Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A705
DateThu Jan 5 11:04:22 GMT 2012
Unique Job ID8dc23a19c0d68acb

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1zo1I_
Top template information
PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
Confidence and coverage
Confidence:100.0% Coverage: 56%
501 residues ( 56% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
567 residues ( 64%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHLNQKNSGPDKLT
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Disorder  ?????




















?

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   .........70.........80.........90.........100.........110.........120
Sequence  LQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREA
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Disorder  ????????????????????????????????????????????????????????????
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   .........130.........140.........150.........160.........170.........180
Sequence  EESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSNQQDDMTKNAQAEKARREQEA
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Disorder  ????????????????????????????????????????????????????????????
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   .........190.........200.........210.........220.........230.........240
Sequence  AELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSSDYHVTTSQHARQAE
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Disorder  ????????????????????????????????????????????????????????????
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   .........250.........260.........270.........280.........290.........300
Sequence  DESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQ
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Disorder  ????????????????????????????????????????????????????????????
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   .........310.........320.........330.........340.........350.........360
Sequence  KPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEE
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   .........370.........380.........390.........400.........410.........420
Sequence  MGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGE
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   .........430.........440.........450.........460.........470.........480
Sequence  AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTI
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Disorder  ??

























































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   .........490.........500.........510.........520.........530.........540
Sequence  EAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG
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   .........550.........560.........570.........580.........590.........600
Sequence  IDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCG
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??
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   .........610.........620.........630.........640.........650.........660
Sequence  FEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGK
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??
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   .........670.........680.........690.........700.........710.........720
Sequence  FREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKI
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   .........730.........740.........750.........760.........770.........780
Sequence  IGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKA
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   .........790.........800.........810.........820.........830.........840
Sequence  AMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEG
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   .........850.........860.........870.........880.........890
Sequence  ELESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA
Secondary structure 
















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??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1zo1 chain I

3D model

Region: 388 - 888
Aligned: 501
Modelled: 501
Confidence: 100.0%
Identity: 100%
PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex

Phyre2

PDB 3izy chain P

3D model

Region: 388 - 881
Aligned: 494
Modelled: 494
Confidence: 100.0%
Identity: 45%
PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2

Phyre2

PDB 1g7t chain A

3D model

Region: 387 - 889
Aligned: 476
Modelled: 488
Confidence: 100.0%
Identity: 29%
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp

Phyre2

PDB 1wb1 chain C

3D model

Region: 384 - 848
Aligned: 447
Modelled: 465
Confidence: 100.0%
Identity: 20%
PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp

Phyre2

PDB 3izq chain 1

3D model

Region: 319 - 629
Aligned: 308
Modelled: 311
Confidence: 100.0%
Identity: 20%
PDB header:ribosomal protein,hydrolase
Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome

Phyre2

PDB 2ywf chain A

3D model

Region: 394 - 879
Aligned: 418
Modelled: 433
Confidence: 100.0%
Identity: 23%
PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus

Phyre2

PDB 3deg chain C

3D model

Region: 394 - 883
Aligned: 427
Modelled: 429
Confidence: 100.0%
Identity: 25%
PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp

Phyre2

PDB 3agq chain A

3D model

Region: 362 - 646
Aligned: 276
Modelled: 285
Confidence: 100.0%
Identity: 26%
PDB header:translation,transferase
Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q
PDBTitle: structure of viral polymerase form ii

Phyre2

PDB 3mmp chain C

3D model

Region: 394 - 629
Aligned: 227
Modelled: 236
Confidence: 100.0%
Identity: 30%
PDB header:transferase
Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts;
PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins

Phyre2

PDB 3cb4 chain D

3D model

Region: 394 - 646
Aligned: 235
Modelled: 253
Confidence: 100.0%
Identity: 29%
PDB header:translation
Chain: D: PDB Molecule:gtp-binding protein lepa;
PDBTitle: the crystal structure of lepa

Phyre2

PDB 2xex chain A

3D model

Region: 394 - 646
Aligned: 245
Modelled: 253
Confidence: 100.0%
Identity: 28%
PDB header:translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g

Phyre2

PDB 2bm0 chain A

3D model

Region: 394 - 720
Aligned: 296
Modelled: 297
Confidence: 100.0%
Identity: 24%
PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a

Phyre2

PDB 2dy1 chain A

3D model

Region: 394 - 642
Aligned: 247
Modelled: 249
Confidence: 100.0%
Identity: 26%
PDB header:signaling protein, translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of ef-g-2 from thermus thermophilus

