Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	F	I	K	T	F	S	G	K	H	F	Y	Y	D	K	I	N	K	D	D	I	V	I	N	D	I	A	V	S	L	S	N	I	C	R	F	A	G	H	L	S	H	F	Y	S	V	A	Q	H	A	V	L	C	S	Q	L	V	P	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	F	A	F	E	A	L	M	H	D	A	T	E	A	Y	C	Q	D	I	P	A	P	L	K	R	L	L	P	D	Y	K	R	M	E	E	K	I	D	A	V	I	R	E	K	Y	G	L	P	P	V	M	S	T	P	V	K	Y	A	D	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Sequence		I	M	L	A	T	E	R	R	D	L	G	L	D	D	G	S	F	W	P	V	L	E	G	I	P	A	T	E	M	F	N	V	I	P	L	A	P	G	H	A	Y	G	M	F	M	E	R	F	N	D	L	S	E	L	R	K	C	A
Secondary structure
SS confidence
Disorder																												?	?	?	?	?	?	?	?	?																		?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gz4 chain A domain 1 Region: 2 - 175 Aligned: 174 Modelled: 174 Confidence: 100.0% Identity: 29% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 3mzo chain A Region: 28 - 127 Aligned: 100 Modelled: 100 Confidence: 99.4% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:lin2634 protein; PDBTitle: crystal structure of a hd-domain phosphohydrolase (lin2634) from2 listeria innocua at 1.98 a resolution Phyre2 PDB 2paq chain A domain 1 Region: 26 - 128 Aligned: 103 Modelled: 103 Confidence: 99.2% Identity: 18% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 2cqz chain A Region: 22 - 128 Aligned: 107 Modelled: 107 Confidence: 98.8% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:177aa long hypothetical protein; PDBTitle: crystal structure of ph0347 protein from pyrococcus horikoshii ot3 Phyre2 PDB 1xx7 chain A Region: 22 - 129 Aligned: 108 Modelled: 108 Confidence: 98.8% Identity: 25% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 1ynb chain A domain 1 Region: 22 - 129 Aligned: 108 Modelled: 108 Confidence: 98.2% Identity: 21% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 3kh1 chain B Region: 31 - 123 Aligned: 93 Modelled: 93 Confidence: 98.1% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:predicted metal-dependent phosphohydrolase; PDBTitle: crystal structure of predicted metal-dependent2 phosphohydrolase (zp_00055740.2) from magnetospirillum3 magnetotacticum ms-1 at 1.37 a resolution Phyre2 PDB 3b57 chain A domain 1 Region: 49 - 121 Aligned: 72 Modelled: 73 Confidence: 80.3% Identity: 17% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 2ogi chain A Region: 49 - 70 Aligned: 22 Modelled: 22 Confidence: 76.2% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein sag1661; PDBTitle: crystal structure of a putative metal dependent phosphohydrolase2 (sag1661) from streptococcus agalactiae serogroup v at 1.85 a3 resolution Phyre2 PDB 2pgs chain A Region: 1 - 70 Aligned: 63 Modelled: 70 Confidence: 73.1% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:putative deoxyguanosinetriphosphate triphosphohydrolase; PDBTitle: crystal structure of a putative deoxyguanosinetriphosphate2 triphosphohydrolase from pseudomonas syringae pv. phaseolicola 1448a Phyre2 PDB 2o08 chain B Region: 49 - 70 Aligned: 22 Modelled: 22 Confidence: 71.2% Identity: 27% PDB header:hydrolase Chain: B: PDB Molecule:bh1327 protein; PDBTitle: crystal structure of a putative hd superfamily hydrolase (bh1327) from2 bacillus halodurans at 1.90 a resolution Phyre2 PDB 3ccg chain A Region: 49 - 70 Aligned: 22 Modelled: 22 Confidence: 70.6% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:hd superfamily hydrolase; PDBTitle: crystal structure of predicted hd superfamily hydrolase involved in2 nad metabolism (np_347894.1) from clostridium acetobutylicum at 1.503 a resolution Phyre2 PDB 2pq7 chain A domain 1 Region: 19 - 118 Aligned: 93 Modelled: 100 Confidence: 70.2% Identity: 17% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 3nr1 chain A Region: 23 - 73 Aligned: 51 Modelled: 51 Confidence: 65.8% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:hd domain-containing protein 3; PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses Phyre2 PDB 1vj7 chain B Region: 21 - 121 Aligned: 97 Modelled: 101 Confidence: 58.9% Identity: 13% PDB header:hydrolase, transferase Chain: B: PDB Molecule:bifunctional