Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	T	Y	Y	S	N	D	F	R	A	G	L	K	I	M	L	D	G	E	P	Y	A	V	E	A	S	E	F	V	K	P	G	K	G	Q	A	F	A	R	V	K	L	R	R	L	L	T	G	T	R	V	E	K	T	F	K	S	T	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?				?																						?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	A	E	G	A	D	V	V	D	M	N	L	T	Y	L	Y	N	D	G	E	F	W	H	F	M	N	N	E	T	F	E	Q	L	S	A	D	A	K	A	I	G	D	N	A	K	W	L	L	D	Q	A	E	C	I	V	T	L	W	N	G
Secondary structure
SS confidence
Disorder																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	P	I	S	V	T	P	P	N	F	V	E	L	E	I	V	D	T	D	P	G	L	K	G	D	T	A	G	T	G	G	K	P	A	T	L	S	T	G	A	V	V	K	V	P	L	F	V	Q	I	G	E	V	I	K	V	D	T	R	S
Secondary structure
SS confidence
Disorder																										?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		G	E	Y	V	S	R	V	K
Secondary structure
SS confidence
Disorder			?		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3oyy chain A Region: 1 - 187 Aligned: 184 Modelled: 187 Confidence: 100.0% Identity: 35% PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of pseudomonas aeruginosa elongation factor p Phyre2 PDB 1ueb chain B Region: 4 - 187 Aligned: 177 Modelled: 184 Confidence: 100.0% Identity: 46% PDB header:rna binding protein Chain: B: PDB Molecule:elongation factor p; PDBTitle: crystal structure of translation elongation factor p from2 thermus thermophilus hb8 Phyre2 PDB 1yby chain B Region: 4 - 187 Aligned: 177 Modelled: 184 Confidence: 100.0% Identity: 45% PDB header:translation Chain: B: PDB Molecule:translation elongation factor p; PDBTitle: conserved hypothetical protein cth-95 from clostridium2 thermocellum Phyre2 PDB 3tre chain A Region: 3 - 131 Aligned: 129 Modelled: 129 Confidence: 100.0% Identity: 54% PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of a translation elongation factor p (efp) from coxiella2 burnetii Phyre2 PDB 1iz6 chain B Region: 3 - 128 Aligned: 126 Modelled: 126 Confidence: 100.0% Identity: 15% PDB header:biosynthetic protein Chain: B: PDB Molecule:initiation factor 5a; PDBTitle: crystal structure of translation initiation factor 5a from pyrococcus2 horikoshii Phyre2 PDB 1bkb chain A Region: 4 - 127 Aligned: 124 Modelled: 124 Confidence: 100.0% Identity: 20% PDB header:translation Chain: A: PDB Molecule:translation initiation factor 5a; PDBTitle: initiation factor 5a from archebacterium pyrobaculum2 aerophilum Phyre2 PDB 2eif chain A Region: 3 - 127 Aligned: 122 Modelled: 125 Confidence: 100.0% Identity: 22% PDB header:gene regulation Chain: A: PDB Molecule:protein (eukaryotic translation initiation factor 5a); PDBTitle: eukaryotic translation initiation factor 5a from methanococcus2 jannaschii Phyre2 PDB 3hks chain B Region: 4 - 126 Aligned: 123 Modelled: 123 Confidence: 100.0% Identity: 15% PDB header:translation, rna binding protein Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of eukaryotic translation initiation2 factor eif-5a2 from arabidopsis thaliana Phyre2 PDB 3er0 chain A Region: 3 - 130 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 20% PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of the full length eif5a from2 saccharomyces cerevisiae Phyre2 PDB 1xtd chain A Region: 4 - 118 Aligned: 115 Modelled: 114 Confidence: 99.9% Identity: 22% PDB header:translation Chain: A: PDB Molecule:eukaryotic initiation factor 5a; PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a Phyre2 PDB 3cpf chain B Region: 4 - 126 Aligned: 113 Modelled: 123 Confidence: 99.9% Identity: 14% PDB header:cell cycle Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-1; PDBTitle: crystal structure of human eukaryotic translation initiation factor2 eif5a Phyre2 PDB 1ueb chain A domain 3 Region: 131 - 187 Aligned: 57 Modelled: 57 Confidence: 99.9% Identity: 72% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1ueb chain A domain 2 Region: 67 - 129 Aligned: 62 Modelled: 63 Confidence: 99.8% Identity: 35% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1ueb chain A domain 1 Region: 4 - 65 Aligned: 62 Modelled: 62 Confidence: 99.8% Identity: 32% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: eIF5a N-terminal domain-like Phyre2 PDB 3a5z chain F Region: 3 - 61 Aligned: 59 Modelled: 59 Confidence: 99.8% Identity: 100% PDB header:ligase Chain: F: PDB Molecule:elongation factor p; PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p Phyre2 PDB 1khi chain A Region: 4 - 127 Aligned: 119 Modelled: 124 Confidence: 99.3% Identity: 17% PDB header:structural protein Chain: A: PDB Molecule:hex1; PDBTitle: crystal structure of hex1 Phyre2 PDB 1iz6 chain A domain 1 Region: 3 - 66 Aligned: 64 Modelled: 64 Confidence: 99.1% Identity: 20% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: eIF5a N-terminal domain-like Phyre2 PDB 1bkb chain A domain 1 Region: 4 - 65 Aligned: 62 Modelled: 62 Confidence: 99.1% Identity: 26% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: eIF5a N-terminal domain-like Phyre2 PDB 2eif chain A domain 1 Region: 4 - 66 Aligned: 63 Modelled: 63 Confidence: 99.1% Identity: 25% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: eIF5a N-terminal domain-like Phyre2 PDB 1x6o chain A domain 1 Region: 4 - 66 Aligned: 60 Modelled: 63 Confidence: 98.7% Identity: 22% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: eIF5a N-terminal domain-like Phyre2 1 c3oyyA_ 2 c1uebB_ 3 c1ybyB_ 4 c3treA_ 5 c1iz6B_ 6 c1bkbA_ 7 c2eifA_ 8 c3hksB_ 9 c3er0A_ 10 c1xtdA_ 11 c3cpfB_ 12 d1ueba3 13 d1ueba2 14 d1ueba1 15 c3a5zF_ 16 c1khiA_ 17 d1iz6a1 18 d1bkba1 19 d2eifa1 20 d1x6oa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3oyyA_ 100.0 35 PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of pseudomonas aeruginosa elongation factor p 2 c1uebB_ 100.0 46 PDB header:rna binding protein Chain: B: PDB Molecule:elongation factor p; PDBTitle: crystal structure of translation elongation factor p from2 thermus thermophilus hb8 3 c1ybyB_ 100.0 45 PDB header:translation Chain: B: PDB Molecule:translation elongation factor p; PDBTitle: conserved hypothetical protein cth-95 from clostridium2 thermocellum 4 c3treA_ 100.0 54 PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of a translation elongation factor p (efp) from coxiella2 burnetii 5 c1iz6B_ 100.0 15 PDB header:biosynthetic protein Chain: B: PDB Molecule:initiation factor 5a; PDBTitle: crystal structure of translation initiation factor 5a from pyrococcus2 horikoshii 6 c1bkbA_ 100.0 20 PDB header:translation Chain: A: PDB Molecule:translation initiation factor 5a; PDBTitle: initiation factor 5a from archebacterium pyrobaculum2 aerophilum 7 c2eifA_ 100.0 22 PDB header:gene regulation Chain: A: PDB Molecule:protein (eukaryotic translation initiation factor 5a); PDBTitle: eukaryotic translation initiation factor 5a from methanococcus2 jannaschii 8 c3hksB_ 100.0 15 PDB header:translation, rna binding protein Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of eukaryotic translation initiation2 factor eif-5a2 from arabidopsis thaliana 9 c3er0A_ 100.0 20 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of the full length eif5a from2 saccharomyces cerevisiae 10 c1xtdA_ 99.9 22 PDB header:translation Chain: A: PDB Molecule:eukaryotic initiation factor 5a; PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a 11 c3cpfB_ 99.9 14 PDB header:cell cycle Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-1; PDBTitle: crystal structure of human eukaryotic translation initiation factor2 eif5a 12 d1ueba3 99.9 72 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 13 d1ueba2 99.8 35 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 14 d1ueba1 99.8 32 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 15 c3a5zF_ 99.8 100 PDB header:ligase Chain: F: PDB Molecule:elongation factor p; PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p 16 c1khiA_ 99.3 17 PDB header:structural protein Chain: A: PDB Molecule:hex1; PDBTitle: crystal structure of hex1 17 d1iz6a1 99.1 20 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 18 d1bkba1 99.1 26 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 19 d2eifa1 99.1 25 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 20 d1x6oa1 98.7 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 21 d1khia1 not modelled 98.0 19 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like 22 d1bkba2 not modelled 97.7 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 23 d1iz6a2 not modelled 97.6 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 24 d2eifa2 not