Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	T	V	P	T	R	S	G	S	P	R	Q	L	T	T	K	Q	T	G	D	A	W	E	A	Q	A	R	R	W	L	E	G	K	G	L	R	F	I	A	A	N	V	N	E	R	G	G	E	I	D	L	I	M	R	E	G	R	T	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	F	V	E	V	R	Y	R	R	S	A	L	Y	G	G	A	A	A	S	V	T	R	S	K	Q	H	K	L	L	Q	T	A	R	L	W	L	A	R	H	N	G	S	F	D	T	V	D	C	R	F	D	V	V	A	F	T	G	N	E	V
Secondary structure
SS confidence
Disorder																																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.
Sequence		E	W	I	K	D	A	F	N	D	H	S
Secondary structure
SS confidence
Disorder									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3fov chain A Region: 23 - 128 Aligned: 97 Modelled: 106 Confidence: 100.0% Identity: 37% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris Phyre2 PDB 1gef chain A Region: 18 - 95 Aligned: 69 Modelled: 78 Confidence: 97.8% Identity: 22% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 1ob8 chain A Region: 20 - 95 Aligned: 67 Modelled: 76 Confidence: 97.3% Identity: 21% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 2wj0 chain B Region: 20 - 95 Aligned: 70 Modelled: 76 Confidence: 96.8% Identity: 21% PDB header:hydrolase/dna Chain: B: PDB Molecule:archaeal hjc; PDBTitle: crystal structures of holliday junction resolvases from2 archaeoglobus fulgidus bound to dna substrate Phyre2 PDB 1hh1 chain A Region: 23 - 95 Aligned: 66 Modelled: 73 Confidence: 96.3% Identity: 23% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hjc-like Phyre2 PDB 1y88 chain A Region: 24 - 71 Aligned: 47 Modelled: 47 Confidence: 95.9% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1548; PDBTitle: crystal structure of protein of unknown function af1548 Phyre2 PDB 1y88 chain A domain 2 Region: 20 - 78 Aligned: 58 Modelled: 58 Confidence: 95.9% Identity: 24% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: MRR-like Phyre2 PDB 2vld chain A Region: 31 - 71 Aligned: 41 Modelled: 41 Confidence: 93.3% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi Phyre2 PDB 3dnx chain A Region: 25 - 67 Aligned: 43 Modelled: 43 Confidence: 92.1% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spo1766; PDBTitle: spo1766 protein of unknown function from silicibacter pomeroyi. Phyre2 PDB 1xmx chain A Region: 20 - 67 Aligned: 48 Modelled: 48 Confidence: 92.0% Identity: 17% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Hypothetical protein VC1899 Phyre2 PDB 2inb chain A domain 1 Region: 25 - 67 Aligned: 43 Modelled: 43 Confidence: 90.5% Identity: 19% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: XisH-like Phyre2 PDB 2okf chain A domain 1 Region: 25 - 67 Aligned: 43 Modelled: 43 Confidence: 89.7% Identity: 16% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: XisH-like Phyre2 PDB 1cw0 chain A Region: 24 - 64 Aligned: 40 Modelled: 41 Confidence: 79.5% Identity: 30% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Very short patch repair (VSR) endonuclease Phyre2 PDB 1w36 chain B domain 3 Region: 48 - 97 Aligned: 47 Modelled: 50 Confidence: 70.4% Identity: 23% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain Phyre2 PDB 1e4e chain A domain 2 Region: 21 - 92 Aligned: 64 Modelled: 72 Confidence: 68.0% Identity: 16% Fold: ATP-grasp Superfamily: Glutathione synthetase ATP-binding domain-like Family: ATP-binding domain of peptide synthetases Phyre2 PDB 1w36 chain E Region: 48 - 97 Aligned: 47 Modelled: 50 Confidence: 56.9% Identity: 23% PDB header:recombination Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain; PDBTitle: recbcd:dna complex Phyre2 PDB 1iow chain A domain 2 Region: 21 - 75 Aligned: 47 Modelled: 55 Confidence: 51.3% Identity: 13% Fold: ATP-grasp Superfamily: Glutathione synthetase ATP-binding domain-like Family: ATP-binding domain of peptide synthetases Phyre2 PDB 1uc8 chain A domain 2 Region: 24 - 84 Aligned: 51 Modelled: 61 Confidence: 38.3% Identity: 16% Fold: ATP-grasp Superfamily: Glutathione synthetase ATP-binding domain-like Family: Lysine biosynthesis enzyme LysX ATP-binding domain Phyre2 PDB 1vsr chain A Region: 24 - 64 Aligned: 40 Modelled: 41 Confidence: 32.8% Identity: 28% Fold: Restriction endonuclease-like Superfamily: Restriction endonuclease-like Family: Very short patch repair (VSR) endonuclease Phyre2 PDB 3se7 chain A Region: 21 - 92 Aligned: 64 Modelled: 72 Confidence: 32.5% Identity: 20% PDB header:ligase Chain: A: PDB Molecule:vana; PDBTitle: ancient vana Phyre2 1 c3fovA_ 2 d1gefa_ 3 d1ob8a_ 4 c2wj0B_ 5 d1hh1a_ 6 c1y88A_ 7 d1y88a2 8 c2vldA_ 9 c3dnxA_ 10 d1xmxa_ 11 d2inba1 12 d2okfa1 13 d1cw0a_ 14 d1w36b3 15 d1e4ea2 16 c1w36E_ 17 d1iowa2 18 d1uc8a2 