Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ9JMS5
DateWed Jan 25 15:21:16 GMT 2012
Unique Job ID8f820e0254565e26

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3aehB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp
Confidence and coverage
Confidence:100.0% Coverage: 15%
262 residues ( 15% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
975 residues ( 55%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MCFFLGSRLAYAENIDGSSTISNRDISGSLNIGINKDANIDINGTVNIKDYFSVATCNGQ
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Disorder  ??

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   .........70.........80.........90.........100.........110.........120
Sequence  SSTCPEGGLNASAKIDKSASVGASVTIVGDSSKGELNIDGGSTLYTQQLWVSGNDNDKTS
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   .........130.........140.........150.........160.........170.........180
Sequence  NVSDDSNGSLSINNGSNVFVVSSQDDTPFKTNSVKWNQNIISQGNNITDGTVSSGDLVLG
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   .........190.........200.........210.........220.........230.........240
Sequence  KTGNGIIDIDNNSKLDVKNDVVVSTGVDGIPNEKPSEINIKNESNFSVHGDMKGGISAAG
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   .........250.........260.........270.........280.........290.........300
Sequence  KLNLNMDNSSNLHVDKNIAVGIGRESNITVSASRESSIFSDGNFTVATGNNSNANLKLDA
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   .........310.........320.........330.........340.........350.........360
Sequence  SNLSVNGVSTIGSGDGSITKFDIKNGSVVTSSSDMTLAKGKGTQANINISSSELNTGSLS
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   .........370.........380.........390.........400.........410.........420
Sequence  VGEGDNADVKMTGSGASVSSKKTFTVAKGNNASATLNYTGSKIDIGSGYIGEGESAKTQL
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   .........430.........440.........450.........460.........470.........480
Sequence  ELNNSALTASGKVFIGQGNTTQTNLTLNDKSSVNVSGEMSVAQGSSASVDVTATNAVLSA
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   .........490.........500.........510.........520.........530.........540
Sequence  DSLSLGGGEAAKVTMTGSGATVSSKNTFTVAKGNNASATLDYTDSKIDIGSGYIGEGEAA
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   .........550.........560.........570.........580.........590.........600
Sequence  KTQLELNNSALTASGKVFIGQGNTTQTNLTLNDKSSVNVSDEMSVAQGSSASVDVTITNA
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   .........610.........620.........630.........640.........650.........660
Sequence  VLSADSLSLGGGEAAKVTMTGNRATISSGNTFTVAKGNNASATLDYSDSKINIGNGYIGG
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   .........670.........680.........690.........700.........710.........720
Sequence  GEKAQTVLTLKDSALAATGDVIMGQGQETQTDLTLSPQSSIKVSGNMSIAQGNAASAKVI
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   .........730.........740.........750.........760.........770.........780
Sequence  VDNADLSANSMSIGEGDTAAVTMTGNGATISSGNTFTVARGNNASATLDYSDSKINIGNG
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   .........790.........800.........810.........820.........830.........840
Sequence  YIGGGEKAQTVLTLKDSALAATGDVIMGQGQETQTDLTLSPQSSIKVSGNMSIAQGNAAS
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   .........850.........860.........870.........880.........890.........900
Sequence  AKVIVDNADLSANSMSIGEGDTAAVTMTGNGATISSGNTFTVARGNNASATLDYSDSKIN
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   .........910.........920.........930.........940.........950.........960
Sequence  IGNGYIGVGEKSHTLLKLDNSTFHAAGNIDIGKGSSTIANVSVGAGSNMSIKGNASIGVG
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  DQAKAKFSVKDSVLNIGSSLVLGQGNSTEAEMSVEHSQLYSGGLLLGTANNAVVSMSANN
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  SEISVVGDYTVAKGDGSEATLIYKNSDINLGNGILGAGSGVKTDLSLDNSKFVASDGIII
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  GKGDNAITNLSISDHSVFKGERINIGNGSYSKNSISITGNSIFDFGSSQESTIGEGDYSQ
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  SLVTINDASVYGDGSLTLAKGNNSFAVLNLQDNAVTNANNISLATGLGSKAIVNVSNMNS
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  GQFNPVSMGAGDGYAEVNFDGVNGYTLSTNFICMDSGSCADTVINVNRGTVSLSGTNDWK
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  GQINVYDGTRLDARGNDAVDGILNVSKEAQVDFNGYSQHMTGIDNKGMIYLSDGSASSDV
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  YLDKDYVAHDGSGVQFGIFGQKEADVMHVKGDTSGSSGIVVTTNSKNKIKKGGDILLVEV
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   .........1390.........1400.........1410.........1420.........1430.........1440
Sequence  NGDSSGSFYLNSLIKNGKEYKVTGDYIDVGAWEYALNKKRKNWYLSVDMRPEPGAFINNS
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   .........1450.........1460.........1470.........1480.........1490.........1500
Sequence  KSMLDMFALQRYDIPGQHRYPTLFENLYNNGMWIQFNNNSGSNSEVYDNLKTSYSLNTMM
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   .........1510.........1520.........1530.........1540.........1550.........1560
Sequence  IGGDIYNWTDGYNYSHIGIMGGMGSAANKTTSTNNKRATGNVDGYTLGLYHVFQQNISDG
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   .........1570.........1580.........1590.........1600.........1610.........1620
Sequence  LNESERQGLWTYSSIQYMDYDNSVSSTNNFKANYGVNGFRLTGEVGYLKNIGGIQPSDFY
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   .........1630.........1640.........1650.........1660.........1670.........1680
Sequence  VEPKLYLSHTELSGGVVEDLQGGKITYPNSLTIIEPGVFFSYRKTHESTSNDEAMFKDYI
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   .........1690.........1700.........1710.........1720.........1730.........1740
Sequence  KQSVVDAWFGGGYSFKTGNYSRTNFDSDMVEYNTSDNFALKSGVEFEFLKDARLLLTSSY
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   .........1750........
Sequence  SINNDRNLSFILGGNYYF
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3aeh chain B

