Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	T	T	Q	Q	N	A	P	L	K	R	T	M	K	T	R	H	L	I	M	L	S	L	G	G	V	I	G	T	G	L	F	F	N	T	G	Y	I	I	S	T	T	G	A	A	G	T	L	L	A	Y	L	I	G	A	L	V	V	W
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	V	M	Q	C	L	G	E	L	S	V	A	M	P	E	T	G	A	F	H	V	Y	A	A	R	Y	L	G	P	A	T	G	Y	T	V	A	W	L	Y	W	L	T	W	T	V	A	L	G	S	S	F	T	A	A	G	F	C	M	Q	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		W	F	P	Q	V	P	V	W	V	W	C	V	V	F	C	A	I	I	F	G	L	N	V	I	S	T	R	F	F	A	E	G	E	F	W	F	S	L	V	K	V	V	T	I	I	A	F	I	I	L	G	G	A	A	I	F	G	F	I	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	Q	D	G	S	P	A	P	G	L	S	N	I	T	A	E	G	W	F	P	H	G	G	L	P	I	L	M	T	M	V	A	V	N	F	A	F	S	G	T	E	L	I	G	I	A	A	G	E	T	E	N	P	R	K	V	I	P	V	A
Secondary structure
SS confidence
Disorder																																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	R	T	T	I	A	R	L	I	I	F	F	I	G	T	V	F	V	L	A	A	L	I	P	M	Q	Q	V	G	V	E	K	S	P	F	V	L	V	F	E	K	V	G	I	P	Y	A	A	D	I	F	N	F	V	I	L	T	A	I	L
Secondary structure
SS confidence
Disorder																												?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	A	A	N	S	G	L	Y	A	S	G	R	M	L	W	S	L	S	N	E	R	T	L	P	A	C	F	A	R	V	T	K	N	G	V	P	L	T	A	L	S	V	S	M	L	G	G	V	L	A	L	F	S	S	V	V	A	P	D	T
Secondary structure
SS confidence
Disorder																																																							?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		V	F	V	A	L	S	A	I	S	G	F	A	V	V	A	V	W	L	S	I	C	A	S	H	F	V	F	R	R	R	H	L	Q	Q	G	K	A	L	S	E	L	H	Y	R	A	P	W	Y	P	L	V	P	V	L	G	F	V	L	C	L
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Sequence		V	A	C	V	G	L	A	F	D	P	A	Q	R	I	A	L	W	C	G	L	P	F	V	A	L	C	Y	G	A	Y	F	L	T	Q	P	R	N	A	K	Q	E	P	E	H	V	A	E
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3gia chain A Region: 11 - 464 Aligned: 424 Modelled: 424 Confidence: 100.0% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Phyre2 PDB 3lrc chain C Region: 11 - 461 Aligned: 404 Modelled: 404 Confidence: 100.0% Identity: 21% PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Phyre2 PDB 2jln chain A Region: 2 - 467 Aligned: 448 Modelled: 448 Confidence: 99.9% Identity: 11% PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Phyre2 PDB 2xq2 chain A Region: 12 - 467 Aligned: 438 Modelled: 438 Confidence: 99.3% Identity: 9% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt Phyre2 PDB 3dh4 chain A Region: 12 - 465 Aligned: 436 Modelled: 441 Confidence: 99.2% Identity: 10% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Phyre2 PDB 2a65 chain A domain 1 Region: 15 - 460 Aligned: 435 Modelled: 435 Confidence: 97.3% Identity: 14% Fold: SNF-like Superfamily: SNF-like Family: SNF-like Phyre2 PDB 2w8a chain C Region: 7 - 402 Aligned: 385 Modelled: 368 Confidence: 96.1% Identity: 10% PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Phyre2 PDB 3hfx chain A Region: 87 - 394 Aligned: 300 Modelled: 308 Confidence: 79.0% Identity: 10% PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Phyre2 PDB 3m7b chain A Region: 336 - 465 Aligned: 128 Modelled: 130 Confidence: 57.0% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tellurite resistance protein teha homolog; PDBTitle: crystal structure of plant slac1 homolog teha Phyre2 PDB 2knc chain A Region: 430 - 467 Aligned: 38 Modelled: 38 Confidence: 46.2% Identity: 8% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 2rdd chain B Region: 438 - 464 Aligned: 27 Modelled: 27 Confidence: 40.6% Identity: 26% PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. Phyre2 PDB 1fft chain B domain 2 Region: 359 - 425 Aligned: 67 Modelled: 67 Confidence: 37.8% Identity: 9% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region Phyre2 PDB 3qnq chain D Region: 420 - 467 Aligned: 48 Modelled: 48 Confidence: 22.2% Identity: 8% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Phyre2 PDB 2klu chain A Region: 438 - 465 Aligned: 28 Modelled: 28 Confidence: 21.6% Identity: 14% PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 Phyre2 PDB 2qjk chain M Region: 371 - 467 Aligned: 97 Modelled: 97 Confidence: 20.1% Identity: 10% PDB header:electron transport Chain: M: PDB Molecule:cytochrome b; PDBTitle: crystal