Phyre 2 alignment of P24200 with c1i6hA_

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Job Description | P24200
Confidence | 14.04% | Date | Thu Jan 5 11:41:10 GMT 2012
Rank | 53 | Aligned Residues | 47
% Identity | 17% | Template | c1i6hA_
PDB info | PDB header:transcription/dna-rna hybrid | Chain: A: PDB Molecule:dna-directed rna polymerase ii largest subunit; | PDBTitle: rna polymerase ii elongation complex
Resolution | 3.30 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 204 | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . |  |  | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | G | I | C | E | N | C | G | K | N | A | P | F | Y | L | N | D | G | N | P | Y | L | E | V | H | H | V | I | P | L | S | S | G | G | A | . | . | D | T | T | D | N | C | V | A | L | C | P | N | C | H | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | N | L | K | C | Q | T | C | Q | E | G | M | N | E | C | P | G | H | . | F | G | H | I | D | L | . | . | A | K | P | V | F | H | V | G | F | I | A | K | I | K | K | V | C | E | C | V | C | M | H | C | G | K
Template Known Secondary structure |  |  |  |  | S | T | T |  |  |  |  | S | S | S |  |  |  |  | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  | G | G | G |  |  |  |  |  |  |  |  | T | T |  |  | T | T | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 64 | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |  | . | . | . | . | . | . |  |  | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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