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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2ziyA_

Fold library idPDB HeaderMoleculeTitle
c2ziyA_PDB header: signaling proteinChain: A: PDB Molecule: rhodopsin;PDBTitle: crystal structure of squid rhodopsin


Added to library: Tue Mar 16 13:38:10 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DLRDNETWWYNPSIIVHPHWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFI
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Known secondary structure (DSSP)

S

S
TT

TTS


SS




GGG

GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence INLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAA
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Known secondary structure (DSSP) STTTTS

S
TTS
GGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence SKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPI
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Known secondary structure (DSSP)




GGGGTSS

TTSSS

S


TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALL
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Known secondary structure (DSSP) TTSSSS
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence AQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETEDDKDAETE
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Known secondary structure (DSSP) S
TTT

GGGTTT

GGGGGGS


TTTTS

 .........360.........370
Sequence IPAGESSDAAPSADAAQMKE
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Known secondary structure (DSSP)
SSS


SS





S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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