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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3aymA_

Fold library idPDB HeaderMoleculeTitle
c3aymA_PDB header: signaling proteinChain: A: PDB Molecule: rhodopsin;PDBTitle: crystal structure of the batho intermediate of squid rhodopsin


Added to library: Sat Aug 20 11:31:23 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ETWWYNPSIVVHPHWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAF
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Known secondary structure (DSSP)

SS

TTS


SS




STT
STT
 .........80.........90.........100.........110.........120.........130.........140
Sequence SDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMS
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Known secondary structure (DSSP) STTTS

STTS
TTT




 .........150.........160.........170.........180.........190.........200.........210
Sequence HRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFF
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Known secondary structure (DSSP) TTSGGGTTSS

TTSSS

S

STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence CYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGP
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Known secondary structure (DSSP) TTTTT

TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGE
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Known secondary structure (DSSP) TTT

GGGT
STTTTSTT


GGGGS

SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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