Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3hfxA_

Fold library idPDB HeaderMoleculeTitle
c3hfxA_PDB header: transport proteinChain: A: PDB Molecule: l-carnitine/gamma-butyrobetaine antiporter;PDBTitle: crystal structure of carnitine transporter


Added to library: Sat Aug 28 21:38:08 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGN
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP)
TTTTTTT
SSSTTS
SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYS
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) S

SS
T



SS
STT

TT
TS
 .........150.........160.........170.........180.........190.........200.........210
Sequence FLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQW
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TS




SSGGGG
TTT
SS
TTSSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVG
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) STT


TSS


TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence MLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWI
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) T



SS


TTT
SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence LWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLA
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) TTS


GGG
TSSSTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence MSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQN
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) TTS
SSSSS
SS
STT
SST
 ...
Sequence WKD
Predicted secondary structure

SS confidence


Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D