PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ljvA_

Fold library id	PDB Header	Molecule	Title
c3ljvA_	PDB header: transcription	Chain: A: PDB Molecule: mmoq response regulator;	PDBTitle: crystal structure of mmoq response regulator (fragment 29-2 302) from methylococcus capsulatus str. bath, northeast3 structural genomics consortium target mcr175m

Links to external resources
Added to library: Sat Aug 28 21:02:12 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X L C D S L P T A S R T A A A I L N L A Q R E D V T A E A L A Q L I Q T D P A L T G R I L R F A N A P A R R P V A S V I D A I D L V G L P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T S S S
T T
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V R Q F A L S L S L I D A H R E G R C E A F D Y A A Y W Q K S L A R A V A L Q S I T A Q A V A P K E A F T L G L L A D V G R L A L A T A W P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S
T T
T T S
T T G G G
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E E Y S E C L R K A D G E A L I A L E R E R F A T D H D E L T R X L L T D W G F P Q V F I D A L Q L S Q Q T G R F A R Q L A L A Q H I A D H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
T S S
T T
T T

. . . . . . . . . 220

Sequence R L G D E D L A R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	L	C	D	S	L	P	T	A	S	R	T	A	A	A	I	L	N	L	A	Q	R	E	D	V	T	A	E	A	L	A	Q	L	I	Q	T	D	P	A	L	T	G	R	I	L	R	F	A	N	A	P	A	R	R	P	V	A	S	V	I	D	A	I	D	L	V	G	L	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																		T	S	S	S											T	T														S								S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	R	Q	F	A	L	S	L	S	L	I	D	A	H	R	E	G	R	C	E	A	F	D	Y	A	A	Y	W	Q	K	S	L	A	R	A	V	A	L	Q	S	I	T	A	Q	A	V	A	P	K	E	A	F	T	L	G	L	L	A	D	V	G	R	L	A	L	A	T	A	W	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T					T	S	S		T	T			T	T	S																		T	T	G	G	G														T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	E	Y	S	E	C	L	R	K	A	D	G	E	A	L	I	A	L	E	R	E	R	F	A	T	D	H	D	E	L	T	R	X	L	L	T	D	W	G	F	P	Q	V	F	I	D	A	L	Q	L	S	Q	Q	T	G	R	F	A	R	Q	L	A	L	A	Q	H	I	A	D	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S	S			T												S	S													T	T												T	T
	.	.	.	.	.	.	.	.	.	220
Sequence	R	L	G	D	E	D	L	A	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	T