Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	K	S	L	F	R	A	L	V	A	L	S	F	L	A	P	L	W	L	N	A	A	P	R	V	I	T	L	S	P	A	N	T	E	L	A	F	A	A	G	I	T	P	V	G	V	S	S	Y	S	D	Y	P	P	Q	A	Q	K	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	Q	V	S	T	W	Q	G	M	N	L	E	R	I	V	A	L	K	P	D	L	V	I	A	W	R	G	G	N	A	E	R	Q	V	D	Q	L	A	S	L	G	I	K	V	M	W	V	D	A	T	S	I	E	Q	I	A	N	A	L	R
Secondary structure
SS confidence
Disorder				?	?																								?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	L	A	P	W	S	P	Q	P	D	K	A	E	Q	A	A	Q	S	L	L	D	Q	Y	A	Q	L	K	A	Q	Y	A	D	K	P	K	K	R	V	F	L	Q	F	G	I	N	P	P	F	T	S	G	K	E	S	I	Q	N	Q	V	L
Secondary structure
SS confidence
Disorder																															?	?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	V	C	G	G	E	N	I	F	K	D	S	R	V	P	W	P	Q	V	S	R	E	Q	V	L	A	R	S	P	Q	A	I	V	I	T	G	G	P	D	Q	I	P	K	I	K	Q	Y	W	G	E	Q	L	K	I	P	V	I	P	L	T
Secondary structure
SS confidence
Disorder														?	?																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Sequence		S	D	W	F	E	R	A	S	P	R	I	I	L	A	A	Q	Q	L	C	N	A	L	S	Q	V	D
Secondary structure
SS confidence
Disorder																									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1n2z chain A Region: 22 - 266 Aligned: 245 Modelled: 245 Confidence: 100.0% Identity: 100% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TroA-like Phyre2 PDB 3md9 chain A Region: 23 - 265 Aligned: 241 Modelled: 243 Confidence: 100.0% Identity: 22% PDB header:transport protein Chain: A: PDB Molecule:hemin-binding periplasmic protein hmut; PDBTitle: structure of apo form of a periplasmic heme binding protein Phyre2 PDB 2r7a chain C Region: 23 - 263 Aligned: 239 Modelled: 241 Confidence: 100.0% Identity: 26% PDB header:transport protein Chain: C: PDB Molecule:bacterial heme binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae Phyre2 PDB 2r79 chain A Region: 23 - 263 Aligned: 239 Modelled: 241 Confidence: 100.0% Identity: 21% PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa Phyre2 PDB 2q8p chain A Region: 25 - 264 Aligned: 239 Modelled: 239 Confidence: 100.0% Identity: 18% PDB header:metal transport Chain: A: PDB Molecule:iron-regulated surface determinant e; PDBTitle: crystal structure of selenomethionine labelled s. aureus isde2 complexed with heme Phyre2 PDB 3psh chain A Region: 21 - 263 Aligned: 242 Modelled: 243 Confidence: 100.0% Identity: 20% PDB header:metal transport Chain: A: PDB Molecule:protein hi_1472; PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate) Phyre2 PDB 2chu chain A domain 1 Region: 21 - 264 Aligned: 239 Modelled: 242 Confidence: 100.0% Identity: 18% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 3eiw chain A Region: 21 - 265 Aligned: 242 Modelled: 245 Confidence: 100.0% Identity: 19% PDB header:transport protein Chain: A: PDB Molecule:htsa protein; PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa Phyre2 PDB 3gfv chain A Region: 21 - 266 Aligned: 244 Modelled: 244 Confidence: 100.0% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:uncharacterized abc transporter solute-binding PDBTitle: crystal structure of petrobactin-binding protein yclq from2 bacillu subtilis Phyre2 PDB 1esz chain A Region: 22 - 262 Aligned: 241 Modelled: 241 Confidence: 100.0% Identity: 18% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Periplasmic ferric siderophore binding protein FhuD Phyre2 PDB 3be5 chain D Region: 21 - 263 Aligned: 238 Modelled: 241 Confidence: 100.0% Identity: 18% PDB header:metal transport Chain: D: PDB Molecule:putative iron compound-binding protein of abc transporter PDBTitle: crystal structure of fite (crystal form 1), a group iii periplasmic2 siderophore binding protein Phyre2 PDB 3g9q chain A Region: 21 - 266 Aligned: 238 Modelled: 246 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:ferrichrome-binding protein; PDBTitle: crystal structure of the fhud fold-family bsu3320, a periplasmic2 binding protein component of a fep/fec-like ferrichrome abc3 transporter from bacillus subtilis. northeast structural genomics4 consortium target sr577a Phyre2 PDB 3mwg chain A Region: 24 - 266 Aligned: 239 Modelled: 243 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein PDBTitle: crystal structure of staphylococcus aureus sira Phyre2 PDB 2phz chain A Region: 23 - 262 Aligned: 237 Modelled: 240 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:iron-uptake system-binding protein; PDBTitle: crystal structure of iron-uptake system-binding protein2 feua from bacillus subtilis. northeast structural genomics3 target sr580. Phyre2 PDB 2phz chain A domain 1 Region: 23 - 262 Aligned: 237 Modelled: 240 Confidence: 100.0% Identity: 17% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 2etv chain