PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3liaA_

Fold library id	PDB Header	Molecule	Title
c3liaA_	PDB header: signaling protein	Chain: A: PDB Molecule: hypothetical sensory transduction histidine kinase;	PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase mmhk1s-z2

Links to external resources
Added to library: Sun Aug 29 03:11:31 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K L A Y E K S I E M A G N Y A N Q F D A Q M E A N Q A I A R T L A C T M A E Y G S Q D R E E A M S I I K R I L N E N P Q L I G V Y L G Y E P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D A F D G R D K N Y I N A P G H D S T G R F V P Y C N K I N G P V I I E P L V H Y D S S D Y Y Q L P K T T G K D T L T E P Y F Y E G I F M V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S
G G G
T T
T T
T T
T T S S
T T T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S Y D S P I F K N G E F A G I A G V D V P L E Y V D D V A S S I R T F D T G Y A F M V S N T G I F L S H P T Q K N W I G E K S L S D F D V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
B T T T B
T T
B B S
S S
G G G T T T
B G G G S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . .

Sequence E I K N A A S D I R E G I G G H V E I K D P I T G K T V I M F Y E P V K T G D F S F V L V V P K E E M L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T T T G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	L	A	Y	E	K	S	I	E	M	A	G	N	Y	A	N	Q	F	D	A	Q	M	E	A	N	Q	A	I	A	R	T	L	A	C	T	M	A	E	Y	G	S	Q	D	R	E	E	A	M	S	I	I	K	R	I	L	N	E	N	P	Q	L	I	G	V	Y	L	G	Y	E	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																									S																		T	T		S								T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	A	F	D	G	R	D	K	N	Y	I	N	A	P	G	H	D	S	T	G	R	F	V	P	Y	C	N	K	I	N	G	P	V	I	I	E	P	L	V	H	Y	D	S	S	D	Y	Y	Q	L	P	K	T	T	G	K	D	T	L	T	E	P	Y	F	Y	E	G	I	F	M	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	S		G	G	G		T	T		T	T			T	T										T	T	S	S									T	T	T												S										T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	Y	D	S	P	I	F	K	N	G	E	F	A	G	I	A	G	V	D	V	P	L	E	Y	V	D	D	V	A	S	S	I	R	T	F	D	T	G	Y	A	F	M	V	S	N	T	G	I	F	L	S	H	P	T	Q	K	N	W	I	G	E	K	S	L	S	D	F	D	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T																				T	T			B	T	T	T	B							T	T		B	B	S			S	S		G	G	G	T	T	T		B	G	G	G	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Sequence	E	I	K	N	A	A	S	D	I	R	E	G	I	G	G	H	V	E	I	K	D	P	I	T	G	K	T	V	I	M	F	Y	E	P	V	K	T	G	D	F	S	F	V	L	V	V	P	K	E	E	M	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T										T	T	T	T											T	G	G	G