BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (255 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacter...   526   e-148
UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobac...   313   3e-84
UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bac...   309   5e-83
UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5        233   5e-60
UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shige...   174   3e-42
UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=c...   151   2e-35
UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   148   1e-34
UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-li...   148   1e-34
UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   144   2e-33
UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   144   3e-33
UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase sma...   143   7e-33
UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID...   141   2e-32
UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   140   3e-32
UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   140   3e-32
UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen l...   137   5e-31
UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   136   7e-31
UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   136   7e-31
UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=...   135   1e-30
UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   133   6e-30
UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit ...   133   6e-30
UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteob...   130   3e-29
UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   129   1e-28
UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   128   2e-28
UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=...   126   7e-28
UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   125   1e-27
UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   125   1e-27
UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen l...   125   2e-27
UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 T...   124   2e-27
UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collins...   124   4e-27
UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   122   8e-27
UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   122   1e-26
UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarch...   121   3e-26
UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfit...   121   3e-26
UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   118   2e-25
UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   117   3e-25
UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteri...   114   2e-24
UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   113   6e-24
UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collins...   110   7e-23
UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   109   9e-23
UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   108   2e-22
UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   108   2e-22
UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   107   3e-22
UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   107   3e-22
UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteria...   106   7e-22
UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   105   1e-21
UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   105   1e-21
UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=...   105   1e-21
UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   105   2e-21
UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax...   105   2e-21
UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   103   4e-21
UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=c...   103   7e-21
UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   102   9e-21
UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   102   1e-20
UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meio...   102   2e-20
UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   101   2e-20
UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=...   101   3e-20
UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ...   100   4e-20
UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   100   4e-20
UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 ...   100   7e-20
UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarch...   100   8e-20
UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    99   1e-19
UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=...    99   1e-19
UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=...    99   2e-19
UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Ep...    99   2e-19
UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=...    99   2e-19
UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea R...    98   2e-19
UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=B...    98   2e-19
UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=...    98   2e-19
UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=B...    98   3e-19
UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax...    98   3e-19
UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemm...    97   3e-19
UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...    97   4e-19
UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=p...    97   4e-19
UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...    97   5e-19
UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...    97   5e-19
UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...    97   7e-19
UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=F...    96   1e-18
UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...    96   1e-18
UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=F...    95   2e-18
UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    95   2e-18
UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Ta...    95   2e-18
UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=S...    95   2e-18
UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    95   3e-18
UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...    94   4e-18
UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=c...    94   4e-18
UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    94   5e-18
UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japoni...    94   5e-18
UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=...    94   6e-18
UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd s...    94   6e-18
UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospiri...    93   7e-18
UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=c...    93   7e-18
UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=N...    93   7e-18
UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=P...    93   8e-18
UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=c...    93   8e-18
UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=...    93   9e-18
UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    92   1e-17
UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=De...    92   1e-17
UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydr...    92   2e-17
UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=...    92   2e-17
UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Ta...    91   3e-17
UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    91   4e-17
UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria...    91   5e-17
UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermopl...    91   5e-17
UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=P...    90   6e-17
UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometr...    90   6e-17
UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...    90   6e-17
UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cy...    90   7e-17
UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 T...    90   9e-17
UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Pr...    90   9e-17
UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    90   9e-17
UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyce...    89   2e-16
UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit fa...    88   2e-16
UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...    88   3e-16
UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur prot...    88   3e-16
UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...    87   7e-16
UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=T...    86   1e-15
UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (Mbx...    86   1e-15
UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=F...    86   2e-15
UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax...    85   3e-15
UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    84   3e-15
UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax...    84   5e-15
UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophi...    84   6e-15
UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=S...    83   7e-15
UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ...    82   1e-14
UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=...    82   1e-14
UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Glucono...    82   2e-14
UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=T...    82   2e-14
UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea Rep...    81   3e-14
UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...    79   1e-13
UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax...    79   2e-13
UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=...    78   2e-13
UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 ...    77   4e-13
UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulib...    77   8e-13
UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 ...    76   1e-12
UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=T...    74   4e-12
UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q...    74   6e-12
UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=...    69   1e-10
UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=D...    69   2e-10
UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulf...    63   1e-08
UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A...    62   2e-08
UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, puta...    60   5e-08
UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=G...    60   6e-08
UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=I...    59   2e-07
UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 ...    51   4e-05
UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetom...    50   8e-05
UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n...    47   9e-04
UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN     45   0.002
UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxi...    45   0.002
UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=...    44   0.007
UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    43   0.011
UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota ...    41   0.045
UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax...    40   0.085

>UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacteria RepID=HYCG_ECOLI
          Length = 255

 Score =  526 bits (1355), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS
Sbjct: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG
Sbjct: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120

Query: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA
Sbjct: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180

Query: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240
           EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE
Sbjct: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240

Query: 241 IVSHLNHVVEEARIR 255
           IVSHLNHVVEEARIR
Sbjct: 241 IVSHLNHVVEEARIR 255


>UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobacteria
           RepID=C6ANV6_AGGAN
          Length = 258

 Score =  313 bits (803), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/247 (62%), Positives = 197/247 (79%), Gaps = 5/247 (2%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           P   NGI  P ++DE+IA MK +LLK I+RSAYVYRVDCGGCNGCEIEIF+T++P+FDAE
Sbjct: 6   PMPVNGISTPFSIDENIAKMKQALLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPVFDAE 65

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           RFGIKVV SPRHADILLFTG+VTRAMR+PA+RA+Q+APDPKICI+YGACG  GGIFHDLY
Sbjct: 66  RFGIKVVASPRHADILLFTGSVTRAMRTPAMRAYQAAPDPKICIAYGACGCGGGIFHDLY 125

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
           CVWGG+D+IVPVDVYIPGCPPTPAAT+YGFAMALGLL+QK+  +         A++    
Sbjct: 126 CVWGGSDQIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLKGKQEKADPNAEAKLRFPT 185

Query: 187 MVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEE-----QVARWLEAENDPRLNEI 241
           +   LR+ ++REARRLAGYR G  IA+ ++  + + ++     ++  +LE E DPRL+EI
Sbjct: 186 IPLDLRISLEREARRLAGYRQGGNIANQFMAMMSEDDKVPFGVRLGEYLEREADPRLSEI 245

Query: 242 VSHLNHV 248
           ++ L+ +
Sbjct: 246 INRLHAI 252


>UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bacteria
           RepID=C7MLM8_CRYCD
          Length = 283

 Score =  309 bits (792), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 146/238 (61%), Positives = 183/238 (76%), Gaps = 4/238 (1%)

Query: 16  PMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS 75
           P  +D+ IA  KA+LL  IKRS Y+YRVDCGGCNGCEIEIF TL+P+FDAERFGIK + S
Sbjct: 37  PKVLDQKIAEAKAALLNDIKRSVYIYRVDCGGCNGCEIEIFGTLTPVFDAERFGIKNMAS 96

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PRHADIL++TGAVTRAMR PALRA+++APDPK+ +SYGACG +GGIFHD YCVWGGTDK+
Sbjct: 97  PRHADILVYTGAVTRAMRLPALRAYEAAPDPKLIVSYGACGCTGGIFHDNYCVWGGTDKL 156

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
            PVDVYIPGCPP+PA T+YGFAMALGLL QK+H +   E + + A I+  D+   LR ++
Sbjct: 157 FPVDVYIPGCPPSPAQTIYGFAMALGLLGQKLHEKHLVEGEGEQAPIMFADIPYKLRCEL 216

Query: 196 DREARRLAGYRYGRQIADDYLTQL----GQGEEQVARWLEAENDPRLNEIVSHLNHVV 249
           +REARR+AGY YGR + D ++  L    G+    V   +EAE+DPR  EI + L  ++
Sbjct: 217 EREARRMAGYVYGRDLVDTFMQALEPEDGKVLTSVDALIEAESDPRKVEIYADLKQIL 274


>UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5
          Length = 274

 Score =  233 bits (594), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 117/237 (49%), Positives = 160/237 (67%), Gaps = 14/237 (5%)

Query: 25  SMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
           + K   LK IKRS  VYR+DCG CNGCEIEIFA ++P++D ERFG K+V +PRHADIL+ 
Sbjct: 17  TAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKLVANPRHADILIC 76

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
           +G VTR M  P LRA+++APDPKI +++GACG+SGGIFHD Y VWGG DKI+PVDVYIPG
Sbjct: 77  SGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSSGGIFHDAYSVWGGIDKIIPVDVYIPG 136

Query: 145 CPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI---LHGDMVQPLRVKVDREARR 201
           CPP PA+ +YG  MALG+++QK+H +   +    P  +   + GD++      +  E++R
Sbjct: 137 CPPHPASVIYGLGMALGIIDQKLHKKSYEDDSTLPPPVEKSVIGDIL--FERDLQAESKR 194

Query: 202 LAGYRYGRQIADDYLTQLGQGEE----QVAR--WLEA---ENDPRLNEIVSHLNHVV 249
           L  Y +GR + D Y++ +    +      AR   LEA   E DPR  E ++ L++ V
Sbjct: 195 LMSYIFGRALFDKYMSAIKTASDVHDPNSARTAMLEAIKKEEDPRYAECMALLHNDV 251


>UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shigella sp. D9
           RepID=UPI0001B52F0A
          Length = 173

 Score =  174 bits (440), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 94/117 (80%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           + P     +  P+T+DE    MK  LL+ I+RSAYVYRVDCGGCN CEIEIFA ++P+FD
Sbjct: 1   MSPVLTQHVSQPITLDEQTQKMKQHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFD 60

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
           AERFGIKV+ SPRHADILLFTGAVTRAMR PALRA++SAPD KIC+SYGACG  GG 
Sbjct: 61  AERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGAGGGF 117


>UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=cellular organisms
           RepID=A3DKH2_STAMF
          Length = 165

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/137 (49%), Positives = 91/137 (66%)

Query: 29  SLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAV 88
           S  K I+ + ++   + G CNGC+IE+ A ++PL+D ERFGIK+ PS RHADIL+ TGAV
Sbjct: 22  SKYKIIRYTPWLIHFNTGACNGCDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTGAV 81

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPT 148
           T+       R ++  PDPK  ++ GAC  SGG+FH+ Y V  GTDK++PVD+Y+PGCPP 
Sbjct: 82  TKKAAERLKRLYEQMPDPKFVVAVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCPPR 141

Query: 149 PAATLYGFAMALGLLEQ 165
           P A L G    L  LE 
Sbjct: 142 PEAILDGIVKLLKRLES 158


>UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=14 Tax=Bacteria
           RepID=B1ZSE5_OPITP
          Length = 279

 Score =  148 bits (374), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/133 (50%), Positives = 91/133 (68%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           + RS ++  VD G CNGCE+EI A   P++D ERFGI +V SPRHAD+LL TG VTR M 
Sbjct: 147 LGRSLHIREVDAGSCNGCEVEINALSGPIYDLERFGIHLVASPRHADMLLVTGPVTRNME 206

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               + + + P+P++ ++ GACG SGG+F   Y   G  D ++PVDVYIPGCPP P A L
Sbjct: 207 LALRKTYDATPEPRLVVAVGACGCSGGMFGRNYATCGSVDSVLPVDVYIPGCPPNPFALL 266

Query: 154 YGFAMALGLLEQK 166
           +G  +A+G LE++
Sbjct: 267 HGILLAVGRLEKR 279


>UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-like) n=1
           Tax=uncultured methanogenic archaeon RC-I
           RepID=Q0W2C0_UNCMA
          Length = 247

 Score =  148 bits (374), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 97/151 (64%), Gaps = 4/151 (2%)

Query: 20  DESIASMKASLLKKIK----RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS 75
           D  + S    L KKIK    RS  +  VD G CNGCE+E+ +  + ++D ERFG+ +V S
Sbjct: 95  DFDVESSGRELEKKIKKAFGRSLAIREVDAGSCNGCEVEVNSLSNAIYDIERFGLHIVAS 154

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PRHAD LL TG VTR M    ++++ + PDPK+ I+ GAC  +GGIF D Y V+ G D +
Sbjct: 155 PRHADALLVTGPVTRNMERGLMQSYNATPDPKMVIAMGACAITGGIFRDSYAVYNGVDAL 214

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
           VPVDVYIPGCPP P A + G  +A+   E+K
Sbjct: 215 VPVDVYIPGCPPRPQAIIQGIMLAIDRWEEK 245


>UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Thermofilum
           pendens Hrk 5 RepID=A1RWL1_THEPD
          Length = 245

 Score =  144 bits (364), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 99/135 (73%), Gaps = 2/135 (1%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           +KRS Y+ RVD G CNGC+IE+F  L+P FD ER G+K+V SPR AD++L TG VTR   
Sbjct: 13  LKRSVYLLRVDSGSCNGCDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTGPVTRQFL 72

Query: 94  SPALRA-WQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAAT 152
            P L+A +++AP P + ++ GAC   GGI++D Y   GG DK++PVDVYIPGCPP P A 
Sbjct: 73  -PVLKATYEAAPKPCVVVACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCPPRPHAI 131

Query: 153 LYGFAMALGLLEQKI 167
           L+G A+AL +LEQK+
Sbjct: 132 LHGVAVALDILEQKV 146


>UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A1ASR2_PELPD
          Length = 179

 Score =  144 bits (363), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 96/142 (67%), Gaps = 1/142 (0%)

Query: 26  MKASLLKKI-KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
           M  +L +K+  RS +VY  + GGCNGC+IE+   L+P +D ERFGIK+V SPRHAD++L 
Sbjct: 1   MLKNLCQKVFGRSLWVYHANSGGCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLC 60

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            G   R+      RA+ + P PK+  + G+C   GGI+HD Y V G  +K++PV+ Y+PG
Sbjct: 61  QGPAMRSTGKALQRAYAAMPGPKLVFAIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPG 120

Query: 145 CPPTPAATLYGFAMALGLLEQK 166
           CPP P A ++G A+A GL+++K
Sbjct: 121 CPPRPEAIIWGVAVAAGLVDKK 142


>UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase small subunit n=13
           Tax=cellular organisms RepID=B6YU96_THEON
          Length = 175

 Score =  143 bits (360), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 96/166 (57%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           P D N      +  E +    A L + I RS +V+ V+ G CNGC+IEI A L+P +DAE
Sbjct: 6   PADQNRTNGTTSEREMLEKRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAE 65

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           RFG+K+V SPRHAD+LL TG VT          ++  PDPKI I+ G+C   G +F++  
Sbjct: 66  RFGVKLVGSPRHADVLLVTGPVTDQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVFYESP 125

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
                   I+PVDVY+PGCPP P A LYG  +AL  L + +    P
Sbjct: 126 FTNAPLSNIIPVDVYVPGCPPRPEAILYGVVLALEKLAKILKGEVP 171


>UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID=B6IT61_RHOCS
          Length = 196

 Score =  141 bits (356), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 4   LLGPRDANG-IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           L GPR   G  P   TV+     +  +  +++ RS  + +VD G CN CE+EI A  +P+
Sbjct: 10  LKGPRTIAGPAPADATVEALARRLDTASRRRLGRSLAIRQVDAGSCNACEMEIHALNNPV 69

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +D ERFG   V SPRHAD+LL TG VT  MR   L+ W++ PDPK  ++ G C   GG F
Sbjct: 70  YDLERFGFSFVASPRHADVLLVTGPVTTNMREALLKTWEATPDPKWVVALGQCAIDGGPF 129

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
            D Y V GG +K+VPVD+ IPGCPP P   L   
Sbjct: 130 ADSYAVVGGVEKVVPVDLMIPGCPPRPVDILAAL 163


>UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774
           RepID=B8J1E3_DESDA
          Length = 185

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 11/160 (6%)

Query: 32  KKIKRS----AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGA 87
           K IKRS     ++   DCG CNGC+IE+ A L+P++D ERFG+    +P+HAD+LL TG 
Sbjct: 6   KMIKRSRLKSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVNAGNPKHADVLLVTGT 65

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 147
           V    R    + ++  P PK  IS GAC  SGG+F D Y V  G   ++PVDV++PGCPP
Sbjct: 66  VNHRNRHVLKQIYEQMPSPKAVISLGACNLSGGVFKDTYNVLNGAHNVIPVDVFVPGCPP 125

Query: 148 TPAATLYGFAMALGLLEQKI-------HARGPGELDEQPA 180
            P A + G   ALG+L+ K+           PG+ D  PA
Sbjct: 126 KPEAIIDGVVEALGVLKAKMGMGPVPQATFMPGDEDGTPA 165


>UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IG01_9CLOT
          Length = 266

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 84/138 (60%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           +   + KK  RS  +  VD G CNGC+ EI A   P  D ERFGI  V SPRHAD+LL T
Sbjct: 129 LNEKVAKKFGRSLNIREVDAGSCNGCDYEIQALNGPYNDIERFGIHFVASPRHADMLLVT 188

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G V+R M    ++ + + P PK+ ++ GAC  SGG+F D Y    G D I+PVDVYIPGC
Sbjct: 189 GCVSRNMEEALVKTYNATPSPKLVVAAGACACSGGLFKDSYAGRNGIDTILPVDVYIPGC 248

Query: 146 PPTPAATLYGFAMALGLL 163
           PP P A +YG    +G L
Sbjct: 249 PPRPQALIYGILKGIGRL 266


>UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=3
           Tax=cellular organisms RepID=B6YT72_THEON
          Length = 266

 Score =  137 bits (344), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 34/230 (14%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S +V+ VD G CNGC+IEI   L+P +DAER GIK+VPSPRHAD LL +G +TR     
Sbjct: 5   KSVWVFHVDSGSCNGCDIEILDVLTPYYDAERLGIKLVPSPRHADALLVSGPLTRQTYYA 64

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCVWG-----GTDKI----VPV------- 138
              A+++  P P+I ++ G C +SGGIF++ Y ++      G+D++    + V       
Sbjct: 65  VKAAYEAMPPKPRIVVAIGTCASSGGIFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGK 124

Query: 139 --DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGEL---DEQPAEILHGDMVQPLRV 193
             D+YIPGCPP+P   LYG A  LGL E+K+     GE    DE    +    + + + +
Sbjct: 125 KPDMYIPGCPPSPEEILYGLAQLLGLKEKKMK----GEYYYADEIEFVLPERPIEERIYL 180

Query: 194 KVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEN-DPRLNEIV 242
            +    RR+ GY    ++ +D++  + + +       E+EN   RL+E+V
Sbjct: 181 TLRESLRRVVGYFDREKVLEDFMALVEKAQ-------ESENPRERLHELV 223


>UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=54 Tax=cellular
           organisms RepID=B2A054_OPITP
          Length = 338

 Score =  136 bits (342), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 84/133 (63%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           +++S ++   D   CNGC+IE  A L+PL+D ER G+    +P+HADI L TGAV    +
Sbjct: 4   LRKSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVINTGNPKHADIFLVTGAVNEQSK 63