19 d1vsra_ 20 c3se7A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3fovA_ 100.0 37 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris 2 d1gefa_ 97.8 22 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 3 d1ob8a_ 97.3 21 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 4 c2wj0B_ 96.8 21 PDB header:hydrolase/dna Chain: B: PDB Molecule:archaeal hjc; PDBTitle: crystal structures of holliday junction resolvases from2 archaeoglobus fulgidus bound to dna substrate 5 d1hh1a_ 96.3 23 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 6 c1y88A_ 95.9 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1548; PDBTitle: crystal structure of protein of unknown function af1548 7 d1y88a2 95.9 24 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:MRR-like 8 c2vldA_ 93.3 17 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 9 c3dnxA_ 92.1 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spo1766; PDBTitle: spo1766 protein of unknown function from silicibacter pomeroyi. 10 d1xmxa_ 92.0 17 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hypothetical protein VC1899 11 d2inba1 90.5 19 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XisH-like 12 d2okfa1 89.7 16 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XisH-like 13 d1cw0a_ 79.5 30 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Very short patch repair (VSR) endonuclease 14 d1w36b3 70.4 23 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Exodeoxyribonuclease V beta chain (RecB), C-terminal domain 15 d1e4ea2 68.0 16 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:ATP-binding domain of peptide synthetases 16 c1w36E_ 56.9 23 PDB header:recombination Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain; PDBTitle: recbcd:dna complex 17 d1iowa2 51.3 13 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:ATP-binding domain of peptide synthetases 18 d1uc8a2 38.3 16 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Lysine biosynthesis enzyme LysX ATP-binding domain 19 d1vsra_ 32.8 28 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Very short patch repair (VSR) endonuclease 20 c3se7A_ 32.5 20 PDB header:ligase Chain: A: PDB Molecule:vana; PDBTitle: ancient vana 21 d2j9ga3 not modelled 25.6 21 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:BC ATP-binding domain-like 22 c3tqtB_ not modelled 24.8 6 PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii 23 d1kjqa3 not modelled 24.2 18 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:BC ATP-binding domain-like 24 c3e5nA_ not modelled 23.4 11 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331 25 d1miua5 not modelled 21.6 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 26 d1ulza3 not modelled 20.4 14 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:BC ATP-binding domain-like 27 c3bpqD_ not modelled 19.1 33 PDB header:toxin Chain: D: PDB Molecule:toxin rele3; PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii 28 c3h1tA_ not modelled 18.5 18 PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 29 c2dlnA_ not modelled 17.6 13 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 30 d1ehia2 not modelled 17.5 11 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:ATP-binding domain of peptide synthetases 31 d1m0da_ not modelled 16.9 25 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Endonuclease I (Holliday junction resolvase) 32 d1tx3a1 not modelled 16.9 10 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease HincII 33 d1y0ka1 not modelled 16.3 60 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:PA4535-like 34 d1iyjb5 not modelled 15.9 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 35 d1puza_ not modelled 15.1 55 Fold:YgfY-like Superfamily:YgfY-like Family:YgfY-like 36 d1fy7a_ not modelled 14.9 16 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 37 c3i12A_ not modelled 14.9 15 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 38 c1x6iB_ not modelled 14.4 36 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ygfy; PDBTitle: crystal structure of ygfy from escherichia coli 39 d3etja3 not modelled 14.1 10 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:BC ATP-binding domain-like 40 c2jr5A_ not modelled 14.0 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0350 protein vc_2471; PDBTitle: solution structure of upf0350 protein vc_2471. northeast2 structural genomics target vcr36 41 d1j6ua1 not modelled 13.7 10 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 42 c2pvpB_ not modelled 13.3 5 PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori 43 c2cl2A_ not modelled 13.1 63 PDB header:hydrolase Chain: A: PDB Molecule:putative laminarinase; PDBTitle: endo-1,3(4)-beta-glucanase from phanerochaete chrysosporium,2 solved using native sulfur sad, exhibiting intact3 heptasaccharide glycosylation 44 d2ozua1 not modelled 13.0 22 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 45 d2fiwa1 not modelled 12.8 22 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 46 c3r23B_ not modelled 12.6 9 PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine--d-alanine ligase from bacillus2 anthracis 47 c2givA_ not modelled 12.3 22 PDB header:transferase Chain: A: PDB Molecule:probable histone acetyltransferase myst1; PDBTitle: human myst histone acetyltransferase 1 48 d2giva1 not modelled 12.3 22 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 49 d2r85a2 not modelled 11.6 13 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:PurP ATP-binding domain-like 50 d2r7ka2 not modelled 11.1 13 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:PurP ATP-binding domain-like 51 c1ulzA_ not modelled 11.1 14 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase n-terminal domain; PDBTitle: crystal structure of the biotin carboxylase subunit of pyruvate2 carboxylase 52 d1xdfa1 not modelled 10.7 9 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 53 c3hrlA_ not modelled 10.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:endonuclease-like protein; PDBTitle: crystal structure of a putative endonuclease-like protein (ngo0050)2 from neisseria gonorrhoeae 54 c2p0aA_ not modelled 9.9 13 PDB header:neuropeptide Chain: A: PDB Molecule:synapsin-3; PDBTitle: the crystal structure of human synapsin iii (syn3) in complex with2 amppnp 55 c2duwA_ not modelled 9.6 15 PDB header:ligand binding protein Chain: A: PDB Molecule:putative coa-binding protein; PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae 56 c3fqiA_ not modelled 9.6 17 PDB header:protein binding Chain: A: PDB Molecule:protein dom3z; PDBTitle: crystal structure of the mouse dom3z 57 c1uc8B_ not modelled 9.6 15 PDB header:biosynthetic protein Chain: B: PDB Molecule:lysine biosynthesis enzyme; PDBTitle: crystal structure of a lysine biosynthesis enzyme, lysx,2 from thermus thermophilus hb8 58 d1zhva2 not modelled 9.4 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 59 d2o8ra3 not modelled 9.3 36 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 60 d1p9oa_ not modelled 9.2 21 Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like 61 c3u9sE_ not modelled 9.1 23 PDB header:ligase Chain: E: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit; PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex 62 d2jfga1 not modelled 9.1 11 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 63 c1ehiB_ not modelled 9.0 13 PDB header:ligase Chain: B: PDB Molecule:d-alanine:d-lactate ligase; PDBTitle: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant2 leuconostoc mesenteroides 64 c2k7hA_ not modelled 8.7 12 PDB header:allergen Chain: A: PDB Molecule:stress-induced protein sam22; PDBTitle: nmr solution structure of soybean allergen gly m 4 65 c2ou2A_ not modelled 8.6 26 PDB header:transferase Chain: A: PDB Molecule:histone acetyltransferase htatip; PDBTitle: acetyltransferase domain of human hiv-1 tat interacting2 protein, 60kda, isoform 3 66 d2naca2 not modelled 8.6 27 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 67 d1p3da1 not modelled 8.3 18 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 68 c3uvzB_ not modelled 8.3 11 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit; PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase, atpase2 subunit from burkholderia ambifaria 69 c3s5pA_ not modelled 8.2 8 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia 70 c1e4eB_ not modelled 8.1 8 PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase 71 c3koxA_ not modelled 8.0 19 PDB header:metal binding protein Chain: A: PDB Molecule:d-ornithine aminomutase e component; PDBTitle: crystal structure of ornithine 4,5 aminomutase in complex with 2,4-2 diaminobutyrate (anaerobic) 72 c3dfuB_ not modelled 7.8 13 PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized protein from 6-phosphogluconate PDBTitle: crystal structure of a putative rossmann-like dehydrogenase (cgl2689)2 from corynebacterium glutamicum at 2.07 a resolution 73 d1gsoa3 not modelled 7.8 19 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:BC ATP-binding domain-like 74 c3cqyA_ not modelled 7.7 19 PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1 75 d2jdca1 not modelled 7.6 10 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 76 c3orqA_ not modelled 7.5 6 PDB header:ligase,biosynthetic protein Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide synthetase; PDBTitle: crystal structure of n5-carboxyaminoimidazole synthetase from2 staphylococcus aureus complexed with adp 77 c3ey5A_ not modelled 7.3 5 PDB header:transferase Chain: A: PDB Molecule:acetyltransferase-like, gnat family; PDBTitle: putative acetyltransferase from gnat family from bacteroides2 thetaiotaomicron. 