A domain 1 Region: 21 - 263 Aligned: 234 Modelled: 241 Confidence: 100.0% Identity: 16% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: TM0189-like Phyre2 PDB 2x4l chain A Region: 21 - 264 Aligned: 242 Modelled: 244 Confidence: 100.0% Identity: 18% PDB header:transport Chain: A: PDB Molecule:ferric-siderophore receptor protein; PDBTitle: crystal structure of dese, a ferric-siderophore receptor2 protein from streptomyces coelicolor Phyre2 PDB 1qh8 chain A Region: 33 - 264 Aligned: 210 Modelled: 216 Confidence: 96.4% Identity: 16% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Nitrogenase iron-molybdenum protein Phyre2 PDB 3aer chain C Region: 33 - 214 Aligned: 160 Modelled: 169 Confidence: 96.3% Identity: 11% PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark Phyre2 PDB 3pdi chain G Region: 67 - 213 Aligned: 141 Modelled: 147 Confidence: 96.1% Identity: 11% PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen Phyre2 1 d1n2za_ 2 c3md9A_ 3 c2r7aC_ 4 c2r79A_ 5 c2q8pA_ 6 c3pshA_ 7 d2chua1 8 c3eiwA_ 9 c3gfvA_ 10 d1esza_ 11 c3be5D_ 12 c3g9qA_ 13 c3mwgA_ 14 c2phzA_ 15 d2phza1 16 d2etva1 17 c2x4lA_ 18 d1qh8a_ 19 c3aerC_ 20 c3pdiG_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1n2za_ 100.0 100 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 2 c3md9A_ 100.0 22 PDB header:transport protein Chain: A: PDB Molecule:hemin-binding periplasmic protein hmut; PDBTitle: structure of apo form of a periplasmic heme binding protein 3 c2r7aC_ 100.0 26 PDB header:transport protein Chain: C: PDB Molecule:bacterial heme binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae 4 c2r79A_ 100.0 21 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa 5 c2q8pA_ 100.0 18 PDB header:metal transport Chain: A: PDB Molecule:iron-regulated surface determinant e; PDBTitle: crystal structure of selenomethionine labelled s. aureus isde2 complexed with heme 6 c3pshA_ 100.0 20 PDB header:metal transport Chain: A: PDB Molecule:protein hi_1472; PDBTitle: classification of a haemophilus influenzae abc transporter hi1470/712 through its cognate molybdate periplasmic binding protein mola (mola3 bound to molybdate) 7 d2chua1 100.0 18 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 8 c3eiwA_ 100.0 19 PDB header:transport protein Chain: A: PDB Molecule:htsa protein; PDBTitle: crystal structure of staphylococcus aureus lipoprotein, htsa 9 c3gfvA_ 100.0 13 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized abc transporter solute-binding PDBTitle: crystal structure of petrobactin-binding protein yclq from2 bacillu subtilis 10 d1esza_ 100.0 18 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Periplasmic ferric siderophore binding protein FhuD 11 c3be5D_ 100.0 18 PDB header:metal transport Chain: D: PDB Molecule:putative iron compound-binding protein of abc transporter PDBTitle: crystal structure of fite (crystal form 1), a group iii periplasmic2 siderophore binding protein 12 c3g9qA_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:ferrichrome-binding protein; PDBTitle: crystal structure of the fhud fold-family bsu3320, a periplasmic2 binding protein component of a fep/fec-like ferrichrome abc3 transporter from bacillus subtilis. northeast structural genomics4 consortium target sr577a 13 c3mwgA_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein PDBTitle: crystal structure of staphylococcus aureus sira 14 c2phzA_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:iron-uptake system-binding protein; PDBTitle: crystal structure of iron-uptake system-binding protein2 feua from bacillus subtilis. northeast structural genomics3 target sr580. 15 d2phza1 100.0 17 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 16 d2etva1 100.0 16 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TM0189-like 17 c2x4lA_ 100.0 18 PDB header:transport Chain: A: PDB Molecule:ferric-siderophore receptor protein; PDBTitle: crystal structure of dese, a ferric-siderophore receptor2 protein from streptomyces coelicolor 18 d1qh8a_ 96.4 16 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 19 c3aerC_ 96.3 11 PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 20 c3pdiG_ 96.1 11 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 21 c2xdqA_ not modelled 96.1 11 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 22 d1m1na_ not modelled 95.8 19 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 23 d1mioa_ not modelled 95.0 16 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 24 c3pdiB_ not modelled 93.9 13 PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen 25 d1qh8b_ not modelled 93.4 16 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 26 d1miob_ not modelled 