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
                 +   P+PK+ ++ G C +SGGIF D Y + GG D+++PVDVY+PGC   P A +
Sbjct: 64  EVIRNIYHQLPEPKVVVAIGVCASSGGIFRDCYNIAGGVDRVIPVDVYVPGCAARPEAII 123

Query: 154 YGFAMALGLLEQK 166
            G   ALG+LE+K
Sbjct: 124 DGVVQALGVLERK 136


>UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A9KS72_CLOPH
          Length = 144

 Score =  136 bits (342), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 87/136 (63%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +K +K+S ++   D   CNGC+IE+ A L+PL+D ERFGI    +P+HADILL TG+V  
Sbjct: 1   MKFVKKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADILLITGSVNE 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
                  + ++   +PKI ++ G C NSGGIF + Y V GG DK++PVDVY+PGC   P 
Sbjct: 61  QNIPVVKQIYEQMAEPKIVVAVGICANSGGIFAECYNVSGGVDKVLPVDVYVPGCAARPE 120

Query: 151 ATLYGFAMALGLLEQK 166
           A + G    L +LE+K
Sbjct: 121 AIIDGVVKGLAILEEK 136


>UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=Desulfotomaculum
           acetoxidans DSM 771 RepID=C8W241_DESAS
          Length = 236

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 97/155 (62%), Gaps = 5/155 (3%)

Query: 13  IPVPMTVDESIASMKASLLKKIK----RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
           +PV +T   S   +  +L +KIK    RS ++  VD G CNGC+ EI +  +P++D +++
Sbjct: 83  VPV-LTAPASAEDLGRALREKIKKICHRSLHIRYVDAGACNGCDFEINSMTNPVYDIQQY 141

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           G+  V SPRHAD+LL TG VTR +     + +++ P P + ++ GAC   GG+F + Y  
Sbjct: 142 GVDFVASPRHADMLLVTGVVTRNLEIALHKTYEACPRPALVVAVGACACGGGVFKEAYAS 201

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            GG DK +PVDVY+PGCPPTPA  + G   A+G L
Sbjct: 202 GGGVDKFLPVDVYVPGCPPTPAQIIKGILTAIGRL 236


>UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=A6UVJ5_META3
          Length = 246

 Score =  133 bits (335), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 84/140 (60%)

Query: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
           T+ E   S   S+ K   +S Y+  V  GGCN C+ +I    +P++D  RFGIK V SPR
Sbjct: 103 TLKEPDTSSLKSIKKLFGKSVYLREVCAGGCNACDADINVLNTPVYDLSRFGIKFVASPR 162

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
           HAD L+ TG VT+ M    ++ + + P PK  I+ G C  SGGIF +   V GG DKI+P
Sbjct: 163 HADGLVITGPVTKNMELALMKTYDATPSPKFVIAVGTCAISGGIFRENEEVVGGVDKILP 222

Query: 138 VDVYIPGCPPTPAATLYGFA 157
           VD+YIPGCPP P   LY F 
Sbjct: 223 VDLYIPGCPPHPFTNLYAFV 242


>UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit n=4 Tax=Archaea
           RepID=B6YWP9_THEON
          Length = 191

 Score =  133 bits (334), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 63/144 (43%), Positives = 88/144 (61%), Gaps = 11/144 (7%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           +K S +V+ ++ G CNGC+IEI    +P  D ER GIK+V SPRHAD + FTG +TR   
Sbjct: 2   VKNSLWVFHLNSGSCNGCDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECL 61

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV-----------PVDVYI 142
              + A ++ P+PK+ ++ GAC   GGI++D Y V GG  ++            P  V+I
Sbjct: 62  PKVIDALKAVPEPKVVLAIGACACGGGIWYDTYSVIGGVKELYRILKEEYNMEPPATVFI 121

Query: 143 PGCPPTPAATLYGFAMALGLLEQK 166
           PGCPP P A +YG A+A G+LE K
Sbjct: 122 PGCPPKPEAIIYGVAVASGMLESK 145


>UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteobacteria
           RepID=B9L8U0_NAUPA
          Length = 164

 Score =  130 bits (328), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 85/136 (62%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           K+S ++   + GGCNGC+IEI A L+P +D ERFG+    +P+ +DILL TG VT+  R 
Sbjct: 9   KKSPWILHYNTGGCNGCDIEILAALAPKYDIERFGMLNRGNPKQSDILLVTGPVTKRCRD 68

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
              R +   P+PK+ ++ GAC + GGIF D Y V  G D I+PVDV+IPGC P   A + 
Sbjct: 69  VLRRLYLEMPEPKVVVAMGACAHGGGIFRDFYHVENGVDNIIPVDVWIPGCAPRVEAVID 128

Query: 155 GFAMALGLLEQKIHAR 170
           G   A+ + E+K   +
Sbjct: 129 GMVEAVKIWEKKTKEK 144


>UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=9 Tax=Bacteria
           RepID=B2IID4_BEII9
          Length = 177

 Score =  129 bits (323), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 85/143 (59%), Gaps = 5/143 (3%)

Query: 19  VDESIASMKASL----LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            D  IA++ A L      ++ RS  +  VD G CNGCE+EI A  +  +D ERFG++ V 
Sbjct: 20  TDGEIAALAAELDHLARSRLGRSLAIREVDAGSCNGCELEINALGNAFYDLERFGLRFVA 79

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY-CVWGGTD 133
           SPRHAD+LL TG VT  MR   LR + + P+PK  ++ G C    G+F + Y C  GG  
Sbjct: 80  SPRHADVLLVTGPVTHNMREALLRTYDATPNPKWVVAAGTCALGEGVFAESYACQKGGVS 139

Query: 134 KIVPVDVYIPGCPPTPAATLYGF 156
            ++ VD+YIPGCPPTP   L G 
Sbjct: 140 AVIAVDLYIPGCPPTPTDLLKGL 162


>UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NUN9_HALUD
          Length = 183

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 3/151 (1%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            RS ++  ++CG CNGC+IE    L P +D ERFGI+   +PRHAD+L+ TG VT+ M  
Sbjct: 10  NRSPWILHMNCGSCNGCDIETLDALMPRYDVERFGIQQKDTPRHADVLVATGPVTKQMAP 69

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
              R ++  P+PK+ I+ G+C  +GG+F D Y    G D ++PVD+Y+PGCP +P   + 
Sbjct: 70  RLERIYEQMPEPKLVIAAGSCAATGGVFQDCYNCHEGIDDVIPVDMYVPGCPISPETLID 129

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHG 185
           G    + LLE+         L     EI+ G
Sbjct: 130 GI---VALLEEAGQEAKAERLAAAKPEIVQG 157


>UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=1 Tax=uncultured
           methanogenic archaeon RC-I RepID=Q0W6T1_UNCMA
          Length = 135

 Score =  126 bits (317), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 83/132 (62%), Gaps = 2/132 (1%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +  IKRS +VY    GGC GC+IE+ A++ P +D ER G+++VPSPR+AD+LL TG V  
Sbjct: 1   MNMIKRSPWVYHAHAGGCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPL 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHD--LYCVWGGTDKIVPVDVYIPGCPPT 148
             +    R +   P+PK  I+ GACG S G+F D   Y + G  DKI+PVDV IPGCPP 
Sbjct: 61  HTKPFLERVYAQTPEPKRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPK 120

Query: 149 PAATLYGFAMAL 160
           P A + G    L
Sbjct: 121 PEAIMEGIIKVL 132


>UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           carboxidivorans P7 RepID=C6PUG1_9CLOT
          Length = 242

 Score =  125 bits (315), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 86/141 (60%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           +K  +  K KRS  +  VD G CNGC +E+  T +  +D  R+GIK   SPRHAD ++ T
Sbjct: 102 VKEKIYSKFKRSLVLRSVDTGSCNGCMMEVSNTQNTYYDLSRYGIKFAASPRHADGIVVT 161

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G VT  M+   ++ + +  DPKI I+ G+C  SGGIF D Y V    ++I+ V++ IPGC
Sbjct: 162 GPVTLNMKEALIKTYDAISDPKIVIAVGSCAYSGGIFKDGYSVCEDLNEILKVNLVIPGC 221

Query: 146 PPTPAATLYGFAMALGLLEQK 166
           PP+P A LYG    +  L+++
Sbjct: 222 PPSPQAILYGMLKIINKLDEE 242


>UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Proteobacteria RepID=Q12F15_POLSJ
          Length = 181

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 89/159 (55%), Gaps = 7/159 (4%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADI 81
           +I  +   +L  + ++  +  VD G CNGCE+EI A  +P ++ E  GIK V SPRHAD+
Sbjct: 28  AIERIHRDILLILGQALTIRAVDAGSCNGCELEIHALNNPYYNIEGLGIKFVASPRHADM 87

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           LL TG V+R M     R + + P+PK+ ++ G CG +GGIF D Y   G    ++PVDV 
Sbjct: 88  LLVTGPVSRHMDEALRRTYDATPEPKLVVAVGDCGCTGGIFGDSYASCGRVANVIPVDVT 147

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           +PGCPP P   L G   A       +  R PG   + PA
Sbjct: 148 VPGCPPPPIEILRGILTA-------VRQRRPGTAGDNPA 179


>UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=1
           Tax=Thermococcus onnurineus NA1 RepID=B6YTX0_THEON
          Length = 273

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 118/217 (54%), Gaps = 29/217 (13%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS +V+ ++ G CNGC+IEI   L+P +D ERFGIK+V SPRHA  LL +G +TR     
Sbjct: 8   RSIWVFHLNTGSCNGCDIEIIDVLTPFYDVERFGIKLVGSPRHAHALLVSGPLTRQAYYG 67

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCVW---------------GGT------- 132
           A    ++  P+P++ ++ G C  SGGIF++ Y V+               GG        
Sbjct: 68  AKETIKAMPPEPRVIVAIGTCTCSGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADL 127

Query: 133 ----DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMV 188
               +K+ PV +YIPGCPP P   +YG A  +GL+E+K+  +   + +  P ++  G + 
Sbjct: 128 RDEGEKVGPV-IYIPGCPPRPEEIIYGIAQLVGLVEKKLSYQEYSD-ELVPFKLPEGPLE 185

Query: 189 QPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQ 225
           + +R+ +    R L GY    +I +D++  + + E+ 
Sbjct: 186 ERIRLTLMERLRHLVGYLDREKILEDFMGLVKEAEKS 222


>UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 Tax=Thermococcus
           RepID=C5A2Q7_THEGJ
          Length = 283

 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 117/215 (54%), Gaps = 30/215 (13%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS YV+ +D G CNGCEIE+F  L+P +DAER G+++  SPRHA  +  TG +TR     
Sbjct: 4   RSLYVFHLDTGACNGCEIELFDILTPYYDAERLGVRLAASPRHAHAMAATGPLTRQAYYA 63

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCVW---------------GGTDKIV--- 136
           A  A ++  P P+I ++ G C  SGGIF++ Y ++               GG  ++V   
Sbjct: 64  AKEAIKAMPPKPRIIVAIGTCACSGGIFYNGYPIYRRPESGREGQEYPRRGGIFELVQDL 123

Query: 137 --------PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMV 188
                   PV VYIPGCPP P   LYG A+ALGL+E+++  +G    +E   E+    + 
Sbjct: 124 RDEGEYVGPV-VYIPGCPPRPEEILYGVALALGLVEKQV--KGEYYTEEVGFELPEYPIE 180

Query: 189 QPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGE 223
           + +R+ +    + + GY    ++ +D++  + + +
Sbjct: 181 ERIRLSLRERLKYVVGYFDREKVLEDFMELVAKAK 215


>UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
           ATCC 25986 RepID=A4EBM2_9ACTN
          Length = 195

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 83/135 (61%), Gaps = 2/135 (1%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
           K+ RS +V   D   CNGC+IE+ A+L+PLFDAERFG+    +P+HADI L TG+V  A 
Sbjct: 4   KMSRSPWVIHYDGSSCNGCDIEVLASLTPLFDAERFGVVNTGNPKHADIFLVTGSV-NAQ 62

Query: 93  RSPALRA-WQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
             P +R  +    +PK  ++ G C  SGG+F D Y V GG D+ +PVDVY PGC   P  
Sbjct: 63  NLPVVRQIYNQMLEPKCVVACGICACSGGVFRDAYNVIGGVDRAIPVDVYAPGCAIRPET 122

Query: 152 TLYGFAMALGLLEQK 166
            +     A G+L+QK
Sbjct: 123 VIDAIVEACGILDQK 137


>UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW47_ACICJ
          Length = 264

 Score =  122 bits (307), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 83/138 (60%), Gaps = 1/138 (0%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           +  +RS +V  VD G CNGCE E+ A  +P ++  R GI   PSPR AD+LL TG VTRA
Sbjct: 122 RGFRRSLHVRHVDAGSCNGCESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRA 181

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M  P  R W++ P P+  ++ G C  SGGI     C+  G ++ +PVD+Y+PGCPP PAA
Sbjct: 182 MLEPLRRTWEAMPAPRWVMASGTCAVSGGIAPGGPCL-SGLEEALPVDLYLPGCPPNPAA 240

Query: 152 TLYGFAMALGLLEQKIHA 169
            +    M LG   Q++  
Sbjct: 241 IIEALLMFLGRRAQRVRG 258


>UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Aquificales
           RepID=B2V8R1_SULSY
          Length = 173

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 7/155 (4%)

Query: 20  DESIASMKASLLKKIKR----SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS 75
           DE++  +   L +KI +    S  +  VD G CN CE EI A  +P +D ERFG+K V S
Sbjct: 22  DENVEILGKQLKEKIDKYFQGSFAIREVDSGSCNACEYEISALSNPYYDIERFGVKFVAS 81

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           P+HAD ++ TG +TR M    ++A+++ P+PK  I+ G C   GG F   Y V  G    
Sbjct: 82  PKHADAIMITGCLTRNMYEAVMKAYENVPNPKFIIAVGDCALDGGTFKGSYAVMDGIKDK 141

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           +P+D++I GCPP P   + G    L LL +K   R
Sbjct: 142 LPIDIWIKGCPPEPIDIISGL---LILLNKKFEDR 173


>UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarchaeota
           RepID=Y516_METJA
          Length = 148

 Score =  121 bits (303), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 79/119 (66%), Gaps = 1/119 (0%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           KRS +V  V+ GGCNGC+IEI A L+P +D E++GI V  +PR AD+LL TG VT     
Sbjct: 8   KRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAE 67

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
                ++  P+PKI ++ GAC  SGGIF + + V GG DK++PVD  IPGCPP P+  +
Sbjct: 68  RLKEIYEKTPEPKIVVAVGACALSGGIFKEGHVV-GGVDKVIPVDAKIPGCPPRPSEII 125


>UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfitobacterium
           hafniense RepID=Q24ST9_DESHY
          Length = 155

 Score =  121 bits (303), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 80/123 (65%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           L+ +++S ++  +DCG CNGC+ E+ A L+P++D +RFG+  V SPRHADIL+ TG ++ 
Sbjct: 26  LRSLRQSWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMST 85

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
            +   AL  ++  P+PK  I+ G C   GG+F + Y    G  + +PVD+ IPGCPP+P 
Sbjct: 86  HLIQAALATYEGTPNPKRIIAVGDCALDGGMFKEAYAAHNGVGEALPVDIKIPGCPPSPD 145

Query: 151 ATL 153
             L
Sbjct: 146 ELL 148


>UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Proteobacteria RepID=D0L1N9_HALNC
          Length = 274

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 89/160 (55%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
           D + +  P T D+ +       L    RS ++  VD G CNGCE EI A L+P ++  R 
Sbjct: 109 DLSRLARPATPDKKLEEKWQKSLAGFGRSLHIRHVDAGSCNGCESEISALLNPFYNLHRL 168

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           G+   PSPR AD+LL TG VT  MR P LR +++ P+P+  ++ G C   GG     Y  
Sbjct: 169 GVFFTPSPRFADLLLVTGPVTEVMREPLLRTFEAMPEPRWVMALGTCATGGGTNGGGYAC 228

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
             G D I+PVD+++PGCPP PAA +    + L    Q++H
Sbjct: 229 HQGLDGILPVDIWLPGCPPNPAAIIEALLVLLDRRPQQVH 268


>UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=C5CEV5_KOSOT
          Length = 137

 Score =  117 bits (293), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 77/132 (58%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           K +KRS +V+ V    CN C+IEI   L+P +D ERFGIK+V S RHAD+LL TG     
Sbjct: 6   KILKRSLWVFHVSASPCNNCDIEILDMLTPRYDLERFGIKLVGSVRHADVLLVTGMGGCK 65

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           +    +R +  AP P   I+ G C  +G  F + Y   G  D+ VPVD+YIPGCPP P  
Sbjct: 66  VSERVIRIYNQAPKPVFVIAVGTCPVAGATFKESYTRCGPLDRFVPVDLYIPGCPPKPET 125

Query: 152 TLYGFAMALGLL 163
            + G +  LG L
Sbjct: 126 MIAGLSELLGRL 137


>UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteria
           RepID=Q2T5T7_BURTA
          Length = 174

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 80/135 (59%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           ++  +L  + R+  +  +D G CNGCE+E+ A  +P ++ E  GIK V SPRHAD+LL T
Sbjct: 32  IRQEILDILGRALCIRAIDAGSCNGCELELNALGNPYYNIEGLGIKFVASPRHADMLLIT 91

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G +T  MR     A+ + P PK+ ++ G C  +GG+F   Y V G  + +VPVDV I GC
Sbjct: 92  GPLTLNMRDAVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPVETLVPVDVAIAGC 151

Query: 146 PPTPAATLYGFAMAL 160
           PP P   L G   AL
Sbjct: 152 PPRPIDLLRGIRGAL 166


>UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Actinomycetales RepID=A1SQ82_NOCSJ
          Length = 162

 Score =  113 bits (283), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 73/122 (59%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
            ++  S  +  VD G CNGCEIE+     P++DAER+G ++V SPRHAD++L TG VT  
Sbjct: 32  TELAGSVQIRHVDAGSCNGCEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHN 91

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M  P  R  ++ P P++ ++ G C  + G F   Y V G     V VD+ +PGCPP PAA
Sbjct: 92  MLEPLRRTVEATPRPRLVLAVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAA 151

Query: 152 TL 153
            +
Sbjct: 152 IV 153


>UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GAA3_9ACTN
          Length = 228

 Score =  110 bits (274), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 77/139 (55%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S ++   D   CNGC+IE+  ++ PL+D ERFGI    +P+HADI L TG+V       
Sbjct: 6   KSPWLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINTGNPKHADIFLVTGSVNAQNIEV 65

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
               +    +PK+ ++ G C  +GG+F D Y V GG DK +PVDVY PGC   P   +  
Sbjct: 66  VRHIYDQMLEPKVVVACGICACTGGVFRDCYNVIGGVDKAIPVDVYAPGCAVRPETIIDA 125

