PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3gjxD_

Fold library id	PDB Header	Molecule	Title
c3gjxD_	PDB header: protein transport	Chain: D: PDB Molecule: exportin-1;	PDBTitle: crystal structure of the nuclear export complex crm1-2 snurportin1-rangtp

Links to external resources
Added to library: Sat Aug 28 15:53:58 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A A R Q L L D F S Q K L D I N L L D N V V N C L Y H G E G A Q Q R M A Q E V L T H L K E H P D A W T R V D T I S Q N M N T K Y Y G L Q I L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T
S S T S S
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N V I K T R W K I L P R N Q C E G I K K Y V V G L I I K T S S D P T C V E K E K V Y I G K L N M I L V Q I L K Q E W P K H W P T F I S D I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G S
S
G G G G T S
T T T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G A S R T S E S L C Q N N M V I L K L L S E E V F D F S S G Q I T Q V K A K H L K D S M C N E F S Q I F Q L C Q F V M E N S Q N A P L V H A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S B
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T L E T L L R F L N W I P L G Y I F E T K L I S T L I Y K F L N V P M F R N V S L K C L T E I A G V S V S Q Y E E Q F E T L F T L T M M Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
T S S S T S S S S
S G G G

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence K Q M L P L N T N I R L A Y S N G K D D E Q N F I Q N L S L F L C T F L K E H G Q L L E K R L N L R E A L M E A L H Y M L L V S E V E E T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
T
T T
G G G T T
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence I F K I C L E Y W N H L A A E L Y R E S P F S T S A S P L L S G S Q H F D I P P R R Q L Y L T V L S K V R L L M V S R M A K P E E V L V V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S S
S
T T S
T T T
S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence N D Q G E V V R E F M K D T D S I N L Y K N M R E T L V Y L T H L D Y V D T E I I M T K K L Q N Q V N G T E W S W K N L N T L C W A I G S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
T S
T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence S G A M H E E D E K R F L V T V I K D L L G L C E Q K R G K D N K A I I A S N I M Y I V G Q Y P R F L R A H W K F L K T V V N K L F E F M H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S
S
G G G

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence E T H D G V Q D M A C D T F I K I A Q K C R R H F V Q V Q V G E V M P F I D E I L N N I N T I I C D L Q P Q Q V H T F Y E A V G Y M I G A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T G G G G T S
T T
S S
T T T T
T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence T D Q T V Q E H L I E K Y M L L P N Q V W D S I I Q Q A T K N V D I L K D P E T V K Q L G S I L K T N V R A C K A V G H P F V I Q L G R I Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
G G G G G
G G G

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence L D M L N V Y K C L S E N I S A A I Q A N G E M V T K Q P L I R S M R T V K R E T L K L I S G W V S R S N D P Q M V A E N F V P P L L D A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G S S T T
T S T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence L I D Y Q R N V P A A R E P E V L S T M A I I V N K L G G H I T A E I P Q I F D A V F E C T L N M I N K D F E E Y P E H R T N F F L L L Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G
T G G G T G G G S S
S S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence V N S H C F P A F L A I P P A Q F K L V L D S I I W A F K H T M R N V A D T G L Q I L F T L L Q N V A Q E E A A A Q S F Y Q T Y F C D I L Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T T S
T
S S T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence H I F S V V T D T S H T A G L T M H A S I L A Y M F N L V E E G K I S T P L N P G N P V N N Q M F I Q D Y V A N L L K S A F P H L Q D A Q V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
G G G T T T
S
S S
S T T
T T S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 .

