PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2vldA_

Fold library id	PDB Header	Molecule	Title
c2vldA_	PDB header: hydrolase	Chain: A: PDB Molecule: upf0286 protein pyrab01260;	PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi

Links to external resources
Added to library: Sat Aug 28 16:48:05 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X R K V I I K E N P S E E E I K E L L D L A E K H G G V V T I F A R C K V H Y E G R A K S E L G E G D R I I I I K P D G S F L I H Q N K K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T
S S S
T T S
S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E P V N W Q P P G S K V T F K E N S X I S I R R R P Y E R L E V E I I E P Y S L V V F L A E D Y E E S E A E X A N L I F E N P R V I E E G F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T T
S S
S S S
G G G T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K P I Y R E K P I R H G I V D V X G V D K D G N I V V L E L K R R K A D L H A V S Q X K R Y V D S L K E E Y G E N V R G I L V A P S L T E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S
S S
B
S
S
B

. . . . . . . . . 220 . . . . . . . .

Sequence A K K L L E K E G L E F R K L E P P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	R	K	V	I	I	K	E	N	P	S	E	E	E	I	K	E	L	L	D	L	A	E	K	H	G	G	V	V	T	I	F	A	R	C	K	V	H	Y	E	G	R	A	K	S	E	L	G	E	G	D	R	I	I	I	I	K	P	D	G	S	F	L	I	H	Q	N	K	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S					S	S																	T															S	S	S															T	T	S							S	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	P	V	N	W	Q	P	P	G	S	K	V	T	F	K	E	N	S	X	I	S	I	R	R	R	P	Y	E	R	L	E	V	E	I	I	E	P	Y	S	L	V	V	F	L	A	E	D	Y	E	E	S	E	A	E	X	A	N	L	I	F	E	N	P	R	V	I	E	E	G	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		S					T	T						S	S								S	S	S																																					G	G	G	T		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	P	I	Y	R	E	K	P	I	R	H	G	I	V	D	V	X	G	V	D	K	D	G	N	I	V	V	L	E	L	K	R	R	K	A	D	L	H	A	V	S	Q	X	K	R	Y	V	D	S	L	K	E	E	Y	G	E	N	V	R	G	I	L	V	A	P	S	L	T	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T										T	T	S									S	S		B																					S									S		B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Sequence	A	K	K	L	L	E	K	E	G	L	E	F	R	K	L	E	P	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T