Query: 156 FAMALGLLEQKIHARGPGE 174
              A+ +L++K      G+
Sbjct: 126 VLKAVEILDEKAKLMAAGK 144


>UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Geobacter
           metallireducens GS-15 RepID=Q39SF9_GEOMG
          Length = 244

 Score =  109 bits (272), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 76/139 (54%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           +   L +   RS     V  GGCN CE +     +  +D  RFGI+ V SPRHAD L  T
Sbjct: 105 LPPDLRRLFGRSLKFREVSAGGCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVT 164

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G VT  M    L  +++ PDPKI ++ GAC  +GG + D   V  G D IVPVD+YIPGC
Sbjct: 165 GPVTEHMAKALLTTYEAIPDPKIVVACGACAINGGPYIDTPQVCNGVDSIVPVDLYIPGC 224

Query: 146 PPTPAATLYGFAMALGLLE 164
           PP PA  L G    L  ++
Sbjct: 225 PPHPATILDGLLRILNKIK 243


>UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=Acetobacter
           pasteurianus RepID=C7JEU9_ACEP3
          Length = 165

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 72/122 (59%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRA 99
           ++ VD GGC GC +E+ A     +D E  G   V SPR+AD+LL TGA+TRAM      A
Sbjct: 30  LFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPVLEAA 89

Query: 100 WQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
           WQ+ P PK  I+ G+C   GG+F + Y V GG ++ V +D+ IPGCPP P   L G    
Sbjct: 90  WQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNGLCSL 149

Query: 160 LG 161
            G
Sbjct: 150 FG 151


>UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=cellular
           organisms RepID=A7I7C9_METB6
          Length = 172

 Score =  108 bits (269), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 84/160 (52%), Gaps = 7/160 (4%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIK----RSAYVYRVDCGGCNGCEIEIF 56
           +S +LG +    +PV    DE +  +   + ++I     RS  +  +D G  N  EIEI 
Sbjct: 5   VSCMLGKKVTGPLPVR---DEELERIGREIRREINARFGRSLAIRELDAGSDNAAEIEIN 61

Query: 57  ATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACG 116
              +  +D ERFGI  V SPRHAD+LL TGA+T  M   A + + + P PK  ++ G   
Sbjct: 62  NLSNAYYDVERFGISFVASPRHADVLLVTGAITCNMAIAAQKTYDAMPSPKFVVAVGDDA 121

Query: 117 NSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
             GGI+   Y V GG D I PVD+ IPG PP P   L G 
Sbjct: 122 CDGGIYKGTYAVLGGADAIFPVDLKIPGNPPAPIQILTGL 161


>UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=57 Tax=cellular organisms
           RepID=NDUS7_MOUSE
          Length = 224

 Score =  107 bits (268), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 69/111 (62%), Gaps = 2/111 (1%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPD 105
           G   C +E+    +P +D +RFG+    SPR AD+++  G +T  M +PALR  +   P+
Sbjct: 96  GLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKM-APALRKVYDQMPE 154

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
           P+  +S G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG 
Sbjct: 155 PRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI 205


>UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=13 Tax=Bacteria
           RepID=B5E8B5_GEOBB
          Length = 332

 Score =  107 bits (268), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 75/124 (60%), Gaps = 1/124 (0%)

Query: 40  VYRVDCGGCNGCEIEIFATLS-PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR 98
           ++R++ G CNGC++E+  T +   FD E+ G +    P  ADILL TG +T   R+ ALR
Sbjct: 15  LFRINTGSCNGCDVELAVTAAVDEFDVEQLGCRYTEEPHEADILLITGPLTVRARNEALR 74

Query: 99  AWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
            +  AP+ K+ ++ G C  SGG+F D Y V G   + +PVD+ +PGCPP P A L G A 
Sbjct: 75  LYAEAPETKVTVAVGVCPVSGGVFRDSYAVDGPVQRYLPVDLNVPGCPPRPQALLAGIAQ 134

Query: 159 ALGL 162
           A  L
Sbjct: 135 ARDL 138


>UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteriaceae
           RepID=B2N3C8_ECOLX
          Length = 124

 Score =  106 bits (265), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 75/118 (63%), Gaps = 8/118 (6%)

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHA---RGPGELDEQPAEILHGDMVQPLRVK 194
           +DV+IPGCPPTPAAT++GFA+ALGLL+QKIHA   R P  +  QP   L   +    R+ 
Sbjct: 6   IDVWIPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQP---LWPQIPPSQRIA 62

Query: 195 VDREARRLAGYRYGRQIADDYLTQLGQGE--EQVARWLEAENDPRLNEIVSHLNHVVE 250
           ++REARRLAGYR GR+I D  L  L       +V  WL   +DPRLN IV  L  V+ 
Sbjct: 63  IEREARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLRDADDPRLNSIVQQLFRVLR 120


>UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=638 Tax=cellular organisms
           RepID=NDUS7_HUMAN
          Length = 213

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 69/111 (62%), Gaps = 2/111 (1%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPD 105
           G   C +E+    +P +D +RFG+    SPR +D+++  G +T  M +PALR  +   P+
Sbjct: 85  GLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKM-APALRKVYDQMPE 143

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
           P+  +S G+C N GG +H  Y V  G D+IVPVD+YIPGCPPT  A LYG 
Sbjct: 144 PRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGI 194


>UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Desulfovibrio
           RepID=B8IYV4_DESDA
          Length = 254

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 73/125 (58%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            +RS  + +V   GCN CE +     + +FD  RFGI  V SPRHAD ++ TG V+  MR
Sbjct: 127 FRRSLKLRQVSAAGCNACEADCNVLGTLVFDLPRFGIDFVASPRHADGIVLTGPVSENMR 186

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
             A+  + + P+P++ ++ GAC  SGG+F D      G   I+PVD+++PGCPP P   L
Sbjct: 187 LAAIDTYNATPEPRLVVAVGACAISGGLFRDAPQCNNGIADILPVDLFVPGCPPNPWTIL 246

Query: 154 YGFAM 158
            G  M
Sbjct: 247 DGLLM 251


>UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=Proteobacteria
           RepID=NUOB2_RHOS1
          Length = 205

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 6/122 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPS-PRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G + C +E+   L+P++D  RFG +V+ S PR AD+L+ +G V R M  P  R +    +
Sbjct: 44  GLSCCYVEMATALTPVYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMRE 103

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           P+  IS GAC NSGG++ D+Y V  G D  +PVDVY+PGCPP P A +     AL LL+ 
Sbjct: 104 PRWVISMGACANSGGMY-DIYSVVQGVDSFLPVDVYVPGCPPRPEALME----ALVLLQS 158

Query: 166 KI 167
           KI
Sbjct: 159 KI 160


>UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_HELMI
          Length = 175

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 68/111 (61%), Gaps = 1/111 (0%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+ AT +  FD  RFG +V  PSPR AD+++  G +T  M     R ++  P+
Sbjct: 46  GLACCAIEMMATGASRFDMARFGYEVFRPSPRQADLIIIAGTLTWKMAPAIQRVYEQMPE 105

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
           PK  I+ G+C  +GG F D Y V  G DK++PVDVY+PGCPP P A L GF
Sbjct: 106 PKWIIAMGSCACTGGPFADSYAVVPGVDKVIPVDVYVPGCPPRPEALLDGF 156


>UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax=Bacteria
           RepID=NUOB1_ROSS1
          Length = 268

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 5/125 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+ AT    FD  RFG ++   SPR AD+++  G VT+ M    +R +   P+
Sbjct: 39  GLACCAIEMMATGLARFDLARFGAEMFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPE 98

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           P+  IS GAC  SGG F D Y V  G D ++PVDVYIPGCPP P A L+    AL  L++
Sbjct: 99  PRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLH----ALMTLQK 154

Query: 166 KIHAR 170
           +I A+
Sbjct: 155 QIDAQ 159


>UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Eukaryota
           RepID=NDUS7_RECAM
          Length = 182

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 75/122 (61%), Gaps = 6/122 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPD 105
           G   C +E+  + +  +D +RFGI   PSPR +D+++  G +T  M +PALR  +    +
Sbjct: 54  GLACCAVEMMHSAASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKM-APALRKVYDQMSE 112

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           P+  +S G+C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG    L  L++
Sbjct: 113 PRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG----LLQLQK 168

Query: 166 KI 167
           KI
Sbjct: 169 KI 170


>UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=cellular organisms
           RepID=NUOB_GRABC
          Length = 194

 Score =  103 bits (256), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 4/125 (3%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106
           G   C +E+     P +D +RFG+    SPR +D+++  G +T  M     R +   P+P
Sbjct: 69  GLACCAVEMIHAYMPRYDLDRFGVIPRASPRQSDVMIVAGTLTNKMAPALRRVYDQMPEP 128

Query: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
           +  IS G+C N GG +H  Y V  G D+IVPVDVY+PGCPPT  A +YG       L++K
Sbjct: 129 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGIMQ----LQKK 184

Query: 167 IHARG 171
           I   G
Sbjct: 185 IRRTG 189


>UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Sulfurospirillum deleyianum DSM 6946
           RepID=D1B297_SULD5
          Length = 138

 Score =  102 bits (255), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 78/139 (56%), Gaps = 3/139 (2%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFAT-LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
           +  + YVYR++ G CNGC++EI A+ L P F  +  G      P  A+ILL TGA+T A 
Sbjct: 1   MNDTLYVYRINTGSCNGCDVEILASVLLPKFGFDALGCVYTNDPTLANILLVTGAIT-AR 59

Query: 93  RSPALRA-WQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
            +P L+A  +  P  KI ++ G C  SGG+F D Y + G  D  V VDV I GCPP+P  
Sbjct: 60  STPYLQAALKQLPSKKIVVALGICPISGGVFRDSYAITGPLDTFVDVDVNISGCPPSPKE 119

Query: 152 TLYGFAMALGLLEQKIHAR 170
              G A A  L  ++ HA 
Sbjct: 120 IAQGLAQACELWRERYHAH 138


>UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Ajellomyces
           dermatitidis RepID=C5GDP9_AJEDR
          Length = 245

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 2/113 (1%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPD 105
           G   C +E+ A   P +D +R G     SPR +D+L+  G VT  M +PALR  +   PD
Sbjct: 116 GLACCGLEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKM-APALRLVYDQMPD 174

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
           PK  IS G+C N GG +H  Y V  G D+++PVDVY+PGCPPT  A +Y  ++
Sbjct: 175 PKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISV 227


>UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meiothermus silvanus
           DSM 9946 RepID=C1XWY8_9DEIN
          Length = 290

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 3/144 (2%)

Query: 43  VDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS 102
           V  G     + E+    +P  D  RFG  VV SPRHAD LL TG V++ MR    R +Q+
Sbjct: 133 VSAGNTGLDDTEVALAGNPFHDMSRFGFSVVASPRHADALLVTGPVSQNMREALWRTYQA 192

Query: 103 APDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
            P+PK  ++ G     G IF +   V GG D++VPVDVY+PG P  PA+ L+G  +  G 
Sbjct: 193 TPEPKGVVAVGNEAIGGEIFAESAAVVGGVDQVVPVDVYVPGSPARPASILHGLLLLSGQ 252

Query: 163 LEQKIHARGPGELDEQPAEILHGD 186
            +Q +     G L E+  +++  +
Sbjct: 253 TQQVLVG---GRLHEERTQVVSSE 273


>UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=2
           Tax=Gluconacetobacter diazotrophicus PAl 5
           RepID=B5ZJ00_GLUDA
          Length = 166

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 71/126 (56%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            R   V+ V+ GGC GC +E+ A     +     GI  V +PR A++LL TG +TRAM  
Sbjct: 22  ARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAP 81

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
               AW + P+P+  ++ GAC   GG F + Y V GG +    +D+ +PGCPP+PAA L 
Sbjct: 82  VLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDMTVPGCPPSPAAILA 141

Query: 155 GFAMAL 160
           G A  L
Sbjct: 142 GLARVL 147


>UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=Myxococcales
           RepID=NUOB2_SORC5
          Length = 182

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 80/149 (53%), Gaps = 9/149 (6%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCG-GCNGCEIEIFATLSPLFDAER 67
           D  G+ +  +VD+++     + L    RS  V+ +  G  C  C IE+  T  P  D ER
Sbjct: 21  DGGGV-ITTSVDQTV-----NWLLNWGRSNSVWYMLFGLAC--CAIELMQTGGPRGDLER 72

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
           FG    PSPR +D+ +  G +T  M +   R +    +P+  IS G+C N GG+F   Y 
Sbjct: 73  FGAAPRPSPRSSDLFIIAGTLTYKMATRVKRLYDQMSEPRFVISMGSCSNCGGLFQYAYS 132

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
           V  G D+I+PVDVY+PGCPP P A L G 
Sbjct: 133 VCKGVDQIIPVDVYVPGCPPRPEALLEGL 161


>UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular
           organisms RepID=NUBCD_PELCD
          Length = 794

 Score =  100 bits (250), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 6/122 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G + C +E+  +++P FD  RFG +V+  +PR AD+++  G   + M +  LR ++   +
Sbjct: 32  GLSCCFVEMMGSMTPRFDLARFGAEVLRGTPREADLMVIAGTPFKKMAASMLRVYEEMAN 91

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  I+ G+C NSGG++ D+Y V  G ++++PVDVYIPGCPP P A    F   L  L++
Sbjct: 92  PKWVIAMGSCANSGGMY-DVYSVMQGVNQVLPVDVYIPGCPPRPEA----FMQGLMTLQE 146

Query: 166 KI 167
           KI
Sbjct: 147 KI 148


>UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Euryarchaeota
           RepID=C5U7Y6_9EURY
          Length = 154

 Score =  100 bits (249), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 87/147 (59%), Gaps = 10/147 (6%)

Query: 30  LLKKI--KRSAYVYRVDCGGCNGCEIE-IFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
           L+KKI  K+  +V  V  GGCNGC+IE + A  SP +DAE++ + +  +PR  DIL+ +G
Sbjct: 8   LMKKISRKKCIHVMLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTFNPRETDILIVSG 67

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL-------YCVWGGTDKIVPVD 139
            VT+ ++    + ++  P+PK  ++ G+C  +GG++ ++         V G  + I+PVD
Sbjct: 68  CVTKFVKESLRKIYEKIPEPKAVVAIGSCALTGGVYKNIGGDLGTSDFVAGPVENIIPVD 127

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQK 166
           V +PGC P P   + G   A+ L+ ++
Sbjct: 128 VKVPGCAPRPEDIISGIVKAIPLVVER 154


>UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 Tax=cellular
           organisms RepID=NDHK2_CYAP4
          Length = 259

 Score =  100 bits (248), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 71/129 (55%), Gaps = 5/129 (3%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106
           G   C IE  A ++  FD ERFG+    SPR AD+++  G +T  M  P  R +   P+P
Sbjct: 49  GTACCFIEFAAMIASRFDMERFGMFPRASPRQADLIILAGTLTMQMAVPTRRLYDQMPEP 108

Query: 107 KICISYGACGNSGGIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           K  I+ GAC  +GG+F  D      G DK++P+DVYIPGCPP P A L     A+  L +
Sbjct: 109 KYVIAMGACMITGGMFSADSPTALRGADKLLPIDVYIPGCPPRPEAILD----AVTKLRK 164

Query: 166 KIHARGPGE 174
           KI    P E
Sbjct: 165 KIANESPQE 173


>UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarchaeota
           RepID=Y1363_METJA
          Length = 151

 Score = 99.8 bits (247), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 10/141 (7%)

Query: 30  LLKKI--KRSAYVYRVDCGGCNGCEIEIF-ATLSPLFDAERFGIKVVPSPRHADILLFTG 86
           ++KKI  K+  +V  V  GGCN C+IE+  A  SP +DAE++ + +  +PR ADIL+ TG
Sbjct: 4   MIKKIARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTG 63

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL-------YCVWGGTDKIVPVD 139
            VT+ +     + ++  P+PK  ++ GAC   GG++ ++         V G  + I+PVD
Sbjct: 64  CVTKVVAESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVD 123

Query: 140 VYIPGCPPTPAATLYGFAMAL 160
           V +PGC P P   + G   AL
Sbjct: 124 VKVPGCAPRPEDIIAGIVKAL 144


>UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2
           Tax=Proteobacteria RepID=Q21TB3_RHOFD
          Length = 254

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 77/138 (55%), Gaps = 2/138 (1%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           +  +L K+  RS  +  V  GGC+GCE+EI A  +  FD  R+GI +V SPRHAD L+ +
Sbjct: 116 VSKALHKRFGRSLKLRSVSAGGCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALVLS 175

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV-WGGTDKIVPVDVYIPG 144
           G +TR M       W + P+PK+ I+ GAC  SGG+F D   +     D   P  +Y+PG
Sbjct: 176 GPITRNMAQALQICWDAIPEPKLVIAVGACAISGGVFADSDALDRQFLDNFKPA-LYVPG 234

Query: 145 CPPTPAATLYGFAMALGL 162
           CP  P   + G    LG+
Sbjct: 235 CPAHPLTFISGIMDLLGI 252


>UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=NUOB1_THEYD
          Length = 199

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 1/110 (0%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106
           G   C IE+ AT +  +D +RFGI +  +PR AD+++  G VT+ M    +  +   P+P
Sbjct: 49  GLACCAIEMMATAASHYDLDRFGIIMRATPRQADVMIIAGTVTKKMAPVIVNLYHQMPEP 108

Query: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
           +  I+ G+C  SGGIF + Y    G D+I+PVDVYIPGCPP P A + G 
Sbjct: 109 RYVIAMGSCACSGGIF-NTYSTVQGVDEILPVDVYIPGCPPRPEALIEGL 157


>UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=Bacteria
           RepID=NUOB2_CHLT3
          Length = 195

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 1/124 (0%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106
           G   C IE+ AT +  +D ERFGI    SPR +D+++  G VT  M    +R ++  P+P
Sbjct: 36  GLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTFKMAERVVRLYEQMPEP 95

Query: 107 KICISYGACGNSGGIFHDL-YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           +  +S G+C N GG + +  Y V  G D+I+PVDVY+PGCPP P A + G      L+ +
Sbjct: 96  RYVLSMGSCSNCGGPYWEHGYHVVKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELIRE 155

Query: 166 KIHA 169
           +  A
Sbjct: 156 EKFA 159


>UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Epsilonproteobacteria
           RepID=A6Q6W5_SULNB
          Length = 168

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 68/132 (51%)

Query: 25  SMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
            +K ++ KK   S  +  VD G CN CE E  A  +P +D ER GI  V SPRHAD++L 
Sbjct: 30  EIKENVKKKFAGSLAIRMVDSGSCNACEAECNALSNPYYDLERLGIYFVASPRHADVMLL 89

