Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A715
DateThu Jan 5 11:04:29 GMT 2012
Unique Job IDadfe5d4692753347

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1o60a_
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
Confidence and coverage
Confidence:100.0% Coverage: 95%
269 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDK
Secondary structure 
SS confidence 
Disorder  ????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  ANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLAR
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  QTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVD
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  MLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA
Secondary structure 
SS confidence 
Disorder 
???
???????????
Disorder confidence 
 
   .........250.........260.........270.........280....
Sequence  HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1o60 chain A

3D model

Region: 2 - 282
Aligned: 269
Modelled: 281
Confidence: 100.0%
Identity: 78%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I DAHP synthetase

Phyre2

PDB 1d9e chain A

3D model

Region: 1 - 284
Aligned: 266
Modelled: 265
Confidence: 100.0%
Identity: 99%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I DAHP synthetase

Phyre2

PDB 3stg chain A

3D model

Region: 6 - 282
Aligned: 256
Modelled: 268
Confidence: 100.0%
Identity: 70%
PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of a58p, del(n59), and loop 7 truncated mutant of 3-2 deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from3 neisseria meningitidis

Phyre2

PDB 3sz8 chain D

3D model

Region: 8 - 281
Aligned: 256
Modelled: 259
Confidence: 100.0%
Identity: 66%
PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei

Phyre2

PDB 2a21 chain A domain 1

3D model

Region: 17 - 280
Aligned: 261
Modelled: 264
Confidence: 100.0%
Identity: 46%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I DAHP synthetase

Phyre2

PDB 1xuz chain A

3D model

Region: 3 - 282
Aligned: 257
Modelled: 267
Confidence: 100.0%
Identity: 13%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac;
PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol

Phyre2

PDB 1vli chain A

3D model

Region: 6 - 283
Aligned: 257
Modelled: 263
Confidence: 100.0%
Identity: 12%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse;
PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution

Phyre2

PDB 1vli chain A domain 2

3D model

Region: 5 - 283
Aligned: 257
Modelled: 267
Confidence: 100.0%
Identity: 12%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: NeuB-like

Phyre2

PDB 2zdr chain A domain 2

3D model

Region: 3 - 282
Aligned: 256
Modelled: 268
Confidence: 100.0%
Identity: 13%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: NeuB-like

Phyre2

PDB 3fs2 chain A

3D model

Region: 2 - 276
Aligned: 256
Modelled: 265
Confidence: 100.0%
Identity: 40%
PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate2 aldolase from bruciella melitensis at 1.85a resolution

Phyre2

PDB 1vr6 chain A domain 1

3D model

Region: 3 - 276
Aligned: 254
Modelled: 269
Confidence: 100.0%
Identity: 27%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I DAHP synthetase

Phyre2

PDB 1zco chain A

3D model

Region: 3 - 271
Aligned: 248
Modelled: 258
Confidence: 100.0%
Identity: 28%
PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphoheptonate aldolase;
PDBTitle: crystal structure of pyrococcus furiosus 3-deoxy-d-arabino-2 heptulosonate 7-phosphate synthase

Phyre2

PDB 1vs1 chain B

3D model

Region: 3 - 274
Aligned: 251
Modelled: 268
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: B: PDB Molecule:3-deoxy-7-phosphoheptulonate synthase;
PDBTitle: crystal structure of 3-deoxy-d-arabino-heptulosonate-7-2 phosphate synthase (dahp synthase) from aeropyrum pernix3 in complex with mn2+ and pep

Phyre2

PDB 3pg8 chain B

3D model

Region: 2 - 277
Aligned: 245
Modelled: 252
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima

Phyre2

PDB 3t4c chain D

3D model

Region: 6 - 282
Aligned: 251
Modelled: 262
Confidence: 100.0%
Identity: 42%
PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 1;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia ambifaria

Phyre2

PDB 3nvt chain A

3D model

Region: 3 - 273
Aligned: 251
Modelled: 267
Confidence: 100.0%
Identity: 26%
PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;
PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e

Phyre2

PDB 3g8r chain A

3D model

Region: 17 - 283
Aligned: 244
Modelled: 253
Confidence: 100.0%
Identity: 9%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e;
PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472

Phyre2

PDB 1ofa chain B

3D model

Region: 8 - 276
Aligned: 259
Modelled: 269
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: crystal structure of the tyrosine-regulated2 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase3 from saccharomyces cerevisiae in complex with4 phosphoenolpyruvate and cobalt(ii)

