Phyre 2 Results for P24200

Email | l.a.kelley@imperial.ac.uk
Description | P24200
Date | Thu Jan 5 11:41:10 GMT 2012
Unique Job ID | 992fcda1a66e33ca

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2qgpA_ |
|  | 98.9 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87.
2 | d2gykb1 |
|  | 96.1 | 34 | Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif
3 | c7ceiB_ |
|  | 88.4 | 31 | PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
4 | c2qnfB_ |
|  | 82.7 | 20 | PDB header:hydrolase/dna Chain: B: PDB Molecule:recombination endonuclease vii; PDBTitle: crystal structure of t4 endonuclease vii h43n mutant in2 complex with heteroduplex dna containing base mismatches
5 | d1e7la2 |
|  | 80.3 | 22 | Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:Recombination endonuclease VII, N-terminal domain
6 | c2orvB_ |
|  | 76.1 | 32 | PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: human thymidine kinase 1 in complex with tp4a
7 | c1w4rC_ |
|  | 72.2 | 30 | PDB header:transferase Chain: C: PDB Molecule:thymidine kinase; PDBTitle: structure of a type ii thymidine kinase with bound dttp
8 | c2b8tA_ |
|  | 69.9 | 26 | PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from u.urealyticum in2 complex with thymidine
9 | c2qq0B_ |
|  | 66.5 | 32 | PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from thermotoga maritima in complex with2 thymidine + appnhp
10 | d2jb0b1 |
|  | 63.0 | 32 | Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif
11 | d2b8ta2 |
|  | 59.5 | 22 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger
12 | d1xbta2 |
|  | 50.8 | 29 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger
13 | c3goxB_ |
|  | 44.7 | 20 | PDB header:hydrolase/dna Chain: B: PDB Molecule:restriction endonuclease hpy99i; PDBTitle: crystal structure of the beta-beta-alpha-me type ii restriction2 endonuclease hpy99i in the absence of edta
14 | d1jhfa1 |
|  | 42.6 | 22 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain
15 | c1xx6B_ |
|  | 40.5 | 24 | PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26.
16 | c2iqjB_ |
|  | 38.4 | 31 | PDB header:protein transport Chain: B: PDB Molecule:stromal membrane-associated protein 1-like; PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like
17 | c3e2iA_ |
|  | 37.7 | 20 | PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from s. aureus
18 | c2vr0A_ |
|  | 34.0 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor
19 | d1qdba_ |
|  | 29.4 | 24 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
20 | c1tvtA_ |
|  | 27.3 | 22 | PDB header:transcription regulation Chain: A: PDB Molecule:transactivator protein; PDBTitle: structure of the equine infectious anemia virus tat protein
21 | c3h7hA_ |
| not modelled | 24.2 | 26 | PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273)
22 | d1vp8a_ |
| not modelled | 23.8 | 28 | Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like
23 | d2dj7a1 |
| not modelled | 23.3 | 33 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
24 | c3lvrE_ |
| not modelled | 23.1 | 36 | PDB header:protein transport Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain- PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
25 | c2ju5A_ |
| not modelled | 22.0 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin disulfide isomerase; PDBTitle: dsbh oxidoreductase
26 | c2p57A_ |
| not modelled | 21.7 | 29 | PDB header:metal binding protein Chain: A: PDB Molecule:gtpase-activating protein znf289; PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein
27 | d2glia5 |
| not modelled | 21.5 | 46 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
28 | d1jx6a_ |
| not modelled | 21.5 | 22 | Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like
29 | c2wy3B_ |
| not modelled | 21.0 | 48 | PDB header:immune system/viral protein Chain: B: PDB Molecule:uncharacterized protein ul16; PDBTitle: structure of the hcmv ul16-micb complex elucidates select2 binding of a viral immunoevasin to diverse nkg2d ligands
30 | c2f3oB_ |
| not modelled | 20.2 | 24 | PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus
31 | d1xx6a2 |
| not modelled | 19.8 | 29 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger
32 | c3hcwB_ |
| not modelled | 19.8 | 25 | PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus
33 | c2ja1A_ |
| not modelled | 19.3 | 21 | PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor.