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            G +T  M    L A++  P+PK  I+ GAC      F   + V       +PV  +IPG
Sbjct: 90  NGLMTFNMTPHVLDAYKQIPEPKWVITLGACPVMEAPFEKTFAVKAPAADHLPVAHHIPG 149

Query: 145 CPPTPAATLYGF 156
           CPP P   + G 
Sbjct: 150 CPPEPLEIIRGL 161


>UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=2 Tax=Bacteria
           RepID=UPI00016C3AA7
          Length = 201

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 6/122 (4%)

Query: 51  CEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKIC 109
           C IE+ AT S  +D  RFG + +  SPR  D+++  G V   M     R W   P+PK C
Sbjct: 37  CGIELMATASSRYDIARFGSEAMRFSPRQCDVMIVAGRVAMKMVPVMQRIWLQMPEPKWC 96

Query: 110 ISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
           IS GAC +SGG+F D Y V  G D+ +PVDVY+PGCPP P   +     A+  L++KI  
Sbjct: 97  ISMGACASSGGVF-DTYAVVQGIDRFIPVDVYVPGCPPRPEQLIR----AVLDLQEKIQK 151

Query: 170 RG 171
            G
Sbjct: 152 TG 153


>UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea RepID=A0B811_METTP
          Length = 190

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 28/188 (14%)

Query: 10  ANGIPVPMTVDESIASMK--------------------------ASLLKKIKRSAYVYRV 43
           ++ IPVP+ +DE I                               ++L   ++++  + +
Sbjct: 4   SDVIPVPVAIDEEIEKWTIWGRPVMDVWFTTTEKIHQIIQMGPIKNVLNWGRKNSLWFLM 63

Query: 44  DCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSA 103
              GC G E+ +F    P +D +RFGI    +PR AD+++ +G +TR         W+  
Sbjct: 64  QPMGCCGVEMLVFG--CPHYDCDRFGIIPRATPRQADVMIISGYITRKYLPAIKNLWEQM 121

Query: 104 PDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            +PK CI+ G C  SGG F+D Y +   T    P+DVY+PGCPP P   + GF      +
Sbjct: 122 LEPKWCIAVGECAISGGPFYDSYNIIQNTSDFFPIDVYVPGCPPRPEQFIKGFVELQEKI 181

Query: 164 EQKIHARG 171
           +Q+   RG
Sbjct: 182 KQRKDKRG 189


>UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=Bacteroidales
           RepID=NUOB_BACV8
          Length = 198

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 60/107 (56%), Gaps = 1/107 (0%)

Query: 51  CEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKIC 109
           C IE  A  +  +D  RFG +V   SPR AD+++  G +T  M     R +    DPK  
Sbjct: 63  CGIEFMAVGAARYDFARFGFEVARASPRQADMIMVAGTITHKMAPVLKRLYDQMADPKYV 122

Query: 110 ISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
           I+ G C  SGG F   Y V  G DKI+PVDVYIPGCPP P A LYG 
Sbjct: 123 IAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEALLYGM 169


>UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=Actinomycetales
           RepID=NUOB1_SALAI
          Length = 188

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 70/128 (54%), Gaps = 5/128 (3%)

Query: 47  GCNGCEIEIFATLSPLFDAERFG-IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE  AT     D  R G I     PR AD+++ +G VT  M     R +   P+
Sbjct: 29  GLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTDKMAPAIKRLYDQMPE 88

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  IS+GAC N GG + D Y V  G D+++PVDVY+PGCPP P A L+G       L++
Sbjct: 89  PKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYVPGCPPRPEALLHGILR----LQE 144

Query: 166 KIHARGPG 173
           KI A G G
Sbjct: 145 KIAAEGAG 152


>UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=Bacteria
           RepID=NUOB_RUBXD
          Length = 251

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 70/123 (56%), Gaps = 5/123 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+ +T     D ERFG      SPR AD+++ +G V+  M     R ++  P+
Sbjct: 35  GLACCAIEMMSTGMAHNDLERFGAGFFAGSPRQADVMIVSGTVSTKMAERMTRLYEQMPE 94

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  I+ GAC  SGG F D Y V  G D+++PVDVY+PGCPP P A ++G       L++
Sbjct: 95  PKWVIAMGACAISGGPFLDGYSVLMGADRVIPVDVYVPGCPPRPEALIFGIM----TLQK 150

Query: 166 KIH 168
           KI 
Sbjct: 151 KIE 153


>UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax=Bacteria
           RepID=NUOB2_STRGG
          Length = 235

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 70/132 (53%), Gaps = 4/132 (3%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG-IKVVPSPRHADILLF 84
           MK  L    + S +V+     G   C IE  A      D  R G I   P PR AD+++ 
Sbjct: 42  MKVVLNWGRRYSLWVFNF---GLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIV 98

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
           +G VT  M     R ++  P+PK  IS+GAC N GG + D Y V  G D+I+PVDVY+PG
Sbjct: 99  SGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPG 158

Query: 145 CPPTPAATLYGF 156
           CPP P A L G 
Sbjct: 159 CPPRPEALLQGI 170


>UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A8Z3_GEMAT
          Length = 212

 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 6/122 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE  AT +  FD  RFG+ ++  SPR AD+LL  G V   +     R +Q  P 
Sbjct: 49  GTACCAIEFMATAASRFDLSRFGMERLSYSPRQADVLLCAGRVPLKLAPVLRRIYQQMPQ 108

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  IS GAC ++GG+F D Y V  G D I+PVDVY+PGCPP P A ++   M    L++
Sbjct: 109 PKWVISMGACASTGGMF-DNYAVVQGIDTIIPVDVYVPGCPPRPEALMHAIIM----LQK 163

Query: 166 KI 167
           K+
Sbjct: 164 KV 165


>UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_ACIBL
          Length = 213

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 78/125 (62%), Gaps = 8/125 (6%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALR-AWQSAP 104
           G   C IE+ +  +  FD  RFG +V  PSPR +D+++  G V++ M +P +R  +   P
Sbjct: 79  GLACCAIEMMSMGASRFDIARFGAEVFRPSPRQSDLMIIAGRVSQKM-APVIRHLYLQMP 137

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           +PK  IS GAC  SGG+F++ Y +  G ++ +PVD+Y+PGCPP P   +Y    A+ LL+
Sbjct: 138 EPKWVISMGACATSGGVFNN-YALVQGVNQYIPVDIYVPGCPPRPEQLIY----AITLLQ 192

Query: 165 QKIHA 169
           +KI A
Sbjct: 193 EKIQA 197


>UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=pseudomallei group
           RepID=A5TDF9_BURMA
          Length = 293

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 1/125 (0%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106
           G   C +E+       +D +RFG+    SPR  D+++  G +T  M     R +    +P
Sbjct: 162 GLACCAVEMMHAAGARYDMDRFGMIPRASPRQCDLMIVAGTLTNKMAPAMRRVYDQMAEP 221

Query: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF-AMALGLLEQ 165
           +  +S G+C N GG +H  Y V  G D+IVPVDVY+PGCPPT  A +YG   +   + E+
Sbjct: 222 RYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLMQLQRKVAER 281

Query: 166 KIHAR 170
             H+R
Sbjct: 282 STHSR 286


>UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_CLOB8
          Length = 169

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 70/128 (54%), Gaps = 4/128 (3%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+ A     +D  RFG +V   SPR AD+++  G +T  M     + +   P+
Sbjct: 42  GLACCAIEMMAAGGARYDIARFGYEVFRASPRQADLMIVAGTITEKMAPIVKKIYDQMPE 101

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  I+ G+C  SGG F D Y V  G D  +PVDVYIPGCPP P A ++G    L L E+
Sbjct: 102 PKWVIAMGSCATSGGPFVDSYNVVPGADTFLPVDVYIPGCPPRPEALIHGL---LTLKEK 158

Query: 166 KIHARGPG 173
            IH +  G
Sbjct: 159 IIHPKEVG 166


>UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_HYDS0
          Length = 177

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 64/111 (57%), Gaps = 3/111 (2%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPD 105
           G   C IE+    +  FD +R G+    SPR AD+L+  G V   + +P L+  W   P+
Sbjct: 33  GLACCAIEMMHAAASRFDIDRLGMIFRASPRQADVLIVAGTVVNKV-APMLKLVWDQMPE 91

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
           PK CIS G C ++GG F   Y    G D+I+PVDVYIPGCPPTP   +YG 
Sbjct: 92  PKWCISMGGCASAGGPFPT-YSTLQGIDRIIPVDVYIPGCPPTPQGLIYGL 141


>UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Epsilonproteobacteria RepID=B9L626_NAUPA
          Length = 157

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 6/128 (4%)

Query: 45  CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAP 104
           C GC  C +E+ A + P +D ER+G  + P+PR ADI+  TG V++ +    LR ++  P
Sbjct: 22  CSGC--CSLEMLAAMGPRYDWERYGYIMTPTPRQADIMFITGLVSKKILPALLRTYEQMP 79

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           +P+  ++ GAC   GG ++D   V     +I+P DV++ GCPP P A + G    L  L+
Sbjct: 80  EPRYVVAIGACAYDGGPYNDSVSVIKNMTEILPADVFVAGCPPRPEAIIAG----LEELK 135

Query: 165 QKIHARGP 172
           +KI    P
Sbjct: 136 EKIKRGEP 143


>UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=Flavobacteriaceae
           RepID=C6X0Z2_FLAB3
          Length = 185

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 2/115 (1%)

Query: 51  CEIEIFATLSPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKIC 109
           C IE  A L+P +DA RFG+ +   SPR AD+L+  G +++ +     + +    +P+  
Sbjct: 50  CGIEFMAVLNPTYDASRFGMERNSFSPRQADMLMVCGTISKKLGPVLKQVYTQMAEPRWV 109

Query: 110 ISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           ++ GAC +SGGIF D Y V  G DKI+PVDVY+PGCPP P   + G      L E
Sbjct: 110 VAVGACASSGGIF-DTYSVLQGIDKIIPVDVYVPGCPPRPEQIIEGVMQVQALCE 163


>UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGC1_9EURY
          Length = 172

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 1/108 (0%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G + C IE+    +   DA+R G+     SPR +D++L +G +T+ M    L  ++  PD
Sbjct: 42  GTSCCAIEMMTFGATKVDADRLGVLFNGDSPRQSDLILVSGTITKKMARRLLNVYEQIPD 101

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
           PK  I+ GAC  SGG++HD Y    G D+I+PVD +IPGCPP P   L
Sbjct: 102 PKYVIAVGACNVSGGLYHDSYNTIEGIDRIMPVDAFIPGCPPRPEEFL 149


>UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=Firmicutes
           RepID=NUOB_DESRM
          Length = 196

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 2/112 (1%)

Query: 47  GCNGCEIE-IFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAP 104
           G   C IE + A     FD  RFG +V+  SPR AD++L  G VT+      +R ++   
Sbjct: 66  GLACCAIEGLMAANMARFDLARFGYEVMRASPRQADVMLVCGTVTKKAAPFVVRLYEQMA 125

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
           +PK  I+ G+C  SGG F D Y V  G DK++PVDVYIPGC P P A ++GF
Sbjct: 126 EPKYVIAMGSCAISGGPFVDSYSVVPGVDKLIPVDVYIPGCAPRPDAVIHGF 177


>UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Caminibacter
           mediatlanticus TB-2 RepID=A6DAC3_9PROT
          Length = 140

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 3/129 (2%)

Query: 40  VYRVDCGGCNGCEIEIFAT-LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR 98
           ++R++ G CNGC++EI A+ +S  FD ++ G + + +   ADI + TG VT A   P L+
Sbjct: 9   IFRINTGSCNGCDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVT-ARSLPFLK 67

Query: 99  -AWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFA 157
              ++   P + IS G C  + GIF D Y + G  D  V VDV + GCPP P A L G  
Sbjct: 68  EVIKNHKKPYVVISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGVK 127

Query: 158 MALGLLEQK 166
            A+ +L++K
Sbjct: 128 TAIDILKRK 136


>UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Tax=cellular
           organisms RepID=NDHK_THEEB
          Length = 237

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 1/108 (0%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106
           G   C IE  A +   FD +RFG+    SPR AD+++ +G +T  M    +R ++  P P
Sbjct: 49  GTACCFIEFAAMIGSRFDFDRFGLVPRNSPRQADLIITSGTITMKMAPALVRLYEQMPSP 108

Query: 107 KICISYGACGNSGGIF-HDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
           K  I+ GAC  +GG+F  D Y    G DK++PVDVY+PGCPP P A +
Sbjct: 109 KYVIAMGACTITGGMFSSDSYSAVRGVDKLIPVDVYLPGCPPRPEAIM 156


>UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=Sphingobacteriales
           RepID=C7PSH0_CHIPD
          Length = 187

 Score = 94.7 bits (234), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 4/118 (3%)

Query: 51  CEIEIFATLSPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPDPKI 108
           C IE  AT++  +D  RFG  ++  +PR  D+L+  G +++ M +P LR  +    +P+ 
Sbjct: 52  CGIEFMATMASTYDMSRFGSERMAFTPRQCDLLMVMGTISKKM-APVLRQVYLQMAEPRW 110

Query: 109 CISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
            ++ GAC +SGG+F D Y V  G D+++PVDVY+PGCPP P A + GF     L+ Q+
Sbjct: 111 VVAVGACASSGGVF-DTYSVLQGIDQVIPVDVYVPGCPPRPEAIIDGFMRVQDLVGQE 167


>UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=19 Tax=Bacteria
           RepID=B1ZSE7_OPITP
          Length = 285

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 71/126 (56%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A++   L K   RS  + +V  GG    E ++    +  +D  RFGI+ V SPRHAD L+
Sbjct: 140 AALDEKLRKMFGRSLRLRQVSAGGSGAEEADLNVLGTIGWDLGRFGIQFVASPRHADGLV 199

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG V++ M     + W++ P PKI I+ GA   SGG+F     V  G D IVPVD+YIP
Sbjct: 200 VTGPVSKGMELALRKTWEAMPAPKIVIAVGAEAISGGVFAGHPQVRNGVDAIVPVDLYIP 259

Query: 144 GCPPTP 149
           G PP P
Sbjct: 260 GWPPHP 265


>UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_SORC5
          Length = 194

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 18/151 (11%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTR 90
           KK     Y +   C     C +E  A  SP FD  RFG +V   SPR AD+L   G +++
Sbjct: 34  KKYSLFQYPFVTAC-----CGMEYMAMASPRFDMARFGAEVPRFSPRQADLLWVVGTISQ 88

Query: 91  AMRSPAL-RAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
             ++PAL R ++   DPK  +++G C + GG F+D Y    G DK++P DVY+PGCPP P
Sbjct: 89  -RQAPALKRIYEQMADPKWVLAFGTCASCGG-FYDNYTTVAGIDKVIPCDVYVPGCPPRP 146

Query: 150 AATLYGFAMALGLLEQKIHARGPGELDEQPA 180
            A L G    L LL+ KI ARG    D  PA
Sbjct: 147 EAVLDG----LMLLQDKI-ARG----DRTPA 168


>UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=cellular organisms
           RepID=NUOB_DEIGD
          Length = 178

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 6/133 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+ ++     D  RFG +V   SPR AD+++  G +++ M     R +   PD
Sbjct: 42  GLACCAIEMMSSTDGRNDLSRFGSEVFRASPRQADVMIVAGRLSKKMAPIMRRVYDQMPD 101

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  IS GAC +SGG+F++ Y V    D +VPVDV++PGCPP P A +Y    A+  L++
Sbjct: 102 PKWVISMGACASSGGMFNN-YAVVQNVDHVVPVDVFVPGCPPRPEALIY----AVMQLQK 156

Query: 166 KIHARGPGELDEQ 178
           K+         EQ
Sbjct: 157 KVRGEAYDARGEQ 169


>UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Metallosphaera sedula DSM 5348 RepID=A4YGN5_METS5
          Length = 203

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 66/128 (51%), Gaps = 8/128 (6%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            KRS Y+Y +D G C GC +E+    SP +D  RFGI    +P+HAD LL  G + + M 
Sbjct: 80  FKRSFYLYPLDAGSCGGCNLELRLISSPQYDMTRFGIFFTNTPKHADALLIMGNLGKRME 139

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               RA+   P PK+ I  G C  SGG+         G    +  DV +PGCPPTPA+ L
Sbjct: 140 EVIRRAYDVIPSPKLVILLGTCAISGGV--------TGIPPDIRGDVIVPGCPPTPASIL 191

Query: 154 YGFAMALG 161
                A G
Sbjct: 192 DALIKAKG 199


>UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japonica Group
           RepID=C7IWD0_ORYSJ
          Length = 379

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 1/101 (0%)

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           FD +R+G+    SPR AD++L  G VT  M    +R ++  P+PK  I+ GAC  +GG+F
Sbjct: 153 FDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMF 212

Query: 123 H-DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
             D Y    G DK++PVDVY+PGCPP P A +      LGL
Sbjct: 213 STDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLLGL 253


>UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=Thermoprotei
           RepID=A2BJ94_HYPBU
          Length = 209

 Score = 93.6 bits (231), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 10/151 (6%)

Query: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110
           C  E  A   P +D+ER G      PR+ ++LL  G +TR M   A   W+  P PK  I
Sbjct: 55  CGAEFAAVYDPKYDSERLGSLPFTHPRNTNVLLVEGTLTRKMARAARLVWEQMPWPKFVI 114

Query: 111 SYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           + GAC  +GGIF++ Y +    ++I+PVD Y+PGCPPTP A     A AL  L++K+   
Sbjct: 115 AMGACAITGGIFYNSYNI-VRVNQILPVDYYVPGCPPTPEAV----ANALIKLQEKVRK- 168

Query: 171 GPGELDEQPAEILHGDMVQPLRVKVDREARR 201
             GE   +P +I     ++ L      +ARR
Sbjct: 169 --GEW--KPRDIEDKKFLEELMAPHYEKARR 195


>UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd subunit n=1
           Tax=uncultured marine microorganism HF4000_APKG10H11
           RepID=B3TC56_9ZZZZ
          Length = 182

 Score = 93.6 bits (231), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 70/133 (52%), Gaps = 8/133 (6%)

Query: 22  SIASMKASLLKKI-----KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP 76
           ++A  K  L+KK+     K S +V  +  G C+    E  A     +D ERFG  V+ + 
Sbjct: 25  NVAIKKVPLVKKLITWGRKNSLWVVHLTTGCCSP---EFAALAGAGYDMERFGPLVMAAM 81

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           R  DIL+  G V   M     R +   PDPK  I+ G C  SGG + D Y +  G DKI+
Sbjct: 82  RQCDILIIEGQVADKMAEVVKRTYDQMPDPKYVIAVGNCAISGGFYWDSYSMVMGIDKII 141

Query: 137 PVDVYIPGCPPTP 149
           PVDVY+PGCPP P
Sbjct: 142 PVDVYVPGCPPRP 154


>UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospirillum
           RepID=A3ETD3_9BACT
          Length = 169