3D model

Region: 1430 - 1758
Aligned: 262
Modelled: 302
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp

Phyre2

PDB 3slj chain A

3D model

Region: 1432 - 1758
Aligned: 284
Modelled: 327
Confidence: 100.0%
Identity: 18%
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant

Phyre2

PDB 3qq2 chain C

3D model

Region: 1468 - 1758
Aligned: 243
Modelled: 291
Confidence: 100.0%
Identity: 22%
PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka

Phyre2

PDB 2qom chain B

3D model

Region: 1451 - 1758
Aligned: 259
Modelled: 293
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.

Phyre2

PDB 1uyn chain X

3D model

Region: 1451 - 1758
Aligned: 259
Modelled: 282
Confidence: 100.0%
Identity: 15%
Fold: Transmembrane beta-barrels
Superfamily: Autotransporter
Family: Autotransporter

Phyre2

PDB 3kvn chain A

3D model

Region: 1434 - 1758
Aligned: 289
Modelled: 309
Confidence: 100.0%
Identity: 10%
PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa

Phyre2

PDB 1dab chain A

3D model

Region: 904 - 1432
Aligned: 518
Modelled: 529
Confidence: 99.9%
Identity: 12%
Fold: Single-stranded right-handed beta-helix
Superfamily: Pectin lyase-like
Family: Virulence factor P.69 pertactin

Phyre2

PDB 3ml3 chain A

3D model

Region: 1276 - 1429
Aligned: 141
Modelled: 154
Confidence: 99.9%
Identity: 18%
PDB header:protein transport
Chain: A: PDB Molecule:outer membrane protein icsa autotransporter;
PDBTitle: crystal structure of the icsa autochaperone region

Phyre2

PDB 3h09 chain B

3D model

Region: 1186 - 1431
Aligned: 229
Modelled: 246
Confidence: 99.7%
Identity: 16%
PDB header:hydrolase
Chain: B: PDB Molecule:immunoglobulin a1 protease;
PDBTitle: the structure of haemophilus influenzae iga1 protease

Phyre2

PDB 3syj chain A

3D model

Region: 754 - 1431
Aligned: 661
Modelled: 678
Confidence: 99.6%
Identity: 11%
PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion and penetration protein autotransporter;
PDBTitle: crystal structure of the haemophilus influenzae hap adhesin

Phyre2

PDB 3qra chain A

3D model

Region: 1577 - 1758
Aligned: 141
Modelled: 161
Confidence: 98.3%
Identity: 16%
PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis

Phyre2

PDB 2k0l chain A

3D model

Region: 1563 - 1758
Aligned: 166
Modelled: 184
Confidence: 98.2%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.