Phyre2

PDB 1of8 chain A

3D model

Region: 8 - 273
Aligned: 258
Modelled: 260
Confidence: 100.0%
Identity: 16%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I DAHP synthetase

Phyre2

PDB 1n8f chain A

3D model

Region: 8 - 275
Aligned: 255
Modelled: 262
Confidence: 100.0%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I DAHP synthetase

Phyre2
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d1o60a_
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d1d9ea_
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c3stgA_
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c3sz8D_
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d2a21a1
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c1xuzA_
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c1vliA_
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d1vlia2
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d2zdra2
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c3fs2A_
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d1vr6a1
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c1zcoA_
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c1vs1B_
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c3pg8B_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1o60a_
100.0 78 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
2d1d9ea_
100.0 99 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
3c3stgA_
100.0 70 PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of a58p, del(n59), and loop 7 truncated mutant of 3-2 deoxy-d-manno-octulosonate 8-phosphate synthase (kdo8ps) from3 neisseria meningitidis
4c3sz8D_
100.0 66 PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei
5d2a21a1
100.0 46 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
6c1xuzA_
100.0 13 PDB header:biosynthetic protein
Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac;
PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol
7c1vliA_
100.0 12 PDB header:biosynthetic protein
Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse;
PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution
8d1vlia2
100.0 12 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
9d2zdra2
100.0 13 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
10c3fs2A_
100.0 40 PDB header:transferase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate2 aldolase from bruciella melitensis at 1.85a resolution
11d1vr6a1
100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
12c1zcoA_
100.0 28 PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphoheptonate aldolase;
PDBTitle: crystal structure of pyrococcus furiosus 3-deoxy-d-arabino-2 heptulosonate 7-phosphate synthase
13c1vs1B_
100.0 24 PDB header:transferase
Chain: B: PDB Molecule:3-deoxy-7-phosphoheptulonate synthase;
PDBTitle: crystal structure of 3-deoxy-d-arabino-heptulosonate-7-2 phosphate synthase (dahp synthase) from aeropyrum pernix3 in complex with mn2+ and pep
14c3pg8B_
100.0 27 PDB header:transferase
Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: truncated form of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase2 from thermotoga maritima
15c3t4cD_
100.0 42 PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 1;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia ambifaria
16c3nvtA_
100.0 26 PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;
PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e
17c3g8rA_
100.0 9 PDB header:biosynthetic protein
Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e;
PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472
18c1ofaB_
100.0 17 PDB header:lyase
Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: crystal structure of the tyrosine-regulated2 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase3 from saccharomyces cerevisiae in complex with4 phosphoenolpyruvate and cobalt(ii)
19d1of8a_
100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
20d1n8fa_
100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
21c3tqkA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: structure of phospho-2-dehydro-3-deoxyheptonate aldolase from2 francisella tularensis schu s4
22c2y5sA_
not modelled 98.3 16 PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate.
23c1tx2A_
not modelled 98.1 14 PDB header:transferase
Chain: A: PDB Molecule:dhps, dihydropteroate synthase;
PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis
24d1tx2a_
not modelled 98.1 14 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
25d1rd5a_
not modelled 97.9 12 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
26c2yciX_
not modelled 97.9 11 PDB header:transferase
Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein
PDBTitle: methyltransferase native
27d1f6ya_
not modelled 97.9 13 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Methyltetrahydrofolate-utiluzing methyltransferases
28d1wbha1
not modelled 97.8 13 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
29d1ajza_
not modelled 97.6 15 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
30c2vp8A_
not modelled 97.6 18 PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase 2;
PDBTitle: structure of mycobacterium tuberculosis rv1207
31d1wa3a1
not modelled 97.5 15 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
32d1vhca_
not modelled 97.5 13 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
33c1piiA_
not modelled 97.4 10 PDB header:bifunctional(isomerase and synthase)
Chain: A: PDB Molecule:n-(5'phosphoribosyl)anthranilate isomerase;
