Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	H	S	H	S	H	T	S	S	H	L	P	E	D	N	N	A	R	R	L	L	Y	A	F	G	V	T	A	G	F	M	L	V	E	V	V	G	G	F	L	S	G	S	L	A	L	L	A	D	A	G	H	M	L	T	D	T	A	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	L	F	A	L	L	A	V	Q	F	S	R	R	P	P	T	I	R	H	T	F	G	W	L	R	L	T	T	L	A	A	F	V	N	A	I	A	L	V	V	I	T	I	L	I	V	W	E	A	I	E	R	F	R	T	P	R	P	V	E
Secondary structure
SS confidence
Disorder																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	G	M	M	M	A	I	A	V	A	G	L	L	A	N	I	L	S	F	W	L	L	H	H	G	S	E	E	K	N	L	N	V	R	A	A	A	L	H	V	L	G	D	L	L	G	S	V	G	A	I	I	A	A	L	I	I	I	W	T
Secondary structure
SS confidence
Disorder																											?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	W	T	P	A	D	P	I	L	S	I	L	V	S	L	L	V	L	R	S	A	W	R	L	L	K	D	S	V	N	E	L	L	E	G	A	P	V	S	L	D	I	A	E	L	K	R	R	M	C	R	E	I	P	E	V	R	N	V	H
Secondary structure
SS confidence
Disorder																																			?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		H	V	H	V	W	M	V	G	E	K	P	V	M	T	L	H	V	Q	V	I	P	P	H	D	H	D	A	L	L	D	Q	I	Q	H	Y	L	M	D	H	Y	Q	I	E	H	A	T	I	Q	M	E	Y	Q	P	C	H	G	P	D	C	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.
Sequence		L	N	E	G	V	S	G	H	S	H	H	H	H
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qfi chain B Region: 14 - 293 Aligned: 278 Modelled: 280 Confidence: 100.0% Identity: 22% PDB header:transport protein Chain: B: PDB Molecule:ferrous-iron efflux pump fief; PDBTitle: structure of the zinc transporter yiip Phyre2 PDB 2qfi chain A domain 2 Region: 14 - 215 Aligned: 201 Modelled: 201 Confidence: 100.0% Identity: 25% Fold: Cation efflux protein transmembrane domain-like Superfamily: Cation efflux protein transmembrane domain-like Family: Cation efflux protein transmembrane domain-like Phyre2 PDB 2zzt chain A Region: 215 - 294 Aligned: 78 Modelled: 79 Confidence: 99.3% Identity: 22% PDB header:transport protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the cytosolic domain of the cation2 diffusion facilitator family protein Phyre2 PDB 3byp chain A domain 1 Region: 218 - 293 Aligned: 75 Modelled: 76 Confidence: 99.3% Identity: 19% Fold: Alpha-lytic protease prodomain-like Superfamily: Cation efflux protein cytoplasmic domain-like Family: Cation efflux protein cytoplasmic domain-like Phyre2 PDB 2qfi chain A domain 1 Region: 216 - 291 Aligned: 75 Modelled: 76 Confidence: 99.2% Identity: 13% Fold: Alpha-lytic protease prodomain-like Superfamily: Cation efflux protein cytoplasmic domain-like Family: Cation efflux protein cytoplasmic domain-like Phyre2 PDB 2jsx chain A Region: 218 - 313 Aligned: 80 Modelled: 96 Confidence: 83.9% Identity: 21% PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd Phyre2 PDB 2cu6 chain A domain 1 Region: 239 - 299 Aligned: 59 Modelled: 61 Confidence: 80.7% Identity: 12% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: PaaD-like Phyre2 PDB 1uwd chain A Region: 213 - 299 Aligned: 87 Modelled: 87 Confidence: 68.4% Identity: 8% Fold: Alpha-lytic protease prodomain-like Superfamily: Fe-S cluster assembly (FSCA) domain-like Family: PaaD-like Phyre2 PDB 3lno chain A Region: 219 - 298 Aligned: 80 Modelled: 80 Confidence: 49.3% Identity: 11% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis Phyre2 PDB 2jp3 chain A Region: 72 - 108 Aligned: 37 Modelled: 37 Confidence: 38.7% Identity: 14% PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles Phyre2 PDB 2zxe chain G Region: 74 - 108 Aligned: 34 Modelled: 35 Confidence: 30.1% Identity: 29% PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state Phyre2 PDB 3b9y chain A Region: 52 - 196 Aligned: 124 Modelled: 129 Confidence: 27.5% Identity: 15% PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Phyre2 PDB 3pds chain A Region: 123 - 215 Aligned: 93 Modelled: 93 Confidence: 25.0% Identity: 