 Score = 93.2 bits (230), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 63/117 (53%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
           S  +  VD G CN CE+E+ A     +  ER GI+ V SPRHAD+LL TG V+  M  P 
Sbjct: 35  SLSIRHVDAGSCNACELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQMEQPL 94

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
           L   ++   PK  ++ G C   GG+F     V  G D + P    +PGCPP+P+  L
Sbjct: 95  LDTHEAMASPKTVLAVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDIL 151


>UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=cellular organisms
           RepID=NUOB_LEPBA
          Length = 186

 Score = 93.2 bits (230), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 74/123 (60%), Gaps = 8/123 (6%)

Query: 51  CEIEIFATLSPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRSPALRA-WQSAPDPKI 108
           C IE  +T    +D  RFG  +   SPR AD++L  G +T  M +P LR  +    +PK 
Sbjct: 45  CGIEYMSTACADYDIARFGAERPSFSPRQADMILVLGTITYKM-APVLRQIYDQLAEPKF 103

Query: 109 CISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
            IS GAC +SGG+FH  Y V  G D+I+PVDVY+PGCPP P A L     AL  L++K+ 
Sbjct: 104 VISVGACASSGGMFHT-YGVLQGVDRILPVDVYVPGCPPRPEAILD----ALVKLQKKVQ 158

Query: 169 ARG 171
           ++G
Sbjct: 159 SQG 161


>UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=Nitrosopumilus
           maritimus SCM1 RepID=A9A345_NITMS
          Length = 174

 Score = 93.2 bits (230), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 71/120 (59%), Gaps = 7/120 (5%)

Query: 51  CEIEIFATLSPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPDPKI 108
           C +E  A  SP +D ERFGI +   S R  D+++  G +TR M +P LR  +   P+PK 
Sbjct: 52  CSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKM-APRLRLVYDQMPEPKY 110

Query: 109 CISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
            I+ GAC  +GG++ D Y V  G D ++PVDVY+PGCPP P   + G      LL++KI 
Sbjct: 111 VIAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCI----LLQEKIK 166


>UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=Planctomycetaceae
           RepID=D2R5G9_9PLAN
          Length = 192

 Score = 93.2 bits (230), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 6/122 (4%)

Query: 51  CEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKIC 109
           C IE+ AT +   D  RFG +V   SPR  D+++  G V   M     R WQ   +PK C
Sbjct: 36  CGIELMATGASRHDLARFGAEVFRFSPRQCDLMIVAGRVVMKMLPVLQRIWQQMHEPKWC 95

Query: 110 ISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
           IS GAC ++GG+F D Y V  G D+ +PVD+Y+PGCPP P         A+  L+ KI  
Sbjct: 96  ISMGACASTGGVF-DTYAVVQGIDRFIPVDMYVPGCPPRPEQ----LTQAIIDLQDKIQR 150

Query: 170 RG 171
            G
Sbjct: 151 EG 152


>UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=cellular organisms
           RepID=C9RKY2_FIBSS
          Length = 419

 Score = 93.2 bits (230), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 73/124 (58%), Gaps = 8/124 (6%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRA-WQSAP 104
           G + C IE+ ++    +D  RFG +V   SPR AD+ +  G +TR M +PA++  W+  P
Sbjct: 42  GTSCCAIEMMSSSMARYDIARFGSEVFRSSPRQADLFILAGTITRRM-APAIQMLWEQIP 100

Query: 105 DPKICISYGACGNSGGIF-HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            PK  I+ GAC  SGG F +D Y V  G   ++PVDV++PGCPP P A  +G    L  L
Sbjct: 101 GPKYVIAMGACTISGGPFIYDNYSVVRGAQNLIPVDVFVPGCPPRPEALFHG----LLTL 156

Query: 164 EQKI 167
            +KI
Sbjct: 157 REKI 160


>UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=Bacteria
           RepID=NUOB2_ACIBL
          Length = 202

 Score = 92.8 bits (229), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+    +  +D  RFG +V  PSPR +D+++  G VT  M     R ++  P+
Sbjct: 35  GLACCAIEMITASTARYDIARFGSEVFRPSPRQSDLMIVAGTVTLKMAPVVQRIYEQMPE 94

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  ++ GAC + GG F+  Y    G DKIVPVDVY+ GCPP P    YG       ++ 
Sbjct: 95  PKWVMAMGACASVGGPFNT-YATLQGVDKIVPVDVYVVGCPPRPENLFYGLLKLQDKIDH 153

Query: 166 KIHARGPGE--LDE 177
              A+ P +  LDE
Sbjct: 154 MTLAKRPTDVRLDE 167


>UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LSU0_ACIC1
          Length = 269

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 92/178 (51%), Gaps = 21/178 (11%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKR---SAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           RD   +P     D+++A+++A L ++ +    S +V  VD G     E E+ A L+P++D
Sbjct: 92  RDLLVVPALPETDDALAAVRAELARRTRLLRRSIHVRHVDAGSDGADEWEVLALLNPVYD 151

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD 124
             R GI    SPRHAD+LL TG  +R M +P  R  Q+AP P + I+ G    SGG+ H 
Sbjct: 152 IHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIAAGTDAISGGLVHP 211

Query: 125 LYCVWGGTDKIVP------------------VDVYIPGCPPTPAATLYGFAMALGLLE 164
            Y   GG   ++                   VD+++PG PPTP A L+   +A+G L+
Sbjct: 212 TYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPTPFALLHALLLAMGRLQ 269


>UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=Dehalococcoides
           RepID=NUOB_DEHSC
          Length = 200

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+    +  +D  RFG+ +   SPR AD+++  G +T  M     R +   P+
Sbjct: 75  GLACCAIEMMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPE 134

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
           PK  ++ GACG SGG+F D Y V  G + +VPVDVY+PGCPP P A +
Sbjct: 135 PKWVLAMGACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALM 182


>UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydrogenasei, chain b)
           (Ndh-1, chain b) n=1 Tax=Persephonella marina EX-H1
           RepID=C0QR84_PERMH
          Length = 181

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 3/111 (2%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPD 105
           G   C IE+  T +  FD +R GI    SPR +D+L+  G V   + +P L+  +   PD
Sbjct: 32  GLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSDVLIVAGTVVNKV-APMLKLIYDQMPD 90

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
           PK  I+ G C ++GG F   Y    G D+I+PVDVY+PGCPPTP A L+G 
Sbjct: 91  PKWVIAMGGCSSAGGPFPT-YATLQGVDRIIPVDVYVPGCPPTPQALLWGI 140


>UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=Bacteria
           RepID=NUOB_BLOPB
          Length = 236

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 6/123 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G + C +E+    + + D  RFG +V+  SPR AD ++  G     M     R +    +
Sbjct: 65  GLSCCYVEMTTAFTAIHDVARFGSEVLRASPRQADFMVIAGTPFLKMVPVIQRLYDQMLE 124

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  IS GAC NSGG++ D+Y V  G DK +PVD+YIPGCPP P A + G    L LL++
Sbjct: 125 PKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDLYIPGCPPRPEAYIQG----LLLLKK 179

Query: 166 KIH 168
            I+
Sbjct: 180 SIN 182


>UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Tax=Thaumarchaeota
           RepID=A0RY66_CENSY
          Length = 160

 Score = 91.3 bits (225), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 7/120 (5%)

Query: 51  CEIEIFATLSPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPDPKI 108
           C +E  A   P +D ERFGI +   S R  D+++  G +TR M +P LR  +   P+PK 
Sbjct: 38  CSVEFGAASGPKYDVERFGIIEAFGSLRQCDLIVVQGTITRKM-APRLRLVYDQMPEPKY 96

Query: 109 CISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
            I+ GAC  +GG++ D Y V  G D ++PVDVY+PGCPP P   + G      LL++KI 
Sbjct: 97  VIAMGACAITGGLYFDSYNVLPGIDGVLPVDVYVPGCPPRPETLIQGCM----LLQEKIK 152


>UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW77_ACICJ
          Length = 164

 Score = 90.9 bits (224), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 64/133 (48%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A + AS    + RS  V  VD G C GCEIEI A           GI +V   R ADILL
Sbjct: 12  ARLAASGQALLGRSLAVRHVDAGSCGGCEIEIAACRRLRGGMAAHGIAMVEDLRAADILL 71

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG  TR +     ++      P+  ++ G C   GG+F  +  V GG   ++PVD+ I 
Sbjct: 72  VTGVATRNLAEAVRKSLAGMAPPRFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIA 131

Query: 144 GCPPTPAATLYGF 156
           GCPP P   L G 
Sbjct: 132 GCPPAPRQILAGL 144


>UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria RepID=A3THJ2_9MICO
          Length = 198

 Score = 90.5 bits (223), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+ A  +P +D  RFG+ +   +PR AD+++  G V+  M     + +   P+
Sbjct: 34  GLACCAIEMMAVGTPDYDIARFGMERFSATPRQADLMIVAGRVSNKMAPVVRQVYDQMPN 93

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
           PK  IS G C +SGG+F++ Y +  G D I+PVD+Y+PGCPP P   L
Sbjct: 94  PKWVISMGVCASSGGMFNN-YAIVQGVDHIIPVDIYLPGCPPRPEMLL 140


>UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermoplasmatales
           RepID=Q978D5_THEVO
          Length = 222

 Score = 90.5 bits (223), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 7/143 (4%)

Query: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
           T D+ I ++K +     +RS +V+ +D G C  C +E  +  SP +DA R GI +V +PR
Sbjct: 70  TGDQRIFTIKKTE-DTFRRSFHVFPIDSGACGACNMEFLSIFSPQYDANRLGIFMVNTPR 128

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
           +AD L+  G +T  M+    RA+++ P+PK+ I+ GAC  +GGI  +        D+   
Sbjct: 129 YADALIVMGVMTPGMKEALDRAYEAMPEPKLVIAMGACAVTGGIMGE-----NPLDR-EK 182

Query: 138 VDVYIPGCPPTPAATLYGFAMAL 160
            +V I GCPP+P   +     A+
Sbjct: 183 YNVEIAGCPPSPYTLIAALNAAM 205


>UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=Pirellula staleyi
           DSM 6068 RepID=D2R6Y4_9PLAN
          Length = 227

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 5/141 (3%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCG-GCNGCEIEIFATLSPLFDAERFGIKVV-PSP 76
           V+E++ +          R + ++ +  G  C  C IE+ A  +  +D +RFG      +P
Sbjct: 30  VEENVFTTSVEQAINWARQSSIWPMTFGLAC--CAIEMMAAGASRYDMDRFGAGAFRATP 87

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG-IFHDLYCVWGGTDKI 135
           R AD+++  G VT  M S   R +   PDPK  I+ GAC   GG  F   Y V  G D +
Sbjct: 88  RQADLMIVAGTVTYKMASRVRRLYNMMPDPKFVIAMGACTVGGGPYFKWGYHVVKGVDLV 147

Query: 136 VPVDVYIPGCPPTPAATLYGF 156
           VPVDVYIPGCPP P A L G 
Sbjct: 148 VPVDVYIPGCPPRPEALLEGL 168


>UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometricum borinquense
           DSM 11551 RepID=C1VB41_9EURY
          Length = 236

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 15/161 (9%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+  T S   D +RF   V   SPR AD+++  G +         R +   P+
Sbjct: 70  GIACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPE 129

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  +  G+C  SGG F + Y V  G ++++PVD+++PGCPP P A +YG A     L+Q
Sbjct: 130 PKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAK----LQQ 185

Query: 166 KIHARG--------PGELDEQPAEILHGDMVQPLRVKVDRE 198
           +I A G        P EL EQ  ++   +++  L  ++D E
Sbjct: 186 RI-AEGESSPVTVKPYEL-EQFGDLEQDELIDHLADQIDEE 224


>UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_SALRD
          Length = 213

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 6/118 (5%)

Query: 51  CEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKIC 109
           C IE+     P +D+ RFG + +  SPR AD+++  G  +  M     R W    DPK C
Sbjct: 39  CAIEMMGFAGPKYDSARFGSEAMRFSPRQADLMIVAGWCSYKMSHAIRRVWDQMGDPKWC 98

Query: 110 ISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
           I+ GAC ++GG+ H  Y V  G D  +PVDVYI GCPP P + L+    AL  +++KI
Sbjct: 99  IAMGACASTGGM-HRCYGVVQGVDNFLPVDVYISGCPPRPESVLH----ALMDIQEKI 151


>UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cystobacterineae
           RepID=NUOB_MYXXD
          Length = 187

 Score = 90.1 bits (222), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHA 79
           +SI S      +K     Y Y   C     C +E  +  +   D  RFG +    SPR A
Sbjct: 22  QSIVSKGLGWARKYSLFTYPYATAC-----CGMEYMSVAASRHDISRFGAEFPRFSPRQA 76

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+L+  G +         R ++   +PK  +++G C +SGG F+D Y V  G D+I+PVD
Sbjct: 77  DLLMVVGTINLKQAPILKRVYEQMAEPKWVVAFGVCASSGG-FYDNYAVLQGIDRIIPVD 135

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           VYIPGCPP P   L G  +    +  ++H
Sbjct: 136 VYIPGCPPRPEQVLDGLMLLQDKIGNQVH 164


>UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 Tax=Halobacteriaceae
           RepID=B0R3U2_HALS3
          Length = 235

 Score = 89.7 bits (221), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 15/162 (9%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+  T S   D +RF   V   SPR AD+++  G +         R +   P+
Sbjct: 69  GIACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPE 128

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  ++ G C  SGG F + Y V  G ++++PVD++IPGCPP P A +YG A     L++
Sbjct: 129 PKFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIHIPGCPPRPEALVYGVAK----LQE 184

Query: 166 KIHARG--------PGELDEQPAEILHGDMVQPLRVKVDREA 199
           +I A G        P EL+E   ++   ++V  L   +D E+
Sbjct: 185 RI-ANGESSPVTVKPYELEEF-GDLERDEIVDKLAADIDEES 224


>UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Proteobacteria
           RepID=NUOB_SHEWM
          Length = 213

 Score = 89.7 bits (221), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 6/129 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G + C +E+  + +   D  RFG +V+  +PR AD+++ +G V   M       +    +
Sbjct: 49  GLSCCYVEMATSFTSRHDIARFGSEVIRATPREADLIVISGTVFLKMAPVIKHLYDQMLE 108

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  I  G+C NSGG++ D+Y V  G D+ +P+D+Y+PGCPP P A +YG    L LL++
Sbjct: 109 PKWVICMGSCANSGGMY-DVYSVVQGADRFLPIDLYVPGCPPRPEALMYG----LTLLQE 163

Query: 166 KIHARGPGE 174
            I    P +
Sbjct: 164 AIKDGAPRQ 172


>UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=Sulfolobus
           RepID=D2PJN5_SULIS
          Length = 201

 Score = 89.7 bits (221), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 12/122 (9%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            KRS Y+Y +D G C GC +E+    SP +D  RF I    +PRHAD L+  G +T  M+
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD--VYIPGCPPTPAA 151
               +A+++ P+PK+ I  GAC  SGGI  +           VP++  V I GCPP P  
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEISGCPPNPFT 190

Query: 152 TL 153
            L
Sbjct: 191 IL 192


>UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyces limnophilus DSM
           3776 RepID=C1ZCK3_PLALI
          Length = 225

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 68/129 (52%), Gaps = 6/129 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C +E+ AT    +D +RFG      +PR AD+++  G VT  M S   R +   PD
Sbjct: 59  GIACCAMEMMATGMSKYDLDRFGSGAFRATPRQADLMIVAGTVTYKMASRIRRLYDQMPD 118

Query: 106 PKICISYGACGNSGG-IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           PK  I+ GAC   GG  F   Y V  G D +VPVDVYIPGCPP P A L G       ++
Sbjct: 119 PKYVIAMGACTIGGGPYFKYGYHVVKGVDLVVPVDVYIPGCPPRPEALLEGVMR----IQ 174

Query: 165 QKIHARGPG 173
            KI AR  G
Sbjct: 175 DKIRARKLG 183


>UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2
           Tax=Aciduliprofundum boonei T469 RepID=B5ICA0_9EURY
          Length = 179

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 61/128 (47%), Gaps = 12/128 (9%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             +S +++ +D G C+ C  EI    SP +D  R G    P PRHADILL  G  T  M 
Sbjct: 60  FNKSVHIFVLDVGSCSSCNREISLLNSPQYDLHRLGFFFTPVPRHADILLVIGEPTEKMI 119

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
                A++  P+PKI ++ GAC N               +KI+ VD  + GCPP P A L
Sbjct: 120 PVLKEAYEQMPEPKIVMTAGACANE------------KIEKIIKVDARVSGCPPQPIAIL 167

Query: 154 YGFAMALG 161
               M  G
Sbjct: 168 KALLMLTG 175


>UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_FRAAA
          Length = 281

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 4/105 (3%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRA-WQSAP 104
           G   C IE+ +T +  +D  RFG++V   SPR AD+++  G V++ M +P LR  +   P
Sbjct: 34  GLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADLMIVAGRVSQKM-APVLRQIYDQMP 92

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
           +PK  +S G C +SGG+F++ Y +  G D IVPVD+Y+PGCPP P
Sbjct: 93  EPKWVLSMGVCASSGGMFNN-YAIVQGVDHIVPVDMYLPGCPPRP 136


>UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=7 Tax=Trypanosomatidae RepID=NDUS7_TRYBB
          Length = 202

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 6/122 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPD 105
           G   C +E+    +  +D +RFGI   P+PR A+I++ +G VT  M +P LR  +    +
Sbjct: 74  GLACCAVEMMHAYASRYDLDRFGIVPRPTPRQAEIIIVSGTVTNKM-APILRNIYVQMVN 132

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  IS G+C N GG +H  Y V  G ++ +PVD +IPGCPP+  + ++     L  L++
Sbjct: 133 PKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPPSAESLVF----CLHTLQK 188

Query: 166 KI 167
           KI
Sbjct: 189 KI 190


>UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteroidales
           RepID=NUOB_AZOPC
          Length = 191

 Score = 86.7 bits (213), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 1/106 (0%)

Query: 51  CEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKIC 109
           C IE     +  +D  RFG +V   SPR AD++   G +   M     R +    +PK  
Sbjct: 53  CGIEFMCLGAARYDFARFGWEVTRNSPRQADVVFCCGTIVHKMAPVLKRLYDQMSEPKYV 112

Query: 110 ISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
           I+ G+C  SGG F   Y    G DKI+PVDVYIPGCPP P A +YG
Sbjct: 113 IALGSCAISGGPFKSSYHTIMGIDKIIPVDVYIPGCPPRPDAMIYG 158


>UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=Thermoprotei
           RepID=A1RZ48_THEPD
          Length = 171

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 5/118 (4%)

