 |
| Job Description | P24200 | | Confidence | 10.92% | Date | Thu Jan 5 11:41:10 GMT 2012 |
| Rank | 67 | Aligned Residues | 48 |
| % Identity | 17% | Template | d1twfa_ |
| SCOP info | beta and beta-prime subunits of DNA dependent RNA-polymerase
| beta and beta-prime subunits of DNA dependent RNA-polymerase
| RNA-polymerase beta-prime
|
| Resolution | 2.30 |
|
|   |   |
204 | . | . | . | . | . | 210 | . | . | . | |
. | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . |
| Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
| . |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
K | G | I | C | E | N | C | G | K | N | . |
A | P | F | Y | L | N | D | G | N | P | Y | L | E | V | H | H | V | I | P | L | S | S | G | G | A | D | T | T | D | N | C | V | A | L | C | P | N | C | H | R |
| Query Conservation |   |
|
|
|
|
|
|
|
|   |   | . |
|
|
|   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |
|   |
|
|   |   |   |   |   |   |
|   |
|
|
|
|
|
|   |
|   |   |
|
|   |   |   |   |   |   |   | . | . |   |   |   |   |
|
|   |   |
|
|   |   |
|   |   |
| Template Sequence |   |
N | L | K | C | Q | T | C | Q | E | G | M | N | E | C | P | G | H | F | G | H | I | D | L | A | K | P | V | F | H | V | G | F | I | A | . |
. |
K | I | K | K | V | C | E | C | V | C | M | H | C | G | K |
| Template Known Secondary structure |   |
|
|
| S | S | S |
|
|
|
| T | T | S |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
| G | G | G |  |  | . | . |  |  |  |  |  |  |  |  | B |
| T | T | T |
|
|
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
64 | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | |
|
. | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|