modelled 97.3 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 25 c3fp9E_ not modelled 52.4 33 PDB header:hydrolase Chain: E: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis 26 d1eu1a1 not modelled 51.1 24 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 27 d1vlfm1 not modelled 51.0 14 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 28 d1ogya1 not modelled 50.4 29 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 29 d1dmra1 not modelled 50.0 29 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 30 d1g8ka1 not modelled 49.1 24 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 31 d2iv2x1 not modelled 49.0 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 32 d1kqfa1 not modelled 45.6 14 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 33 c2z14A_ not modelled 45.6 16 PDB header:signaling protein Chain: A: PDB Molecule:ef-hand domain-containing family member c2; PDBTitle: crystal structure of the n-terminal duf1126 in human ef-2 hand domain containing 2 protein 34 d1pmpa_ not modelled 45.3 9 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 35 d1mdca_ not modelled 43.9 14 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 36 d1bwya_ not modelled 43.5 14 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 37 d1y5ia1 not modelled 42.8 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 38 d1tmoa1 not modelled 41.7 14 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 39 d2jioa1 not modelled 41.5 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 40 c2ki8A_ not modelled 40.6 43 PDB header:oxidoreductase Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase, PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7 41 c1tmoA_ not modelled 39.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia 42 d1ftpa_ not modelled 39.8 12 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 43 c2kcmA_ not modelled 38.8 11 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:cold shock domain family protein; PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a. 44 d1h0ha1 not modelled 37.1 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 45 c1h5nC_ not modelled 36.8 29 PDB header:oxidoreductase Chain: C: PDB Molecule:dmso reductase; PDBTitle: dmso reductase modified by the presence of dms and air 46 d1slqa_ not modelled 35.5 14 Fold:VP4 membrane interaction domain Superfamily:VP4 membrane interaction domain Family:VP4 membrane interaction domain 47 d1yiva1 not modelled 35.1 10 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 48 d1hmsa_ not modelled 33.4 14 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 49 c3iyuY_ not modelled 32.4 14 PDB header:virus Chain: Y: PDB Molecule:outer capsid protein vp4; PDBTitle: atomic model of an infectious rotavirus particle 50 c1h0hA_ not modelled 31.7 10 PDB header:dehydrogenase Chain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas 51 d2cqaa1 not modelled 31.2 39 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 52 c2kxjA_ not modelled 31.0 25 PDB header:protein binding Chain: A: PDB Molecule:ubx domain-containing protein 4; PDBTitle: solution structure of ubx domain of human ubxd2 protein 53 c1eu1A_ not modelled 31.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments. 54 d2cr5a1 not modelled 29.6 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 55 c2ivfA_ not modelled 29.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 56 c1g8jC_ not modelled 27.9 24 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 57 c1vlfQ_ not modelled 26.4 14 PDB header:oxidoreductase Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici complexed3 with inhibitor 1,2,4,5-tetrahydroxy-benzene 58 d2pu9b1 not modelled 25.4 42 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain 59 d1b56a_ not modelled 25.1 5 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 60 c1kqgA_ not modelled 24.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit; PDBTitle: formate dehydrogenase n from e. coli 61 d2hnxa1 not modelled 24.3 12 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 62 c1y5iA_ not modelled 24.