Query: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110
           C  E  AT +P FDAERFG     SPR  ++++  G +T+ M   A   +   P PK  I
Sbjct: 52  CGAEFAATSAPRFDAERFGFLPFNSPRQTNLMVIEGTLTKKMGEAAKIVYDQMPWPKFVI 111

Query: 111 SYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           + GAC   GG+F++ Y +    D I+PV+ +IPGCPP P A     A A+ +L++K+ 
Sbjct: 112 AMGACAIDGGLFYNSYNIVRPKD-ILPVEYFIPGCPPRPEAV----AQAIIMLQEKVR 164


>UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (MbxJ) n=11
           Tax=cellular organisms RepID=C5A4Q2_THEGJ
          Length = 194

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 45  CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAP 104
           C GC G E+   AT    +D ERFGI   P+PR AD+ L TG VT       +  ++   
Sbjct: 36  CTGCGGIEMPPLATAR--YDFERFGIMPNPAPRMADLFLITGYVTPKTLKRIIITYEMMQ 93

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           DPK  +++G+C  +GG++ D Y V    DK +P+DV I GC P P A + G    +  +E
Sbjct: 94  DPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPRPEAVMDGIMEIMRKIE 153

Query: 165 Q 165
            
Sbjct: 154 N 154


>UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=Fibrobacter
           succinogenes subsp. succinogenes S85 RepID=C9RJJ6_FIBSS
          Length = 211

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 13/175 (7%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE  +T    +D  R G + V  +PR +D+LL  G +T        R ++   +
Sbjct: 33  GTACCAIEFMSTEVGRYDLSRIGSEYVRFTPRQSDVLLVAGTITYKQAPILKRIYEQMAE 92

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           P+  I+ GAC +SGG F+D YC   G D I+PVDVYI GCPP P A    F  A+  L++
Sbjct: 93  PRWVIAMGACASSGG-FYDCYCTVPGIDHIIPVDVYIGGCPPRPEA----FFDAMFDLQK 147

Query: 166 KIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIAD--DYLTQ 218
           K+         +Q AE +  + ++ ++VK   EA+R A      ++ D  D++ +
Sbjct: 148 KVKDES---FMKQRAESVK-EQLEMIKVKT-AEAKREAAACAREKVVDIKDFMKE 197


>UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax=Bacteria
           RepID=NUOB2_OPITP
          Length = 191

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 65/127 (51%), Gaps = 7/127 (5%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+ A     FD  RFG +V  PSPR AD+++  G V + M       +    +
Sbjct: 59  GLACCAIEMMAAGMARFDISRFGAEVFRPSPRQADVMIVAGTVNKKMAPAVKLLYDQMLE 118

Query: 106 PKICISYGACGNSGGIFH--DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
           PK  I+ G C  SGG F     Y V  G D++ PVDVY+PGCPP P A + G       L
Sbjct: 119 PKWVIAMGQCAISGGPFKYPGQYAVVEGVDQLFPVDVYVPGCPPRPEALIEGILK----L 174

Query: 164 EQKIHAR 170
           E+KI  +
Sbjct: 175 EEKITGK 181


>UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=cellular
           organisms RepID=A9BJL8_PETMO
          Length = 195

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 1/110 (0%)

Query: 48  CNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106
           C GC  +E+  T++  FD ER G+  + +PR AD+LL TG ++       +  ++    P
Sbjct: 42  CTGCGAVELPPTMTARFDMERLGMGPMATPRQADVLLITGYLSVKTLRRVIYTYEQMMTP 101

Query: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
           K  + +G+C  +GGI++D Y V    D  +PVD+Y+ GC P P A +  F
Sbjct: 102 KYLVGFGSCTINGGIYYDSYAVINRLDYYLPVDLYVAGCMPRPEAIMNTF 151


>UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax=Leptospira biflexa
           serovar Patoc RepID=B0SCU6_LEPBA
          Length = 273

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 8/128 (6%)

Query: 35  KRSAYVYR-VDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           K+  ++YR V  GG N  E E+ A+ + +FD+ER GI+ V SP+HAD ++F+G ++  M 
Sbjct: 135 KKRGFLYREVAAGGNNTVESELNASFNSVFDSEREGIRCVASPKHADTIVFSGPISEQME 194

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
            P   AW    +P+  I+ G    SGG+F        G     P D+YI G PP P   L
Sbjct: 195 GPLQTAWDVLSEPRALIACGTEAVSGGLFPK------GKIPKEP-DLYISGDPPRPDVIL 247

Query: 154 YGFAMALG 161
            GF + +G
Sbjct: 248 QGFRLLIG 255


>UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophilus torridus
           RepID=Q6L0U2_PICTO
          Length = 202

 Score = 83.6 bits (205), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 8/137 (5%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA 79
           ++ I+ +  S+ KK ++S  +Y +D G C  C  E+F+   P +D  R+ I    +PRHA
Sbjct: 69  NDDISIISGSIDKKFRKSLNIYSIDSGTCGACNSELFSISIPEYDLTRYHIFFTNTPRHA 128

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D ++ +G    +M+     A  + P P   I  GAC  SGGI         G+   +   
Sbjct: 129 DAIILSGIYNESMKDVIDNALGAMPKPGYLILLGACALSGGII--------GSGHEIKAV 180

Query: 140 VYIPGCPPTPAATLYGF 156
           + IPGCPP P   L G 
Sbjct: 181 LEIPGCPPNPYTILKGL 197


>UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=Staphylothermus
           marinus F1 RepID=A3DM92_STAMF
          Length = 179

 Score = 83.2 bits (204), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 8/148 (5%)

Query: 36  RSAYVYRVD-CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           RS  ++ +  C  C    IE+   +    DAER+GI   PSPR AD+L+  G VT+    
Sbjct: 16  RSRSIWMIHYCSACGA--IELPPNMMAPLDAERWGIMPAPSPRQADVLVIMGYVTKKTLK 73

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
             +R +   P+P+  +    C  +GG++ D Y      D+ +PVDV++PGC P     L 
Sbjct: 74  VLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPGCMPRAEDWLQ 133

Query: 155 GF-----AMALGLLEQKIHARGPGELDE 177
           GF      ++ G +        PGEL+E
Sbjct: 134 GFLKLRKKISEGRIVNPRPVEEPGELEE 161


>UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea
           RepID=Q64DY8_9ARCH
          Length = 788

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110
           C +E+  T +  +D ER G   +   R A+ ++  G +TR M       W+  PDPK   
Sbjct: 40  CGVELAHTGACGYDMERLGTLNMGISRQANFIMVEGTITRKMARALRIVWEQMPDPKFVN 99

Query: 111 SYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
             G CG  GGIF + Y +   +D IVPVD +IPGCP TP + L G    +  +++KI  R
Sbjct: 100 VIGTCGQRGGIFWNSYNITRPSD-IVPVDFFIPGCPITPESLLRG----VRAVQEKIEGR 154

Query: 171 GPGELDEQPAEILHGD 186
               +  +  E+  GD
Sbjct: 155 DNTTIRFKHVELPSGD 170


>UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=Bacteria
           RepID=NUOB1_OPITP
          Length = 171

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 67/129 (51%), Gaps = 6/129 (4%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+    +  FD  RFG +V+  SPR +D ++  G+VT  M     R +     
Sbjct: 41  GLACCAIELMQVGNGRFDIARFGAEVMRFSPRQSDCMIVAGSVTYKMAPQIRRIYDQMMS 100

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  I+ GAC +SGG++   Y    G D+I+PVDVYI GCPP P     G   AL  L+ 
Sbjct: 101 PKWVIAMGACASSGGMYRS-YAHMQGVDRILPVDVYISGCPPRPE----GILDALMKLQA 155

Query: 166 KIHARGPGE 174
           KI     G+
Sbjct: 156 KIRTERAGQ 164


>UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans
           RepID=Q5FU78_GLUOX
          Length = 161

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 59/115 (51%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           +R   +Y ++ GGC GC +EI +     F  E+ G   V  P  AD LL TGAVTR    
Sbjct: 34  ERPIGLYVLEAGGCEGCFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVCAE 93

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
              R W++ P  +  I+ GAC   GG F   Y   GG + + PV   I GCPP+P
Sbjct: 94  MVDRVWRAMPPGRSLIAVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSP 148


>UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=Thermoproteaceae
           RepID=A8MBS9_CALMQ
          Length = 374

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 1/116 (0%)

Query: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110
           C +E     +P +DAER+G   +  PR  + ++  G VTR M      A++  P PK  I
Sbjct: 46  CGVEFAHASAPGYDAERWGFLPIFGPRQTNSIVIEGTVTRKMARIVKTAYEQMPYPKFVI 105

Query: 111 SYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
           + G+C   GG+F + Y V    ++IVPVD ++ GCPPTP A +    M    +E K
Sbjct: 106 AMGSCAMEGGVFWNSYHV-VRVNEIVPVDAWVMGCPPTPEAVIRAIRMVQSKIEGK 160


>UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea RepID=B1L7S0_KORCO
          Length = 174

 Score = 81.3 bits (199), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 5/118 (4%)

Query: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110
           C  E  A+ +P +DAER G       R  ++L   G +++ M   A+  ++  P+PK  I
Sbjct: 53  CGAEFAASAAPKYDAERLGFLPFIGIRQCNVLFIEGTLSKKMAEAAIWVYEQMPEPKFVI 112

Query: 111 SYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
             GAC   GGIF + Y +    D I+PV+V+IPGCPP P A     A A+ +L++KI 
Sbjct: 113 GMGACAIDGGIFWNSYNIVRPMD-ILPVNVFIPGCPPRPEAV----AQAIIMLQRKIR 165


>UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI98_9EURY
          Length = 206

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+    +   DAER G  +   +PR  D+++  G VT++M     R ++    
Sbjct: 65  GLACCAIELMDFGAARIDAERKGYLLFRGTPRQCDVMIVAGWVTKSMVPRVKRLYEQMAS 124

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PK  ++YG C  +GG +++ Y +  G D+++PVDVY  GCPP P         AL  L++
Sbjct: 125 PKYVVAYGECATAGGPWYESYNIVKGIDQVLPVDVYAIGCPPKPE----NLFAALMKLQE 180

Query: 166 KIHARGPGELDEQPAE 181
           K+  +  G  +   AE
Sbjct: 181 KVGGKVAGSEERTIAE 196


>UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax=Leptospira
           RepID=Q04P25_LEPBJ
          Length = 273

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 8/139 (5%)

Query: 32  KKIKRSAYVYR-VDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           K  K++ + +R V   G N  E EI A+ + LFD+E   I+VV SP+HAD L+++G V  
Sbjct: 129 KTTKKTGFQFREVAASGNNTTEAEINASFNALFDSEASKIRVVASPKHADALVYSGPVGP 188

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
            M  P   AW++ P PK  ++ G+   SGG+F       G   K    D++I G PP P 
Sbjct: 189 NMEEPLNTAWETMPSPKALVACGSEAVSGGLFK-----LGKLPK--EPDLFIGGDPPRPD 241

Query: 151 ATLYGFAMALGLLEQKIHA 169
             +  F   +G  E    A
Sbjct: 242 VIISAFRYLMGTRELSFTA 260


>UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=1 Tax=Conexibacter woesei
           DSM 14684 RepID=UPI0001C31273
          Length = 229

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 7/133 (5%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHADILLFTGAVTRAMRSPALRAWQSAPD 105
           G   C IE+ +      D  RFG +    SPR AD+L+ +G V+  M     R +    +
Sbjct: 71  GLACCAIEMMSLPGARLDIGRFGFEAFRASPRQADMLILSGRVSIKMAPIVRRIYDQMLE 130

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           P+  IS GAC +S G+F++   V    DK +P+DV++PGCPP P A     A A+  L  
Sbjct: 131 PRWAISMGACCSSMGVFNNYALV--PADKFMPIDVHVPGCPPRPEA----LAHAILKLRS 184

Query: 166 KIHARGPGELDEQ 178
           K+H   P    E+
Sbjct: 185 KVHGNPPAGWRER 197


>UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 Tax=Bacteria
           RepID=C5Q420_STAAU
          Length = 37

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 219 LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
           LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR
Sbjct: 1   LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 37


>UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulibacter bethesdensis
           CGDNIH1 RepID=Q0BPG7_GRABC
          Length = 174

 Score = 76.6 bits (187), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 1/148 (0%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
           D   +P   TV   IA  ++S   K+ ++  +  V+ GG + C +E+ A  +      R 
Sbjct: 17  DTASLPHAETVAALIARRRSSARPKLGQALSILHVESGGGSACLLELEALRAAPGLLARH 76

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           G++ V SP HADILL TG     + S   +AW++ P P+  I+ G      G+    Y  
Sbjct: 77  GLRFVTSPLHADILLITGDGCHNLTSAIHQAWEAMPGPRWAIAVGDGAAGDGLLRGSYAS 136

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGF 156
            G  ++I P D+ IPG PP     L G 
Sbjct: 137 TGNMEEI-PFDLVIPGSPPAADTILSGL 163


>UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 Tax=Magnetococcus
           sp. MC-1 RepID=A0L9R6_MAGSM
          Length = 213

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 46  GGCNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAP 104
           G   GC  IE+   ++P FDA R+G++   +PR +++ + +G ++       +RA++   
Sbjct: 59  GFGTGCGAIEMRPLMTPRFDAYRYGVQWRATPRQSNLFIVSGYLSVKTLKRVVRAYEQMQ 118

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
            PK  +  G+C  +GG++ D Y      D  +PVD+Y+ GC P P A L G         
Sbjct: 119 SPKYVMGLGSCTINGGMYWDSYNTIKQLDDYLPVDLYVTGCMPRPEALLSGIEAL----- 173

Query: 165 QKIHARGPGE 174
           +KI   G GE
Sbjct: 174 KKIIREGRGE 183


>UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=Thermoproteaceae
           RepID=A4WJL4_PYRAR
          Length = 196

 Score = 73.9 bits (180), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 17/170 (10%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGG-----------CNGCEIEIFATLSPLFDAER 67
           +D+   SM  +L + + + A + ++   G            + C +E+  T  P FDAER
Sbjct: 1   MDKPTTSMSQALREFLLKKAKLEKIFNWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAER 60

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
           +G+    + R ++++L  G +TR M       ++  P+PK  ++ GAC   GG+F + Y 
Sbjct: 61  WGVLPFHTMRQSNVILVEGTITRKMAKVLKMVYEQMPEPKFVLAMGACAVRGGLFWNSYH 120

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
           V    D +VPVDVYI GCPPTP A +  F M    L  KI  + PG   E
Sbjct: 121 V-VQVDTVVPVDVYIAGCPPTPEAVVRAFIM----LHNKIKGK-PGPFIE 164


>UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q6C2Q1_YARLI
          Length = 216

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR-AWQSAPD 105
           G   C +E+    +P +D +R GI    SPR +DI++  G +T  M +P LR  +   P+
Sbjct: 82  GLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKM-APVLRQVYDQMPE 140

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           P+  IS G+C N GG +H  Y V  G D+IVPV
Sbjct: 141 PRWVISMGSCANGGGYYHFSYSVVRGCDRIVPV 173


>UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=Selaginella
           uncinata RepID=Q2WGH7_SELUN
          Length = 215

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 1/106 (0%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106
           G + C  E    +    D++R G     SPR AD+++  G  T  M    +R+++  P+P
Sbjct: 65  GTSCCFTEFAPLIGSRSDSDRHGSVPRSSPRQADLIITAGTATTKMAPSLVRSYEQTPEP 124

Query: 107 KICISYGACGNSGGIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           K  I+ GAC  +GG+   D +    G DK +P D Y PG PP P A
Sbjct: 125 KHAIAMGACTVTGGMLSTDPHSTVRGVDKSIPADTYPPGRPPKPEA 170


>UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Desulfurococcus
           kamchatkensis 1221n RepID=B8D5A0_DESK1
          Length = 337

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 30  LLKKIKRSAYVYRV----DCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           +L++I R AY   +     C  C   E      ++PL D ER+G    PSPR +D+ +  
Sbjct: 1   MLERIARWAYARSLWMIHYCSACGAVEFPPLV-MAPL-DWERYGYMPTPSPRQSDLYIGM 58

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G +T+      L  ++  P+PK+ ++   C ++GG + D Y  +   D  + V+ ++PGC
Sbjct: 59  GYLTKKTVKLVLNMYRQMPEPKLVLAGCNCTSTGGPYWDSYATYKRLDDFIEVEGWVPGC 118

Query: 146 PPTPAATL 153
            P P   L
Sbjct: 119 MPMPDDYL 126


>UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (NADH-ubiquinone oxidoreductase 20 kDa subunit) (Complex
           I-20kD) (CI-20kD) (PSST subunit). n=1 Tax=Gallus gallus
           RepID=UPI0000EC9F96
          Length = 176

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 6/64 (9%)

Query: 106 PKICIS--YGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
           P++C +  + +C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       L
Sbjct: 105 PELCFTNIFCSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQ----L 160

Query: 164 EQKI 167
           ++KI
Sbjct: 161 QKKI 164


>UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus
           profundus DSM 5631 RepID=D2RET0_ARCPR
          Length = 709

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 11/123 (8%)

Query: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110
           C +E+    +  +DAER G       R  ++++  GA+TR M       W+  P+PK  I
Sbjct: 21  CGVELAHAYACGYDAERIGSLNYGICRQTNLIIVEGAITRKMARVLRITWEQMPNPKFVI 80

Query: 111 SYGACGNSGGIFHDLYCV---WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
             GACG  GG+F + Y +   W      V V    PGCPPTP A + G       L++KI
Sbjct: 81  VMGACGIKGGLFKNSYHMVRPWDVVPVDVFV----PGCPPTPEALIRGIVA----LQKKI 132

Query: 168 HAR 170
             +
Sbjct: 133 EGK 135


>UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, putative n=1
           Tax=Ricinus communis RepID=B9SD17_RICCO
          Length = 188

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
           +R ++  P+PK  I+ GAC  +GG+F  D Y    G DK++PVD Y+ GCPP P A +  
Sbjct: 6   VRLYEQIPEPKYVIAMGACTITGGMFSTDSYSTIRGVDKLIPVDAYLSGCPPKPEAVIDA 65

Query: 156 FAMALGLLEQKIH 168
                  L ++I+
Sbjct: 66  ITKLRKKLSREIY 78


>UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
           RepID=UPI0000E81815
          Length = 187

 Score = 60.5 bits (145), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 115 CGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
           C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       L++KI
Sbjct: 127 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQ----LQKKI 175


>UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=Ignicoccus
           hospitalis KIN4/I RepID=A8A9X3_IGNH4
          Length = 207

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 10/136 (7%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106
           G   C IE+        D ER G+    +PR  D++L  G V R +     R +   P P
Sbjct: 38  GIMCCAIEMMQAAFAFHDFERLGVLARATPRQVDVILINGPVNRKLAERLRRLFMQTPGP 97