Phyre2

PDB 1g90 chain A

3D model

Region: 1563 - 1758
Aligned: 161
Modelled: 180
Confidence: 98.2%
Identity: 14%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 1p4t chain A

3D model

Region: 1564 - 1758
Aligned: 148
Modelled: 167
Confidence: 98.1%
Identity: 17%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 1qjp chain A

3D model

Region: 1563 - 1758
Aligned: 136
Modelled: 166
Confidence: 98.0%
Identity: 16%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 3nb3 chain C

3D model

Region: 1563 - 1758
Aligned: 136
Modelled: 152
Confidence: 97.9%
Identity: 15%
PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components

Phyre2

PDB 2jmm chain A

3D model

Region: 1564 - 1758
Aligned: 145
Modelled: 167
Confidence: 97.7%
Identity: 21%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein

Phyre2

PDB 2x27 chain X

3D model

Region: 1597 - 1758
Aligned: 138
Modelled: 144
Confidence: 97.4%
Identity: 18%
PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa

Phyre2

PDB 1qj8 chain A

3D model

Region: 1597 - 1758
Aligned: 130
Modelled: 146
Confidence: 96.8%
Identity: 10%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2lhf chain A

3D model

Region: 1685 - 1758
Aligned: 71
Modelled: 74
Confidence: 96.0%
Identity: 23%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles

Phyre2
1

c3aehB_
2

c3sljA_
3

c3qq2C_
4

c2qomB_
5

d1uynx_
6

c3kvnA_
7

d1daba_
8

c3ml3A_
9

c3h09B_
10

c3syjA_
11

c3qraA_
12

c2k0lA_
13

d1g90a_
14

d1p4ta_
15

d1qjpa_
16

c3nb3C_
17

c2jmmA_
18

c2x27X_
19

d1qj8a_
20

c2lhfA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3aehB_



100.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp
2c3sljA_



100.0 18 PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
3c3qq2C_



100.0 22 PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
4c2qomB_



100.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.
5d1uynx_



100.0 15 Fold:Transmembrane beta-barrels
Superfamily:Autotransporter
Family:Autotransporter
6c3kvnA_



100.0 10 PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa
7d1daba_



99.9 12 Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Virulence factor P.69 pertactin
8c3ml3A_



99.9 18 PDB header:protein transport
Chain: A: PDB Molecule:outer membrane protein icsa autotransporter;
PDBTitle: crystal structure of the icsa autochaperone region
9c3h09B_



99.7 16 PDB header:hydrolase
Chain: B: PDB Molecule:immunoglobulin a1 protease;
PDBTitle: the structure of haemophilus influenzae iga1 protease
10c3syjA_



99.6 11 PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion and penetration protein autotransporter;
PDBTitle: crystal structure of the haemophilus influenzae hap adhesin
11c3qraA_



98.3 16 PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis
12c2k0lA_



98.2 15 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
13d1g90a_



98.2 14 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
14d1p4ta_



98.1 17 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
15d1qjpa_



98.0 16 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
16c3nb3C_



97.9 15 PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
17c2jmmA_



97.7 21 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein
18c2x27X_



97.4 18 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
19d1qj8a_



96.8 10 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
20c2lhfA_



96.0 23 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles
21d2pora_



not modelled 95.7 11 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
22c2wjqA_



not modelled 95.3 11 PDB header:transport protein
Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel
PDBTitle: nanc porin structure in hexagonal crystal form.
23d2zfga1



not modelled 94.9 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
24c3a2rX_



not modelled 94.4 13 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein ii;
PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis
25c2iwvD_



not modelled 93.6 15 PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
26d3prna_



not modelled 93.1 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
27d1osma_



not modelled 92.1 13 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
28d2fgqx1