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain; PDBTitle: the crystal structure of the narghi mutant nari-k86a 63 d2gp4a1 not modelled 23.6 50 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:IlvD/EDD C-terminal domain-like 64 c3hslX_ not modelled 23.6 14 PDB header:replication Chain: X: PDB Molecule:orf59; PDBTitle: the crystal structure of pf-8, the dna polymerase accessory subunit2 from kaposi's sarcoma-associated herpesvirus 65 c1ogyA_ not modelled 22.4 29 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides 66 d1sa8a_ not modelled 22.0 9 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 67 c3m9bK_ not modelled 21.7 30 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 68 c2iv2X_ not modelled 21.6 19 PDB header:oxidoreductase Chain: X: PDB Molecule:formate dehydrogenase h; PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli 69 d1q42a_ not modelled 21.1 19 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 70 d1ifca_ not modelled 20.7 9 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 71 d1i42a_ not modelled 19.7 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 72 d1ed7a_ not modelled 19.0 21 Fold:WW domain-like Superfamily:Carbohydrate binding domain Family:Carbohydrate binding domain 73 c2v45A_ not modelled 18.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand 74 d1g7na_ not modelled 17.8 15 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 75 d2es2a1 not modelled 17.5 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 76 c2nyaF_ not modelled 16.4 38 PDB header:oxidoreductase Chain: F: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli 77 c2wkdA_ not modelled 16.4 38 PDB header:dna binding protein Chain: A: PDB Molecule:orf34p2; PDBTitle: crystal structure of a double ile-to-met mutant of protein2 orf34 from lactococcus phage p2 78 c2e7zA_ not modelled 16.2 33 PDB header:lyase Chain: A: PDB Molecule:acetylene hydratase ahy; PDBTitle: acetylene hydratase from pelobacter acetylenicus 79 d1go3e2 not modelled 16.0 31 Fold:Dodecin subunit-like Superfamily:N-terminal, heterodimerisation domain of RBP7 (RpoE) Family:N-terminal, heterodimerisation domain of RBP7 (RpoE) 80 d1hfua1 not modelled 15.3 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 81 c2ey4A_ not modelled 15.0 29 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 82 d2as0a1 not modelled 15.0 28 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD) 83 d1p6pa_ not modelled 15.0 5 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 84 d2f9ha1 not modelled 14.8 10 Fold:PTSIIA/GutA-like Superfamily:PTSIIA/GutA-like Family:PTSIIA/GutA-like 85 d2ftba1 not modelled 14.2 8 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 86 d2cu8a2 not modelled 14.1 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 87 c1q40C_ not modelled 13.8 16 PDB header:translation Chain: C: PDB Molecule:mrna transport regulator mtr2; PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex 88 d1cyoa_ not modelled 13.6 15 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Cytochrome b5 89 c2vq5B_ not modelled 13.5 19 PDB header:lyase Chain: B: PDB Molecule:s-norcoclaurine synthase; PDBTitle: x-ray structure of norcoclaurine synthase from thalictrum2 flavum in complex with dopamine and hydroxybenzaldehyde 90 d1euea_ not modelled 13.3 18 Fold:Cytochrome b5-like heme/steroid binding domain Superfamily:Cytochrome b5-like heme/steroid binding domain Family:Cytochrome b5 91 d1jt8a_ not modelled 12.9 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 92 c2gp4A_ not modelled 12.6 50 PDB header:lyase Chain: A: PDB Molecule:6-phosphogluconate dehydratase; PDBTitle: structure of [fes]cluster-free apo form of 6-phosphogluconate2 dehydratase from shewanella oneidensis 93 d1kv7a2 not modelled 12.5 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 94 d1x3ha2 not modelled 12.5 43 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 95 d1uhta_ not modelled 12.3 13 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 96 d2piea1 not modelled 12.2 9 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 97 d1kqwa_ not modelled 12.2 14 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 98 d1k0ha_ not modelled 12.1 26 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:gpFII-like 99 d1fdqa_ not modelled 12.0 15 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0