Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	V	F	D	N	N	G	I	E	L	K	A	E	C	S	I	G	E	E	D	G	V	Y	G	L	I	L	E	S	W	G	P	G	D	R	N	K	D	Y	N	I	A	L	D	Y	I	I	E	R	L	V	D	S	G	V	S	Q	V	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?											?	?	?		?								?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	Y	L	A	S	S	S	V	R	K	H	M	H	S	L	D	E	R	K	I	H	P	G	E	Y	F	T	L	I	G	N	S	P	R	D	I	R	L	K	M	C	G	Y	Q	A	Y	F	S	R	T	G	R	K	E	I	P	S	G	N	R
Secondary structure
SS confidence
Disorder								?					?				?	?	?	?																															?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	K	R	I	L	I	N	V	P	G	I	Y	S	D	S	F	W	A	S	I	I	R	G	E	L	S	E	L	S	Q	P	T	D	D	E	S	L	L	N	M	R	V	S	K	L	I	K	K	T	L	S	Q	P	E	G	S	R	K	P	V
Secondary structure
SS confidence
Disorder		?	?																																?	?	?	?											?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	V	E	R	L	Q	K	V	Y	V	R	D	P	M	V	K	A	W	I	L	Q	Q	S	K	G	I	C	E	N	C	G	K	N	A	P	F	Y	L	N	D	G	N	P	Y	L	E	V	H	H	V	I	P	L	S	S	G	G	A	D	T
Secondary structure
SS confidence
Disorder		?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Sequence		T	D	N	C	V	A	L	C	P	N	C	H	R	E	L	H	Y	S	K	N	A	K	E	L	I	E	M	L	Y	V	N	I	N	R	L	Q	K
Secondary structure
SS confidence
Disorder																	?		?	?	?															?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qgp chain A Region: 185 - 268 Aligned: 77 Modelled: 84 Confidence: 98.9% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. Phyre2 PDB 2gyk chain B domain 1 Region: 221 - 258 Aligned: 38 Modelled: 38 Confidence: 96.1% Identity: 34% Fold: His-Me finger endonucleases Superfamily: His-Me finger endonucleases Family: HNH-motif Phyre2 PDB 7cei chain B Region: 221 - 256 Aligned: 36 Modelled: 36 Confidence: 88.4% Identity: 31% PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein Phyre2 PDB 2qnf chain B Region: 194 - 255 Aligned: 51 Modelled: 62 Confidence: 82.7% Identity: 20% PDB header:hydrolase/dna Chain: B: PDB Molecule:recombination endonuclease vii; PDBTitle: crystal structure of t4 endonuclease vii h43n mutant in2 complex with heteroduplex dna containing base mismatches Phyre2 PDB 1e7l chain A domain 2 Region: 194 - 277 Aligned: 73 Modelled: 84 Confidence: 80.3% Identity: 22% Fold: His-Me finger endonucleases Superfamily: His-Me finger endonucleases Family: Recombination endonuclease VII, N-terminal domain Phyre2 PDB 2orv chain B Region: 204 - 252 Aligned: 38 Modelled: 49 Confidence: 76.1% Identity: 32% PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: human thymidine kinase 1 in complex with tp4a Phyre2 PDB 1w4r chain C Region: 204 - 254 Aligned: 40 Modelled: 51 Confidence: 72.2% Identity: 30% PDB header:transferase Chain: C: PDB Molecule:thymidine kinase; PDBTitle: structure of a type ii thymidine kinase with bound dttp Phyre2 PDB 2b8t chain A Region: 204 - 269 Aligned: 57 Modelled: 66 Confidence: 69.9% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from u.urealyticum in2 complex with thymidine Phyre2 PDB 2qq0 chain B Region: 204 - 255 Aligned: 41 Modelled: 52 Confidence: 66.5% Identity: 32% PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from thermotoga maritima in complex with2 thymidine + appnhp Phyre2 PDB 2jb0 chain B domain 1 Region: 221 - 255 Aligned: 34 Modelled: 35 Confidence: 63.0% Identity: 32% Fold: His-Me finger endonucleases Superfamily: His-Me finger endonucleases Family: HNH-motif Phyre2 PDB 2b8t chain A domain 2 Region: 206 - 269 Aligned: 59 Modelled: 64 Confidence: 59.5% Identity: 22% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Type II thymidine kinase zinc finger Phyre2 PDB 1xbt chain A domain 2 Region: 206 - 254 Aligned: 38 Modelled: 46 Confidence: 50.8% Identity: 29% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Type II thymidine kinase zinc finger Phyre2 PDB 3gox chain B Region: 151 - 274 Aligned: 91 Modelled: 100 Confidence: 44.7% Identity: 20% PDB header:hydrolase/dna Chain: B: PDB Molecule:restriction endonuclease hpy99i; PDBTitle: crystal structure of the beta-beta-alpha-me type ii restriction2 endonuclease hpy99i in the absence of edta Phyre2 PDB 1jhf chain A domain 1 Region: 44 - 98 Aligned: 50 Modelled: 55 Confidence: 42.6% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: LexA repressor, N-terminal DNA-binding domain Phyre2 PDB 1xx6 chain B Region: 204 - 252 Aligned: 41 Modelled: 49 Confidence: 40.5% Identity: 24% PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26. Phyre2 PDB 2iqj chain B Region: 190 - 255 Aligned: 45 Modelled: 45 Confidence: 38.4% Identity: 31% PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like Phyre2 PDB 3e2i chain A Region: 204 - 252 Aligned: 40 Modelled: 40 Confidence: 37.7% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from s. aureus Phyre2 PDB 2vr0 chain A Region: 202 - 275 Aligned: 61 Modelled: 74 Confidence: 34.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor Phyre2 PDB 1qdb chain A Region: 184 - 276 Aligned: 79 Modelled: 93 Confidence: 29.4% Identity: 24% Fold: Multiheme cytochromes Superfamily: Multiheme cytochromes Family: Di-heme elbow motif Phyre2 PDB 1tvt chain A Region: 160 - 227 Aligned: 49 Modelled: 57 Confidence: 27.3% Identity: 22% PDB header:transcription regulation Chain: A: PDB Molecule:transactivator protein; PDBTitle: structure of the equine infectious anemia virus tat protein Phyre2 1 c2qgpA_ 2 d2gykb1 3 c7ceiB_ 4 c2qnfB_ 5 d1e7la2 6 c2orvB_ 7 c1w4rC_ 8 c2b8tA_ 9 c2qq0B_ 10 d2jb0b1 11 d2b8ta2 12 d1xbta2 13 c3goxB_ 14 d1jhfa1 15 c1xx6B_ 16 c2iqjB_ 17 c3e2iA_ 18 c2vr0A_ 19 d1qdba_ 20 c1tvtA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qgpA_ 98.9 26 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 2 d2gykb1 96.1 34 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 3 c7ceiB_ 88.4 31 PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein 4 c2qnfB_ 82.7 20 PDB header:hydrolase/dna Chain: B: PDB Molecule:recombination endonuclease vii; PDBTitle: crystal structure of t4 endonuclease vii h43n mutant in2 complex with heteroduplex dna containing base mismatches 5 d1e7la2 80.3 22 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:Recombination endonuclease VII, N-terminal domain 6 c2orvB_ 76.1 32 PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: human thymidine kinase 1 in complex with tp4a 7 c1w4rC_ 72.2 30 PDB header:transferase Chain: C: PDB Molecule:thymidine kinase; PDBTitle: structure of a type ii thymidine kinase with bound dttp 8 c2b8tA_ 69.9 26 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from u.urealyticum in2 complex with thymidine 9 c2qq0B_ 66.5 32 PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from thermotoga maritima in complex with2 thymidine + appnhp 10 d2jb0b1 63.0 32 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 11 d2b8ta2 59.5 22 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 12 d1xbta2 50.8 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 13 c3goxB_ 44.7 20 PDB header:hydrolase/dna Chain: B: PDB Molecule:restriction endonuclease hpy99i; PDBTitle: crystal structure of the beta-beta-alpha-me type ii restriction2 endonuclease hpy99i in the absence of edta 14 d1jhfa1 42.6 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 15 c1xx6B_ 40.5 24 PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26. 16 c2iqjB_ 38.4 31 PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like 17 c3e2iA_ 37.7 20 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from s. aureus 18 c2vr0A_ 34.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor 19 d1qdba_ 29.4 24 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 20 c1tvtA_ 27.3 22 PDB header:transcription regulation Chain: A: PDB Molecule:transactivator protein; PDBTitle: structure of the equine infectious anemia virus tat protein 21 c3h7hA_ not modelled 24.2 26 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 22 d1vp8a_ not modelled 23.8 28 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 23 d2dj7a1 not modelled 23.3 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 24 c3lvrE_ not modelled 23.1 36 PDB header:protein transport Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain- PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium 25 c2ju5A_ not modelled 22.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin disulfide isomerase; PDBTitle: dsbh oxidoreductase 26 c2p57A_ not modelled 21.7 29 PDB header:metal binding protein Chain: A: PDB Molecule:gtpase-activating protein znf289; PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein 27 d2glia5 not modelled 21.5 46 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 28 d1jx6a_ not modelled 21.5 22 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 29 c2wy3B_ not modelled 21.0 48 PDB header:immune system/viral protein Chain: B: PDB Molecule:uncharacterized protein ul16; PDBTitle: structure of the hcmv ul16-micb complex elucidates select2 binding of a viral immunoevasin to diverse nkg2d ligands 30 c2f3oB_ not modelled 20.2 24 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 31 d1xx6a2 not modelled 19.8 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 32 c3hcwB_ not modelled 19.8 25 PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus 33 c2ja1A_ not modelled 19.3 21 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor. 34 c3m7kA_ not modelled 18.9 22 PDB header:hydrolase/dna Chain: A: PDB Molecule:restriction endonuclease paci; PDBTitle: crystal structure of paci-dna enzyme product complex 35 c3na7A_ not modelled 17.9 34 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 36 d1x3ha2 not modelled 17.7 35 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 37 d2jnea1 not modelled 17.5 54 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 38 c2jneA_ not modelled 17.5 54 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 39 c3iraA_ not modelled 17.1 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1 40 c1yshD_ not modelled 16.9 53 PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e 41 d1jj2y_ not modelled 16.5 26 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 42 d1r9da_ not modelled 16.1 22 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 43 c2x41A_ not modelled 16.1 42 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 44 c2d9lA_ not modelled 16.0 24 PDB header:gene regulation Chain: A: PDB Molecule:nucleoporin-like protein rip; PDBTitle: solution structure of the arfgap domain of human rip 45 c2zkrz_ not modelled 16.0 41 PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 46 c2j7aE_ not modelled 15.3 18 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris 47 c2jrpA_ not modelled 15.2 46 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 48 c3dwdB_ not modelled 15.0 31 PDB header:transport protein Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1; PDBTitle: crystal structure of the arfgap domain of human arfgap1 49 d1vqoz1 not modelled 14.8 21 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 50 c1fs9A_ not modelled 14.7 33 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex 51 c2b0oF_ not modelled 14.5 38 PDB header:metal binding protein Chain: F: PDB Molecule:uplc1; PDBTitle: crystal structure of uplc1 gap domain 52 c2joxA_ not modelled 14.1 28 PDB header:transcription Chain: A: PDB Molecule:churchill protein; PDBTitle: embryonic neural inducing factor churchill is not a dna-2 binding zinc finger protein: solution structure reveals a3 solvent-exposed beta-sheet and zinc binuclear cluster 53 c1i6hA_ not modelled 14.0 17 PDB header:transcription/dna-rna hybrid Chain: A: PDB Molecule:dna-directed rna polymerase ii largest subunit; PDBTitle: rna polymerase ii elongation complex 54 d2ic1a1 not modelled 13.9 26 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 55 c3qqcA_ not modelled 13.8 21 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain 56 d3elna1 not modelled 13.6 26 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I 57 c2y8nC_ not modelled 13.5 20 PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme 58 d1fs7a_ not modelled 13.3 33 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 59 c3cc4Z_ not modelled 13.3 24 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 60 c4a17Y_ not modelled 13.2 47 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 61 d1vh3a_ not modelled 12.8 21 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 62 d1ubdc1 not modelled 12.6 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 63 d1weoa_ not modelled 12.5 21 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 64 d1ffkw_ not modelled 12.4 19 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 65 d1inza_ not modelled 11.6 31 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:ENTH domain 66 c3f9uA_ not modelled 11.