Query: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPV-------DVYI---PGCPPTPAATLYGF 156
           +  I  G C  +GG +     V  G  +++         DV++    GCPP P   L   
Sbjct: 98  RFVIVMGECAINGGPWWQSDYVLDGIHEVIESLPEEYRKDVHVVNLAGCPPRPEGLLRAI 157

Query: 157 AMALGLLEQKIHARGP 172
                L+ +   AR P
Sbjct: 158 LKMEELINEGDLARAP 173


>UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 Tax=Ixodes
           scapularis RepID=B7QG38_IXOSC
          Length = 162

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 28/40 (70%)

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
           +P+  IS G+C N GG +H  Y V  G D+I+PVD+Y+PG
Sbjct: 86  EPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 125


>UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2H7B9_CHAGB
          Length = 189

 Score = 50.1 bits (118), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 44/110 (40%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 106
           G   C IE+     P +D +R GI    SPR +D+++                       
Sbjct: 104 GLACCAIEMMHLSMPRYDNDRQGIIFRASPRQSDVMI----------------------- 140

Query: 107 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
                                V GG D+IVPVD+Y+PGCPPT  A  YG 
Sbjct: 141 ---------------------VAGGVDRIVPVDIYVPGCPPTAEALQYGI 169


>UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n=1 Tax=Thermococcus
           gammatolerans EJ3 RepID=C5A2R7_THEGJ
          Length = 229

 Score = 46.6 bits (109), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 29/150 (19%)

Query: 30  LLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFT 85
           L++K+K    V  VD  GC GC + I      L +     I  +          D+ L T
Sbjct: 3   LMEKLK----VLHVDFAGCEGCNVSIIRAYPKLMNEIDLDISYLRDGSCQYGEYDVALIT 58

Query: 86  GAVTRAMRSPAL--RAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG------------ 131
           G     M  P +     +     ++ +++G+C + GGI   L    GG            
Sbjct: 59  GGA--CMNEPRILEELKEIREKARVVVAFGSCASLGGI---LRFARGGQEPRPDHRNFQP 113

Query: 132 TDKIVPVDVYIPGCPPTPAA--TLYGFAMA 159
            + ++PVD  IPGCPPTP    + + F MA
Sbjct: 114 INSVIPVDYSIPGCPPTPQMLQSFFKFFMA 143


>UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN
          Length = 214

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 7/146 (4%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
           P P +  E + +    L+   +RS+         C  C +E+    +P +D +RFG+   
Sbjct: 54  PKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC--CAVEMMHMAAPRYDMDRFGVVFR 111

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICIS--YGACGNSGGIFHDLYCVWGG 131
            SPR +D+++  G +T  M +PALR     PD    +   +G     G +   L+ + G 
Sbjct: 112 ASPRQSDVMIVAGTLTNKM-APALRKSPPRPDAGAALRGLHGELRQRGRLL-PLFLLGGE 169

Query: 132 TDKIVPVDVYI-PGCPPTPAATLYGF 156
             +      ++ P  P T  A LYG 
Sbjct: 170 GLRPHRARGHLHPRLPTTAEALLYGI 195


>UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           n=1 Tax=Taeniopygia guttata RepID=UPI000194DF39
          Length = 183

 Score = 45.1 bits (105), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALR 98
           G   C +E+    +P +D +RFG+    SPR AD+++  G +T  M +PALR
Sbjct: 94  GLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKM-APALR 144


>UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=Thermococcus
           onnurineus NA1 RepID=B6YTV9_THEON
          Length = 225

 Score = 43.5 bits (101), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 21/146 (14%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFTGAVTRAMRSP 95
           V  VD GGC GC + I      L D     I  +          D+ + TG     M  P
Sbjct: 6   VLHVDVGGCEGCNVSIIRAYPKLMDLIELDISYLRKDECKLDEYDVAIITGGA--CMNEP 63

Query: 96  ALRAWQSAPDPK--ICISYGACGNSGGIFHDLYCVWGG-----------TDKIVPVDVYI 142
            +         K    +++G+C    GI    +C  G             + ++ VD  I
Sbjct: 64  RILEELKEIREKAHTVVAFGSCATFSGILR--FCRGGQEPRPDHRNFQPINSVIKVDYSI 121

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIH 168
           PGCPPTP      F   +   E+++ 
Sbjct: 122 PGCPPTPQMLQSFFKFYINGDERRLR 147


>UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2 Tax=Roseiflexus
           RepID=A5UWN9_ROSS1
          Length = 127

 Score = 42.7 bits (99), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 12/113 (10%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRA 99
           VYR + G C GC++E+ A L+         I    +P  AD+LL TG +T   +   +  
Sbjct: 4   VYRFNTGSCGGCDLEVIAALA-----AAADIDWAATPHEADVLLLTGPLTTDTKKAFMAL 58

Query: 100 WQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI--VPVDVYIPGCPPTPA 150
            Q        I+ G C   G  F       GG   I  + V + + GCPPTP 
Sbjct: 59  LQELDHRAPIIAVGRCAIDGHPFG-----RGGVAVIPNLTVHLSLDGCPPTPT 106


>UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota RepID=A6UVU9_META3
          Length = 227

 Score = 40.8 bits (94), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 20/128 (15%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDA----ERFGIKVVPSPRH---ADILLFTGAVTRAM 92
           V  V    C GC + +  T   L D     +    + +   R    ADI+L  G+V    
Sbjct: 4   VAHVQLSSCCGCLVSLTDTYEKLLDVLGAIDLVYSQTIADAREIPEADIILVEGSVCLDD 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK-----------IVPVDVY 141
                 A       KI ++ GAC  +GGI    +C  G   K           +V  D+ 
Sbjct: 64  HHAMEIAQDVGKKAKILVALGACAATGGITR--FCRGGQMSKPIHSSFSPITEVVKCDLA 121

Query: 142 IPGCPPTP 149
           IPGCPP+P
Sbjct: 122 IPGCPPSP 129


>UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax=Euryarchaeota
           RepID=FRHG_METBF
          Length = 259

 Score = 39.7 bits (91), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 23/138 (16%)

Query: 47  GCNGCEIEIFAT---LSPLFD--AERFGIKVVPSPRH---ADILLFTGAVTRAMRSPALR 98
           GC GC + +      L  + D  A+      +   RH    D+ L  G+V          
Sbjct: 14  GCTGCLVSLADNNLGLIKILDDYADLVYCLTLADVRHIPEMDVALVEGSVCLQDHESVED 73

Query: 99  AWQSAPDPKICISYGACGNSGGIF------------HDLYCVWGGTDKIVPVDVYIPGCP 146
             ++    KI ++ G+C   G I             H+ Y   G    ++ VDVYIPGCP
Sbjct: 74  IKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHESYLPIG---DLIDVDVYIPGCP 130

Query: 147 PTPAATLYGFAMALGLLE 164
           P+P        MA  LLE
Sbjct: 131 PSPELIRNVAVMAYLLLE 148


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacter...   366   e-100
UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bac...   297   2e-79
UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobac...   289   6e-77
UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5        274   2e-72
UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen l...   232   8e-60
UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase sma...   221   2e-56
UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen l...   212   7e-54
UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   210   5e-53
UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   209   5e-53
UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-li...   207   4e-52
UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   206   4e-52
UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=c...   205   1e-51
UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteob...   204   2e-51
UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   204   2e-51
UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID...   203   5e-51
UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   203   5e-51
UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   202   8e-51
UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   200   5e-50
UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 T...   199   5e-50
UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   198   1e-49
UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   197   2e-49
UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   197   3e-49
UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=c...   195   1e-48
UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   195   1e-48
UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=...   195   1e-48
UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=...   194   2e-48
UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   194   2e-48
UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   193   4e-48
UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=...   193   6e-48
UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=P...   192   1e-47
UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   192   1e-47
UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=B...   191   1e-47
UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   191   2e-47
UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=F...   191   3e-47
UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   190   3e-47
UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   190   4e-47
UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=...   189   5e-47
UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   189   6e-47
UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   189   7e-47
UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=B...   189   7e-47
UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collins...   189   9e-47
UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyce...   189   1e-46
UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=...   188   1e-46
UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=p...   188   2e-46
UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   188   2e-46
UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=...   187   2e-46
UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collins...   187   3e-46
UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax...   187   4e-46
UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   186   6e-46
UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea R...   186   7e-46
UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   185   1e-45
UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   185   2e-45
UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Ta...   184   2e-45
UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=De...   184   3e-45
UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   183   5e-45
UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   182   7e-45
UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax...   182   9e-45
UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometr...   182   1e-44
UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydr...   182   1e-44
UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 T...   181   2e-44
UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=c...   181   3e-44
UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   180   3e-44
UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd s...   179   9e-44
UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   178   1e-43
UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...   178   2e-43
UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Ep...   178   2e-43
UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=...   177   2e-43
UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit ...   177   3e-43
UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 ...   177   3e-43
UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=N...   177   4e-43
UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria...   177   4e-43
UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteri...   176   6e-43
UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax...   176   7e-43
UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarch...   175   1e-42
UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cy...   175   1e-42
UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfit...   175   1e-42
UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=...   174   2e-42
UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   174   2e-42
UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...   174   3e-42
UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Ta...   173   4e-42
UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=S...   173   5e-42
UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemm...   173   5e-42
UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   172   8e-42
UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=...   171   2e-41
UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=c...   170   3e-41
UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=F...   170   3e-41
UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=...   170   3e-41
UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=P...   170   4e-41
UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=c...   170   5e-41
UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=...   169   7e-41
UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...   169   7e-41
UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ...   169   1e-40
UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...   169   1e-40
UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Pr...   168   1e-40
UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=T...   167   3e-40
UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=T...   167   4e-40
UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=...   166   8e-40
UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   165   1e-39
UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=F...   165   1e-39
UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   164   3e-39
UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (Mbx...   162   8e-39
UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ...   162   8e-39
UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japoni...   162   1e-38
UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   162   1e-38
UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   161   2e-38
UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   160   3e-38
UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   160   3e-38
UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meio...   160   4e-38
UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospiri...   159   6e-38
UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarch...   159   9e-38
UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 ...   158   2e-37
UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea Rep...   158   2e-37
UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=S...   157   3e-37
UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=...   157   3e-37
UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   157   4e-37
UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=T...   156   6e-37
UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermopl...   155   2e-36
UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q...   154   2e-36
UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shige...   154   3e-36
UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   153   7e-36
UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   152   1e-35
UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   152   1e-35
UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   151   2e-35
UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   150   5e-35
UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   150   5e-35
UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=I...   147   4e-34
UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulib...   147   4e-34
UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   145   2e-33
UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit fa...   144   2e-33
UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A...   142   1e-32
UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophi...   141   3e-32
UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=...   140   4e-32
UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=D...   140   4e-32
UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   139   8e-32
UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   139   1e-31
UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN    132   8e-30
UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Glucono...   130   4e-29
UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteria...   124   2e-27
UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax...   123   4e-27
UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax...   120   3e-26
UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetom...   106   8e-22
UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, puta...   105   2e-21
UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulf...    92   2e-17
UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n...    81   4e-14
UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 ...    79   1e-13
UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=G...    77   5e-13
UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 ...    59   2e-07

Sequences not found previously or not previously below threshold:

UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxi...   113   6e-24
UniRef50_C1GND6 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...    80   5e-14
UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=...    75   2e-12
UniRef50_Q6A6I9 NADH dehydrogenase subunit n=2 Tax=Propionibacte...    72   1e-11
UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    72   2e-11
UniRef50_C7J5D7 Os07g0116900 protein n=3 Tax=Oryza sativa RepID=...    70   1e-10
UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota ...    67   6e-10
UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax...    67   8e-10
UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    55   3e-06
UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13...    53   7e-06
UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    53   8e-06
UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 ...    52   2e-05
UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Co...    51   3e-05
UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanoca...    51   3e-05
UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl v...    51   3e-05
UniRef50_A9B2V8 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    51   4e-05
UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=...    51   4e-05
UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subuni...    50   6e-05
UniRef50_Q85WY3 ORF82a n=1 Tax=Pinus koraiensis RepID=Q85WY3_PINKO     50   7e-05
UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subuni...    50   7e-05
UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    50   1e-04
UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    49   2e-04
UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    48   2e-04
UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Ta...    48   3e-04
UniRef50_A7IHL6 Ni Fe-hydrogenase III large subunit-like protein...    47   4e-04
UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomirag...    47   6e-04
UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    47   7e-04
UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit F...    47   7e-04
UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small sub...    46   0.001
UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermo...    46   0.001
UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermoco...    46   0.001
UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria R...    46   0.001
UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    46   0.001
UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    45   0.002
UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subuni...    45   0.002
UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquifica...    45   0.003
UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=...    45   0.003
UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...    44   0.004
UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (...    44   0.005
UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Ta...    44   0.005
UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subuni...    44   0.005
UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=De...    43   0.006
UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 T...    43   0.007
UniRef50_Q1AZS0 Ni Fe-hydrogenase III large subunit-like protein...    43   0.013
UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH    42   0.020
UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria ...    42   0.024
UniRef50_A9E0C1 Putative uncharacterized protein n=1 Tax=Oceanib...    42   0.024
UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=6...    42   0.029
UniRef50_Q0FXV5 Putative uncharacterized protein n=1 Tax=Fulvima...    41   0.036

>UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacteria RepID=HYCG_ECOLI
          Length = 255

 Score =  366 bits (939), Expect = e-100,   Method: Composition-based stats.
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS
Sbjct: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG
Sbjct: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120

Query: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA
Sbjct: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180

Query: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240
           EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE
Sbjct: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240

Query: 241 IVSHLNHVVEEARIR 255
           IVSHLNHVVEEARIR
Sbjct: 241 IVSHLNHVVEEARIR 255


>UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bacteria
           RepID=C7MLM8_CRYCD
          Length = 283

 Score =  297 bits (761), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 146/238 (61%), Positives = 183/238 (76%), Gaps = 4/238 (1%)

Query: 16  PMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS 75
           P  +D+ IA  KA+LL  IKRS Y+YRVDCGGCNGCEIEIF TL+P+FDAERFGIK + S
Sbjct: 37  PKVLDQKIAEAKAALLNDIKRSVYIYRVDCGGCNGCEIEIFGTLTPVFDAERFGIKNMAS 96

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PRHADIL++TGAVTRAMR PALRA+++APDPK+ +SYGACG +GGIFHD YCVWGGTDK+
Sbjct: 97  PRHADILVYTGAVTRAMRLPALRAYEAAPDPKLIVSYGACGCTGGIFHDNYCVWGGTDKL 156

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
            PVDVYIPGCPP+PA T+YGFAMALGLL QK+H +   E + + A I+  D+   LR ++
Sbjct: 157 FPVDVYIPGCPPSPAQTIYGFAMALGLLGQKLHEKHLVEGEGEQAPIMFADIPYKLRCEL 216

Query: 196 DREARRLAGYRYGRQIADDYLTQL----GQGEEQVARWLEAENDPRLNEIVSHLNHVV 249
           +REARR+AGY YGR + D ++  L    G+    V   +EAE+DPR  EI + L  ++
Sbjct: 217 EREARRMAGYVYGRDLVDTFMQALEPEDGKVLTSVDALIEAESDPRKVEIYADLKQIL 274


>UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobacteria
           RepID=C6ANV6_AGGAN
          Length = 258

 Score =  289 bits (739), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 155/247 (62%), Positives = 197/247 (79%), Gaps = 5/247 (2%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           P   NGI  P ++DE+IA MK +LLK I+RSAYVYRVDCGGCNGCEIEIF+T++P+FDAE
Sbjct: 6   PMPVNGISTPFSIDENIAKMKQALLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPVFDAE 65

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           RFGIKVV SPRHADILLFTG+VTRAMR+PA+RA+Q+APDPKICI+YGACG  GGIFHDLY
Sbjct: 66  RFGIKVVASPRHADILLFTGSVTRAMRTPAMRAYQAAPDPKICIAYGACGCGGGIFHDLY 125

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
           CVWGG+D+IVPVDVYIPGCPPTPAAT+YGFAMALGLL+QK+  +         A++    
Sbjct: 126 CVWGGSDQIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLKGKQEKADPNAEAKLRFPT 185

Query: 187 MVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEE-----QVARWLEAENDPRLNEI 241
           +   LR+ ++REARRLAGYR G  IA+ ++  + + ++     ++  +LE E DPRL+EI
Sbjct: 186 IPLDLRISLEREARRLAGYRQGGNIANQFMAMMSEDDKVPFGVRLGEYLEREADPRLSEI 245

Query: 242 VSHLNHV 248
           ++ L+ +
Sbjct: 246 INRLHAI 252


>UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5
          Length = 274

 Score =  274 bits (700), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 114/247 (46%), Positives = 158/247 (63%), Gaps = 11/247 (4%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
           +P  +     + +    L K IKRS  VYR+DCG CNGCEIEIFA ++P++D ERFG K+
Sbjct: 6   VPQDIKTANDLTAKLEHL-KNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKL 64

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
           V +PRHADIL+ +G VTR M  P LRA+++APDPKI +++GACG+SGGIFHD Y VWGG 
Sbjct: 65  VANPRHADILICSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSSGGIFHDAYSVWGGI 124

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPL- 191
           DKI+PVDVYIPGCPP PA+ +YG  MALG+++QK+H +   +    P  +    +   L 
Sbjct: 125 DKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQKLHKKSYEDDSTLPPPVEKSVIGDILF 184

Query: 192 RVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVA------RWLEA---ENDPRLNEIV 242
              +  E++RL  Y +GR + D Y++ +    +           LEA   E DPR  E +
Sbjct: 185 ERDLQAESKRLMSYIFGRALFDKYMSAIKTASDVHDPNSARTAMLEAIKKEEDPRYAECM 244

Query: 243 SHLNHVV 249
           + L++ V
Sbjct: 245 ALLHNDV 251


>UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=3
           Tax=cellular organisms RepID=B6YT72_THEON
          Length = 266

 Score =  232 bits (592), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 79/239 (33%), Positives = 127/239 (53%), Gaps = 26/239 (10%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S +V+ VD G CNGC+IEI   L+P +DAER GIK+VPSPRHAD LL +G +TR     
Sbjct: 5   KSVWVFHVDSGSCNGCDIEILDVLTPYYDAERLGIKLVPSPRHADALLVSGPLTRQTYYA 64

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV-------------WGGTDKIV----- 136
              A+++  P P+I ++ G C +SGGIF++ Y +              GG + ++     
Sbjct: 65  VKAAYEAMPPKPRIVVAIGTCASSGGIFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGK 124

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD 196
             D+YIPGCPP+P   LYG A  LGL E+K+        DE    +    + + + + + 
Sbjct: 125 KPDMYIPGCPPSPEEILYGLAQLLGLKEKKMKGE-YYYADEIEFVLPERPIEERIYLTLR 183