structure analysis of mutant rhodobacter2 sphaeroides bc1 with stigmatellin and antimycin Phyre2 PDB 2voy chain G Region: 4 - 28 Aligned: 25 Modelled: 25 Confidence: 19.1% Identity: 16% PDB header:hydrolase Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus Phyre2 PDB 1m57 chain H Region: 359 - 424 Aligned: 66 Modelled: 66 Confidence: 18.6% Identity: 12% PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) Phyre2 PDB 1pw4 chain A Region: 1 - 467 Aligned: 404 Modelled: 412 Confidence: 17.4% Identity: 11% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter Phyre2 PDB 3rko chain F Region: 335 - 462 Aligned: 128 Modelled: 128 Confidence: 16.1% Identity: 10% PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 2jp3 chain A Region: 424 - 467 Aligned: 44 Modelled: 44 Confidence: 15.9% Identity: 11% PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles Phyre2 1 c3giaA_ 2 c3lrcC_ 3 c2jlnA_ 4 c2xq2A_ 5 c3dh4A_ 6 d2a65a1 7 c2w8aC_ 8 c3hfxA_ 9 c3m7bA_ 10 c2kncA_ 11 c2rddB_ 12 d1fftb2 13 c3qnqD_ 14 c2kluA_ 15 c2qjkM_ 16 c2voyG_ 17 c1m57H_ 18 d1pw4a_ 19 c3rkoF_ 20 c2jp3A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3giaA_ 100.0 16 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter 2 c3lrcC_ 100.0 21 PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) 3 c2jlnA_ 99.9 11 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 4 c2xq2A_ 99.3 9 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 5 c3dh4A_ 99.2 10 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 6 d2a65a1 97.3 14 Fold:SNF-like Superfamily:SNF-like Family:SNF-like 7 c2w8aC_ 96.1 10 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 8 c3hfxA_ 79.0 10 PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter 9 c3m7bA_ 57.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tellurite resistance protein teha homolog; PDBTitle: crystal structure of plant slac1 homolog teha 10 c2kncA_ 46.2 8 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 11 c2rddB_ 40.6 26 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 12 d1fftb2 37.8 9 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 13 c3qnqD_ 22.2 8 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 14 c2kluA_ 21.6 14 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 15 c2qjkM_ 20.1 10 PDB header:electron transport Chain: M: PDB Molecule:cytochrome b; PDBTitle: crystal structure analysis of mutant rhodobacter2 sphaeroides bc1 with stigmatellin and antimycin 16 c2voyG_ 19.1 16 PDB header:hydrolase Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 17 c1m57H_ 18.6 12 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 18 d1pw4a_ 17.4 11 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 19 c3rkoF_ 16.1 10 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 20 c2jp3A_ 15.9 11 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 21 d3dtub2 not modelled 15.3 12 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 22 d3ehbb2 not modelled 15.0 19 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 23 c1qleB_ not modelled 14.6 19 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 24 c1ar1B_ not modelled 14.6 19 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 25 c1fftG_ not modelled 14.3 9 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 26 c1ujlA_ not modelled 13.9 10 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker 27 c2bbjB_ not modelled 13.6 6 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 28 d3dhwa1 not modelled 13.3 12 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 29 d1jt8a_ not modelled 13.2 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 30 c3cwbQ_ not modelled 13.1 17 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 31 c3aqpB_ not modelled 13.0 11 PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus 32 d1iwga8 not modelled 12.5 9 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 33 c3ixzA_ not modelled 11.8 12 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 34 d2yvxa3 not modelled 11.8 19 Fold:MgtE membrane domain-like Superfamily:MgtE membrane domain-like