Phyre2

PDB 1d2e chain A

3D model

Region: 390 - 629
Aligned: 238
Modelled: 240
Confidence: 100.0%
Identity: 29%
PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp

Phyre2

PDB 1zun chain B

3D model

Region: 394 - 646
Aligned: 252
Modelled: 253
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylate transferase, subunit
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae

Phyre2

PDB 1zn0 chain B

3D model

Region: 394 - 720
Aligned: 288
Modelled: 288
Confidence: 100.0%
Identity: 25%
PDB header:translation/biosynthetic protein/rna
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf

Phyre2

PDB 1g7c chain A

3D model

Region: 394 - 628
Aligned: 234
Modelled: 235
Confidence: 100.0%
Identity: 24%
PDB header:translation
Chain: A: PDB Molecule:elongation factor 1-alpha;
PDBTitle: yeast eef1a:eef1ba in complex with gdpnp

Phyre2

PDB 3tr5 chain C

3D model

Region: 394 - 646
Aligned: 252
Modelled: 253
Confidence: 100.0%
Identity: 27%
PDB header:translation
Chain: C: PDB Molecule:peptide chain release factor 3;
PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii

Phyre2

PDB 1mj1 chain A

3D model

Region: 388 - 629
Aligned: 239
Modelled: 242
Confidence: 100.0%
Identity: 31%
PDB header:ribosome
Chain: A: PDB Molecule:elongation factor tu;
PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome

Phyre2

PDB 2bvn chain B

3D model

Region: 388 - 629
Aligned: 239
Modelled: 242
Confidence: 100.0%
Identity: 28%
PDB header:elongation factor
Chain: B: PDB Molecule:elongation factor tu;
PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia

Phyre2
1

c1zo1I_
2

c3izyP_
3

c1g7tA_
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c1wb1C_
5

c3izq1_
6

c2ywfA_
7

c3degC_
8

c3agqA_
9

c3mmpC_
10

c3cb4D_
11

c2xexA_
12

c2bm0A_
13

c2dy1A_
14

c1d2eA_
15

c1zunB_
16

c1zn0B_
17

c1g7cA_
18

c3tr5C_
19

c1mj1A_
20

c2bvnB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1zo1I_



100.0 100 PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
2c3izyP_



100.0 45 PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2
3c1g7tA_



100.0 29 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
4c1wb1C_



100.0 20 PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
5c3izq1_



100.0 20 PDB header:ribosomal protein,hydrolase
Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome
6c2ywfA_



100.0 23 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
7c3degC_



100.0 25 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
8c3agqA_



100.0 26 PDB header:translation,transferase
Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q
PDBTitle: structure of viral polymerase form ii
9c3mmpC_



100.0 30 PDB header:transferase
Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts;
PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
10c3cb4D_



100.0 29 PDB header:translation
Chain: D: PDB Molecule:gtp-binding protein lepa;
PDBTitle: the crystal structure of lepa
11c2xexA_



100.0 28 PDB header:translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
12c2bm0A_



100.0 24 PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
13c2dy1A_



100.0 26 PDB header:signaling protein, translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of ef-g-2 from thermus thermophilus
14c1d2eA_



100.0 29 PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
15c1zunB_



100.0 23 PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylate transferase, subunit
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae
16c1zn0B_



100.0 25 PDB header:translation/biosynthetic protein/rna
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf
17c1g7cA_



100.0 24 PDB header:translation
Chain: A: PDB Molecule:elongation factor 1-alpha;
PDBTitle: yeast eef1a:eef1ba in complex with gdpnp
18c3tr5C_



100.0 27 PDB header:translation
Chain: C: PDB Molecule:peptide chain release factor 3;
PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
19c1mj1A_



100.0 31 PDB header:ribosome
Chain: A: PDB Molecule:elongation factor tu;
PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome
20c2bvnB_



