Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	P	S	I	V	A	K	L	E	A	L	H	E	R	H	E	E	V	Q	A	L	L	G	D	A	Q	T	I	A	D	Q	E	R	F	R	A	L	S	R	E	Y	A	Q	L	S	D	V	S	R	C	F	T	D	W	Q	Q	V	Q	E
Secondary structure
SS confidence
Disorder		?	?																							?	?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	I	E	T	A	Q	M	M	L	D	D	P	E	M	R	E	M	A	Q	D	E	L	R	E	A	K	E	K	S	E	Q	L	E	Q	Q	L	Q	V	L	L	L	P	K	D	P	D	D	E	R	N	A	F	L	E	V	R	A	G	T	G
Secondary structure
SS confidence
Disorder															?																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	D	E	A	A	L	F	A	G	D	L	F	R	M	Y	S	R	Y	A	E	A	R	R	W	R	V	E	I	M	S	A	S	E	G	E	H	G	G	Y	K	E	I	I	A	K	I	S	G	D	G	V	Y	G	R	L	K	F	E	S	G
Secondary structure
SS confidence
Disorder																																?			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	H	R	V	Q	R	V	P	A	T	E	S	Q	G	R	I	H	T	S	A	C	T	V	A	V	M	P	E	L	P	D	A	E	L	P	D	I	N	P	A	D	L	R	I	D	T	F	R	S	S	G	A	G	G	Q	H	V	N	T	T
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?	?	?																?	?	?														?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	S	A	I	R	I	T	H	L	P	T	G	I	V	V	E	C	Q	D	E	R	S	Q	H	K	N	K	A	K	A	L	S	V	L	G	A	R	I	H	A	A	E	M	A	K	R	Q	Q	A	E	A	S	T	R	R	N	L	L	G	S
Secondary structure
SS confidence
Disorder																						?	?																																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	D	R	S	D	R	N	R	T	Y	N	F	P	Q	G	R	V	T	D	H	R	I	N	L	T	L	Y	R	L	D	E	V	M	E	G	K	L	D	M	L	I	E	P	I	I	Q	E	H	Q	A	D	Q	L	A	A	L	S	E	Q	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																												?																								?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3d5c chain X Region: 5 - 359 Aligned: 354 Modelled: 355 Confidence: 100.0% Identity: 48% PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. Phyre2 PDB 1gqe chain A Region: 8 - 347 Aligned: 338 Modelled: 330 Confidence: 100.0% Identity: 38% Fold: Release factor Superfamily: Release factor Family: Release factor Phyre2 PDB 2ihr chain 1 Region: 9 - 352 Aligned: 338 Modelled: 343 Confidence: 100.0% Identity: 35% PDB header:translation Chain: 1: PDB Molecule:peptide chain release factor 2; PDBTitle: rf2 of thermus thermophilus Phyre2 PDB 1rq0 chain A Region: 12 - 357 Aligned: 319 Modelled: 343 Confidence: 100.0% Identity: 45% Fold: Release factor Superfamily: Release factor Family: Release factor Phyre2 PDB 1zbt chain A Region: 25 - 356 Aligned: 318 Modelled: 327 Confidence: 100.0% Identity: 44% PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution Phyre2 PDB 2b3t chain B domain 1 Region: 11 - 354 Aligned: 296 Modelled: 309 Confidence: 100.0% Identity: 99% Fold: Release factor Superfamily: Release factor Family: Release factor Phyre2 PDB 2jy9 chain A Region: 208 - 320 Aligned: 113 Modelled: 113 Confidence: 99.8% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:putative trna hydrolase domain; PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220 Phyre2 PDB 2jva chain A Region: 205 - 283 Aligned: 76 Modelled: 79 Confidence: 99.8% Identity: 32% PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 Phyre2 PDB 1j26 chain A Region: 210 - 280 Aligned: 71 Modelled: 71 Confidence: 99.8% Identity: 30% Fold: dsRBD-like Superfamily: Peptidyl-tRNA hydrolase domain-like Family: Peptidyl-tRNA hydrolase domain Phyre2 PDB 3err chain B Region: 13 - 116 Aligned: 96 Modelled: 104 Confidence: 82.9% Identity: 15% PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase Phyre2 PDB 3cx3 chain A Region: 25 - 100 Aligned: 54 Modelled: 54 Confidence: 56.1% Identity: 22% PDB header:metal binding protein Chain: A: PDB Molecule:lipoprotein; PDBTitle: crystal structure analysis of the streptococcus pneumoniae2 adcaii protein Phyre2 PDB 1xvl chain A domain 1 Region: 25 - 100 Aligned: 54 Modelled: 54 Confidence: 49.9% Identity: 15% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TroA-like Phyre2 PDB 3hjt chain B Region: 25 - 156 Aligned: 90 Modelled: 96 Confidence: 46.1% Identity: 19% PDB header:cell adhesion, transport protein Chain: B: PDB Molecule:lmb; PDBTitle: structure of laminin binding protein (lmb) of streptococcus2 agalactiae a bifunctional protein with adhesin and metal3 transporting activity Phyre2 PDB 1pq4 chain A Region: 25 - 100 Aligned: 54 Modelled: 54 Confidence: 45.4% Identity: 22% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TroA-like Phyre2 PDB 1f8s chain A Region: 112 - 184 Aligned: 56 Modelled: 73 Confidence: 44.6% Identity: 30% PDB header:oxidoreductase Chain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate. Phyre2 PDB 3sja chain G Region: 1 - 54 Aligned: 53 Modelled: 54 Confidence: 44.3% Identity: 13% PDB header:hydrolase/transport protein Chain: G: PDB Molecule:golgi to er traffic protein 1; PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain Phyre2 PDB 2ps3 chain A Region: 25 - 100 Aligned: 54 Modelled: 54 Confidence: 44.2% Identity: 17% PDB header:metal transport Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: structure and metal binding properties of znua, a2 periplasmic zinc transporter from escherichia coli Phyre2 PDB 3mfq chain B Region: 25 - 100 Aligned: 54 Modelled: 54 Confidence: 42.4% Identity: 17% PDB header:metal binding protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: a glance into the metal binding specificity of troa: where elaborate2 behaviors occur in the active center Phyre2 PDB 3lay chain F Region: 3 - 53 Aligned: 49 Modelled: 51 Confidence: 41.6% Identity: 20% PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 Phyre2 PDB 3ci9 chain B Region: 1 - 24 Aligned: 24 Modelled: 24 Confidence: 41.6% Identity: 8% PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 Phyre2 1 c3d5cX_ 2 d1gqea_ 3 c2ihr1_ 4 d1rq0a_ 5 c1zbtA_ 6 d2b3tb1 7 c2jy9A_ 8 c2jvaA_ 9 d1j26a_ 10 c3errB_ 11 c3cx3A_ 12 d1xvla1 13 c3hjtB_ 14 d1pq4a_ 15 c1f8sA_ 16 c3sjaG_ 17 c2ps3A_ 18 c3mfqB_ 19 c3layF_ 20 c3ci9B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3d5cX_ 100.0 48 PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. 2 d1gqea_ 100.0 38 Fold:Release factor Superfamily:Release factor Family:Release factor 3 c2ihr1_ 100.0 35 PDB header:translation Chain: 1: PDB Molecule:peptide chain release factor 2; PDBTitle: rf2 of thermus thermophilus 4 d1rq0a_ 100.0 45 Fold:Release factor Superfamily:Release factor Family:Release factor 5 c1zbtA_ 100.0 44 PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution 6 d2b3tb1 100.0 99 Fold:Release factor Superfamily:Release factor Family:Release factor 7 c2jy9A_ 99.8 27 PDB header:hydrolase Chain: A: PDB Molecule:putative trna hydrolase domain; PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220 8 c2jvaA_ 99.8 32 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 9 d1j26a_ 99.8 30 Fold:dsRBD-like Superfamily:Peptidyl-tRNA hydrolase domain-like Family:Peptidyl-tRNA hydrolase domain 10 c3errB_ 82.9 15 PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase 11 c3cx3A_ 56.1 22 PDB header:metal binding protein Chain: A: PDB Molecule:lipoprotein; PDBTitle: crystal structure analysis of the streptococcus pneumoniae2 adcaii protein 12 d1xvla1 49.9 15 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 13 c3hjtB_ 46.1 19 PDB header:cell adhesion, transport protein Chain: B: PDB Molecule:lmb; PDBTitle: structure of laminin binding protein (lmb) of streptococcus2 agalactiae a bifunctional protein with adhesin and metal3 transporting activity 14 d1pq4a_ 45.4 22 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 15 c1f8sA_ 44.6 30 PDB header:oxidoreductase Chain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate. 16 c3sjaG_ 44.3 13 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:golgi to er traffic protein 1; PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain 17 c2ps3A_ 44.2 17 PDB header:metal transport Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: structure and metal binding properties of znua, a2 periplasmic zinc transporter from escherichia coli 18 c3mfqB_ 42.4 17 PDB header:metal binding protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: a glance into the metal binding specificity of troa: where elaborate2 behaviors occur in the active center 19 c3layF_ 41.6 20 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 20 c3ci9B_ 41.6 8 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 21 c1wpaA_ not modelled 40.1 8 PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: 1.5 angstrom crystal structure of human occludin fragment2 413-522 22 c2ogwB_ not modelled 38.0 17 PDB header:transport protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua PDBTitle: structure of abc type zinc transporter from e. coli 23 c1wleB_ not modelled 37.6 16 PDB header:ligase Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate 24 c1toaA_ not modelled 37.1 14 PDB header:binding protein Chain: A: PDB Molecule:protein (periplasmic binding protein troa); PDBTitle: periplasmic zinc binding protein troa from treponema pallidum 25 d1toaa_ not modelled 37.1 14 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 26 c2ov3A_ not modelled 36.6 24 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein component of an abc PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc2 bound 27 c2e1mA_ not modelled 36.5 25 PDB header:oxidoreductase Chain: A: PDB Molecule:l-glutamate oxidase; PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6 28 c1s1hI_ not modelled 35.5 16 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s16; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 29 c1xawA_ not modelled 35.1 8 PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: crystal structure of the cytoplasmic distal c-terminal2 domain of occludin 30 c2jyaA_ not modelled 34.