rela/spot; PDBTitle: crystal structure of the bifunctional catalytic fragment of relseq,2 the rela/spot homolog from streptococcus equisimilis. Phyre2 PDB 2dqb chain B Region: 49 - 70 Aligned: 22 Modelled: 22 Confidence: 49.5% Identity: 36% PDB header:hydrolase, dna binding protein Chain: B: PDB Molecule:deoxyguanosinetriphosphate triphosphohydrolase, putative; PDBTitle: crystal structure of dntp triphosphohydrolase from thermus2 thermophilus hb8, which is homologous to dgtp triphosphohydrolase Phyre2 PDB 3m1t chain A Region: 24 - 108 Aligned: 85 Modelled: 85 Confidence: 48.6% Identity: 9% PDB header:hydrolase Chain: A: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of putative phosphohydrolase (yp_929327.1) from2 shewanella amazonensis sb2b at 1.62 a resolution Phyre2 PDB 2hek chain A domain 1 Region: 49 - 70 Aligned: 22 Modelled: 22 Confidence: 47.5% Identity: 23% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 2pjq chain A domain 1 Region: 49 - 121 Aligned: 68 Modelled: 73 Confidence: 45.6% Identity: 25% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 3nqw chain B Region: 38 - 138 Aligned: 98 Modelled: 101 Confidence: 42.4% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:cg11900; PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses Phyre2 1 d2gz4a1 2 c3mzoA_ 3 d2paqa1 4 c2cqzA_ 5 d1xx7a_ 6 d1ynba1 7 c3kh1B_ 8 d3b57a1 9 c2ogiA_ 10 c2pgsA_ 11 c2o08B_ 12 c3ccgA_ 13 d2pq7a1 14 c3nr1A_ 15 c1vj7B_ 16 c2dqbB_ 17 c3m1tA_ 18 d2heka1 19 d2pjqa1 20 c3nqwB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2gz4a1 100.0 29 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 2 c3mzoA_ 99.4 23 PDB header:hydrolase Chain: A: PDB Molecule:lin2634 protein; PDBTitle: crystal structure of a hd-domain phosphohydrolase (lin2634) from2 listeria innocua at 1.98 a resolution 3 d2paqa1 99.2 18 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 4 c2cqzA_ 98.8 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:177aa long hypothetical protein; PDBTitle: crystal structure of ph0347 protein from pyrococcus horikoshii ot3 5 d1xx7a_ 98.8 25 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 6 d1ynba1 98.2 21 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 7 c3kh1B_ 98.1 18 PDB header:hydrolase Chain: B: PDB Molecule:predicted metal-dependent phosphohydrolase; PDBTitle: crystal structure of predicted metal-dependent2 phosphohydrolase (zp_00055740.2) from magnetospirillum3 magnetotacticum ms-1 at 1.37 a resolution 8 d3b57a1 80.3 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 9 c2ogiA_ 76.2 23 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein sag1661; PDBTitle: crystal structure of a putative metal dependent phosphohydrolase2 (sag1661) from streptococcus agalactiae serogroup v at 1.85 a3 resolution 10 c2pgsA_ 73.1 14 PDB header:hydrolase Chain: A: PDB Molecule:putative deoxyguanosinetriphosphate triphosphohydrolase; PDBTitle: crystal structure of a putative deoxyguanosinetriphosphate2 triphosphohydrolase from pseudomonas syringae pv. phaseolicola 1448a 11 c2o08B_ 71.2 27 PDB header:hydrolase Chain: B: PDB Molecule:bh1327 protein; PDBTitle: crystal structure of a putative hd superfamily hydrolase (bh1327) from2 bacillus halodurans at 1.90 a resolution 12 c3ccgA_ 70.6 23 PDB header:hydrolase Chain: A: PDB Molecule:hd superfamily hydrolase; PDBTitle: crystal structure of predicted hd superfamily hydrolase involved in2 nad metabolism (np_347894.1) from clostridium acetobutylicum at 1.503 a resolution 13 d2pq7a1 70.2 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 14 c3nr1A_ 65.8 14 PDB header:hydrolase Chain: A: PDB Molecule:hd domain-containing protein 3; PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses 15 c1vj7B_ 58.9 13 PDB header:hydrolase, transferase Chain: B: PDB Molecule:bifunctional rela/spot; PDBTitle: crystal structure of the bifunctional catalytic fragment of relseq,2 the rela/spot homolog from streptococcus equisimilis. 