PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2r79A_

Fold library id	PDB Header	Molecule	Title
c2r79A_	PDB header: transport protein	Chain: A: PDB Molecule: periplasmic binding protein;	PDBTitle: crystal structure of a periplasmic heme binding protein2 from pseudomonas aeruginosa

Links to external resources
Added to library: Tue Mar 16 13:59:33 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L P Q R W V S A G G S L S E W V V A L G G E S K L V G V D T T S Q H P Q A L K Q L P S V G Y Q R Q L A A E G V L A L R P D I L I G T E E M G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T
G G G
T T
S G G G G G S
B
G G G
T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P P P V L K Q L E G A G V R V E T L S A K P D L E A L E S N L K K L G D W L G V P Q R A E A A E L D Y R Q R L R R Q A D W I A A A Q K S Q P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S T
T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A P G V L L V I G N A G G Q L L V A G R N T G G D W V L N R A G A R N L A T H E G Y K P I S V E A L A A L D P V A V V I A D R S L E G D A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B S S T T
S B S
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . .

Sequence R A A L L K Q N P G L A P T R A A R D G R L L V L D P T L L V G G L G P R L P D G L A A L S A A F Y P S A K P L S T P L L G D D S T R T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T S T T
G G G G S S S S
T T
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	P	Q	R	W	V	S	A	G	G	S	L	S	E	W	V	V	A	L	G	G	E	S	K	L	V	G	V	D	T	T	S	Q	H	P	Q	A	L	K	Q	L	P	S	V	G	Y	Q	R	Q	L	A	A	E	G	V	L	A	L	R	P	D	I	L	I	G	T	E	E	M	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S					S										T	T		G	G	G						T	T				S	G	G	G	G	G	S		B				G	G	G								T	T			S						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	P	P	V	L	K	Q	L	E	G	A	G	V	R	V	E	T	L	S	A	K	P	D	L	E	A	L	E	S	N	L	K	K	L	G	D	W	L	G	V	P	Q	R	A	E	A	A	E	L	D	Y	R	Q	R	L	R	R	Q	A	D	W	I	A	A	A	Q	K	S	Q	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T										S	S																T																											T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	P	G	V	L	L	V	I	G	N	A	G	G	Q	L	L	V	A	G	R	N	T	G	G	D	W	V	L	N	R	A	G	A	R	N	L	A	T	H	E	G	Y	K	P	I	S	V	E	A	L	A	A	L	D	P	V	A	V	V	I	A	D	R	S	L	E	G	D	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T								B	S	S									T	T							S	B	S															S							S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Sequence	R	A	A	L	L	K	Q	N	P	G	L	A	P	T	R	A	A	R	D	G	R	L	L	V	L	D	P	T	L	L	V	G	G	L	G	P	R	L	P	D	G	L	A	A	L	S	A	A	F	Y	P	S	A	K	P	L	S	T	P	L	L	G	D	D	S	T	R	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									G	G	G	T	T	S					T	T							G	G	G	G	S	S	S	S		T	T														T	T	S