Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	W	L	L	A	A	G	L	G	L	A	L	A	T	S	A	Q	A	A	D	K	I	A	I	V	N	M	G	S	L	F	Q	Q	V	A	Q	K	T	G	V	S	N	T	L	E	N	E	F	K	G	R	A	S	E	L	Q	R	M
Secondary structure
SS confidence
Disorder		?															?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	T	D	L	Q	A	K	M	K	K	L	Q	S	M	K	A	G	S	D	R	T	K	L	E	K	D	V	M	A	Q	R	Q	T	F	A	Q	K	A	Q	A	F	E	Q	D	R	A	R	R	S	N	E	E	R	G	K	L	V	T	R	I
Secondary structure
SS confidence
Disorder															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Sequence		Q	T	A	V	K	S	V	A	N	S	Q	D	I	D	L	V	V	D	A	N	A	V	A	Y	N	S	S	D	V	K	D	I	T	A	D	V	L	K	Q	V	K
Secondary structure
SS confidence
Disorder																																									?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1u2m chain A Region: 90 - 161 Aligned: 72 Modelled: 72 Confidence: 99.3% Identity: 81% Fold: OmpH-like Superfamily: OmpH-like Family: OmpH-like Phyre2 PDB 1di6 chain A Region: 117 - 160 Aligned: 41 Modelled: 44 Confidence: 85.1% Identity: 17% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MogA-like Phyre2 PDB 2f7w chain A domain 1 Region: 117 - 160 Aligned: 41 Modelled: 44 Confidence: 80.2% Identity: 24% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MogA-like Phyre2 PDB 1mkz chain A Region: 117 - 160 Aligned: 41 Modelled: 44 Confidence: 75.3% Identity: 17% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MogA-like Phyre2 PDB 1uuy chain A Region: 117 - 160 Aligned: 41 Modelled: 44 Confidence: 74.9% Identity: 22% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MogA-like Phyre2 PDB 2is8 chain A Region: 117 - 160 Aligned: 41 Modelled: 44 Confidence: 72.8% Identity: 15% PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 Phyre2 PDB 1jlj chain A Region: 117 - 160 Aligned: 41 Modelled: 44 Confidence: 71.3% Identity: 15% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MogA-like Phyre2 PDB 1y5e chain A domain 1 Region: 117 - 160 Aligned: 41 Modelled: 44 Confidence: 68.5% Identity: 22% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MogA-like Phyre2 PDB 2v8s chain V Region: 48 - 129 Aligned: 82 Modelled: 82 Confidence: 64.6% Identity: 16% PDB header:protein transport Chain: V: PDB Molecule:vesicle transport through interaction with PDBTitle: vti1b habc domain - epsinr enth domain complex Phyre2 PDB 2pjk chain A Region: 117 - 160 Aligned: 41 Modelled: 44 Confidence: 64.2% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii Phyre2 PDB 2kru chain A Region: 116 - 136 Aligned: 21 Modelled: 21 Confidence: 49.2% Identity: 10% PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: solution nmr structure of the pcp_red domain of light-2 independent protochlorophyllide reductase subunit b from3 chlorobium tepidum. northeast structural genomics4 consortium target ctr69a (casp target) Phyre2 PDB 2l09 chain A Region: 116 - 136 Aligned: 21 Modelled: 21 Confidence: 46.4% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:asr4154 protein; PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143 Phyre2 PDB 1nfo chain A Region: 33 - 130 Aligned: 97 Modelled: 98 Confidence: 42.1% Identity: 10% PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein e2; PDBTitle: apolipoprotein e2 (apoe2, d154a mutation) Phyre2 PDB 2gts chain A domain 1 Region: 41 - 105 Aligned: 64 Modelled: 65 Confidence: 41.3% Identity: 13% Fold: Ferritin-like Superfamily: HP0062-like Family: HP0062-like Phyre2 PDB 1gs9 chain A Region: 33 - 130 Aligned: 97 Modelled: 98 Confidence: 39.5% Identity: 6% Fold: Four-helical up-and-down bundle Superfamily: Apolipoprotein Family: Apolipoprotein Phyre2 PDB 3rfq chain C Region: 117 - 160 Aligned: 40 Modelled: 44 Confidence: 38.0% Identity: 20% PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum Phyre2 PDB 3lay chain F Region: 34 - 107 Aligned: 72 Modelled: 74 Confidence: 30.9% Identity: 11% PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 Phyre2 PDB 2qhk chain A Region: 78 - 147 Aligned: 70 Modelled: 70 Confidence: 26.9% Identity: 7% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of methyl-accepting chemotaxis protein from vibrio2 parahaemolyticus rimd 2210633 Phyre2 PDB 2g2c chain A domain 1 Region: 117 - 160 Aligned: 40 Modelled: 44 Confidence: 22.5% Identity: 13% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MogA-like Phyre2 PDB 2pu9 chain A domain 1 Region: 117 - 160 Aligned: 33 Modelled: 44 Confidence: 22.3% Identity: 24% Fold: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain Superfamily: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain Family: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain Phyre2 1 d1u2ma_ 2 d1di6a_ 3 d2f7wa1 4 d1mkza_ 5 d1uuya_ 6 c2is8A_ 7 d1jlja_ 8 d1y5ea1 9 c2v8sV_ 10 c2pjkA_ 11 c2kruA_ 12 c2l09A_ 13 c1nfoA_ 14 d2gtsa1 15 d1gs9a_ 16 c3rfqC_ 17 c3layF_ 18 c2qhkA_ 19 d2g2ca1 20 d2pu9a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1u2ma_ 99.3 81 Fold:OmpH-like Superfamily:OmpH-like Family:OmpH-like 2 d1di6a_ 85.1 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 3 d2f7wa1 80.2 24 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 4 d1mkza_ 75.3 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 5 d1uuya_ 