9% PDB header:membrane protein/hydrolase Chain: A: PDB Molecule:fusion protein beta-2 adrenergic receptor/lysozyme; PDBTitle: irreversible agonist-beta2 adrenoceptor complex Phyre2 PDB 2kps chain A Region: 281 - 313 Aligned: 23 Modelled: 33 Confidence: 22.6% Identity: 35% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of domain iv from the ybbr family protein of2 desulfitobacterium hafniense Phyre2 PDB 2k2p chain A Region: 255 - 290 Aligned: 36 Modelled: 36 Confidence: 21.2% Identity: 3% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 Phyre2 PDB 1v55 chain B Region: 38 - 119 Aligned: 82 Modelled: 82 Confidence: 20.6% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state Phyre2 PDB 1dlc chain A domain 3 Region: 163 - 229 Aligned: 66 Modelled: 67 Confidence: 20.4% Identity: 12% Fold: Toxins' membrane translocation domains Superfamily: delta-Endotoxin (insectocide), N-terminal domain Family: delta-Endotoxin (insectocide), N-terminal domain Phyre2 PDB 1u19 chain A Region: 123 - 215 Aligned: 93 Modelled: 93 Confidence: 19.8% Identity: 15% Fold: Family A G protein-coupled receptor-like Superfamily: Family A G protein-coupled receptor-like Family: Rhodopsin-like Phyre2 PDB 1ji6 chain A domain 3 Region: 163 - 229 Aligned: 66 Modelled: 67 Confidence: 19.8% Identity: 17% Fold: Toxins' membrane translocation domains Superfamily: delta-Endotoxin (insectocide), N-terminal domain Family: delta-Endotoxin (insectocide), N-terminal domain Phyre2 PDB 1oy8 chain A Region: 215 - 278 Aligned: 63 Modelled: 64 Confidence: 18.8% Identity: 13% PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump Phyre2 1 c2qfiB_ 2 d2qfia2 3 c2zztA_ 4 d3bypa1 5 d2qfia1 6 c2jsxA_ 7 d2cu6a1 8 d1uwda_ 9 c3lnoA_ 10 c2jp3A_ 11 c2zxeG_ 12 c3b9yA_ 13 c3pdsA_ 14 c2kpsA_ 15 c2k2pA_ 16 c1v55B_ 17 d1dlca3 18 d1u19a_ 19 d1ji6a3 20 c1oy8A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qfiB_ 100.0 22 PDB header:transport protein Chain: B: PDB Molecule:ferrous-iron efflux pump fief; PDBTitle: structure of the zinc transporter yiip 2 d2qfia2 100.0 25 Fold:Cation efflux protein transmembrane domain-like Superfamily:Cation efflux protein transmembrane domain-like Family:Cation efflux protein transmembrane domain-like 3 c2zztA_ 99.3 22 PDB header:transport protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the cytosolic domain of the cation2 diffusion facilitator family protein 4 d3bypa1 99.3 19 Fold:Alpha-lytic protease prodomain-like Superfamily:Cation efflux protein cytoplasmic domain-like Family:Cation efflux protein cytoplasmic domain-like 5 d2qfia1 99.2 13 Fold:Alpha-lytic protease prodomain-like Superfamily:Cation efflux protein cytoplasmic domain-like Family:Cation efflux protein cytoplasmic domain-like 6 c2jsxA_ 83.9 21 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd 7 d2cu6a1 80.7 12 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 8 d1uwda_ 68.4 8 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 9 c3lnoA_ 49.3 11 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis 10 c2jp3A_ 38.7 14 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 11 c2zxeG_ 30.1 29 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 12 c3b9yA_ 27.5 15 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 13 c3pdsA_ 25.0 9 PDB header:membrane protein/hydrolase Chain: A: PDB Molecule:fusion protein beta-2 adrenergic receptor/lysozyme; PDBTitle: irreversible agonist-beta2 adrenoceptor complex 14 c2kpsA_ 22.6 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of domain iv from the ybbr family protein of2 desulfitobacterium hafniense 15 c2k2pA_ 21.2 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 16 c1v55B_ 20.6 15 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state 17 d1dlca3 