100.0 28 PDB header:elongation factor
Chain: B: PDB Molecule:elongation factor tu;
PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia
21c3mcaA_



not modelled 100.0 24 PDB header:translation regulation/hydrolase
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay
22c2elfA_



not modelled 100.0 19 PDB header:translation
Chain: A: PDB Molecule:protein translation elongation factor 1a;
PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei
23c1skqB_



not modelled 100.0 26 PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-alpha;
PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp
24c3p27A_



not modelled 100.0 20 PDB header:signaling protein
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: crystal structure of a translational gtpase (gdp form)
25c2rdo7_



not modelled 100.0 28 PDB header:ribosome
Chain: 7: PDB Molecule:elongation factor g;
PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound
26c1kk3A_



not modelled 100.0 31 PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+
27c2h5eB_



not modelled 100.0 25 PDB header:translation
Chain: B: PDB Molecule:peptide chain release factor rf-3;
PDBTitle: crystal structure of e.coli polypeptide release factor rf3
28c3b8hA_



not modelled 100.0 27 PDB header:biosynthetic protein/transferase
Chain: A: PDB Molecule:elongation factor 2;
PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex
29c2plfA_



not modelled 100.0 26 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
30c1r5nA_



not modelled 100.0 24 PDB header:translation
Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp-
PDBTitle: crystal structure analysis of sup35 complexed with gdp
31c1s0uA_



not modelled 100.0 24 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: eif2gamma apo
32c2hdnJ_



not modelled 99.9 28 PDB header:translation
Chain: J: PDB Molecule:elongation factor ef-tu;
PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution
33d1d1na_



not modelled 99.9 49 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
34c2crvA_



not modelled 99.9 28 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-2;
PDBTitle: solution structure of c-terminal domain of mitochondrial2 translational initiationfactor 2
35c1z9bA_



not modelled 99.9 43 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-2;
PDBTitle: solution structure of the c1-subdomain of bacillus2 stearothermophilus translation initiation factor if2
36d1g7sa3



not modelled 99.9 24 Fold:Initiation factor IF2/eIF5b, domain 3
Superfamily:Initiation factor IF2/eIF5b, domain 3
Family:Initiation factor IF2/eIF5b, domain 3
37c2e87A_



not modelled 99.8 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
38d1f60a3



not modelled 99.8 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
39d2bv3a2



not modelled 99.8 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
40d1n0ua2



not modelled 99.8 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
41d2dy1a2



not modelled 99.8 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
42d1zunb3



not modelled 99.8 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
43c1mkyA_



not modelled 99.8 23 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
44d1yrba1



not modelled 99.7 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
45c2qthA_



not modelled 99.7 27 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
46d1g7sa4



not modelled 99.7 41 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
47c3ievA_



not modelled 99.7 27 PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
48c2hjgA_



not modelled 99.7 27 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
49d1jnya3



not modelled 99.7 36 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
50c1egaB_



not modelled 99.6 18 PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
51d1wb1a4



not modelled 99.6 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
52d1d2ea3



not modelled 99.6 36 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
53c1wf3A_



not modelled 99.6 22 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
54d2c78a3



not modelled 99.6 32 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
55c3k53B_



not modelled 99.6 20 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus
56c1xzqA_



not modelled 99.6 21 PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
57d1r5ba3



not modelled 99.6 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
58c3gehA_



not modelled 99.6 28 PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
59c3qq5A_



not modelled 99.5 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:small gtp-binding protein;
PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf
60c2wsmB_



not modelled 99.5 18 PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus
61c3a1vB_



not modelled 99.5 21 PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form
62c3md0A_



not modelled 99.5 23 PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)
63d1g7sa1



not modelled 99.5 26 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
64d1kk1a3



not modelled 99.5 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
65d1svia_



not modelled 99.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
66d1efca3



not modelled 99.5 32 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
67d2qn6a3



not modelled 99.5 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
68c2gedB_



not modelled 99.5 19 PDB header:protein transport, signaling protein
Chain: B: PDB Molecule:signal recognition particle receptor beta
PDBTitle: signal recognition particle receptor beta-subunit in2 nucleotide-free dimerized form
69c1lnzA_



not modelled 99.5 21 PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein
70c3lvrE_



not modelled 99.5 20 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
71c3ibyA_



not modelled 99.4 20 PDB header:transport protein
Chain: A: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of cytosolic domain of l. pneumophila feob
72c3i8sC_



not modelled 99.4 24 PDB header:transport protein
Chain: C: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of the cytosolic domain of e. coli feob, nucleotide-free2 form
73c3pqcA_



not modelled 99.4 22 PDB header:hydrolase
Chain: A: PDB Molecule:probable gtp-binding protein engb;
PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp
74c3lx8A_



not modelled 99.4 23 PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus
75c3nxsA_



not modelled 99.4 24 PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
76d1s0ua3



not modelled 99.4 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
77d1egaa1



not modelled 99.4 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
78c1udxA_



not modelled 99.4 23 PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8
79d2fh5b1



not modelled 99.4 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
80d1puia_