74.9 22 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 6 c2is8A_ 72.8 15 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 7 d1jlja_ 71.3 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 8 d1y5ea1 68.5 22 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 9 c2v8sV_ 64.6 16 PDB header:protein transport Chain: V: PDB Molecule:vesicle transport through interaction with PDBTitle: vti1b habc domain - epsinr enth domain complex 10 c2pjkA_ 64.2 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 11 c2kruA_ 49.2 10 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: solution nmr structure of the pcp_red domain of light-2 independent protochlorophyllide reductase subunit b from3 chlorobium tepidum. northeast structural genomics4 consortium target ctr69a (casp target) 12 c2l09A_ 46.4 14 PDB header:oxidoreductase Chain: A: PDB Molecule:asr4154 protein; PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143 13 c1nfoA_ 42.1 10 PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein e2; PDBTitle: apolipoprotein e2 (apoe2, d154a mutation) 14 d2gtsa1 41.3 13 Fold:Ferritin-like Superfamily:HP0062-like Family:HP0062-like 15 d1gs9a_ 39.5 6 Fold:Four-helical up-and-down bundle Superfamily:Apolipoprotein Family:Apolipoprotein 16 c3rfqC_ 38.0 20 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 17 c3layF_ 30.9 11 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 18 c2qhkA_ 26.9 7 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of methyl-accepting chemotaxis protein from vibrio2 parahaemolyticus rimd 2210633 19 d2g2ca1 22.5 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 20 d2pu9a1 22.3 24 Fold:Ferredoxin thioredoxin reductase (FTR), catalytic beta chain Superfamily:Ferredoxin thioredoxin reductase (FTR), catalytic beta chain Family:Ferredoxin thioredoxin reductase (FTR), catalytic beta chain 21 c3huuC_ not modelled 21.4 4 PDB header:transcription regulator Chain: C: PDB Molecule:transcription regulator like protein; PDBTitle: crystal structure of transcription regulator like protein from2 staphylococcus haemolyticus 22 c3l49D_ not modelled 20.7 4 PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 23 d2iaza1 not modelled 20.5 11 Fold:YheA-like Superfamily:YheA/YmcA-like Family:YheA-like 24 c3rotA_ not modelled 19.5 21 PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila 25 c1deqO_ not modelled 18.2 10 PDB header: PDB COMPND: 26 c2xpdC_ not modelled 17.1 29 PDB header:oxidoreductase Chain: C: PDB Molecule:thiol peroxidase; PDBTitle: reduced thiol peroxidase (tpx) from yersinia pseudotuberculosis 27 d1guda_ not modelled 16.9 4 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 28 c2vk2A_ not modelled 16.8 21 PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein 29 c2qvcC_ not modelled 15.6 13 PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima 30 c3brsA_ not modelled 15.5 13 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans 31 c3ghgK_ not modelled 14.9 9 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 32 c1jyeA_ not modelled 14.7 25 PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution 33 d1jyea_ not modelled 14.7 25 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 34 d1tlfa_ not modelled 13.6 29 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 35 c3dbiA_ not modelled 12.8 13 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate 36 d1fxkc_ not modelled 12.7 10 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 37 d8abpa_ not modelled 12.4 4 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 38 d1byka_ not modelled 12.2 9 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 39 c3g1wB_ not modelled 12.1 9 PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans 40 c3jy6B_ not modelled 11.9 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis 41 c3bblA_ not modelled 11.8 4 PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans 42 c3kbqA_ not modelled 11.8 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum 43 c3fosA_ not modelled 11.6 8 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of two-component sensor histidine kinase domain from2 bacillus subtilis subsp. subtilis str. 168 44 d1myla_ not modelled 11.4 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 45 c2jugB_ not modelled 11.2 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:tubc protein; PDBTitle: multienzyme docking in hybrid megasynthetases 46 c3l6uA_ not modelled 11.2 21 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum 47 c3clkB_ not modelled 11.1 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum 48 d2etda1 not modelled 10.9 11 Fold:Bromodomain-like Superfamily:LemA-like Family:LemA-like 49 c3khnB_ not modelled 10.9 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. 50 c3hcwB_ not modelled 10.8 3 PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus 51 c3bilA_ not modelled 10.