90.2 12 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 27 d7reqa2 not modelled 81.3 10 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 28 d1m1nb_ not modelled 77.3 15 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 29 d1pq4a_ not modelled 74.1 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 30 c1e1cA_ not modelled 71.3 14 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant 31 c1toaA_ not modelled 70.5 11 PDB header:binding protein Chain: A: PDB Molecule:protein (periplasmic binding protein troa); PDBTitle: periplasmic zinc binding protein troa from treponema pallidum 32 d1toaa_ not modelled 70.5 11 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 33 c2xdqB_ not modelled 68.4 13 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 34 d1p3da1 not modelled 66.5 10 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 35 c3mfqB_ not modelled 64.6 16 PDB header:metal binding protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: a glance into the metal binding specificity of troa: where elaborate2 behaviors occur in the active center 36 c2r8rB_ not modelled 64.5 23 PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: crystal structure of the n-terminal region (19..243) of sensor protein2 kdpd from pseudomonas syringae pv. tomato str. dc3000 37 d1ovma1 not modelled 62.6 8 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 38 d1q3qa2 not modelled 58.9 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 39 d1psza_ not modelled 58.0 9 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 40 c2zkqb_ not modelled 57.8 7 PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 41 c3bchA_ not modelled 57.6 7 PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor 42 c1s1hB_ not modelled 57.5 20 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 43 c2xznB_ not modelled 57.5 13 PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 44 c2gm2A_ not modelled 57.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35 45 d1assa_ not modelled 57.2 20 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 46 d1kjqa2 not modelled 57.1 26 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 47 d1gmla_ not modelled 56.0 21 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 48 d1x74a1 not modelled 55.1 20 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 49 c3izbA_ not modelled 52.8 20 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein rps0 (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 50 d1j6ua1 not modelled 52.5 13 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 51 c3bbnB_ not modelled 50.4 24 PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 52 d2ioja1 not modelled 50.0 15 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain 53 d1vi6a_ not modelled 49.9 20 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 54 c3kc2A_ not modelled 49.4 18 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae 55 c3iz6A_ not modelled 48.3 17 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 56 d2gy9b1 not modelled 47.2 21 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 57 c2dc1A_ not modelled 46.7 8 PDB header:oxidoreductase Chain: A: PDB Molecule:l-aspartate dehydrogenase; PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus 58 d1pjca2 not modelled 45.4 17 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:L-alanine dehydrogenase-like 59 d2q4qa1 not modelled 45.3 21 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 60 d2uubb1 not modelled 45.1 21 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 61 d1a9xa4 not modelled 43.5 16 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 62 c3hjtB_ not modelled 42.9 15 PDB header:cell adhesion, transport protein Chain: B: PDB Molecule:lmb; PDBTitle: structure of laminin binding protein (lmb) of streptococcus2 agalactiae a bifunctional protein with adhesin and metal3 transporting activity 63 d1a6db2 not modelled 41.3 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 64 c3sg0A_ not modelled 38.7 13 PDB header:signaling protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2 65 d1f06a1 not modelled 38.3 8 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 66 d1ig3a2 not modelled 38.3 10 Fold:Thiamin pyrophosphokinase, catalytic domain Superfamily:Thiamin pyrophosphokinase, catalytic domain Family:Thiamin pyrophosphokinase, catalytic domain 67 c1kjjA_ not modelled 37.6 22 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase 2; PDBTitle: crystal structure of glycniamide ribonucleotide2 transformylase in complex with mg-atp-gamma-s 68 d2jfga1 not modelled 37.2 20 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 69 d7reqb2 not modelled 35.6 13 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 70 c3cu5B_ not modelled 35.5 11 PDB header:transcription regulator Chain: B: PDB Molecule:two component transcriptional regulator, arac family; PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg 71 d1ig0a2 not modelled 33.3 8 Fold:Thiamin pyrophosphokinase, catalytic domain Superfamily:Thiamin pyrophosphokinase, catalytic domain Family:Thiamin pyrophosphokinase, catalytic domain 72 c3o3nB_ not modelled 32.1 14 PDB header:lyase Chain: B: PDB Molecule:beta-subunit 2-hydroxyacyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 73 c2f17A_ not modelled 31.6 10 PDB header:transferase Chain: A: PDB Molecule:thiamin pyrophosphokinase 1; PDBTitle: mouse thiamin pyrophosphokinase in a ternary complex with2 pyrithiamin pyrophosphate and amp at 2.5 angstrom 74 c2ov3A_ not modelled 31.5 12 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein component of an abc PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc2 bound 75 c2ayxA_ not modelled 31.5 15 PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain 76 c1ig0A_ not modelled 30.7 8 PDB header:transferase Chain: A: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of yeast thiamin pyrophosphokinase 77 d1li4a2 not modelled 29.3 16 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:S-adenosylhomocystein hydrolase 78 c2hh9A_ not modelled 29.1 11 PDB header:transferase Chain: A: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: thiamin pyrophosphokinase from candida albicans 79 d1a9xb2 not modelled 28.6 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 80 c3dapB_ not modelled 28.5 8 PDB header:oxidoreductase Chain: B: PDB Molecule:diaminopimelic acid dehydrogenase; PDBTitle: c. glutamicum dap dehydrogenase in complex with nadp+ and2 the inhibitor 5s-isoxazoline 81 c3e18A_ not modelled 27.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of nad-binding protein from listeria innocua 82 c2yxbA_ not modelled 27.2 13 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 83 c2dwcB_ not modelled 27.0 19 PDB header:transferase Chain: B: PDB Molecule:433aa long hypothetical phosphoribosylglycinamide formyl PDBTitle: crystal structure of probable phosphoribosylglycinamide formyl2 transferase from pyrococcus horikoshii ot3 complexed with adp 84 d1zpda1 not modelled 27.0 12 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 85 d1zcca1 not modelled 26.5 9 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Glycerophosphoryl diester phosphodiesterase 86 c1z7eC_ not modelled 26.1 19 PDB header:hydrolase Chain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna 87 c3cx3A_ not modelled 26.0 11 PDB header:metal binding protein Chain: A: PDB Molecule:lipoprotein; PDBTitle: crystal structure analysis of the streptococcus pneumoniae2 adcaii protein 88 d1wraa1 not modelled 26.0 23 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Pce catalytic domain-like 89 d1eo1a_ not modelled 25.2 25 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:MTH1175-like 90 c2vhyB_ not modelled 24.0 9 PDB header:oxidoreductase Chain: B: PDB Molecule:alanine dehydrogenase; PDBTitle: crystal structure of apo l-alanine dehydrogenase from2 mycobacterium tuberculosis 91 c2bibA_ not modelled 22.2 23 PDB header:hydrolase Chain: A: PDB Molecule:teichoic acid phosphorylcholine esterase/ choline binding PDBTitle: crystal structure of the complete modular teichioic acid2 phosphorylcholine esterase pce (cbpe) from streptococcus3 pneumoniae 92 c1jdwA_ not modelled 22.0 18 PDB header:transferase Chain: A: PDB Molecule:l-arginine\:glycine amidinotransferase; PDBTitle: crystal structure and mechanism of l-arginine: glycine2 amidinotransferase: a mitochondrial enzyme involved in3 creatine biosynthesis 93 d1jdwa_ not modelled 22.0 18 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Amidinotransferase 94 d1krwa_ not modelled 21.6 19 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 95 d1xvla1 not modelled 21.1 17 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 96 c8jdwA_ not modelled 21.1 19 PDB header:transferase Chain: A: PDB Molecule:protein (l-arginine:glycine amidinotransferase); PDBTitle: crystal structure of human l-arginine:glycine2 amidinotransferase in complex with l-alanine 97 d1s9ra_ not modelled 20.8 27 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Arginine deiminase 98 c3d64A_ not modelled 20.6 16 PDB header:hydrolase Chain: A: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 burkholderia pseudomallei 99 d1bwda_ not modelled 19.4 21 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Amidinotransferase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0