16 c2dqbB_ 49.5 36 PDB header:hydrolase, dna binding protein Chain: B: PDB Molecule:deoxyguanosinetriphosphate triphosphohydrolase, putative; PDBTitle: crystal structure of dntp triphosphohydrolase from thermus2 thermophilus hb8, which is homologous to dgtp triphosphohydrolase 17 c3m1tA_ 48.6 9 PDB header:hydrolase Chain: A: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of putative phosphohydrolase (yp_929327.1) from2 shewanella amazonensis sb2b at 1.62 a resolution 18 d2heka1 47.5 23 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 19 d2pjqa1 45.6 25 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 20 c3nqwB_ 42.4 19 PDB header:hydrolase Chain: B: PDB Molecule:cg11900; PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses 21 c3hc1A_ not modelled 41.8 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized hdod domain protein; PDBTitle: crystal structure of hdod domain protein with unknown function2 (np_953345.1) from geobacter sulfurreducens at 1.90 a resolution 22 c3u1nC_ not modelled 40.2 36 PDB header:hydrolase Chain: C: PDB Molecule:sam domain and hd domain-containing protein 1; PDBTitle: structure of the catalytic core of human samhd1 23 d3dtoa1 not modelled 38.3 19 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 24 d1vqra_ not modelled 36.0 11 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:modified HD domain 25 d2qgsa1 not modelled 29.3 18 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 26 d1rm6c1 not modelled 29.0 29 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 27 c2o6iA_ not modelled 28.5 41 PDB header:hydrolase Chain: A: PDB Molecule:hd domain protein; PDBTitle: structure of an enterococcus faecalis hd domain phosphohydrolase 28 d2o6ia1 not modelled 28.5 41 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 29 c3aqnA_ not modelled 27.5 10 PDB header:transferase Chain: A: PDB Molecule:poly(a) polymerase; PDBTitle: complex structure of bacterial protein (apo form ii) 30 d1n62a1 not modelled 27.3 24 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 31 c2q14A_ not modelled 27.0 27 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase; PDBTitle: crystal structure of phosphohydrolase (bt4208) from bacteroides2 thetaiotaomicron vpi-5482 at 2.20 a resolution 32 d1zxia1 not modelled 26.3 24 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 33 c3hrdH_ not modelled 22.3 38 PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 34 d3djba1 not modelled 21.1 30 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 35 d1ffva1 not modelled 20.6 29 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 36 c1ffuA_ not modelled 20.4 29 PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 37 c3memA_ not modelled 20.2 14 PDB header:signaling protein Chain: A: PDB Molecule:putative signal transduction protein; PDBTitle: crystal structure of a putative signal transduction protein2 (maqu_0641) from marinobacter aquaeolei vt8 at 2.25 a resolution 38 d1t3qa1 not modelled 19.5 24 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 39 c3l09B_ not modelled 19.5 11 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator2 (jann_22dec04_contig27_revised_gene3569) from jannaschia sp. ccs1 at3 2.81 a resolution 40 c3gw7A_ not modelled 17.4 22 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein yedj; PDBTitle: crystal structure of a metal-dependent phosphohydrolase2 with conserved hd domain (yedj) from escherichia coli in3 complex with nickel ions. northeast structural genomics4 consortium target er63 41 c3skdA_ not modelled 17.2 23 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein tthb187; PDBTitle: crystal structure of the thermus thermophilus cas3 hd domain in the2 presence of ni2+ 42 c1t3qD_ not modelled 17.2 24 PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 43 d1v97a1 not modelled 17.0 29 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 44 d1b93a_ not modelled 17.0 11 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 45 c3bg2A_ not modelled 16.7 19 PDB header:hydrolase Chain: A: PDB Molecule:dgtp triphosphohydrolase; PDBTitle: crystal structure of deoxyguanosinetriphosphate