20.4 12 Fold:Toxins' membrane translocation domains Superfamily:delta-Endotoxin (insectocide), N-terminal domain Family:delta-Endotoxin (insectocide), N-terminal domain 18 d1u19a_ 19.8 15 Fold:Family A G protein-coupled receptor-like Superfamily:Family A G protein-coupled receptor-like Family:Rhodopsin-like 19 d1ji6a3 19.8 17 Fold:Toxins' membrane translocation domains Superfamily:delta-Endotoxin (insectocide), N-terminal domain Family:delta-Endotoxin (insectocide), N-terminal domain 20 c1oy8A_ 18.8 13 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 21 c2ksaA_ not modelled 16.0 4 PDB header:neuropeptide receptor/neuropeptide Chain: A: PDB Molecule:substance-p receptor; PDBTitle: substance p in dmpc/chaps isotropic q=0.25 bicelles as a ligand for2 nk1r 22 d1i1ga2 not modelled 16.0 11 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 23 d1ddfa_ not modelled 15.7 24 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 24 c2jo1A_ not modelled 15.4 35 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 25 c3rkoK_ not modelled 15.1 14 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 26 c1ji6A_ not modelled 14.1 17 PDB header:toxin Chain: A: PDB Molecule:pesticidial crystal protein cry3bb; PDBTitle: crystal structure of the insecticidal bacterial del2 endotoxin cry3bb1 bacillus thuringiensis 27 d1x38a2 not modelled 13.9 8 Fold:Flavodoxin-like Superfamily:Beta-D-glucan exohydrolase, C-terminal domain Family:Beta-D-glucan exohydrolase, C-terminal domain 28 c2vt4D_ not modelled 13.8 11 PDB header:receptor Chain: D: PDB Molecule:beta1 adrenergic receptor; PDBTitle: turkey beta1 adrenergic receptor with stabilising mutations2 and bound cyanopindolol 29 c1u8sB_ not modelled 13.6 6 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 30 c3mc8A_ not modelled 12.1 14 PDB header:membrane protein Chain: A: PDB Molecule:alr2269 protein; PDBTitle: potra1-3 of the periplasmic domain of omp85 from anabaena 31 c2ziyA_ not modelled 12.0 8 PDB header:signaling protein Chain: A: PDB Molecule:rhodopsin; PDBTitle: crystal structure of squid rhodopsin 32 d1fftb2 not modelled 11.9 10 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 33 c3eb7B_ not modelled 11.6 17 PDB header:toxin Chain: B: PDB Molecule:insecticidal delta-endotoxin cry8ea1; PDBTitle: crystal structure of insecticidal delta-endotoxin cry8ea1 from2 bacillus thuringiensis at 2.2 angstroms resolution 34 c2djwF_ not modelled 11.6 21 PDB header:unknown function Chain: F: PDB Molecule:probable transcriptional regulator, asnc family; PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8 35 c2kj5A_ not modelled 11.4 40 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of a domain from a putative phage2 integrase protein nmul_a0064 from nitrosospira multiformis,3 northeast structural genomics consortium target nmr46c 36 c3ibwA_ not modelled 10.9 13 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 37 c2crlA_ not modelled 10.6 17 PDB header:chaperone Chain: A: PDB Molecule:copper chaperone for superoxide dismutase; PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase 38 c2zbcH_ not modelled 10.3 21 PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. 39 c2rh1A_ not modelled 10.3 9 PDB header:membrane protein / hydrolase Chain: A: PDB Molecule:beta-2-adrenergic receptor/t4-lysozyme chimera; PDBTitle: high resolution crystal structure of human b2-adrenergic g protein-2 coupled receptor. 