Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	L	L	G	P	R	D	A	N	G	I	P	V	P	M	T	V	D	E	S	I	A	S	M	K	A	S	L	L	K	K	I	K	R	S	A	Y	V	Y	R	V	D	C	G	G	C	N	G	C	E	I	E	I	F	A	T	L	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	L	F	D	A	E	R	F	G	I	K	V	V	P	S	P	R	H	A	D	I	L	L	F	T	G	A	V	T	R	A	M	R	S	P	A	L	R	A	W	Q	S	A	P	D	P	K	I	C	I	S	Y	G	A	C	G	N	S	G	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	F	H	D	L	Y	C	V	W	G	G	T	D	K	I	V	P	V	D	V	Y	I	P	G	C	P	P	T	P	A	A	T	L	Y	G	F	A	M	A	L	G	L	L	E	Q	K	I	H	A	R	G	P	G	E	L	D	E	Q	P	A
Secondary structure
SS confidence
Disorder																																																?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	I	L	H	G	D	M	V	Q	P	L	R	V	K	V	D	R	E	A	R	R	L	A	G	Y	R	Y	G	R	Q	I	A	D	D	Y	L	T	Q	L	G	Q	G	E	E	Q	V	A	R	W	L	E	A	E	N	D	P	R	L	N	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																				?	?	?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Sequence		I	V	S	H	L	N	H	V	V	E	E	A	R	I	R
Secondary structure
SS confidence
Disorder													?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2fug chain 6 domain 1 Region: 19 - 181 Aligned: 140 Modelled: 147 Confidence: 100.0% Identity: 36% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nq06-like Phyre2 PDB 1frf chain S Region: 35 - 160 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 22% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1e3d chain A Region: 38 - 187 Aligned: 143 Modelled: 150 Confidence: 99.9% Identity: 22% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1wui chain S domain 1 Region: 35 - 160 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 21% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1h2a chain S Region: 35 - 160 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 21% PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris Phyre2 PDB 3rgw chain S Region: 38 - 161 Aligned: 124 Modelled: 123 Confidence: 99.9% Identity: 24% PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster Phyre2 PDB 1yq9 chain A domain 1 Region: 35 - 160 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 21% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1cc1 chain S Region: 36 - 187 Aligned: 152 Modelled: 151 Confidence: 99.9% Identity: 26% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 3myr chain E Region: 36 - 161 Aligned: 126 Modelled: 125 Confidence: 99.9% Identity: 22% PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state Phyre2 PDB 2wpn chain A Region: 38 - 160 Aligned: 123 Modelled: 123 Confidence: 99.8% Identity: 25% PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough Phyre2 PDB 2v4j chain A Region: 65 - 146 Aligned: 80 Modelled: 82 Confidence: 69.5% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration Phyre2 PDB 2dld chain A domain 2 Region: 79 - 179 Aligned: 88 Modelled: 101 Confidence: 66.9% Identity: 14% Fold: Flavodoxin-like Superfamily: Formate/glycerate dehydrogenase catalytic domain-like Family: Formate/glycerate dehydrogenases, substrate-binding domain Phyre2 PDB 1e5d chain A domain 1 Region: 77 - 170 Aligned: 92 Modelled: 94 Confidence: 65.7% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2d1e chain A Region: 36 - 219 Aligned: 164 Modelled: 169 Confidence: 56.3% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:phycocyanobilin:ferredoxin oxidoreductase; PDBTitle: crystal structure of pcya-biliverdin complex Phyre2 PDB 3rl4 chain A Region: 78 - 115 Aligned: 38 Modelled: 38 Confidence: 54.9% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:metallophosphoesterase mpped2; PDBTitle: rat metallophosphodiesterase mpped2 g252h mutant Phyre2 PDB 1vme chain A domain 1 Region: 64 - 164 Aligned: 95 Modelled: 101 Confidence: 50.0% Identity: 13% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 2d3y chain A Region: 90 - 116 Aligned: 27 Modelled: 27 Confidence: 43.9% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8 Phyre2 PDB 2r47 chain C Region: 60 - 144 Aligned: 75 Modelled: 85 Confidence: 41.3% Identity: 17% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein mth_862; PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus Phyre2 PDB 