Email l.a.kelley@imperial.ac.uk Description P18956 Date Thu Jan 5 11:37:12 GMT 2012 Unique Job ID acd5409637bd2c84

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2nlza1 100.0 31 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Gamma-glutamyltranspeptidase-like 2 c2e0wA_ 100.0 100 PDB header:transferase Chain: A: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: t391a precursor mutant protein of gamma-glutamyltranspeptidase from2 escherichia coli 3 d2i3oa1 100.0 24 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Gamma-glutamyltranspeptidase-like 4 c2z8jA_ 100.0 100 PDB header:transferase Chain: A: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of escherichia coli gamma-2 glutamyltranspeptidase in complex with azaserine prepared3 in the dark 5 c2v36A_ 100.0 40 PDB header:transferase Chain: A: PDB Molecule:gamma-glutamyltranspeptidase large chain; PDBTitle: crystal structure of gamma-glutamyl transferase from2 bacillus subtilis 6 c2qm6C_ 100.0 49 PDB header:transferase Chain: C: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase2 in complex with glutamate 7 c3g9kD_ 100.0 38 PDB header:hydrolase Chain: D: PDB Molecule:capsule biosynthesis protein capd; PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd 8 c2e0yB_ 100.0 96 PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of the samarium derivative of mature gamma-2 glutamyltranspeptidase from escherichia coli 9 c2nqoB_ 100.0 58 PDB header:transferase Chain: B: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase 10 c2v36D_ 100.0 42 PDB header:transferase Chain: D: PDB Molecule:gamma-glutamyltranspeptidase small chain; PDBTitle: crystal structure of gamma-glutamyl transferase from2 bacillus subtilis 11 c3ga9S_ 100.0 33 PDB header:hydrolase Chain: S: PDB Molecule:capsule biosynthesis protein capd; PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd,2 crystal form ii 12 c1apyA_ 94.9 25 PDB header:hydrolase Chain: A: PDB Molecule:aspartylglucosaminidase; PDBTitle: human aspartylglucosaminidase 13 c1t3mA_ 94.9 18 PDB header:hydrolase Chain: A: PDB Molecule:putative l-asparaginase; PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli 14 c2gezE_ 94.4 23 PDB header:hydrolase Chain: E: PDB Molecule:l-asparaginase alpha subunit; PDBTitle: crystal structure of potassium-independent plant asparaginase 15 c2zakB_ 93.4 18 PDB header:hydrolase Chain: B: PDB Molecule:l-asparaginase precursor; PDBTitle: orthorhombic crystal structure of precursor e. coli isoaspartyl2 peptidase/l-asparaginase (ecaiii) with active-site t179a mutation 16 c1p4vA_ 92.9 18 PDB header:hydrolase Chain: A: PDB Molecule:n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase PDBTitle: crystal structure of the glycosylasparaginase precursor2 d151n mutant with glycine 17 c2gacA_ 92.4 26 PDB header:hydrolase Chain: A: PDB Molecule:glycosylasparaginase; PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum 18 c2a8lB_ 92.2 26 PDB header:hydrolase Chain: B: PDB Molecule:threonine aspartase 1; PDBTitle: crystal structure of human taspase1 (t234a mutant) 19 c1apzB_ 85.9 19 PDB header:complex (hydrolase/peptide) Chain: B: PDB Molecule:aspartylglucosaminidase; PDBTitle: human aspartylglucosaminidase complex with reaction product 20 c3cuqA_ 85.6 45 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 21 c2zmeA_ not modelled 85.4 45 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 22 c1u5tA_ not modelled 84.8 28 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 23 d1u5ta1 not modelled 78.9 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 24 c1w7pD_ not modelled 72.5 33 PDB header:protein transport Chain: D: PDB Molecule:vps36p, ylr417w; PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36) 25 c1u5tB_ not modelled 69.7 37 PDB header:transport protein Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p; PDBTitle: structure of the escrt-ii endosomal trafficking complex 26 c2zmeB_ not modelled 69.2 19 PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 27 d1jq5a_ not modelled 64.7 23 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 28 c1t3mD_ not modelled 62.1 27 PDB header:hydrolase Chain: D: PDB Molecule:putative l-asparaginase; PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli 29 c1jn9B_ not modelled 62.1 27 PDB header:hydrolase Chain: B: PDB Molecule:putative l-asparaginase; PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene 30 c1t3mB_ not modelled 62.1 27 PDB header:hydrolase Chain: B: PDB Molecule:putative l-asparaginase; PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli 31 c2zalD_ not modelled 58.9 27 PDB header:hydrolase Chain: D: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate 32 c2gacD_ not modelled 55.0 19 PDB header:hydrolase Chain: D: PDB Molecule:glycosylasparaginase; PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum 33 c2gezF_ not modelled 53.6 21 PDB header:hydrolase Chain: F: PDB Molecule:l-asparaginase beta subunit; PDBTitle: crystal structure of potassium-independent plant asparaginase 34 c1k2xB_ not modelled 51.1 27 PDB header:hydrolase Chain: B: PDB Molecule:putative l-asparaginase; PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene 35 c1k2xD_ not modelled 51.1 27 PDB header:hydrolase Chain: D: PDB Molecule:putative l-asparaginase; PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene 36 c1jn9D_ not modelled 51.1 27 PDB header:hydrolase Chain: D: PDB Molecule:putative l-asparaginase; PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene 37 c2zalB_ not modelled 48.3 27 PDB header:hydrolase Chain: B: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate 38 c3rf7A_ not modelled 31.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution 39 c2wl8D_ not modelled 31.2 19 PDB header:protein transport Chain: D: PDB Molecule:peroxisomal biogenesis factor 19; PDBTitle: x-ray crystal structure of pex19p 40 d2fi0a1 not modelled 28.9 19 Fold:SP0561-like Superfamily:SP0561-like Family:SP0561-like 41 d1u2ka_ not modelled 26.3 11 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 42 c3bt3B_ not modelled 25.4 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:glyoxalase-related enzyme, arac type; PDBTitle: crystal structure of a glyoxalase-related enzyme from clostridium2 phytofermentans 43 c3h7hA_ not modelled 24.1 11 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 44 c3gxqB_ not modelled 23.9 50 PDB header:dna binding protein/dna Chain: B: PDB Molecule:putative regulator of transfer genes arta; PDBTitle: structure of arta and dna complex 45 d1o2da_ not modelled 23.7 27 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 46 d2ccaa1 not modelled 23.3 15 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 47 c1udsA_ not modelled 21.1 17 PDB header:transferase Chain: A: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of the trna processing enzyme rnase ph r126a mutant2 from aquifex aeolicus 48 d1oj7a_ not modelled 20.8 20 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 49 c2kmvA_ not modelled 20.5 13 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the nucleotide binding domain of the2 human menkes protein in the atp-free form 50 c3hkmB_ not modelled 19.9 26 PDB header:hydrolase Chain: B: PDB Molecule:os03g0854200 protein; PDBTitle: crystal structure of rice(oryza sativa) rrp46 51 d1u5tb1 not modelled 19.4 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 52 c2qntA_ not modelled 19.0 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1872; PDBTitle: crystal structure of protein of unknown function from agrobacterium2 tumefaciens str. c58 53 d2nn6f1 not modelled 17.6 33 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 54 d1r6la1 not modelled 17.2 11 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 55 c2nn6D_ not modelled 16.9 21 PDB header:hydrolase/transferase Chain: D: PDB Molecule:exosome complex exonuclease rrp46; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 56 d2nn6b1 not modelled 16.6 22 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 57 c3b4tC_ not modelled 16.4 32 PDB header:transferase Chain: C: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of mycobacterium tuberculosis rnase ph, the2 mycobacterium tuberculosis structural genomics consortium target3 rv1340 58 d1udsa1 not modelled 16.1 17 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 59 d2nn6a1 not modelled 15.9 33 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 60 d1a0da_ not modelled 15.7 24 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 61 d2nn6e1 not modelled 15.6 39 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 62 d1vlja_ not modelled 15.6 25 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 63 d2je6b1 not modelled 15.6 11 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 64 c1u2jC_ not modelled 15.6 9 PDB header:oxidoreductase Chain: C: PDB Molecule:peroxidase/catalase hpi; PDBTitle: crystal structure of the c-terminal domain from the2 catalase-peroxidase katg of escherichia coli (p21 21 21) 65 c2rk9B_ not modelled 14.8 14 PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase; PDBTitle: the crystal structure of a glyoxalase/bleomycin resistance2 protein/dioxygenase superfamily member from vibrio splendidus 12b01 66 d2ba0g1 not modelled 13.9 33 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 67 c3itwA_ not modelled 13.8 26 PDB header:peptide binding protein Chain: A: PDB Molecule:protein tiox; PDBTitle: crystal structure of tiox from micromonospora sp. ml1 68 d2nn6d1 not modelled 13.5 6 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 69 c2wnrB_ not modelled 13.3 32 PDB header:hydrolase Chain: B: PDB Molecule:probable exosome complex exonuclease 1; PDBTitle: the structure of methanothermobacter thermautotrophicus2 exosome core assembly 70 d1kq3a_ not modelled 12.4 20 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 71 c2nn6F_ not modelled 12.1 33 PDB header:hydrolase/transferase Chain: F: PDB Molecule:exosome component 6; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 72 d1ny9a_ not modelled 12.1 11 Fold:Antibiotic binding domain of TipA-like multidrug resistance regulators Superfamily:Antibiotic binding domain of TipA-like multidrug resistance regulators Family:Antibiotic binding domain of TipA-like multidrug resistance regulators 73 c1ny9A_ not modelled 12.1 11 PDB header:transcription Chain: A: PDB Molecule:transcriptional activator tipa-s; PDBTitle: antibiotic binding domain of a tipa-class multidrug2 resistance transcriptional regulator 74 c2e5yA_ not modelled 11.9 17 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase epsilon chain; PDBTitle: epsilon subunit and atp complex of f1f0-atp synthase from2 the thermophilic bacillus ps3 75 c2wp8B_ not modelled 11.9 11 PDB header:hydrolase Chain: B: PDB Molecule:exosome complex component ski6; PDBTitle: yeast rrp44 nuclease 76 d1mwva1 not modelled 11.6 9 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 77 c2qz5A_ not modelled 11.2 19 PDB header:signaling protein, lipid binding protein Chain: A: PDB Molecule:axin interactor, dorsalization associated PDBTitle: crystal structure of the c-terminal domain of aida 78 c3epzA_ not modelled 11.0 26 PDB header:transferase Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1; PDBTitle: structure of the replication foci-targeting sequence of human dna2 cytosine methyltransferase dnmt1 79 d2qalk1 not modelled 11.0 26 Fold:Ribonuclease H-like motif Superfamily:Translational machinery components Family:Ribosomal protein L18 and S11 80 c2br2G_ not modelled 10.9 39 PDB header:hydrolase Chain: G: PDB Molecule:exosome complex exonuclease 2; PDBTitle: rnase ph core of the archaeal exosome 81 d1oysa1 not modelled 10.9 11 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 82 c2zkqk_ not modelled 10.9 22 PDB header:ribosomal protein/rna Chain: K: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 83 c3dd6A_ not modelled 10.6 17 PDB header:transferase Chain: A: PDB Molecule:ribonuclease ph; PDBTitle: crystal structure of rph, an exoribonuclease from bacillus2 anthracis at 1.7 a resolution 84 d2je6a1 not modelled 10.5 39 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Ribonuclease PH domain 1-like 85 c2koyA_ not modelled 10.5 12 PDB header:metal transport Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: structure of the e1064a mutant of the n-domain of wilson disease2 associated protein 86 d1huwa_ not modelled 10.4 15 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Long-chain cytokines 87 c3bvkC_ not modelled 10.3 13 PDB header:oxidoreductase Chain: C: PDB Molecule:ferritin; PDBTitle: structural basis for the iron uptake mechanism of helicobacter pylori2 ferritin 88 d1ub2a1 not modelled 10.0 12 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 89 c2arfA_ not modelled 9.9 14 PDB header:hydrolase Chain: A: PDB Molecule:wilson disease atpase; PDBTitle: solution structure of the wilson atpase n-domain in the2 presence of atp 90 d2i09a2 not modelled 9.9 20 Fold:DeoB insert domain-like Superfamily:DeoB insert domain-like Family:DeoB insert domain-like 91 d1v74a_ not modelled 9.5 12 Fold:Colicin D/E5 nuclease domain Superfamily:Colicin D/E5 nuclease domain Family:Colicin D nuclease domain 92 c3bfjK_ not modelled 9.4 18 PDB header:oxidoreductase Chain: K: PDB Molecule:1,3-propanediol oxidoreductase; PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase 93 d3bzka1 not modelled 9.4 29 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like 94 d1itka1 not modelled 9.4 12 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 95 c2rq7A_ not modelled 9.3 16 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase epsilon chain; PDBTitle: solution structure of the epsilon subunit chimera combining2 the n-terminal beta-sandwich domain from t. elongatus bp-13 f1 and the c-terminal alpha-helical domain from spinach4 chloroplast f1 96 c2rbbB_ not modelled 9.2 13 PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase; PDBTitle: crystal structure of a glyoxalase/bleomycin resistance2 protein/dioxygenase family enzyme from burkholderia phytofirmans psjn 97 c2oudA_ not modelled 9.1 24 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of the catalytic domain of human mkp5 98 c2czhB_ not modelled 9.0 33 PDB header:hydrolase Chain: B: PDB Molecule:inositol monophosphatase 2; PDBTitle: crystal structure of human myo-inositol monophosphatase 22 (impa2) with phosphate ion (orthorhombic form) 99 d1ub2a2 not modelled 8.9 15 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG