PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3md9A_

Fold library id	PDB Header	Molecule	Title
c3md9A_	PDB header: transport protein	Chain: A: PDB Molecule: hemin-binding periplasmic protein hmut;	PDBTitle: structure of apo form of a periplasmic heme binding protein

Links to external resources
Added to library: Sat Sep 18 09:02:48 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A E R I V T I G G D V T E I A Y A L G A G D E I V A R D S T S Q Q P Q A A Q K L P D V G Y M R T L N A E G I L A M K P T M L L V S E L A Q P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
G G G
T T
S G G G G G S
B
T T S
T T
S T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S L V L T Q I A S S G V N V V T V P G Q T T P E S V A M K I N A V A T A L H Q T E K G Q K L I E D Y Q Q R L A A V N K T P L P V K V L F V M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T
T S
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S H G G L T P M A A G Q N T A A D A M I R A A G G S N A M Q G F S R Y R P L S Q E G V I A S A P D L L L I T T D G V K A L G S S E N I W K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
B S S T T
S
S
B S
S S S G G G G G G S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . .

Sequence P G M A L T P A G K H K R L L V V D D M A L L G F G L E T P Q V L A Q L R E K M E Q M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G S T T
S
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	E	R	I	V	T	I	G	G	D	V	T	E	I	A	Y	A	L	G	A	G	D	E	I	V	A	R	D	S	T	S	Q	Q	P	Q	A	A	Q	K	L	P	D	V	G	Y	M	R	T	L	N	A	E	G	I	L	A	M	K	P	T	M	L	L	V	S	E	L	A	Q	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S										T	T		G	G	G						T	T				S	G	G	G	G	G	S		B				T	T	S								T	T			S						T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	L	V	L	T	Q	I	A	S	S	G	V	N	V	V	T	V	P	G	Q	T	T	P	E	S	V	A	M	K	I	N	A	V	A	T	A	L	H	Q	T	E	K	G	Q	K	L	I	E	D	Y	Q	Q	R	L	A	A	V	N	K	T	P	L	P	V	K	V	L	F	V	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T											S																T																		T	S			S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	H	G	G	L	T	P	M	A	A	G	Q	N	T	A	A	D	A	M	I	R	A	A	G	G	S	N	A	M	Q	G	F	S	R	Y	R	P	L	S	Q	E	G	V	I	A	S	A	P	D	L	L	L	I	T	T	D	G	V	K	A	L	G	S	S	E	N	I	W	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S							B	S	S									T	T				S			S		B	S															S													S	S	G	G	G	G	G	G	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence	P	G	M	A	L	T	P	A	G	K	H	K	R	L	L	V	V	D	D	M	A	L	L	G	F	G	L	E	T	P	Q	V	L	A	Q	L	R	E	K	M	E	Q	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	G	G	G	S					T	T												S		S	T	T