40 d2cg4a2 not modelled 10.3 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 41 d1iwga1 not modelled 9.1 13 Fold:Ferredoxin-like Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 42 c3rzeA_ not modelled 9.0 6 PDB header:hydrolase Chain: A: PDB Molecule:histamine h1 receptor, lysozyme chimera; PDBTitle: structure of the human histamine h1 receptor in complex with doxepin 43 c1ex1A_ not modelled 8.9 8 PDB header:hydrolase Chain: A: PDB Molecule:protein (beta-d-glucan exohydrolase isoenzyme exo1); PDBTitle: beta-d-glucan exohydrolase from barley 44 c2kt9A_ not modelled 8.7 35 PDB header:ribosomal protein Chain: A: PDB Molecule:probable 30s ribosomal protein psrp-3; PDBTitle: solution nmr structure of probable 30s ribosomal protein2 psrp-3 (ycf65-like protein) from synechocystis sp. (strain3 pcc 6803), northeast structural genomics consortium target4 target sgr46 45 c3emlA_ not modelled 8.5 23 PDB header:membrane protein, receptor Chain: A: PDB Molecule:human adenosine a2a receptor/t4 lysozyme chimera; PDBTitle: the 2.6 a crystal structure of a human a2a adenosine2 receptor bound to zm241385. 46 c2e1aD_ not modelled 8.5 18 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 47 c1dlcA_ not modelled 8.5 12 PDB header:toxin Chain: A: PDB Molecule:delta-endotoxin cryiiia; PDBTitle: crystal structure of insecticidal delta-endotoxin from2 bacillus thuringiensis at 2.5 angstroms resolution 48 d1s6ua_ not modelled 8.4 3 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 49 c2aj1A_ not modelled 7.7 3 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 50 d1rl2a2 not modelled 7.7 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 51 d1ysja2 not modelled 7.7 9 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 52 c2l3mA_ not modelled 7.6 7 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 53 c2kppA_ not modelled 7.4 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0431 protein; PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112 54 c2k5eA_ not modelled 7.4 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195 55 c2yvxD_ not modelled 7.4 15 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 56 c3aynA_ not modelled 7.3 8 PDB header:signaling protein Chain: A: PDB Molecule:rhodopsin; PDBTitle: crystal structure of squid isorhodopsin 57 c2z73A_ not modelled 7.3 8 PDB header:membrane protein Chain: A: PDB Molecule:rhodopsin; PDBTitle: crystal structure of squid rhodopsin 58 c3aymA_ not modelled 7.3 8 PDB header:signaling protein Chain: A: PDB Molecule:rhodopsin; PDBTitle: crystal structure of the batho intermediate of squid rhodopsin 59 c2rogA_ not modelled 7.3 7 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 60 c2jxpA_ not modelled 7.1 38 PDB header:lipoprotein Chain: A: PDB Molecule:putative lipoprotein b; PDBTitle: solution nmr structure of uncharacterized lipoprotein b2 from nitrosomonas europaea. northeast structural genomics3 target ner45a 61 d3ehbb2 not modelled 6.8 14 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 62 c2kt2A_ not modelled 6.7 10 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 63 c3ac0B_ not modelled 6.7 13 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 64 c3dxsX_ not modelled 6.7 13 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 65 c1i1gA_ not modelled 6.7 11 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus 66 c3pblB_ not modelled 6.6 17 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:d(3) dopamine receptor, lysozyme chimera; PDBTitle: structure of the human dopamine d3 receptor in complex with2 eticlopride 67 d1ln6a_ not modelled 6.6 15 Fold:Family A G protein-coupled receptor-like Superfamily:Family A G protein-coupled receptor-like Family:Rhodopsin-like 68 d2qamc2 not modelled 6.4 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 69 c2ropA_ not modelled 6.4 9 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of domains 3 and 4 of human atp7b 70 c2b2hA_ not modelled 6.3 15 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) 71 c3n23E_ not modelled 6.3 10 PDB