triphosphohydrolase2 from flavobacterium sp. med217 46 d1vj7a1 not modelled 16.4 13 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 47 d1vmda_ not modelled 15.8 16 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 48 c1n60D_ not modelled 13.6 24 PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form 49 c2jo7A_ not modelled 12.9 23 PDB header:surface active protein Chain: A: PDB Molecule:glycosylphosphatidylinositol-anchored merozoite PDBTitle: solution structure of the adhesion protein bd37 from2 babesia divergens 50 c1rm6F_ not modelled 11.7 29 PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 51 d1dgja1 not modelled 11.5 25 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 52 c3ljvA_ not modelled 11.4 18 PDB header:transcription Chain: A: PDB Molecule:mmoq response regulator; PDBTitle: crystal structure of mmoq response regulator (fragment 29-302) from2 methylococcus capsulatus str. bath, northeast structural genomics3 consortium target mcr175m 53 d1z2cb1 not modelled 10.7 17 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Diap1 N-terninal region-like 54 d1vlba1 not modelled 10.3 21 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 55 d1ei1a1 not modelled 10.3 11 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 56 d1tuza_ not modelled 9.2 18 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 57 c2zklA_ not modelled 9.1 11 PDB header:isomerase Chain: A: PDB Molecule:capsular polysaccharide synthesis enzyme cap5f; PDBTitle: crystal structure of capsular polysaccharide assembling protein capf2 from staphylococcus aureus 58 c3eu8D_ not modelled 8.9 20 PDB header:hydrolase Chain: D: PDB Molecule:putative glucoamylase; PDBTitle: crystal structure of putative glucoamylase (yp_210071.1) from2 bacteroides fragilis nctc 9343 at 2.12 a resolution 59 c2lbbA_ not modelled 8.5 11 PDB header:protein binding Chain: A: PDB Molecule:acyl coa binding protein; PDBTitle: solution structure of acyl coa binding protein from babesia bovis t2bo 60 c2bnxA_ not modelled 8.4 17 PDB header:structural protein Chain: A: PDB Molecule:diaphanous protein homolog 1; PDBTitle: crystal structure of the dimeric regulatory domain of mouse2 diaphaneous-related formin (drf), mdia1 61 d2bnxa1 not modelled 8.4 17 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:Diap1 N-terninal region-like 62 d2enda_ not modelled 8.0 50 Fold:T4 endonuclease V Superfamily:T4 endonuclease V Family:T4 endonuclease V 63 c1vlbA_ not modelled 7.8 24 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a 64 d1kija1 not modelled 7.7 12 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 65 d1mx3a2 not modelled 7.7 33 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 66 d1b4ua_ not modelled 7.6 11 Fold:LigA subunit of an aromatic-ring-opening dioxygenase LigAB Superfamily:LigA subunit of an aromatic-ring-opening dioxygenase LigAB Family:LigA subunit of an aromatic-ring-opening dioxygenase LigAB 67 c2it8A_ not modelled 7.5 67 PDB header:plant protein Chain: A: PDB Molecule:trypsin inhibitor 2; PDBTitle: solution structure of a linear analog of the cyclic squash2 trypsin inhibitor mcoti-ii 68 d2it8a1 not modelled 7.5 67 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Plant inhibitors of proteinases and amylases Family:Plant inhibitors of proteinases and amylases 69 c2copA_ not modelled 7.4 16 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coenzyme a binding domain containing 6; PDBTitle: solution structure of rsgi ruh-040, an acbp domain from2 human cdna 70 d2ibna1 not modelled 7.4 27 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:MioX-like 71 c2huoA_ not modelled 7.3 24 PDB header:oxidoreductase Chain: A: PDB Molecule:inositol oxygenase; PDBTitle: crystal structure of mouse myo-inositol oxygenase in complex with2 substrate 72 d3bxda1 not modelled 7.3 24 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:MioX-like 73 d1ivza_ not modelled 7.0 5 Fold:Ferredoxin-like Superfamily:SEA domain Family:SEA domain 74 d1y8xb1 not modelled 6.8 31 