PDBTitle: three-dimensional structure of the bifunctional enzyme2 phosphoribosylanthranilate isomerase:3 indoleglycerolphosphate synthase from escherichia coli4 refined at 2.0 angstroms resolution
34c3noyA_
not modelled 97.3 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
35d1ad1a_
not modelled 97.3 15 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
36c1zlpA_
not modelled 97.3 18 PDB header:lyase
Chain: A: PDB Molecule:petal death protein;
PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
37c3gndC_
not modelled 97.2 8 PDB header:lyase
Chain: C: PDB Molecule:aldolase lsrf;
PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate
38c2h9aB_
not modelled 97.2 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron-
PDBTitle: corrinoid iron-sulfur protein
39c3ih1A_
not modelled 97.2 21 PDB header:lyase
Chain: A: PDB Molecule:methylisocitrate lyase;
PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
40d1d3ga_
not modelled 97.1 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
41d1to3a_
not modelled 97.0 15 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
42d1a53a_
not modelled 97.0 8 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
43c2bmbA_
not modelled 97.0 13 PDB header:transferase
Chain: A: PDB Molecule:folic acid synthesis protein fol1;
PDBTitle: x-ray structure of the bifunctional 6-hydroxymethyl-7,8-2 dihydroxypterin pyrophosphokinase dihydropteroate synthase3 from saccharomyces cerevisiae
44d3bofa1
not modelled 97.0 15 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Methyltetrahydrofolate-utiluzing methyltransferases
45c3jrkG_
not modelled 97.0 13 PDB header:lyase
Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2;
PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes
46c3tr9A_
not modelled 96.9 16 PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii
47d1vc4a_
not modelled 96.9 14 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
48d1uuma_
not modelled 96.9 17 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
49c3eooL_
not modelled 96.9 15 PDB header:lyase
Chain: L: PDB Molecule:methylisocitrate lyase;
PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei
50d1eyea_
not modelled 96.9 13 Fold:TIM beta/alpha-barrel
Superfamily:Dihydropteroate synthetase-like
Family:Dihydropteroate synthetase
51d2fyma1
not modelled 96.7 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
52c3oqbF_
not modelled 96.7 13 PDB header:oxidoreductase
Chain: F: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110
53d1s2wa_
not modelled 96.6 15 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
54c3qjaA_
not modelled 96.6 8 PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form
55d1mxsa_
not modelled 96.6 12 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
56d1wv2a_
not modelled 96.5 16 Fold:TIM beta/alpha-barrel
Superfamily:ThiG-like
Family:ThiG-like
57c2y0fD_
not modelled 96.5 20 PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27
58c2dzaA_
not modelled 96.5 16 PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: crystal structure of dihydropteroate synthase from thermus2 thermophilus hb8 in complex with 4-aminobenzoate
59d1piia2
not modelled 96.5 7 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
60c2c3zA_
not modelled 96.4 10 PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus
61c3tqpA_
not modelled 96.4 17 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: structure of an enolase (eno) from coxiella burnetii
62c2ekcA_
not modelled 96.4 14 PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
63d1muma_
not modelled 96.4 15 Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
64c2vefB_
not modelled 96.4 17 PDB header:transferase
Chain: B: PDB Molecule:dihydropteroate synthase;
PDBTitle: dihydropteroate synthase from streptococcus pneumoniae
65c3v5nA_
not modelled 96.4 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of oxidoreductase from sinorhizobium meliloti
66c3eb2A_
not modelled 96.4 17 PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution
67d1qopa_
not modelled 96.3 15 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
68c2v82A_
not modelled 96.2 16 PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase;
PDBTitle: kdpgal complexed to kdpgal
69d2akza1
not modelled 96.2 13 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
70c3moiA_
not modelled 96.2 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50
71c3k13A_
not modelled 96.1 11 PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase;
PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron
72c2r8wB_
not modelled 96.1 12 PDB header:lyase
Chain: B: PDB Molecule:agr_c_1641p;
PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58
73d1ka9f_
not modelled 96.0 13 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
74d2b7oa1
not modelled 96.0 11 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class-II DAHP synthetase
75d1p0ka_
not modelled 95.9 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
76c2ftpA_
not modelled 95.9 15 PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa
77c1l8pC_
not modelled 95.9 12 PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: mg-phosphonoacetohydroxamate complex of s39a yeast enolase 1
78c3ezyB_
not modelled 95.9 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:dehydrogenase;
PDBTitle: crystal structure of probable dehydrogenase tm_0414 from2 thermotoga maritima
79c3db2C_
not modelled 95.8 19 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase;
PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution
80c3rbvA_