1sqs chain A Region: 10 - 120 Aligned: 111 Modelled: 111 Confidence: 39.3% Identity: 11% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Hypothetical protein SP1951 Phyre2 PDB 2z1d chain A Region: 88 - 146 Aligned: 51 Modelled: 56 Confidence: 38.1% Identity: 18% PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis Phyre2 1 d2fug61 2 d1frfs_ 3 d1e3da_ 4 d1wuis1 5 c1h2aS_ 6 c3rgwS_ 7 d1yq9a1 8 d1cc1s_ 9 c3myrE_ 10 c2wpnA_ 11 c2v4jA_ 12 d2dlda2 13 d1e5da1 14 c2d1eA_ 15 c3rl4A_ 16 d1vmea1 17 c2d3yA_ 18 c2r47C_ 19 d1sqsa_ 20 c2z1dA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2fug61 100.0 36 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nq06-like 2 d1frfs_ 99.9 22 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 3 d1e3da_ 99.9 22 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 4 d1wuis1 99.9 21 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 5 c1h2aS_ 99.9 21 PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 6 c3rgwS_ 99.9 24 PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster 7 d1yq9a1 99.9 21 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 8 d1cc1s_ 99.9 26 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 9 c3myrE_ 99.9 22 PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 10 c2wpnA_ 99.8 25 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 11 c2v4jA_ 69.5 14 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 12 d2dlda2 66.9 14 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 13 d1e5da1 65.7 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 14 c2d1eA_ 56.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:phycocyanobilin:ferredoxin oxidoreductase; PDBTitle: crystal structure of pcya-biliverdin complex 15 c3rl4A_ 54.9 24 PDB header:hydrolase Chain: A: PDB Molecule:metallophosphoesterase mpped2; PDBTitle: rat metallophosphodiesterase mpped2 g252h mutant 16 d1vmea1 50.0 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 17 c2d3yA_ 43.9 15 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8 18 c2r47C_ 41.3 17 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein mth_862; PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus 19 d1sqsa_ 39.3 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 20 c2z1dA_ 38.1 18 PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis 21 c3trhI_ not modelled 31.9 25 PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii 22 c3klbA_ not modelled 28.6 19 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 23 c1coyA_ not modelled 27.9 15 PDB header:oxidoreductase(oxygen receptor) Chain: A: PDB Molecule:cholesterol oxidase; PDBTitle: crystal structure of cholesterol oxidase complexed with a2 steroid substrate. implications for fad dependent alcohol3 oxidases 24 c3ca8B_ not modelled 27.2 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme 25 c3na7A_ not modelled 26.8 13 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 26 c2q9uB_ not modelled 25.3 16 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 27 d2dlda1 not modelled 25.2 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 28 c3ikbB_ not modelled 23.7 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159. 29 c2gn0A_ not modelled 22.9 18 PDB header:lyase Chain: A: PDB Molecule:threonine dehydratase catabolic; PDBTitle: crystal structure of dimeric biodegradative threonine deaminase (tdcb)2 from salmonella typhimurium at 1.7 a resolution (triclinic form with3 one complete subunit built in alternate conformation) 30 c1e5dA_ not modelled 22.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 31 d1j4aa1 not modelled 22.6 7 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 32 d2ac7a1 not modelled 21.8 26 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 33 d2yt9a2 not modelled 20.9 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 34 d1ycga1 not modelled 20.6 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 35 d2f2ab2 not modelled 20.6 27 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:GatB/GatE catalytic domain-like 36 d1w85a_ not modelled 19.4 17 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module 37 c1xrsB_ not modelled 19.3 21 PDB header:isomerase Chain: B: PDB Molecule:d-lysine 5,6-aminomutase beta subunit; PDBTitle: crystal structure of lysine 5,6-aminomutase in complex with plp,2 cobalamin, and 5'-deoxyadenosine 38 c3bsfB_ not modelled 19.0 17 PDB header:hydrolase Chain: B: PDB Molecule:at4g34840; PDBTitle: crystal structure of the mta/sah nucleosidase 39 c3nm5B_ not modelled 18.7 9 PDB header:hydrolase Chain: B: PDB Molecule:mta/sah nucleosidase; PDBTitle: helicobacter pylori mtan complexed with formycin a 40 c2g5iB_ not modelled 18.1 27 PDB header:ligase Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4 41 c1ychD_ not modelled 17.7 16 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 42 d1jysa_ not modelled 17.6 26 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 43 d1xm7a_ not modelled 17.2 29 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Hypothetical protein aq 1666 44 d1sc6a1 not modelled 17.0 5 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 45 c2is8A_ not modelled 16.8 24 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 46 c1geaA_ not modelled 16.7 60 PDB header:neuropeptide Chain: A: PDB Molecule:pituitary adenylate cyclase activating PDBTitle: receptor-bound conformation of pacap21 47 c3bl6A_ not modelled 16.1 14 PDB header:hydrolase Chain: A: PDB Molecule:5'-methylthioadenosine nucleosidase/s- PDBTitle: crystal structure of staphylococcus aureus 5'-2 methylthioadenosine/s-adenosylhomocysteine nucleosidase in3 complex with formycin a 48 c2wzlA_ not modelled 15.8 33 PDB header:viral protein Chain: A: PDB Molecule:phosphoprotein; PDBTitle: the structure of the n-rna binding domain of the mokola2 virus phosphoprotein 49 d1pwha_ not modelled 15.7 23 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 50 c3d3kD_ not modelled 15.6 12 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 51 d2f7wa1 not modelled 15.5 18 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 52 c1zosE_ not modelled 15.5 14 PDB header:hydrolase Chain: E: PDB Molecule:5'-methylthioadenosine / s-adenosylhomocysteine PDBTitle: structure of 5'-methylthionadenosine/s-adenosylhomocysteine2 nucleosidase from s. pneumoniae with a transition-state3 inhibitor mt-imma 53 c3eeiA_ not modelled 15.3 14 PDB header:hydrolase Chain: A: PDB Molecule:5-methylthioadenosine nucleosidase/s- PDBTitle: crystal structure of 5'-methylthioadenosine/s-2 adenosylhomocysteine nucleosidase from neisseria3 meningitidis in complex with methylthio-immucillin-a 54 d1wiwa_ not modelled 15.3 25 Fold:SIS domain Superfamily:SIS domain Family:double-SIS domain 55 c3pdiB_ not modelled 14.9 13 PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen 56 c3k1yE_ not modelled 14.7 11 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 57 d2h1qa1 not modelled 14.4 15 Fold:PLP-dependent transferase-like Superfamily:Dhaf3308-like Family:Dhaf3308-like 58 d2bfda1 not modelled 14.4 11 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module 59 c2rmzA_ not modelled 14.0 19 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment 60 d1umda_ not modelled 14.0 9 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module 61 c3c7bA_ not modelled 13.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 62 c2qneA_ not modelled 13.8 18 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase; PDBTitle: crystal structure of putative methyltransferase (zp_00558420.1) from2 desulfitobacterium hafniense y51 at 2.30 a resolution 63 d1th5a1 not modelled 13.8 14 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 64 c3npgD_ not modelled 13.7 12 PDB header:unknown function Chain: D: PDB Molecule:uncharacterized duf364 family protein; PDBTitle: crystal structure of a protein with unknown function from duf3642 family (ph1506) from pyrococcus horikoshii at 2.70 a resolution 65 d1xwdb1 not modelled 13.5 19 Fold:Cystine-knot cytokines Superfamily:Cystine-knot cytokines Family:Gonadodropin/Follitropin 66 d1fyja_ not modelled 13.4 71 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:a tRNA synthase domain 67 c1qfwB_ not modelled 13.4 25 PDB