Family:MgtE membrane domain-like 35 d1niga_ not modelled 11.8 21 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Hypothetical protein Ta1238 36 d1pv7a_ not modelled 11.4 10 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 37 c3rkoK_ not modelled 11.3 12 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 38 c1qcrD_ not modelled 11.2 17 PDB header: PDB COMPND: 39 c2e2sA_ not modelled 11.1 11 PDB header:toxin Chain: A: PDB Molecule:agelenin; PDBTitle: solution structure of agelenin, an insecticidal peptide2 from the venom of agelena opulenta 40 c2k21A_ not modelled 11.1 20 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 41 c2cpbA_ not modelled 10.8 29 PDB header:viral protein Chain: A: PDB Molecule:m13 major coat protein; PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures 42 c2k1kB_ not modelled 10.8 17 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 43 c2k1lB_ not modelled 10.8 17 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 44 c2k1lA_ not modelled 10.8 17 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 45 c2k1kA_ not modelled 10.8 17 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 46 c3aa0C_ not modelled 10.0 38 PDB header:protein binding Chain: C: PDB Molecule:21mer peptide from leucine-rich repeat-containing protein PDBTitle: crystal structure of actin capping protein in complex with the cp-2 binding motif derived from carmil 47 c2xutC_ not modelled 9.9 7 PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. 48 c2jo1A_ not modelled 9.9 11 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 49 c3b8eC_ not modelled 9.7 8 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 50 c1p84D_ not modelled 9.6 14 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 51 d1otsa_ not modelled 9.5 22 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 52 d1zela1 not modelled 9.3 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rv2827c N-terminal domain-like 53 c2jwyA_ not modelled 9.1 13 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yaji; PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540 54 d2iuba2 not modelled 9.1 3 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 55 d1g2913 not modelled 9.0 29 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 56 d2nr9a1 not modelled 9.0 22 Fold:Rhomboid-like Superfamily:Rhomboid-like Family:Rhomboid-like 57 c3fh6F_ not modelled 8.9 13 PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli 58 c1oy8A_ not modelled 8.9 7 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 59 c2dmpA_ not modelled 8.9 10 PDB header:dna binding protein Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2; PDBTitle: solution structure of the third homeobox domain of zinc2 fingers and homeoboxes protein 2 60 c3njcA_ not modelled 8.7 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yslb protein; PDBTitle: crystal structure of the yslb protein from bacillus subtilis.2 northeast structural genomics consortium target sr460. 61 d1v54d_ not modelled 8.7 8 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 62 c2y69Q_ not modelled 8.6 8 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 63 c2h3oA_ not modelled 8.5 18 PDB header:membrane protein Chain: A: PDB Molecule:merf; PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices 64 d2oara1 not modelled 8.4 17 Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel 65 c2oarA_ not modelled 8.3 14 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) 66 c2k1aA_ not modelled 8.2 9 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 67 c2l3hA_ not modelled 8.2 7 PDB header:hydrolase Chain: A: PDB Molecule:prostatic acid phosphatase; PDBTitle: nmr structure in a membrane environment reveals putative amyloidogenic2 regions of the sevi precursor peptide pap248-286 68 d1j9ia_ not modelled 8.2 15 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Terminase gpNU1 subunit domain 69 c3ixxE_ not modelled 8.2 25 PDB header:virus Chain: E: PDB Molecule:peptide pr; PDBTitle: the pseudo-atomic structure of west nile immature virus in2 complex with fab fragments of the anti-fusion loop antibody3 e53 70 c3r7gB_ not modelled 8.1 8 PDB header:protein binding Chain: B: PDB Molecule:formin-2; PDBTitle: crystal structure of spire kind domain in complex with the tail of2 fmn2 71 c2jo8B_ not modelled 8.1 27 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase 4; PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1) 72 d1rhzb_ not modelled 8.0 18 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 73 c2cblA_ not modelled 8.0 24 PDB header:complex (proto-oncogene/peptide) Chain: A: PDB Molecule:proto-oncogene cbl; PDBTitle: n-terminal domain of cbl in complex with its binding site2 on zap-70 74 d1zh5a1 not modelled 8.0 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain 75 c3bunB_ not modelled 8.0 24 PDB header:ligase/signaling protein Chain: B: PDB Molecule:e3 ubiquitin-protein ligase cbl; PDBTitle: crystal structure of c-cbl-tkb domain complexed with its2 binding motif in sprouty4 76 d1t98a2 not modelled 7.9 21 Fold:STAT-like Superfamily:MukF C-terminal domain-like Family:MukF C-terminal domain-like 77 c1wazA_ not modelled 7.8 15 PDB header:transport protein Chain: A: PDB Molecule:merf; PDBTitle: nmr structure determination of the bacterial mercury2 transporter, merf, in micelles 78 d1eysh2 not modelled 7.7 19 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 79 c3lk2T_ not modelled 7.7 50 PDB header:protein binding Chain: T: PDB Molecule:leucine-rich repeat-containing protein 16a; PDBTitle: crystal structure of capz bound to the uncapping motif from carmil 80 c3c6eC_ not modelled 7.7 43 PDB header:viral protein Chain: C: PDB Molecule:prm; PDBTitle: crystal structure of the precursor membrane protein- envelope protein2 heterodimer from the dengue 2 virus at neutral ph 81 c3mk7F_ not modelled 7.7 8 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 82 c3opyJ_ not modelled 7.6 18 PDB header:transferase Chain: J: PDB Molecule:6-phosphofructo-1-kinase gamma-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 83 c3opyL_ not modelled 7.6 18 PDB header:transferase Chain: L: PDB Molecule:6-phosphofructo-1-kinase gamma-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 84 c3p5nA_ not modelled 7.6 7 PDB header:transport protein Chain: A: PDB Molecule:riboflavin uptake protein; PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter 85 c3hzqA_ not modelled 7.6 12 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: structure of a tetrameric mscl in an expanded intermediate2 state 86 c3c6rE_ not modelled 7.5 43 PDB header:virus Chain: E: PDB Molecule:peptide pr; PDBTitle: low ph immature dengue virus 87 c2k9yB_ not modelled 7.4 13 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 88 c2k9yA_ not modelled 7.4 13 PDB header:transferase Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 89 d2h8pc1 not modelled 7.3 9 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 90 c3nauA_ not modelled 7.3 11 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2; PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2) 91 d1zyba1 not modelled 7.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 92 d1rh5b_ not modelled 7.2 18 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 93 d2ecba1 not modelled 7.2 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 94 c2zxeA_ not modelled 7.2 11 PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 95 d2e2ca_ not modelled 7.2 14 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 96 c2l2tA_ not modelled 7.1 11 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 97 c3iz5d_ not modelled 7.0 19 PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l4 (l4p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 98 d1ubdc2 not modelled 7.0 43 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 99 c3op0B_ not modelled 7.0 18 PDB header:signaling protein/signaling protein regu Chain: B: PDB Molecule:signal transduction protein cbl-c; PDBTitle: crystal structure of cbl-c (cbl-3) tkb domain in complex with egfr2 py1069 peptide

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0