not modelled 90.6 13 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
29c2f1tB_



not modelled 90.6 14 PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw
30d2vdfa1



not modelled 87.9 14 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane adhesin/invasin OpcA
31c3brzA_



not modelled 83.8 12 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
32d1phoa_



not modelled 81.2 10 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
33c3nsgA_



not modelled 68.5 11 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein f;
PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi
34d1w0pa2



not modelled 38.4 12 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Vibrio cholerae sialidase, N-terminal and insertion domains
35c3ak5B_



not modelled 28.7 12 PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp;
PDBTitle: hemoglobin protease (hbp) passenger missing domain-2
36c3rbhC_



not modelled 26.7 21 PDB header:transport protein
Chain: C: PDB Molecule:alginate production protein alge;
PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa
37d1t16a_



not modelled 26.6 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Outer membrane protein transport protein
38d1pm6a_



not modelled 21.6 0 Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
39c2lfeA_



not modelled 18.0 18 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw2;
PDBTitle: solution nmr structure of n-terminal domain of human e3 ubiquitin-2 protein ligase hecw2, northeast structural genomics consortium (nesg)3 target ht6306a
40c1yo8A_



not modelled 17.8 20 PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin-2;
PDBTitle: structure of the c-terminal domain of human thrombospondin-2
41d1txka2



not modelled 16.1 12 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:MdoG-like
42d2mpra_



not modelled 15.7 14 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Maltoporin-like
43c2x4mD_



not modelled 15.6 14 PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla
44c1txkA_



not modelled 13.4 12 PDB header:biosynthetic protein
Chain: A: PDB Molecule:glucans biosynthesis protein g;
PDBTitle: crystal structure of escherichia coli opgg
45d1tywa_



not modelled 12.9 11 Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:P22 tailspike protein
46d1vpra1



not modelled 12.3 24 Fold:Lipocalins
Superfamily:Lipocalins
Family:Dinoflagellate luciferase repeat
47d2evra2



not modelled 11.6 20 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:NlpC/P60
48c3fbyC_



not modelled 11.2 15 PDB header:cell adhesion
Chain: C: PDB Molecule:cartilage oligomeric matrix protein;
PDBTitle: the crystal structure of the signature domain of cartilage oligomeric2 matrix protein.
49d1upsa2



not modelled 10.9 11 Fold:beta-Trefoil
Superfamily:Ricin B-like lectins
Family:GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain
50c2r5xA_



not modelled 10.7 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of uncharacterized conserved protein yugn from2 geobacillus kaustophilus hta426
51c2xc1A_



not modelled 10.7 11 PDB header:hydrolase
Chain: A: PDB Molecule:bifunctional tail protein;
PDBTitle: full-length tailspike protein mutant y108w of bacteriophage2 p22
52c2fg0B_



not modelled 10.6 20 PDB header:hydrolase
Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion-
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution
53c1q40C_



not modelled 10.3 13 PDB header:translation
Chain: C: PDB Molecule:mrna transport regulator mtr2;
PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex
54d1rh6a_



not modelled 9.5 0 Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
55d2pwwa1



not modelled 9.4 20 Fold:TBP-like
Superfamily:YugN-like
Family:YugN-like
56d3ejva1



not modelled 9.4 23 Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
57c2bvbA_



not modelled 9.1 19 PDB header:adhesion
Chain: A: PDB Molecule:micronemal protein 1;
PDBTitle: the c-terminal domain from micronemal protein 1 (mic1) from2 toxoplasma gondii
58c3emoA_



not modelled 9.0 16 PDB header:membrane protein/cell adhesion
Chain: A: PDB Molecule:hia (adhesin);
PDBTitle: crystal structure of transmembrane hia 973-1098
59c1lj2B_



not modelled 8.8 45 PDB header:viral protein/ translation
Chain: B: PDB Molecule:nonstructural rna-binding protein 34;
PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization
60c3dwoX_



not modelled 8.7 12 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
61c1po3A_



not modelled 8.2 11 PDB header:membrane protein
Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca
PDBTitle: crystal structure of ferric citrate transporter feca in2 complex with ferric citrate
62c2k4tA_



