled 10.2 46 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 29 c2rdcA_ not modelled 10.2 26 PDB header:lipid binding protein Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative lipid binding protein (gsu0061) from2 geobacter sulfurreducens pca at 1.80 a resolution 30 c3cmgA_ not modelled 10.1 26 PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 31 d2je8a5 not modelled 10.0 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 32 c3d0cB_ not modelled 9.8 53 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution 33 c3ox4D_ not modelled 9.5 19 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 2; PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor 34 c2r94B_ not modelled 9.4 40 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase; PDBTitle: crystal structure of kd(p)ga from t.tenax 35 d1ulza2 not modelled 9.3 31 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 36 c3mtjA_ not modelled 9.2 23 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a 37 d1uf3a_ not modelled 9.0 37 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 38 c2egwB_ not modelled 8.6 23 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 39 c3sz8D_ not modelled 8.4 33 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei 40 d1xxxa1 not modelled 8.3 27 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 41 c2nuxB_ not modelled 7.8 16 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution 42 d1rrma_ not modelled 7.6 24 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 43 d1vlja_ not modelled 7.5 24 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 44 c3jrkG_ not modelled 7.4 33 PDB header:lyase Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2; PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes 45 c2rfgB_ not modelled 7.4 40 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution 46 c2vc6A_ not modelled 7.4 33 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of mosa from s. meliloti with pyruvate bound 47 d1o5ka_ not modelled 7.4 37 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 48 d1hl2a_ not modelled 7.3 40 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 49 d2j9ga2 not modelled 7.2 31 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 50 c2hdlA_ not modelled 7.2 24 PDB header:cytokine Chain: A: PDB Molecule:small inducible cytokine b14; PDBTitle: solution structure of brak/cxcl14 51 c3stgA_ not modelled 7.2 20 PDB header:transferase Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase; PDBTitle: crystal structure of a58p, del(n59), and loop 7 truncated mutant of 3-2 deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from3 neisseria meningitidis 52 d1p5dx4 not modelled 7.1 21 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 53 c3dz1A_ not modelled 7.1 26 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 1.87a resolution 54 c2ehhE_ not modelled 7.0 26 PDB header:lyase Chain: E: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus 55 c3e96B_ not modelled 6.8 58 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii 56 d2noca1 not modelled 6.8 31 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 57 d2a6na1 not modelled 6.8 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 58 d1o2da_ not modelled 6.7 24 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 59 c3hl0B_ not modelled 6.7 32 PDB header:oxidoreductase Chain: B: PDB Molecule:maleylacetate reductase; PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens 60 c1vhkA_ not modelled 6.7 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 61 c3lerA_ not modelled 6.4 26 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168 62 d1geqa_ not modelled 6.4 21 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 63 c2r8wB_ not modelled 6.3 37 PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 64 c3lciA_ not modelled 6.2 32 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 65 c3g0sA_ not modelled 6.1 13 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2 66 d1nxza2 not modelled 6.1 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 67 d1ejxb_ not modelled 6.0 57 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 68 c3fkkA_ not modelled 6.0 26 PDB header:lyase Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase; PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase 69 c3fluD_ not modelled 6.0 26 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis 70 c3cprB_ not modelled 5.8 32 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthetase; PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution 71 d2g7oa1 not modelled 5.8 21 Fold:TraM-like Superfamily:TraM-like Family:TraM-like 72 c3b4uB_ not modelled 5.7 16 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58 73 d1w3ia_ not modelled 5.7 6 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 74 c3gjxD_ not modelled 5.6 22 PDB header:protein transport Chain: D: PDB Molecule:exportin-1; PDBTitle: crystal structure of the nuclear export complex crm1-2 snurportin1-rangtp 75 c3n2xB_ not modelled 5.6 37 PDB header:lyase Chain: B: PDB Molecule:uncharacterized protein yage; PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate 76 c3pueA_ not modelled 5.5 42 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution 77 c2yxgD_ not modelled 5.4 42 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) 78 c2hmcA_ not modelled 5.4 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens 79 c3bi8A_ not modelled 5.4 21 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum 80 c3na8A_ not modelled 5.3 32 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of a putative dihydrodipicolinate synthetase from2 pseudomonas aeruginosa 81 d1x51a1 not modelled 5.3 17 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 82 c2kxhB_ not modelled 5.2 29 PDB header:protein binding Chain: B: PDB Molecule:peptide of far upstream element-binding protein 1; PDBTitle: solution structure of the first two rrm domains of fir in the complex2 with fbp nbox peptide 83 d1tvga_ not modelled 5.0 25 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:APC10-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0