Sequence K L F V T G L F S L N Q D I P A F K E H L R D F L V Q I K E F A G E D T S D L F L E E R E T A L R Q A Q E E K H K L Q M S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
T S
S S
T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	A	R	Q	L	L	D	F	S	Q	K	L	D	I	N	L	L	D	N	V	V	N	C	L	Y	H	G	E	G	A	Q	Q	R	M	A	Q	E	V	L	T	H	L	K	E	H	P	D	A	W	T	R	V	D	T	I	S	Q	N	M	N	T	K	Y	Y	G	L	Q	I	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S														T	T	T		S	S													T	S	S			S												S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	V	I	K	T	R	W	K	I	L	P	R	N	Q	C	E	G	I	K	K	Y	V	V	G	L	I	I	K	T	S	S	D	P	T	C	V	E	K	E	K	V	Y	I	G	K	L	N	M	I	L	V	Q	I	L	K	Q	E	W	P	K	H	W	P	T	F	I	S	D	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	G	G	G	S																					S		G	G	G	G	T	S																				T	T	T	T		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	A	S	R	T	S	E	S	L	C	Q	N	N	M	V	I	L	K	L	L	S	E	E	V	F	D	F	S	S	G	Q	I	T	Q	V	K	A	K	H	L	K	D	S	M	C	N	E	F	S	Q	I	F	Q	L	C	Q	F	V	M	E	N	S	Q	N	A	P	L	V	H	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																									T	T	S					B															T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	L	E	T	L	L	R	F	L	N	W	I	P	L	G	Y	I	F	E	T	K	L	I	S	T	L	I	Y	K	F	L	N	V	P	M	F	R	N	V	S	L	K	C	L	T	E	I	A	G	V	S	V	S	Q	Y	E	E	Q	F	E	T	L	F	T	L	T	M	M	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T	S		T					S	S	S									T	S	S	S																	S		S	G	G	G
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	K	Q	M	L	P	L	N	T	N	I	R	L	A	Y	S	N	G	K	D	D	E	Q	N	F	I	Q	N	L	S	L	F	L	C	T	F	L	K	E	H	G	Q	L	L	E	K	R	L	N	L	R	E	A	L	M	E	A	L	H	Y	M	L	L	V	S	E	V	E	E	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S		T	T	S								T			T	T																											G	G	G															T	T		S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	I	F	K	I	C	L	E	Y	W	N	H	L	A	A	E	L	Y	R	E	S	P	F	S	T	S	A	S	P	L	L	S	G	S	Q	H	F	D	I	P	P	R	R	Q	L	Y	L	T	V	L	S	K	V	R	L	L	M	V	S	R	M	A	K	P	E	E	V	L	V	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						S				S	S			S	S		S			T	T	S						T	T														T				S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	N	D	Q	G	E	V	V	R	E	F	M	K	D	T	D	S	I	N	L	Y	K	N	M	R	E	T	L	V	Y	L	T	H	L	D	Y	V	D	T	E	I	I	M	T	K	K	L	Q	N	Q	V	N	G	T	E	W	S	W	K	N	L	N	T	L	C	W	A	I	G	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S								S	S																																						T	S																		T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	S	G	A	M	H	E	E	D	E	K	R	F	L	V	T	V	I	K	D	L	L	G	L	C	E	Q	K	R	G	K	D	N	K	A	I	I	A	S	N	I	M	Y	I	V	G	Q	Y	P	R	F	L	R	A	H	W	K	F	L	K	T	V	V	N	K	L	F	E	F	M	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	S																							S		S																																							G	G	G
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	E	T	H	D	G	V	Q	D	M	A	C	D	T	F	I	K	I	A	Q	K	C	R	R	H	F	V	Q	V	Q	V	G	E	V	M	P	F	I	D	E	I	L	N	N	I	N	T	I	I	C	D	L	Q	P	Q	Q	V	H	T	F	Y	E	A	V	G	Y	M	I	G	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T																T	G	G	G	G	T	S			T	T		S	S								T	T						T	T																		T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	T	D	Q	T	V	Q	E	H	L	I	E	K	Y	M	L	L	P	N	Q	V	W	D	S	I	I	Q	Q	A	T	K	N	V	D	I	L	K	D	P	E	T	V	K	Q	L	G	S	I	L	K	T	N	V	R	A	C	K	A	V	G	H	P	F	V	I	Q	L	G	R	I	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T																		G	G	G	G	G																								G	G	G
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	L	D	M	L	N	V	Y	K	C	L	S	E	N	I	S	A	A	I	Q	A	N	G	E	M	V	T	K	Q	P	L	I	R	S	M	R	T	V	K	R	E	T	L	K	L	I	S	G	W	V	S	R	S	N	D	P	Q	M	V	A	E	N	F	V	P	P	L	L	D	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							G	G	G	G	S	S																						T	T											T	S							T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	L	I	D	Y	Q	R	N	V	P	A	A	R	E	P	E	V	L	S	T	M	A	I	I	V	N	K	L	G	G	H	I	T	A	E	I	P	Q	I	F	D	A	V	F	E	C	T	L	N	M	I	N	K	D	F	E	E	Y	P	E	H	R	T	N	F	F	L	L	L	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S		G	G	G			T														G	G	G	T	G	G	G																	S	S		S	S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	V	N	S	H	C	F	P	A	F	L	A	I	P	P	A	Q	F	K	L	V	L	D	S	I	I	W	A	F	K	H	T	M	R	N	V	A	D	T	G	L	Q	I	L	F	T	L	L	Q	N	V	A	Q	E	E	A	A	A	Q	S	F	Y	Q	T	Y	F	C	D	I	L	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G	T	T	T	S																	T		S	S																			T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	H	I	F	S	V	V	T	D	T	S	H	T	A	G	L	T	M	H	A	S	I	L	A	Y	M	F	N	L	V	E	E	G	K	I	S	T	P	L	N	P	G	N	P	V	N	N	Q	M	F	I	Q	D	Y	V	A	N	L	L	K	S	A	F	P	H	L	Q	D	A	Q	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T		T	T		G	G	G																T	T	T			S		S	S			S	T	T																				T	T	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.
Sequence	K	L	F	V	T	G	L	F	S	L	N	Q	D	I	P	A	F	K	E	H	L	R	D	F	L	V	Q	I	K	E	F	A	G	E	D	T	S	D	L	F	L	E	E	R	E	T	A	L	R	Q	A	Q	E	E	K	H	K	L	Q	M	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	T	T																	T	S				S	S			T	T		T	T