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1810; PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776 31 c3qo8A_ not modelled 34.2 7 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic; PDBTitle: crystal structure of seryl-trna synthetase from candida albicans 32 d2ctka1 not modelled 33.9 14 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 33 c2zkrv_ not modelled 31.6 12 PDB header:ribosomal protein/rna Chain: V: PDB Molecule:rna expansion segment es9 part2; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 34 c3pdgA_ not modelled 30.5 20 PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 35 d1ivsa1 not modelled 30.3 16 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 36 d2vqei1 not modelled 30.0 21 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 37 d2gy9i1 not modelled 28.8 32 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 38 c3bbnI_ not modelled 27.8 21 PDB header:ribosome Chain: I: PDB Molecule:ribosomal protein s9; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 39 c2o1eB_ not modelled 27.3 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ycdh; PDBTitle: crystal structure of the metal-dependent lipoprotein ycdh2 from bacillus subtilis, northeast structural genomics3 target sr583 40 c2fsgA_ not modelled 27.0 14 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli 41 c1i4wA_ not modelled 25.3 20 PDB header:transcription Chain: A: PDB Molecule:mitochondrial replication protein mtf1; PDBTitle: the crystal structure of the transcription factor sc-mttfb2 offers intriguing insights into mitochondrial transcription 42 d1i4wa_ not modelled 25.3 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA adenine dimethylase-like 43 c2r60A_ not modelled 24.4 15 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 44 d1sd4a_ not modelled 24.4 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 45 c2zkqi_ not modelled 22.4 23 PDB header:ribosomal protein/rna Chain: I: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 46 c2lf0A_ not modelled 21.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yibl; PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scatting, nesg4 target sfr339/ocsp target sf3636 47 c2vvlD_ not modelled 21.6 20 PDB header:oxidoreductase Chain: D: PDB Molecule:monoamine oxidase n; PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger. 48 d1nj1a3 not modelled 21.5 10 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 49 d1psza_ not modelled 20.3 18 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 50 d2foka1 not modelled 20.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Restriction endonuclease FokI, N-terminal (recognition) domain 51 d2pc6a2 not modelled 19.8 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 52 c2yg4B_ not modelled 19.5 30 PDB header:oxidoreductase Chain: B: PDB Molecule:putrescine oxidase; PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine 53 d2axya1 not modelled 19.0 16 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 54 c2xzmI_ not modelled 18.8 23 PDB header:ribosome Chain: I: PDB Molecule:rps16e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 55 c1sezA_ not modelled 18.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase, mitochondrial; PDBTitle: crystal structure of protoporphyrinogen ix oxidase 56 d2fgca2 not modelled 18.8 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 57 c1xvlC_ not modelled 18.4 13 PDB header:metal transport Chain: C: PDB Molecule:mn transporter; PDBTitle: the three-dimensional structure of mntc from synechocystis2 6803 58 c3pdyB_ not modelled 18.2 21 PDB header:structural protein Chain: B: PDB Molecule:plectin; PDBTitle: structure of the third and fourth spectrin repeats of the plakin2 domain of plectin 59 d1m0da_ not modelled 17.1 17 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Endonuclease I (Holliday junction resolvase) 60 c2bbjB_ not modelled 17.0 10 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 61 c3sjbC_ not modelled 16.4 12 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:golgi to er traffic protein 1; PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain 62 d2f1fa1 not