78 c3bt3B_ not modelled 7.3 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:glyoxalase-related enzyme, arac type; PDBTitle: crystal structure of a glyoxalase-related enzyme from clostridium2 phytofermentans 79 d1pk8a2 not modelled 7.3 13 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Synapsin C-terminal domain 80 c2x7bA_ not modelled 7.3 16 PDB header:transferase Chain: A: PDB Molecule:n-acetyltransferase sso0209; PDBTitle: crystal structure of the n-terminal acetylase ard1 from2 sulfolobus solfataricus p2 81 c3qbwA_ not modelled 7.2 17 PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate 82 c3g3oA_ not modelled 7.0 36 PDB header:biosynthetic protein Chain: A: PDB Molecule:vacuolar transporter chaperone 2; PDBTitle: crystal structure of the cytoplasmic tunnel domain in yeast2 vtc2p 83 c1y7eA_ not modelled 7.0 15 PDB header:hydrolase Chain: A: PDB Molecule:probable m18-family aminopeptidase 1; PDBTitle: the crystal structure of aminopeptidase i from borrelia burgdorferi2 b31 84 d1u7za_ not modelled 6.9 17 Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like 85 c2i80B_ not modelled 6.5 11 PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies 86 c2qb5B_ not modelled 6.5 16 PDB header:transferase Chain: B: PDB Molecule:inositol-tetrakisphosphate 1-kinase; PDBTitle: crystal structure of human inositol 1,3,4-trisphosphate 5/6-kinase2 (itpk1) in complex with adp and mn2+ 87 c3g8cB_ not modelled 6.4 14 PDB header:ligase Chain: B: PDB Molecule:biotin carboxylase; PDBTitle: crystal stucture of biotin carboxylase in complex with2 biotin, bicarbonate, adp and mg ion 88 d1jiwi_ not modelled 6.3 23 Fold:Streptavidin-like Superfamily:beta-Barrel protease inhibitors Family:Metalloprotease inhibitor 89 c3gidB_ not modelled 6.2 22 PDB header:ligase Chain: B: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: the biotin carboxylase (bc) domain of human acetyl-coa2 carboxylase 2 (acc2) in complex with soraphen a 90 c3q2oB_ not modelled 6.2 9 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit; PDBTitle: crystal structure of purk: n5-carboxyaminoimidazole ribonucleotide2 synthetase 91 c3ie5A_ not modelled 6.2 16 PDB header:plant protein, biosynthetic protein Chain: A: PDB Molecule:phenolic oxidative coupling protein hyp-1; PDBTitle: crystal structure of hyp-1 protein from hypericum perforatum2 (st john's wort) involved in hypericin biosynthesis 92 c2rdyB_ not modelled 6.2 24 PDB header:hydrolase Chain: B: PDB Molecule:bh0842 protein; PDBTitle: crystal structure of a putative glycoside hydrolase family2 protein from bacillus halodurans 93 d1jg5a_ not modelled 6.1 25 Fold:GTP cyclohydrolase I feedback regulatory protein, GFRP Superfamily:GTP cyclohydrolase I feedback regulatory protein, GFRP Family:GTP cyclohydrolase I feedback regulatory protein, GFRP 94 d1dcja_ not modelled 6.0 14 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 95 c2pn1A_ not modelled 5.9 20 PDB header:ligase Chain: A: PDB Molecule:carbamoylphosphate synthase large subunit; PDBTitle: crystal structure of carbamoylphosphate synthase large subunit (split2 gene in mj) (zp_00538348.1) from exiguobacterium sp. 255-15 at 2.00 a3 resolution 96 c1pk8D_ not modelled 5.9 14 PDB header:membrane protein Chain: D: PDB Molecule:rat synapsin i; PDBTitle: crystal structure of rat synapsin i c domain complexed to2 ca.atp 97 c1upsB_ not modelled 5.9 50 PDB header:glycosyl hydrolase Chain: B: PDB Molecule:glcnac-alpha-1,4-gal-releasing endo-beta- PDBTitle: glcnac[alpha]1-4gal releasing endo-[beta]-galactosidase2 from clostridium perfringens 98 c1w96B_ not modelled 5.8 18 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase; PDBTitle: crystal structure of biotin carboxylase domain of acetyl-2 coenzyme a carboxylase from saccharomyces cerevisiae in3 complex with soraphen a 99 c3juuA_ not modelled 5.7 38 PDB header:hydrolase/carbohydrate Chain: A: PDB Molecule:porphyranase b; PDBTitle: crystal structure of porphyranase b (porb) from zobellia2 galactanivorans

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0