header:immune system Chain: B: PDB Molecule:gonadotrophin beta subunit; PDBTitle: ternary complex of human chorionic gonadotropin with fv anti alpha2 subunit and fv anti beta subunit 68 c1zj8B_ not modelled 13.4 15 PDB header:oxidoreductase Chain: B: PDB Molecule:probable ferredoxin-dependent nitrite reductase nira; PDBTitle: structure of mycobacterium tuberculosis nira protein 69 d1hcnb_ not modelled 13.3 25 Fold:Cystine-knot cytokines Superfamily:Cystine-knot cytokines Family:Gonadodropin/Follitropin 70 c2ax3A_ not modelled 13.2 21 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 71 d1nwba_ not modelled 13.1 17 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 72 d1fmfa_ not modelled 13.0 15 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 73 c3edoA_ not modelled 12.9 12 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 74 c1vmeB_ not modelled 12.7 13 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 75 d1m1na_ not modelled 12.5 11 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 76 d1ygya1 not modelled 12.4 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 77 c3dp9A_ not modelled 12.4 20 PDB header:hydrolase Chain: A: PDB Molecule:mta/sah nucleosidase; PDBTitle: crystal structure of vibrio cholerae 5'-methylthioadenosine/s-adenosyl2 homocysteine nucleosidase (mtan) complexed with butylthio-dadme-3 immucillin a 78 d1vyia_ not modelled 12.3 33 Fold:Phosphoprotein M1, C-terminal domain Superfamily:Phosphoprotein M1, C-terminal domain Family:Phosphoprotein M1, C-terminal domain 79 c3i4zA_ not modelled 12.3 13 PDB header:transferase Chain: A: PDB Molecule:tryptophan dimethylallyltransferase; PDBTitle: crystal structure of the dimethylallyl tryptophan synthase fgapt2 from2 aspergillus fumigatus 80 c3tl6B_ not modelled 12.0 17 PDB header:transferase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of purine nucleoside phosphorylase from entamoeba2 histolytica 81 c2dmlA_ not modelled 11.9 31 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a6 82 c2dbqA_ not modelled 11.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:glyoxylate reductase; PDBTitle: crystal structure of glyoxylate reductase (ph0597) from pyrococcus2 horikoshii ot3, complexed with nadp (i41) 83 d2b4ya1 not modelled 11.9 21 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 84 d3cxeb1 not modelled 11.7 83 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 85 c2dg2D_ not modelled 11.7 25 PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein 86 d2fd6u3 not modelled 11.6 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Extracellular domain of cell surface receptors 87 d2i9be3 not modelled 11.6 83 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Extracellular domain of cell surface receptors 88 d2naca1 not modelled 11.5 2 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 89 c3oa1B_ not modelled 11.4 30 PDB header:chaperone Chain: B: PDB Molecule:phosphoprotein; PDBTitle: crystal structure of phosphoprotein/protein p/protein m1 residues 69-2 297 from rabies virus reveals degradation to c-terminal domain only 90 c3aerC_ not modelled 11.4 17 PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 91 c2g76A_ not modelled 11.3 5 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of human 3-phosphoglycerate dehydrogenase 92 d2db7a1 not modelled 11.3 35 Fold:Orange domain-like Superfamily:Orange domain-like Family:Hairy Orange domain 93 c1vddC_ not modelled 11.2 29 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 94 c3orsD_ not modelled 11.2 21 PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus 95 c2a5yA_ not modelled 11.2 17 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis regulator ced-9; PDBTitle: structure of a ced-4/ced-9 complex 96 d2ax3a2 not modelled 11.1 21 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like 97 c3rfqC_ not modelled 11.0 26 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 98 d2fug71 not modelled 11.0 71 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Nqo15-like 99 c3pdiG_ not modelled 10.8 18 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0