not modelled 7.8 13 PDB header:membrane protein,apoptosis
Chain: A: PDB Molecule:voltage-dependent anion-selective channel
PDBTitle: solution structure of human vdac-1 in ldao micelles
63c2gr7C_



not modelled 7.4 16 PDB header:membrane protein
Chain: C: PDB Molecule:adhesin;
PDBTitle: hia 992-1098
64d2gr7a1



not modelled 7.4 16 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
65c2npiD_



not modelled 7.1 57 PDB header:transcription
Chain: D: PDB Molecule:protein pcf11;
PDBTitle: clp1-atp-pcf11 complex
66d1zrua3



not modelled 6.7 50 Fold:Pseudo beta-prism
Superfamily:Bacteriophage trimeric proteins domain
Family:Lactophage receptor-binding protein N-terminal domain
67c2v5iA_



not modelled 6.4 8 PDB header:viral protein
Chain: A: PDB Molecule:salmonella typhimurium db7155 bacteriophage det7
PDBTitle: structure of the receptor-binding protein of bacteriophage2 det7: a podoviral tailspike in a myovirus
68d1vjpa2



not modelled 6.3 13 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
69c2d4nA_



not modelled 6.2 15 PDB header:hydrolase
Chain: A: PDB Molecule:du;
PDBTitle: crystal structure of m-pmv dutpase complexed with dupnpp, substrate2 analogue
70d2gr8a1



not modelled 6.2 16 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
71d2h1ta1



not modelled 6.0 19 Fold:Spiral beta-roll
Superfamily:PA1994-like
Family:PA1994-like
72c2fhdA_



not modelled 6.0 23 PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9/crb2;
PDBTitle: crystal structure of crb2 tandem tudor domains
73c3cinA_



not modelled 6.0 12 PDB header:isomerase
Chain: A: PDB Molecule:myo-inositol-1-phosphate synthase-related protein;
PDBTitle: crystal structure of a myo-inositol-1-phosphate synthase-related2 protein (tm_1419) from thermotoga maritima msb8 at 1.70 a resolution
74c2k1gA_



not modelled 5.9 35 PDB header:lipoprotein
Chain: A: PDB Molecule:lipoprotein spr;
PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162
75d1jmxa4



not modelled 5.9 39 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5
76d1p1ja2



not modelled 5.9 25 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
77d2h7za1



not modelled 5.9 29 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
78d1k1za_



not modelled 5.8 11 Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
79d1zvca1



not modelled 5.8 15 Fold:AOC barrel-like
Superfamily:Allene oxide cyclase-like
Family:Allene oxide cyclase-like
80c2odlA_



not modelled 5.8 11 PDB header:cell adhesion
Chain: A: PDB Molecule:adhesin;
PDBTitle: crystal structure of the hmw1 secretion domain from2 haemophilus influenzae
81c1w0pA_



not modelled 5.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:sialidase;
PDBTitle: vibrio cholerae sialidase with alpha-2,6-sialyllactose
82c2o18A_



not modelled 5.7 16 PDB header:lipid binding protein
Chain: A: PDB Molecule:thiamine biosynthesis lipoprotein apbe;
PDBTitle: crystal structure of a thiamine biosynthesis lipoprotein2 apbe, northeast strcutural genomics target er559
83c1dfcB_



not modelled 5.6 11 PDB header:structural protein
Chain: B: PDB Molecule:fascin;
PDBTitle: crystal structure of human fascin, an actin-crosslinking protein
84d1gcqc_



not modelled 5.6 10 Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
85d1ylea1



not modelled 5.6 9 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:AstA-like
86d2g03a1



not modelled 5.6 14 Fold:Fic-like
Superfamily:Fic-like
Family:Fic-like
87d1sm3h2



not modelled 5.6 4 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
88c1xkwA_



not modelled 5.4 10 PDB header:membrane protein
Chain: A: PDB Molecule:fe(iii)-pyochelin receptor;
PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa
89d2ihoa2



not modelled 5.3 17 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:MOA C-terminal domain-like
90c3n0kA_



not modelled 5.3 13 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:serine protease inhibitor 1;
PDBTitle: proteinase inhibitor from coprinopsis cinerea

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0