not modelled 95.7 13 PDB header:sugar binding protein
Chain: A: PDB Molecule:sugar 3-ketoreductase;
PDBTitle: crystal structure of kijd10, a 3-ketoreductase from actinomadura2 kijaniata incomplex with nadp
81d1pdza1
not modelled 95.6 11 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
82d1i4na_
not modelled 95.6 14 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
83c3qn3B_
not modelled 95.6 15 PDB header:lyase
Chain: B: PDB Molecule:enolase;
PDBTitle: phosphopyruvate hydratase from campylobacter jejuni.
84c2akmA_
not modelled 95.6 16 PDB header:lyase
Chain: A: PDB Molecule:gamma enolase;
PDBTitle: fluoride inhibition of enolase: crystal structure of the2 inhibitory complex
85c2v9dB_
not modelled 95.6 18 PDB header:lyase
Chain: B: PDB Molecule:yage;
PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12
86d2ptza1
not modelled 95.5 12 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
87c3qc3B_
not modelled 95.4 10 PDB header:isomerase
Chain: B: PDB Molecule:d-ribulose-5-phosphate-3-epimerase;
PDBTitle: crystal structure of a d-ribulose-5-phosphate-3-epimerase (np_954699)2 from homo sapiens at 2.20 a resolution
88c2nvwB_
not modelled 95.4 14 PDB header:transcription
Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein
PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis
89c3ceaA_
not modelled 95.4 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:myo-inositol 2-dehydrogenase;
PDBTitle: crystal structure of myo-inositol 2-dehydrogenase (np_786804.1) from2 lactobacillus plantarum at 2.40 a resolution
90c3euwB_
not modelled 95.4 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:myo-inositol dehydrogenase;
PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032
91c2rfgB_
not modelled 95.3 15 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution
92c3q2kB_
not modelled 95.3 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca
93c3fluD_
not modelled 95.3 14 PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis
94c3uj2C_
not modelled 95.3 16 PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: crystal structure of an enolase from anaerostipes caccae (efi target2 efi-502054) with bound mg and sulfate
95d1xkya1
not modelled 95.3 19 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
96c3q58A_
not modelled 95.2 13 PDB header:isomerase
Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase;
PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica
97d1j5ta_
not modelled 95.2 14 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
98c2q4eB_
not modelled 95.2 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:probable oxidoreductase at4g09670;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670
99d1f76a_
not modelled 95.2 13 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
100d1thfd_
not modelled 95.2 13 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Histidine biosynthesis enzymes
101c1xeaD_
not modelled 95.1 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae
102c3lyeA_
not modelled 95.1 14 PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase
103c3noeA_
not modelled 95.1 13 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa
104d1o5ka_
not modelled 95.1 19 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
105c3l2iB_
not modelled 95.0 11 PDB header:lyase
Chain: B: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: 1.85 angstrom crystal structure of the 3-dehydroquinate dehydratase2 (arod) from salmonella typhimurium lt2.
106d1w6ta1
not modelled 95.0 15 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
107c3qtpB_
not modelled 95.0 10 PDB header:lyase
Chain: B: PDB Molecule:enolase 1;
PDBTitle: crystal structure analysis of entamoeba histolytica enolase
108c3pueA_
not modelled 95.0 12 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution
109c3bi8A_
not modelled 95.0 13 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum
110c1h6dL_
not modelled 95.0 15 PDB header:protein translocation
Chain: L: PDB Molecule:precursor form of glucose-fructose
PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol
111d1h1ya_
not modelled 94.9 14 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase
112c1ofgF_
not modelled 94.9 15 PDB header:oxidoreductase
Chain: F: PDB Molecule:glucose-fructose oxidoreductase;
PDBTitle: glucose-fructose oxidoreductase
113c2o48X_
not modelled 94.9 13 PDB header:oxidoreductase
Chain: X: PDB Molecule:dimeric dihydrodiol dehydrogenase;
PDBTitle: crystal structure of mammalian dimeric dihydrodiol dehydrogenase
114c1zfjA_
not modelled 94.8 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
115d1xi3a_
not modelled 94.8 21 Fold:TIM beta/alpha-barrel
Superfamily:Thiamin phosphate synthase
Family:Thiamin phosphate synthase
116c1zh8B_
not modelled 94.8 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of oxidoreductase (tm0312) from thermotoga maritima2 at 2.50 a resolution
117c2fptA_
not modelled 94.8 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial;
PDBTitle: dual binding mode of a novel series of dhodh inhibitors
118c3otrC_
not modelled 94.8 11 PDB header:lyase
Chain: C: PDB Molecule:enolase;
PDBTitle: 2.75 angstrom crystal structure of enolase 1 from toxoplasma gondii
119c3igsB_
not modelled 94.8 13 PDB header:isomerase
Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2;
PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase
120c2qjhH_
not modelled 94.8 16 PDB header:lyase
Chain: H: PDB Molecule:putative aldolase mj0400;
PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0