header:hydrolase Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump 72 c1yg0A_ not modelled 6.3 13 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 73 c2z73B_ not modelled 6.2 8 PDB header:membrane protein Chain: B: PDB Molecule:rhodopsin; PDBTitle: crystal structure of squid rhodopsin 74 c3aynB_ not modelled 6.2 8 PDB header:signaling protein Chain: B: PDB Molecule:rhodopsin; PDBTitle: crystal structure of squid isorhodopsin 75 d2qifa1 not modelled 6.1 3 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 76 c2l3bA_ not modelled 5.9 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of the bt_0084 lipoprotein from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr376 77 c3oe6A_ not modelled 5.9 10 PDB header:signaling protein,hydrolase Chain: A: PDB Molecule:c-x-c chemokine receptor type 4, lysozyme chimera; PDBTitle: crystal structure of the cxcr4 chemokine receptor in complex with a2 small molecule antagonist it1t in i222 spacegroup 78 d1cpza_ not modelled 5.9 7 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 79 c2jmrA_ not modelled 5.9 63 PDB header:cell adhesion Chain: A: PDB Molecule:fimf; PDBTitle: nmr structure of the e. coli type 1 pilus subunit fimf 80 c3ftjA_ not modelled 5.8 10 PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans 81 c2e7xA_ not modelled 5.8 16 PDB header:transcription regulator Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator; PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand 82 c2ofhX_ not modelled 5.8 14 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 83 c2kcqA_ not modelled 5.7 55 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mov34/mpn/pad-1 family; PDBTitle: solution structure of protein sru_2040 from salinibacter2 ruber (strain dsm 13855) . northeast structural genomics3 consortium target srr106 84 d2hiya1 not modelled 5.7 11 Fold:SP0830-like Superfamily:SP0830-like Family:SP0830-like 85 c2lc4A_ not modelled 5.6 50 PDB header:structural protein Chain: A: PDB Molecule:pilp protein; PDBTitle: solution structure of pilp from pseudomonas aeruginosa 86 c3sn6R_ not modelled 5.6 10 PDB header:signaling protein/hydrolase Chain: R: PDB Molecule:lysozyme, beta-2 adrenergic receptor; PDBTitle: crystal structure of the beta2 adrenergic receptor-gs protein complex 87 d1v54b2 not modelled 5.5 17 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 88 c2ga7A_ not modelled 5.4 7 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 89 c2iqcA_ not modelled 5.4 18 PDB header:protein binding Chain: A: PDB Molecule:fanconi anemia group f protein; PDBTitle: crystal structure of human fancf protein that functions in2 the assembly of a dna damage signaling complex 90 c2zw2B_ not modelled 5.3 8 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein sts178; PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs) 91 c2cg4B_ not modelled 5.3 13 PDB header:transcription Chain: B: PDB Molecule:regulatory protein asnc; PDBTitle: structure of e.coli asnc 92 c2js4A_ not modelled 5.3 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 93 c2k49A_ not modelled 5.2 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein so_3888; PDBTitle: solution nmr structure of upf0339 protein so3888 from shewanella2 oneidensis. northeast structural genomics consortium target sor190 94 d1u8sa2 not modelled 5.2 4 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 95 d2cyya2 not modelled 5.2 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 96 c3lq9B_ not modelled 5.2 12 PDB header:signaling protein Chain: B: PDB Molecule:dna-damage-inducible transcript 4 protein; PDBTitle: crystal strucure of human redd1, a hypoxia-induced regulator2 of mtor 97 c3g79A_ not modelled 5.1 70 PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0