not modelled 99.4 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
81d1nrjb_



not modelled 99.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
82c2hf9A_



not modelled 99.4 19 PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:probable hydrogenase nickel incorporation
PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form
83c3t1tC_



not modelled 99.4 21 PDB header:hydrolase
Chain: C: PDB Molecule:gliding protein mgla;
PDBTitle: mgla bound to gdp in p1 tetrameric arrangement
84c2wjjB_



not modelled 99.3 18 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b homolog;
PDBTitle: structure and function of the feob g-domain from2 methanococcus jannaschii
85c3c5hA_



not modelled 99.3 16 PDB header:signaling protein
Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1;
PDBTitle: crystal structure of the ras homolog domain of human grlf12 (p190rhogap)
86c3a1wA_



not modelled 99.3 22 PDB header:transport protein
Chain: A: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the g domain of t. maritima feob iron2 iransporter
87c2qptA_



not modelled 99.3 27 PDB header:endocytosis
Chain: A: PDB Molecule:eh domain-containing protein-2;
PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling
88d1wf3a1



not modelled 99.3 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
89c2qagC_



not modelled 99.3 19 PDB header:cell cycle, structural protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of human septin trimer 2/6/7
90c2wwwB_



not modelled 99.3 21 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
91c2qu8A_



not modelled 99.3 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nucleolar gtp-binding protein 1;
PDBTitle: crystal structure of putative nucleolar gtp-binding protein 1 pff0625w2 from plasmodium falciparum
92c2wkqA_



not modelled 99.2 15 PDB header:transferase, cell adhesion
Chain: A: PDB Molecule:nph1-1, ras-related c3 botulinum toxin substrate
PDBTitle: structure of a photoactivatable rac1 containing the lov22 c450a mutant
93d2cxxa1



not modelled 99.2 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
94c2dykB_



not modelled 99.2 25 PDB header:ribosome
Chain: B: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of n-terminal gtp-binding domain of enga from2 thermus thermophilus hb8
95d2p67a1



not modelled 99.2 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
96d2qm8a1



not modelled 99.2 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
97c3r7wC_



not modelled 99.2 19 PDB header:protein transport
Chain: C: PDB Molecule:gtp-binding protein gtr1;
PDBTitle: crystal structure of gtr1p-gtr2p complex
98d1tq4a_



not modelled 99.2 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
99d1mkya2



not modelled 99.2 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
100c3o47A_



not modelled 99.2 23 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
101d1fzqa_



not modelled 99.2 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
102d1z2ca1



not modelled 99.2 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
103d1udxa2



not modelled 99.2 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
104c1gwnA_



not modelled 99.2 13 PDB header:gtpase
Chain: A: PDB Molecule:rho-related gtp-binding protein rhoe;
PDBTitle: the crystal structure of the core domain of rhoe/rnd3 - a2 constitutively activated small g protein
105d1m7ba_



not modelled 99.2 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
106d1lnza2



not modelled 99.1 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
107d1xzpa2



not modelled 99.1 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
108d2gj8a1



not modelled 99.1 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
109c2rexD_



not modelled 99.1 14 PDB header:signaling protein/lipoprotein
Chain: D: PDB Molecule:rho-related gtp-binding protein rho6;
PDBTitle: crystal structure of the effector domain of plxnb1 bound with rnd12 gtpase
110d2ngra_



not modelled 99.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
111d2al7a1



not modelled 99.1 25 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
112d2qtvb1



not modelled 99.1 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
113c2xtpA_



not modelled 99.1 15 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of nucleotide-free human gimap2, amino2 acid residues 1-260
114c2xtnA_



not modelled 99.1 15 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of gtp-bound human gimap2, amino acid2 residues 1-234
115d1zcaa2



not modelled 99.1 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
116d1kmqa_



not modelled 99.1 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
117c2h18A_



not modelled 99.1 24 PDB header:transport protein
Chain: A: PDB Molecule:adp-ribosylation factor-like protein 8a;
PDBTitle: structure of human adp-ribosylation factor-like 10b (arl10b)
118c1m2oD_



not modelled 99.1 22 PDB header:protein transport/signaling protein
Chain: D: PDB Molecule:gtp-binding protein sar1;
PDBTitle: crystal structure of the sec23-sar1 complex
119d1yzga1



not modelled 99.1 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
120c2q3fB_



not modelled 99.0 18 PDB header:protein binding
Chain: B: PDB Molecule:ras-related gtp-binding protein d;
PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0