PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3hc1A_

Fold library id	PDB Header	Molecule	Title
c3hc1A_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: uncharacterized hdod domain protein;	PDBTitle: crystal structure of hdod domain protein with unknown2 function (np_953345.1) from geobacter sulfurreducens at3 1.90 a resolution

Links to external resources
Added to library: Sun Aug 29 01:23:11 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D V E T R L T L A R E F X S G V D E L P T V P D I V L R I A G K L N D P D V A I D E V A D L L L Q D Q V L T A R V V H L A N S P L Y S A A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
T T
T T
T T
S T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P I S S I R D A V I Y L G L D L L R E A I F T C A I V D L F K T G K G P L N R S T L W A H S L G V A R I A K L I A E R T G F L N P V N V Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A G L L H D V G E V F I N F F R G K E F S Q V V T L V D E E K I T F G Q A E E R L F G T S H C E V G F A L A K R W S L N E F I C D T I L Y H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S S
T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence H D I E A V P Y K Q A A I V A X V A F A D E Y C T L R R L G F E G H K P V D S V R T L L E N H P S W G V I R R S L G G S D F D E K L I V A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G
S S S
T T S
S
S
T S T T

. . . . . . . . . 290 . . . . . . . .

Sequence L D S S I V E I R A A V D E L F L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	V	E	T	R	L	T	L	A	R	E	F	X	S	G	V	D	E	L	P	T	V	P	D	I	V	L	R	I	A	G	K	L	N	D	P	D	V	A	I	D	E	V	A	D	L	L	L	Q	D	Q	V	L	T	A	R	V	V	H	L	A	N	S	P	L	Y	S	A	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T		S	S															T	T		T	T											T	T														S					T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	I	S	S	I	R	D	A	V	I	Y	L	G	L	D	L	L	R	E	A	I	F	T	C	A	I	V	D	L	F	K	T	G	K	G	P	L	N	R	S	T	L	W	A	H	S	L	G	V	A	R	I	A	K	L	I	A	E	R	T	G	F	L	N	P	V	N	V	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S																												S				S	S																							T	T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	G	L	L	H	D	V	G	E	V	F	I	N	F	F	R	G	K	E	F	S	Q	V	V	T	L	V	D	E	E	K	I	T	F	G	Q	A	E	E	R	L	F	G	T	S	H	C	E	V	G	F	A	L	A	K	R	W	S	L	N	E	F	I	C	D	T	I	L	Y	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T										S																											S	S													T	T												T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	H	D	I	E	A	V	P	Y	K	Q	A	A	I	V	A	X	V	A	F	A	D	E	Y	C	T	L	R	R	L	G	F	E	G	H	K	P	V	D	S	V	R	T	L	L	E	N	H	P	S	W	G	V	I	R	R	S	L	G	G	S	D	F	D	E	K	L	I	V	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		G	G	G		S	S	S																		T	T	S			S						S										T									S	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Sequence	L	D	S	S	I	V	E	I	R	A	A	V	D	E	L	F	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)