34 | c3m7kA_ |
| not modelled | 18.9 | 22 | PDB header:hydrolase/dna Chain: A: PDB Molecule:restriction endonuclease paci; PDBTitle: crystal structure of paci-dna enzyme product complex
35 | c3na7A_ |
| not modelled | 17.9 | 34 | PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
36 | d1x3ha2 |
| not modelled | 17.7 | 35 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
37 | d2jnea1 |
| not modelled | 17.5 | 54 | Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like
38 | c2jneA_ |
| not modelled | 17.5 | 54 | PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317.
39 | c3iraA_ |
| not modelled | 17.1 | 25 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1
40 | c1yshD_ |
| not modelled | 16.9 | 53 | PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e
41 | d1jj2y_ |
| not modelled | 16.5 | 26 | Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae
42 | d1r9da_ |
| not modelled | 16.1 | 22 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
43 | c2x41A_ |
| not modelled | 16.1 | 42 | PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose
44 | c2d9lA_ |
| not modelled | 16.0 | 24 | PDB header:gene regulation Chain: A: PDB Molecule:nucleoporin-like protein rip; PDBTitle: solution structure of the arfgap domain of human rip
45 | c2zkrz_ |
| not modelled | 16.0 | 41 | PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
46 | c2j7aE_ |
| not modelled | 15.3 | 18 | PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa; PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
47 | c2jrpA_ |
| not modelled | 15.2 | 46 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86
48 | c3dwdB_ |
| not modelled | 15.0 | 31 | PDB header:transport protein Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1; PDBTitle: crystal structure of the arfgap domain of human arfgap1
49 | d1vqoz1 |
| not modelled | 14.8 | 21 | Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae
50 | c1fs9A_ |
| not modelled | 14.7 | 33 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c nitrite reductase; PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex
51 | c2b0oF_ |
| not modelled | 14.5 | 38 | PDB header:metal binding protein Chain: F: PDB Molecule:uplc1; PDBTitle: crystal structure of uplc1 gap domain
52 | c2joxA_ |
| not modelled | 14.1 | 28 | PDB header:transcription Chain: A: PDB Molecule:churchill protein; PDBTitle: embryonic neural inducing factor churchill is not a dna-2 binding zinc finger protein: solution structure reveals a3 solvent-exposed beta-sheet and zinc binuclear cluster
53 | c1i6hA_ |
| not modelled | 14.0 | 17 | PDB header:transcription/dna-rna hybrid Chain: A: PDB Molecule:dna-directed rna polymerase ii largest subunit; PDBTitle: rna polymerase ii elongation complex
54 | d2ic1a1 |
| not modelled | 13.9 | 26 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I
55 | c3qqcA_ |
| not modelled | 13.8 | 21 | PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain
56 | d3elna1 |
| not modelled | 13.6 | 26 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Cysteine dioxygenase type I
57 | c2y8nC_ |
| not modelled | 13.5 | 20 | PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme
58 | d1fs7a_ |
| not modelled | 13.3 | 33 | Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif
59 | c3cc4Z_ |
| not modelled | 13.3 | 24 | PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
60 | c4a17Y_ |
| not modelled | 13.2 | 47 | PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
61 | d1vh3a_ |
| not modelled | 12.8 | 21 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
62 | d1ubdc1 |
| not modelled | 12.6 | 50 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
63 | d1weoa_ |
| not modelled | 12.5 | 21 | Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4
64 | d1ffkw_ |
| not modelled | 12.4 | 19 | Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae
65 | d1inza_ |
| not modelled | 11.6 | 31 | Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:ENTH domain
66 | c3f9uA_ |
| not modelled | 11.1 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein; PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis
67 | d1twfa_ |
| not modelled | 10.9 | 17 | Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase Family:RNA-polymerase beta-prime
68 | c3jyw9_ |
| not modelled | 10.9 | 29 | PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
