PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3t4cD_

Fold library id	PDB Header	Molecule	Title
c3t4cD_	PDB header: transferase	Chain: D: PDB Molecule: 2-dehydro-3-deoxyphosphooctonate aldolase 1;	PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia ambifaria

Links to external resources
Added to library: Sat Aug 20 09:50:19 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S M K L Y D F E V G L D Q P F F L I A G T C V V E S E Q M T I D T A G R L K E I C A K L N V P F I Y K S S M D E G L R I L G E V K R Q L G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T S
S S
T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P V L T D V H S I D E I E Q V A S V V D V L Q T P A F L C R Q T D F I H A C A R S G K P V N I K K G Q F L A P H D M K N V I D K A R E A A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S
G G G T T
T T S S
T T S
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E A G L S E D R F M A C E R G V S F G Y N N L V S D M R S L A I M R E T S A P V V F D A T H S V Q L P G Q R E F V P V L A R A A V A T G V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S S
G G G G S S
T
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . .

Sequence G L F M E T H P N P A E A K S D G P N A V P L N R M G A L L E T L V T L D Q A V K R H P F L E N D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T
T T S
S
G G G S S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	M	K	L	Y	D	F	E	V	G	L	D	Q	P	F	F	L	I	A	G	T	C	V	V	E	S	E	Q	M	T	I	D	T	A	G	R	L	K	E	I	C	A	K	L	N	V	P	F	I	Y	K	S	S	M	D	E	G	L	R	I	L	G	E	V	K	R	Q	L	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T				S	T	T	S									S	S																					T	T																								T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	V	L	T	D	V	H	S	I	D	E	I	E	Q	V	A	S	V	V	D	V	L	Q	T	P	A	F	L	C	R	Q	T	D	F	I	H	A	C	A	R	S	G	K	P	V	N	I	K	K	G	Q	F	L	A	P	H	D	M	K	N	V	I	D	K	A	R	E	A	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S									T	T		S						G	G	G	T	T										T	T	S	S								T	T	S		G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	A	G	L	S	E	D	R	F	M	A	C	E	R	G	V	S	F	G	Y	N	N	L	V	S	D	M	R	S	L	A	I	M	R	E	T	S	A	P	V	V	F	D	A	T	H	S	V	Q	L	P	G	Q	R	E	F	V	P	V	L	A	R	A	A	V	A	T	G	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			S													S	S	S												G	G	G	G	S	S										T						T	T															S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Sequence	G	L	F	M	E	T	H	P	N	P	A	E	A	K	S	D	G	P	N	A	V	P	L	N	R	M	G	A	L	L	E	T	L	V	T	L	D	Q	A	V	K	R	H	P	F	L	E	N	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		T	T	T			T	T	S		S				G	G	G																	S	S			G	G	G