Fold:Activating enzymes of the ubiquitin-like proteins Superfamily:Activating enzymes of the ubiquitin-like proteins Family:Ubiquitin activating enzymes (UBA) 75 c3i7aA_ not modelled 6.8 11 PDB header:hydrolase Chain: A: PDB Molecule:putative metal-dependent phosphohydrolase; PDBTitle: crystal structure of putative metal-dependent phosphohydrolase2 (yp_926882.1) from shewanella amazonensis sb2b at 2.06 a resolution 76 c3fnvB_ not modelled 6.8 19 PDB header:metal binding protein Chain: B: PDB Molecule:cdgsh iron sulfur domain-containing protein 2; PDBTitle: crystal structure of miner1: the redox-active 2fe-2s protein causative2 in wolfram syndrome 2 77 c3ojlA_ not modelled 6.7 20 PDB header:oxidoreductase Chain: A: PDB Molecule:cap5o; PDBTitle: native structure of the udp-n-acetyl-mannosamine dehydrogenase cap5o2 from staphylococcus aureus 78 c4a2iV_ not modelled 6.7 11 PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor 79 d1ha9a_ not modelled 6.5 67 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Plant inhibitors of proteinases and amylases Family:Plant inhibitors of proteinases and amylases 80 d1hbka_ not modelled 6.3 11 Fold:Acyl-CoA binding protein-like Superfamily:Acyl-CoA binding protein Family:Acyl-CoA binding protein 81 d1dw0a_ not modelled 6.3 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 82 c2cquA_ not modelled 6.2 18 PDB header:isomerase Chain: A: PDB Molecule:peroxisomal d3,d2-enoyl-coa isomerase; PDBTitle: solution structure of rsgi ruh-045, a human acyl-coa2 binding protein 83 c3gwnA_ not modelled 6.1 19 PDB header:oxidoreductase Chain: A: PDB Molecule:probable fad-linked sulfhydryl oxidase r596; PDBTitle: crystal structure of the fad binding domain from mimivirus sulfhydryl2 oxidase r596 84 d2raqa1 not modelled 6.1 23 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 85 c2po8A_ not modelled 6.1 67 PDB header:plant protein Chain: A: PDB Molecule:mcoti-ii; PDBTitle: the structure of a two-disulfide intermediate of mcoti-ii 86 d1hjra_ not modelled 6.0 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:RuvC resolvase 87 c1tg6G_ not modelled 5.9 8 PDB header:hydrolase Chain: G: PDB Molecule:putative atp-dependent clp protease proteolytic subunit; PDBTitle: crystallography and mutagenesis point to an essential role for the n-2 terminus of human mitochondrial clpp 88 c1m3wA_ not modelled 5.8 30 PDB header:de novo protein Chain: A: PDB Molecule:h10h24; PDBTitle: crystal structure of a molecular maquette scaffold 89 c1m3wB_ not modelled 5.8 30 PDB header:de novo protein Chain: B: PDB Molecule:h10h24; PDBTitle: crystal structure of a molecular maquette scaffold 90 c1m3wC_ not modelled 5.8 30 PDB header:de novo protein Chain: C: PDB Molecule:h10h24; PDBTitle: crystal structure of a molecular maquette scaffold 91 c1m3wD_ not modelled 5.8 30 PDB header:de novo protein Chain: D: PDB Molecule:h10h24; PDBTitle: crystal structure of a molecular maquette scaffold 92 d1hyoa1 not modelled 5.7 29 Fold:SH3-like barrel Superfamily:Fumarylacetoacetate hydrolase, FAH, N-terminal domain Family:Fumarylacetoacetate hydrolase, FAH, N-terminal domain 93 c3kfwX_ not modelled 5.7 12 PDB header:structural genomics, unknown function Chain: X: PDB Molecule:uncharacterized protein; PDBTitle: uncharacterized protein rv0674 from mycobacterium tuberculosis 94 c1dgjA_ not modelled 5.5 29 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774 95 d1jroa1 not modelled 5.4 40 Fold:CO dehydrogenase ISP C-domain like Superfamily:CO dehydrogenase ISP C-domain like Family:CO dehydrogenase ISP C-domain like 96 c3q7hM_ not modelled 5.4 13 PDB header:hydrolase Chain: M: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: structure of the clpp subunit of the atp-dependent clp protease from2 coxiella burnetii 97 d1tg6a1 not modelled 5.3 8 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 98 d1hb6a_ not modelled 5.2 11 Fold:Acyl-CoA binding protein-like Superfamily:Acyl-CoA binding protein Family:Acyl-CoA binding protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0