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable laci-family transcriptional regulator; PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum 52 c2rgyA_ not modelled 10.5 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum 53 c3ksmA_ not modelled 10.3 8 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis 54 c3d02A_ not modelled 10.1 9 PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution 55 c3ma0A_ not modelled 9.8 13 PDB header:sugar binding protein Chain: A: PDB Molecule:d-xylose-binding periplasmic protein; PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli 56 c1deqF_ not modelled 9.8 4 PDB header: PDB COMPND: 57 d1b28a_ not modelled 9.6 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 58 d1u00a1 not modelled 9.4 6 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Heat shock protein 70kD (HSP70), C-terminal subdomain Family:Heat shock protein 70kD (HSP70), C-terminal subdomain 59 d1mylb_ not modelled 9.4 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 60 c1ei3E_ not modelled 9.0 11 PDB header: PDB COMPND: 61 d2nqra3 not modelled 8.9 23 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 62 c3kkeA_ not modelled 8.8 13 PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis 63 c2g4rB_ not modelled 8.8 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga 64 c3brqA_ not modelled 8.7 9 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg 65 c2o20H_ not modelled 8.7 13 PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis 66 d2nzug1 not modelled 8.6 4 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 67 d1qb5d_ not modelled 8.5 24 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 68 c2h0aA_ not modelled 8.3 22 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus 69 d1st6a6 not modelled 8.2 8 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 70 c3ixrA_ not modelled 8.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: crystal structure of xylella fastidiosa prxq c47s mutant 71 c3k4hA_ not modelled 8.2 13 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 72 c2y3mA_ not modelled 8.2 15 PDB header:transport protein Chain: A: PDB Molecule:protein transport protein hofq; PDBTitle: structure of the extra-membranous domain of the secretin2 hofq from actinobacillus actinomycetemcomitans 73 c1u00A_ not modelled 8.2 8 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein hsca; PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc 74 c3e61A_ not modelled 8.1 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus 75 c2fn9A_ not modelled 7.9 8 PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form 76 c3gybB_ not modelled 7.9 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum 77 d2piha1 not modelled 7.9 8 Fold:YheA-like Superfamily:YheA/YmcA-like Family:YmcA-like 78 c2pihA_ not modelled 7.9 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ymca; PDBTitle: crystal structure of protein ymca from bacillus subtilis,2 northeast structural genomics target sr375 79 c2ja9A_ not modelled 7.8 10 PDB header:rna-binding protein Chain: A: PDB Molecule:exosome complex exonuclease rrp40; PDBTitle: structure of the n-terminal deletion of yeast exosome2 component rrp40 80 c2eq7C_ not modelled 7.6 7 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 81 c3hnwB_ not modelled 7.6 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 82 c3o74A_ not modelled 7.6 17 PDB header:transcription Chain: A: PDB Molecule:fructose transport system repressor frur; PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida 83 c3g85A_ not modelled 7.6 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum 84 c3cs3A_ not modelled 7.5 17 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 85 c2ywnA_ not modelled 7.5 25 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin-like protein; PDBTitle: crystal structure of peroxiredoxin-like protein from2 sulfolobus tokodaii 86 c2rjoA_ not modelled 7.5 21 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 87 c3e3mA_ not modelled 7.4 9 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi 88 c2eq8C_ not modelled 7.3 21 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 89 c3gknA_ not modelled 7.1 10 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures 90 d2oeea1 not modelled 7.1 10 Fold:YheA-like Superfamily:YheA/YmcA-like Family:YheA-like 91 c3onjA_ not modelled 7.0 13 PDB header:protein transport Chain: A: PDB Molecule:t-snare vti1; PDBTitle: crystal structure of yeast vti1p_habc domain 92 c2eq9C_ not modelled 7.0 21 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 93 c3h75A_ not modelled 7.0 13 PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens 94 d1sx5a_ not modelled 7.0 6 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRV 95 d1dbqa_ not modelled 7.0 17 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 96 d1tjya_ not modelled 6.9 13 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 97 c2kngA_ not modelled 6.8 13 PDB header:dna binding protein Chain: A: PDB Molecule:protein lsr2; PDBTitle: solution structure of c-domain of lsr2 98 d2nn6h3 not modelled 6.6 6 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 99 c3liaA_ not modelled 6.6 9 PDB header:signaling protein Chain: A: PDB Molecule:hypothetical sensory transduction histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase mmhk1s-z2

Binding site prediction

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0