69 | c1rikA_ |
| not modelled | 10.6 | 38 | PDB header:de novo protein Chain: A: PDB Molecule:e6apc1 peptide; PDBTitle: e6-binding zinc finger (e6apc1)
70 | d1hs5a_ |
| not modelled | 10.6 | 100 | Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain
71 | d1n5ga_ |
| not modelled | 10.5 | 33 | Fold:Zinc finger domain of DNA polymerase-alpha Superfamily:Zinc finger domain of DNA polymerase-alpha Family:Zinc finger domain of DNA polymerase-alpha
72 | d2fiya1 |
| not modelled | 10.4 | 32 | Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like
73 | c1x4lA_ |
| not modelled | 10.2 | 28 | PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2
74 | c3cueH_ |
| not modelled | 9.9 | 25 | PDB header:protein transport Chain: H: PDB Molecule:transport protein particle 31 kda subunit; PDBTitle: crystal structure of a trapp subassembly activating the rab2 ypt1p
75 | c2qu7B_ |
| not modelled | 9.8 | 21 | PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus
76 | d1h16a_ |
| not modelled | 9.6 | 20 | Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like
77 | c2l4zA_ |
| not modelled | 9.5 | 26 | PDB header:hydrolase, metal binding protein Chain: A: PDB Molecule:dna endonuclease rbbp8, lim domain transcription factor PDBTitle: nmr structure of fusion of ctip (641-685) to lmo4-lim1 (18-82)
78 | c3pnnA_ |
| not modelled | 9.2 | 22 | PDB header:transferase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83
79 | c3c3kA_ |
| not modelled | 9.1 | 20 | PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes
80 | c3gbvB_ |
| not modelled | 9.1 | 13 | PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis
81 | c1m3vA_ |
| not modelled | 9.1 | 15 | PDB header:metal binding protein Chain: A: PDB Molecule:fusion of the lim interacting domain of ldb1 and PDBTitle: flin4: fusion of the lim binding domain of ldb1 and the n-2 terminal lim domain of lmo4
82 | c3o47A_ |
| not modelled | 9.1 | 28 | PDB header:hydrolase, hydrolase activator Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp- PDBTitle: crystal structure of arfgap1-arf1 fusion protein
83 | c3jywY_ |
| not modelled | 9.0 | 38 | PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
84 | c2qh8A_ |
| not modelled | 8.9 | 10 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961
85 | c1b8tA_ |
| not modelled | 8.9 | 32 | PDB header:contractile Chain: A: PDB Molecule:protein (crp1); PDBTitle: solution structure of the chicken crp1
86 | c1vhkA_ |
| not modelled | 8.8 | 24 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein
87 | c3fxhA_ |
| not modelled | 8.8 | 58 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:integron gene cassette protein hfx_cass2; PDBTitle: crystal structure from the mobile metagenome of halifax2 harbour sewage outfall: integron cassette protein hfx_cass2
88 | c2zkr2_ |
| not modelled | 8.7 | 38 | PDB header:ribosomal protein/rna Chain: 2: PDB Molecule:60s ribosomal protein l37e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
89 | c2r5iL_ |
| not modelled | 8.7 | 33 | PDB header:viral protein Chain: L: PDB Molecule:l1 protein; PDBTitle: pentamer structure of major capsid protein l1 of human2 papilloma virus type 18
90 | c2o20H_ |
| not modelled | 8.5 | 30 | PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis
91 | c3ac0B_ |
| not modelled | 8.4 | 35 | PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose
92 | c1s1iY_ |
| not modelled | 8.3 | 38 | PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l37-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
93 | d1qcva_ |
| not modelled | 8.3 | 20 | Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin
94 | c3gn5B_ |
| not modelled | 8.3 | 15 | PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
95 | c3mizB_ |
| not modelled | 8.1 | 14 | PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli
96 | d2yt9a2 |
| not modelled | 8.0 | 83 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
97 | c3e56A_ |
| not modelled | 8.0 | 19 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the 2.0 angstrom resolution crystal structure of npr1517, a putative2 heterocyst differentiation inhibitor from nostoc punctiforme
98 | d2dlqa4 |
| not modelled | 7.8 | 67 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
99 | c1tjlD_ |
| not modelled | 7.8 | 56 | PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli