Phyre 2 alignment of P24200 with c2qgpA_

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Job Description | P24200
Confidence | 98.95% | Date | Thu Jan 5 11:41:10 GMT 2012
Rank | 1 | Aligned Residues | 77
% Identity | 26% | Template | c2qgpA_
PDB info | PDB header:hydrolase | Chain: A: PDB Molecule:hnh endonuclease; | PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87.
Resolution | 2.60 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 185 | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 |  |  |  | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | Q | K | V | Y | V | R | D | P | M | V | K | A | W | I | L | . | . | . | Q | Q | S | K | G | I | C | E | N | C | G | K | N | A | P | F | Y | L | N | D | G | N | P | Y | L | E | V | H | H | V | I | P | L | S | S | G | G | A | D | T | T | D | N | C | V | A | L | C | P | N | C | H | R | E | L | H | Y | S | K | N | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | K | R | E | K | E | K | A | R | E | L | R | R | S | Q | W | W | K | N | R | I | A | R | G | I | C | H | Y | C | G | E | I | . | . | F | P | P | E | E | . | . | . | . | L | T | X | D | H | L | V | P | V | V | R | G | G | K | S | T | R | G | N | V | V | P | A | C | K | E | C | N | N | R | K | K | Y | L | L | P | V
Template Known Secondary structure |  |  | T | T | G | G | G | S |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  | T | B |  | T | T | T |  |  | B | . | . |  |  | G | G | G | . | . | . | . |  |  |  |  |  | S | S |  | T | T | T | T |  |  |  | S | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  | S |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . |  |  | . | . | . | . | . |  |  |  |  | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | .
|  | 262 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |
Query Sequence |  | K | E | L | I | E | M | L
Query Conservation |  |  |  |  |  |  |  |
Alig confidence |  | . |  |  |  |  |  |
Template Conservation |  | . |  |  |  |  |  |
Template Sequence |  | . | E | W | E | E | Y | L
Template Known Secondary structure |  | . |  |  |  |  |  |
Template Predicted Secondary structure |  | . |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |
|  |  | 87 | . | . | 90 | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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