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein; PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis 67 d1twfa_ not modelled 10.9 17 Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime 68 c3jyw9_ not modelled 10.9 29 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 69 c1rikA_ not modelled 10.6 38 PDB header:de novo protein Chain: A: PDB Molecule:e6apc1 peptide; PDBTitle: e6-binding zinc finger (e6apc1) 70 d1hs5a_ not modelled 10.6 100 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 71 d1n5ga_ not modelled 10.5 33 Fold:Zinc finger domain of DNA polymerase-alpha Superfamily:Zinc finger domain of DNA polymerase-alpha Family:Zinc finger domain of DNA polymerase-alpha 72 d2fiya1 not modelled 10.4 32 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 73 c1x4lA_ not modelled 10.2 28 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2 74 c3cueH_ not modelled 9.9 25 PDB header:protein transport Chain: H: PDB Molecule:transport protein particle 31 kda subunit; PDBTitle: crystal structure of a trapp subassembly activating the rab2 ypt1p 75 c2qu7B_ not modelled 9.8 21 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus 76 d1h16a_ not modelled 9.6 20 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 77 c2l4zA_ not modelled 9.5 26 PDB header:hydrolase, metal binding protein Chain: A: PDB Molecule:dna endonuclease rbbp8, lim domain transcription factor PDBTitle: nmr structure of fusion of ctip (641-685) to lmo4-lim1 (18-82) 78 c3pnnA_ not modelled 9.2 22 PDB header:transferase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83 79 c3c3kA_ not modelled 9.1 20 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes 80 c3gbvB_ not modelled 9.1 13 PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis 81 c1m3vA_ not modelled 9.1 15 PDB header:metal binding protein Chain: A: PDB Molecule:fusion of the lim interacting domain of ldb1 and PDBTitle: flin4: fusion of the lim binding domain of ldb1 and the n-2 terminal lim domain of lmo4 82 c3o47A_ not modelled 9.1 28 PDB header:hydrolase, hydrolase activator Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp- PDBTitle: crystal structure of arfgap1-arf1 fusion protein 83 c3jywY_ not modelled 9.0 38 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 84 c2qh8A_ not modelled 8.9 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961 85 c1b8tA_ not modelled 8.9 32 PDB header:contractile Chain: A: PDB Molecule:protein (crp1); PDBTitle: solution structure of the chicken crp1 86 c1vhkA_ not modelled 8.8 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 87 c3fxhA_ not modelled 8.8 58 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:integron gene cassette protein hfx_cass2; PDBTitle: crystal structure from the mobile metagenome of halifax2 harbour sewage outfall: integron cassette protein hfx_cass2 88 c2zkr2_ not modelled 8.7 38 PDB header:ribosomal protein/rna Chain: 2: PDB Molecule:60s ribosomal protein l37e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 89 c2r5iL_ not modelled 8.7 33 PDB header:viral protein Chain: L: PDB Molecule:l1 protein; PDBTitle: pentamer structure of major capsid protein l1 of human2 papilloma virus type 18 90 c2o20H_ not modelled 8.5 30 PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis 91 c3ac0B_ not modelled 8.4 35 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 92 c1s1iY_ not modelled 8.3 38 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 93 d1qcva_ not modelled 8.3 20 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 94 c3gn5B_ not modelled 8.3 15 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 95 c3mizB_ not modelled 8.1 14 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli 96 d2yt9a2 not modelled 8.0 83 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 97 c3e56A_ not modelled 8.0 19 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the 2.0 angstrom resolution crystal structure of npr1517, a putative2 heterocyst differentiation inhibitor from nostoc punctiforme 98 d2dlqa4 not modelled 7.8 67 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 99 c1tjlD_ not modelled 7.8 56 PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0