modelled 16.3 10 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 63 d2ctla1 not modelled 15.7 12 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 64 d2ctea1 not modelled 14.9 16 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 65 c3rhaA_ not modelled 14.8 26 PDB header:oxidoreductase Chain: A: PDB Molecule:putrescine oxidase; PDBTitle: the crystal structure of oxidoreductase from arthrobacter aurescens 66 c1s3bB_ not modelled 14.7 22 PDB header:oxidoreductase Chain: B: PDB Molecule:amine oxidase [flavin-containing] b; PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan 67 c3nrxB_ not modelled 14.6 14 PDB header:protein binding Chain: B: PDB Molecule:protein regulator of cytokinesis 1; PDBTitle: insights into anti-parallel microtubule crosslinking by prc1, a2 conserved non-motor microtubule binding protein 68 c2b7fD_ not modelled 14.5 40 PDB header:hydrolase/hydrolase inhibitor Chain: D: PDB Molecule:htlv protease; PDBTitle: crystal structure of human t-cell leukemia virus protease, a novel2 target for anti-cancer design 69 d1lp1a_ not modelled 14.5 24 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 70 d1nj8a3 not modelled 13.9 14 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 71 d1s05a_ not modelled 13.2 14 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 72 c3neaA_ not modelled 12.9 27 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis 73 d1djqa3 not modelled 12.9 34 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 74 c3s2xB_ not modelled 12.7 18 PDB header:transferase Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha; PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain 75 c3h0gA_ not modelled 12.7 11 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase ii subunit rpb1; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 76 d1vqov1 not modelled 12.5 18 Fold:Long alpha-hairpin Superfamily:Ribosomal protein L29 (L29p) Family:Ribosomal protein L29 (L29p) 77 c3g5rA_ not modelled 12.3 25 PDB header:transferase Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)- PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate 78 d2g5ca1 not modelled 12.2 12 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:TyrA dimerization domain-like 79 c2z2jA_ not modelled 12.1 23 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis 80 c1ztgD_ not modelled 11.4 16 PDB header:dna, rna binding protein/dna Chain: D: PDB Molecule:poly(rc)-binding protein 1; PDBTitle: human alpha polyc binding protein kh1 81 c2p90B_ not modelled 11.3 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein cgl1923; PDBTitle: the crystal structure of a protein of unknown function from2 corynebacterium glutamicum atcc 13032 82 c2dq3A_ not modelled 11.3 11 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 83 d3lada1 not modelled 11.2 23 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 84 d1dtja_ not modelled 11.2 21 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 85 c2pc6C_ not modelled 11.1 15 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 86 d2asba3 not modelled 11.0 22 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 87 d1n4ka2 not modelled 10.9 32 Fold:beta-Trefoil Superfamily:MIR domain Family:MIR domain 88 d1r73a_ not modelled 10.8 16 Fold:Long alpha-hairpin Superfamily:Ribosomal protein L29 (L29p) Family:Ribosomal protein L29 (L29p) 89 c3v2iA_ not modelled 10.7 23 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis 90 d1wvna1 not modelled 10.7 20 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 91 c2ftcB_ not modelled 10.6 23 PDB header:ribosome Chain: B: PDB Molecule:mitochondrial ribosomal protein l2; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 92 d2ho2a1 not modelled 10.6 57 Fold:WW domain-like Superfamily:WW domain Family:WW domain 93 c3on7C_ not modelled 10.6 15 PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution 94 d1hh2p3 not modelled 10.5 25 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 95 c2z9fC_ not modelled 10.4 19 PDB header:biosynthetic protein Chain: C: PDB Molecule:cellulose synthase operon protein d; PDBTitle: crystal structure of axcesd protein from acetobacter xylinum 96 c2fgcA_ not modelled 10.4 18 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima 97 c2b9yA_ not modelled 10.3 22 PDB header:isomerase Chain: A: PDB Molecule:putative aminooxidase; PDBTitle: crystal structure of cla-producing fatty acid isomerase2 from p. acnes 98 d1vk8a_ not modelled 10.3 6 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 99 d1s35a1 not modelled 10.3 9 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0