Query: 197 REARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
              RR+ GY    ++ +D++  + + +E            RL+E+V       +++R++
Sbjct: 184 ESLRRVVGYFDREKVLEDFMALVEKAQESENP------RERLHELVIGYFLREKDSRVK 236


>UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase small subunit n=13
           Tax=cellular organisms RepID=B6YU96_THEON
          Length = 175

 Score =  221 bits (562), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 97/170 (57%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           P D N      +  E +    A L + I RS +V+ V+ G CNGC+IEI A L+P +DAE
Sbjct: 6   PADQNRTNGTTSEREMLEKRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAE 65

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           RFG+K+V SPRHAD+LL TG VT          ++  PDPKI I+ G+C   G +F++  
Sbjct: 66  RFGVKLVGSPRHADVLLVTGPVTDQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVFYESP 125

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
                   I+PVDVY+PGCPP P A LYG  +AL  L + +    P   +
Sbjct: 126 FTNAPLSNIIPVDVYVPGCPPRPEAILYGVVLALEKLAKILKGEVPEGEE 175


>UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=1
           Tax=Thermococcus onnurineus NA1 RepID=B6YTX0_THEON
          Length = 273

 Score =  212 bits (541), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 30/241 (12%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS +V+ ++ G CNGC+IEI   L+P +D ERFGIK+V SPRHA  LL +G +TR     
Sbjct: 8   RSIWVFHLNTGSCNGCDIEIIDVLTPFYDVERFGIKLVGSPRHAHALLVSGPLTRQAYYG 67

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV---------------WGGTDKIVP-- 137
           A    ++  P+P++ ++ G C  SGGIF++ Y V                GG  +++   
Sbjct: 68  AKETIKAMPPEPRVIVAIGTCTCSGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADL 127

Query: 138 --------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
                     +YIPGCPP P   +YG A  +GL+E+K+  +   + +  P ++  G + +
Sbjct: 128 RDEGEKVGPVIYIPGCPPRPEEIIYGIAQLVGLVEKKLSYQEYSD-ELVPFKLPEGPLEE 186

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVV 249
            +R+ +    R L GY    +I +D++  + + E+        E   RL +  +     V
Sbjct: 187 RIRLTLMERLRHLVGYLDREKILEDFMGLVKEAEKSENP---REELARLVKDYAAKCGDV 243

Query: 250 E 250
            
Sbjct: 244 R 244


>UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IG01_9CLOT
          Length = 266

 Score =  210 bits (534), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 90/165 (54%), Gaps = 9/165 (5%)

Query: 8   RDANGIPVPMTVDESI---------ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAT 58
           RD         +DE I           +   + KK  RS  +  VD G CNGC+ EI A 
Sbjct: 102 RDLLRATPLYVIDEEINGTDYELIGKKLNEKVAKKFGRSLNIREVDAGSCNGCDYEIQAL 161

Query: 59  LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
             P  D ERFGI  V SPRHAD+LL TG V+R M    ++ + + P PK+ ++ GAC  S
Sbjct: 162 NGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVVAAGACACS 221

Query: 119 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
           GG+F D Y    G D I+PVDVYIPGCPP P A +YG    +G L
Sbjct: 222 GGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILKGIGRL 266


>UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=638 Tax=cellular organisms
           RepID=NDUS7_HUMAN
          Length = 213

 Score =  209 bits (533), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           P+     P P +  E + +    L+   +RS+        G   C +E+    +P +D +
Sbjct: 47  PKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTF--GLACCAVEMMHMAAPRYDMD 104

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           RFG+    SPR +D+++  G +T  M     + +   P+P+  +S G+C N GG +H  Y
Sbjct: 105 RFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSY 164

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
            V  G D+IVPVD+YIPGCPPT  A LYG       ++++  
Sbjct: 165 SVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERR 206


>UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-like) n=1
           Tax=uncultured methanogenic archaeon RC-I
           RepID=Q0W2C0_UNCMA
          Length = 247

 Score =  207 bits (526), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 98/160 (61%), Gaps = 4/160 (2%)

Query: 13  IPVPMTVDESIASMKASLLKKIK----RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
           +      D  + S    L KKIK    RS  +  VD G CNGCE+E+ +  + ++D ERF
Sbjct: 88  LASKAKPDFDVESSGRELEKKIKKAFGRSLAIREVDAGSCNGCEVEVNSLSNAIYDIERF 147

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           G+ +V SPRHAD LL TG VTR M    ++++ + PDPK+ I+ GAC  +GGIF D Y V
Sbjct: 148 GLHIVASPRHADALLVTGPVTRNMERGLMQSYNATPDPKMVIAMGACAITGGIFRDSYAV 207

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           + G D +VPVDVYIPGCPP P A + G  +A+   E+K  
Sbjct: 208 YNGVDALVPVDVYIPGCPPRPQAIIQGIMLAIDRWEEKRK 247


>UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=57 Tax=cellular organisms
           RepID=NDUS7_MOUSE
          Length = 224

 Score =  206 bits (525), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 2/155 (1%)

Query: 16  PMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS 75
           P +  E + +    L+   +RS+        G   C +E+    +P +D +RFG+    S
Sbjct: 67  PRSRAEYVVTKLDDLINWARRSSLWPMTF--GLACCAVEMMHMAAPRYDMDRFGVVFRAS 124

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G +T  M     + +   P+P+  +S G+C N GG +H  Y V  G D+I
Sbjct: 125 PRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRI 184

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           VPVD+Y+PGCPPT  A LYG       ++++   +
Sbjct: 185 VPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLK 219


>UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=cellular organisms
           RepID=A3DKH2_STAMF
          Length = 165

 Score =  205 bits (521), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/138 (49%), Positives = 91/138 (65%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
             S  K I+ + ++   + G CNGC+IE+ A ++PL+D ERFGIK+ PS RHADIL+ TG
Sbjct: 20  GDSKYKIIRYTPWLIHFNTGACNGCDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTG 79

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
           AVT+       R ++  PDPK  ++ GAC  SGG+FH+ Y V  GTDK++PVD+Y+PGCP
Sbjct: 80  AVTKKAAERLKRLYEQMPDPKFVVAVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCP 139

Query: 147 PTPAATLYGFAMALGLLE 164
           P P A L G    L  LE
Sbjct: 140 PRPEAILDGIVKLLKRLE 157


>UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteobacteria
           RepID=B9L8U0_NAUPA
          Length = 164

 Score =  204 bits (520), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/140 (43%), Positives = 86/140 (61%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           K  K+S ++   + GGCNGC+IEI A L+P +D ERFG+    +P+ +DILL TG VT+ 
Sbjct: 6   KFRKKSPWILHYNTGGCNGCDIEILAALAPKYDIERFGMLNRGNPKQSDILLVTGPVTKR 65

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
            R    R +   P+PK+ ++ GAC + GGIF D Y V  G D I+PVDV+IPGC P   A
Sbjct: 66  CRDVLRRLYLEMPEPKVVVAMGACAHGGGIFRDFYHVENGVDNIIPVDVWIPGCAPRVEA 125

Query: 152 TLYGFAMALGLLEQKIHARG 171
            + G   A+ + E+K   + 
Sbjct: 126 VIDGMVEAVKIWEKKTKEKE 145


>UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=14 Tax=Bacteria
           RepID=B1ZSE5_OPITP
          Length = 279

 Score =  204 bits (520), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/157 (45%), Positives = 97/157 (61%), Gaps = 4/157 (2%)

Query: 14  PVPMTVDESIASMKASLLKKI----KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG 69
           P      E   ++   L  +I     RS ++  VD G CNGCE+EI A   P++D ERFG
Sbjct: 123 PQISETGEKTEALGRELQNRIHSLLGRSLHIREVDAGSCNGCEVEINALSGPIYDLERFG 182

Query: 70  IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
           I +V SPRHAD+LL TG VTR M     + + + P+P++ ++ GACG SGG+F   Y   
Sbjct: 183 IHLVASPRHADMLLVTGPVTRNMELALRKTYDATPEPRLVVAVGACGCSGGMFGRNYATC 242

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
           G  D ++PVDVYIPGCPP P A L+G  +A+G LE++
Sbjct: 243 GSVDSVLPVDVYIPGCPPNPFALLHGILLAVGRLEKR 279


>UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID=B6IT61_RHOCS
          Length = 196

 Score =  203 bits (516), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 92/159 (57%), Gaps = 1/159 (0%)

Query: 4   LLGPRDANG-IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           L GPR   G  P   TV+     +  +  +++ RS  + +VD G CN CE+EI A  +P+
Sbjct: 10  LKGPRTIAGPAPADATVEALARRLDTASRRRLGRSLAIRQVDAGSCNACEMEIHALNNPV 69

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +D ERFG   V SPRHAD+LL TG VT  MR   L+ W++ PDPK  ++ G C   GG F
Sbjct: 70  YDLERFGFSFVASPRHADVLLVTGPVTTNMREALLKTWEATPDPKWVVALGQCAIDGGPF 129

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
            D Y V GG +K+VPVD+ IPGCPP P   L      + 
Sbjct: 130 ADSYAVVGGVEKVVPVDLMIPGCPPRPVDILAALVALIE 168


>UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Eukaryota
           RepID=NDUS7_RECAM
          Length = 182

 Score =  203 bits (516), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 2/148 (1%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHAD 80
           E I S    L+   ++ +        G   C +E+  + +  +D +RFGI   PSPR +D
Sbjct: 30  EFIVSKMDELVNWARKGSLWPMTF--GLACCAVEMMHSAASRYDLDRFGIIFRPSPRQSD 87

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +++  G +T  M     + +    +P+  +S G+C N GG +H  Y V  G D+IVPVD+
Sbjct: 88  VMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDI 147

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIH 168
           Y+PGCPPT  A LYG       +++   
Sbjct: 148 YVPGCPPTAEALLYGLLQLQKKIKRSRK 175


>UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A1ASR2_PELPD
          Length = 179

 Score =  202 bits (514), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 1/162 (0%)

Query: 26  MKASLLKK-IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
           M  +L +K   RS +VY  + GGCNGC+IE+   L+P +D ERFGIK+V SPRHAD++L 
Sbjct: 1   MLKNLCQKVFGRSLWVYHANSGGCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLC 60

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            G   R+      RA+ + P PK+  + G+C   GGI+HD Y V G  +K++PV+ Y+PG
Sbjct: 61  QGPAMRSTGKALQRAYAAMPGPKLVFAIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPG 120

Query: 145 CPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
           CPP P A ++G A+A GL+++K       ++ + P    H +
Sbjct: 121 CPPRPEAIIWGVAVAAGLVDKKTAPVEFKQVSDFPMPRYHPE 162


>UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A9KS72_CLOPH
          Length = 144

 Score =  200 bits (508), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 62/136 (45%), Positives = 87/136 (63%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +K +K+S ++   D   CNGC+IE+ A L+PL+D ERFGI    +P+HADILL TG+V  
Sbjct: 1   MKFVKKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADILLITGSVNE 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
                  + ++   +PKI ++ G C NSGGIF + Y V GG DK++PVDVY+PGC   P 
Sbjct: 61  QNIPVVKQIYEQMAEPKIVVAVGICANSGGIFAECYNVSGGVDKVLPVDVYVPGCAARPE 120

Query: 151 ATLYGFAMALGLLEQK 166
           A + G    L +LE+K
Sbjct: 121 AIIDGVVKGLAILEEK 136


>UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 Tax=Thermococcus
           RepID=C5A2Q7_THEGJ
          Length = 283

 Score =  199 bits (507), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 120/244 (49%), Gaps = 34/244 (13%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS YV+ +D G CNGCEIE+F  L+P +DAER G+++  SPRHA  +  TG +TR     
Sbjct: 4   RSLYVFHLDTGACNGCEIELFDILTPYYDAERLGVRLAASPRHAHAMAATGPLTRQAYYA 63

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV---------------WGGT------- 132
           A  A ++  P P+I ++ G C  SGGIF++ Y +                GG        
Sbjct: 64  AKEAIKAMPPKPRIIVAIGTCACSGGIFYNGYPIYRRPESGREGQEYPRRGGIFELVQDL 123

Query: 133 ---DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
               + V   VYIPGCPP P   LYG A+ALGL+E+++      E  E   E+    + +
Sbjct: 124 RDEGEYVGPVVYIPGCPPRPEEILYGVALALGLVEKQVKGEYYTE--EVGFELPEYPIEE 181

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQ------VARWLEAENDPRLNEIVS 243
            +R+ +    + + GY    ++ +D++  + + +        +  +     DPR++  + 
Sbjct: 182 RIRLSLRERLKYVVGYFDREKVLEDFMELVAKAKSAEELHGLIQGYCLKNPDPRVSLAMR 241

Query: 244 HLNH 247
            L  
Sbjct: 242 VLER 245


>UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_HELMI
          Length = 175

 Score =  198 bits (504), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VV 73
           V   + ++I       +    R   ++ +   G   C IE+ AT +  FD  RFG +   
Sbjct: 15  VDELIKKNIIMTSLEAVFNWARGNSLWPL-SSGLACCAIEMMATGASRFDMARFGYEVFR 73

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
           PSPR AD+++  G +T  M     R ++  P+PK  I+ G+C  +GG F D Y V  G D
Sbjct: 74  PSPRQADLIIIAGTLTWKMAPAIQRVYEQMPEPKWIIAMGSCACTGGPFADSYAVVPGVD 133

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           K++PVDVY+PGCPP P A L GF      ++    
Sbjct: 134 KVIPVDVYVPGCPPRPEALLDGFLKLKAKIQNPAK 168


>UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=A6UVJ5_META3
          Length = 246

 Score =  197 bits (502), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/141 (46%), Positives = 84/141 (59%)

Query: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
           T+ E   S   S+ K   +S Y+  V  GGCN C+ +I    +P++D  RFGIK V SPR
Sbjct: 103 TLKEPDTSSLKSIKKLFGKSVYLREVCAGGCNACDADINVLNTPVYDLSRFGIKFVASPR 162

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
           HAD L+ TG VT+ M    ++ + + P PK  I+ G C  SGGIF +   V GG DKI+P
Sbjct: 163 HADGLVITGPVTKNMELALMKTYDATPSPKFVIAVGTCAISGGIFRENEEVVGGVDKILP 222

Query: 138 VDVYIPGCPPTPAATLYGFAM 158
           VD+YIPGCPP P   LY F  
Sbjct: 223 VDLYIPGCPPHPFTNLYAFVK 243


>UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774
           RepID=B8J1E3_DESDA
          Length = 185

 Score =  197 bits (501), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 7/160 (4%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S ++   DCG CNGC+IE+ A L+P++D ERFG+    +P+HAD+LL TG V    R  
Sbjct: 14  KSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVNAGNPKHADVLLVTGTVNHRNRHV 73

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
             + ++  P PK  IS GAC  SGG+F D Y V  G   ++PVDV++PGCPP P A + G
Sbjct: 74  LKQIYEQMPSPKAVISLGACNLSGGVFKDTYNVLNGAHNVIPVDVFVPGCPPKPEAIIDG 133

Query: 156 FAMALGLLEQKI-------HARGPGELDEQPAEILHGDMV 188
              ALG+L+ K+           PG+ D  PA     +  
Sbjct: 134 VVEALGVLKAKMGMGPVPQATFMPGDEDGTPAGARDEEAP 173


>UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=cellular organisms
           RepID=NUOB_GRABC
          Length = 194

 Score =  195 bits (495), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA 79
           D+         L    R+  ++ +  G    C +E+     P +D +RFG+    SPR +
Sbjct: 43  DKGFVVANLDKLVNWARTGSLWPMTFG-LACCAVEMIHAYMPRYDLDRFGVIPRASPRQS 101

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+++  G +T  M     R +   P+P+  IS G+C N GG +H  Y V  G D+IVPVD
Sbjct: 102 DVMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 161

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           VY+PGCPPT  A +YG       L++KI   G
Sbjct: 162 VYVPGCPPTAEALVYGIMQ----LQKKIRRTG 189


>UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=9 Tax=Bacteria
           RepID=B2IID4_BEII9
          Length = 177

 Score =  195 bits (495), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF 63
           L  P      P    +    A +      ++ RS  +  VD G CNGCE+EI A  +  +
Sbjct: 9   LAKPPLTEAGPTDGEIAALAAELDHLARSRLGRSLAIREVDAGSCNGCELEINALGNAFY 68

Query: 64  DAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH 123
           D ERFG++ V SPRHAD+LL TG VT  MR   LR + + P+PK  ++ G C    G+F 
Sbjct: 69  DLERFGLRFVASPRHADVLLVTGPVTHNMREALLRTYDATPNPKWVVAAGTCALGEGVFA 128

Query: 124 DLYCV-WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
           + Y    GG   ++ VD+YIPGCPPTP   L G    +  
Sbjct: 129 ESYACQKGGVSAVIAVDLYIPGCPPTPTDLLKGLLALITK 168


>UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=Desulfotomaculum
           acetoxidans DSM 771 RepID=C8W241_DESAS
          Length = 236

 Score =  195 bits (495), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 97/159 (61%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           +G  +   +  P + ++   +++  + K   RS ++  VD G CNGC+ EI +  +P++D
Sbjct: 78  IGETEVPVLTAPASAEDLGRALREKIKKICHRSLHIRYVDAGACNGCDFEINSMTNPVYD 137

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD 124
            +++G+  V SPRHAD+LL TG VTR +     + +++ P P + ++ GAC   GG+F +
Sbjct: 138 IQQYGVDFVASPRHADMLLVTGVVTRNLEIALHKTYEACPRPALVVAVGACACGGGVFKE 197

Query: 125 LYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            Y   GG DK +PVDVY+PGCPPTPA  + G   A+G L
Sbjct: 198 AYASGGGVDKFLPVDVYVPGCPPTPAQIIKGILTAIGRL 236


>UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=NUOB1_THEYD
          Length = 199

 Score =  194 bits (494), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 2/137 (1%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             R + ++ +  G    C IE+ AT +  +D +RFGI +  +PR AD+++  G VT+ M 
Sbjct: 37  WGRCSSLWPLTFG-LACCAIEMMATAASHYDLDRFGIIMRATPRQADVMIIAGTVTKKMA 95

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
              +  +   P+P+  I+ G+C  SGGIF + Y    G D+I+PVDVYIPGCPP P A +
Sbjct: 96  PVIVNLYHQMPEPRYVIAMGSCACSGGIF-NTYSTVQGVDEILPVDVYIPGCPPRPEALI 154

Query: 154 YGFAMALGLLEQKIHAR 170
            G       ++ + H +
Sbjct: 155 EGLLKLQEKIKTEPHKK 171


>UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=54 Tax=cellular
           organisms RepID=B2A054_OPITP
          Length = 338

 Score =  194 bits (493), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/136 (42%), Positives = 85/136 (62%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +  +++S ++   D   CNGC+IE  A L+PL+D ER G+    +P+HADI L TGAV  
Sbjct: 1   MLGLRKSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVINTGNPKHADIFLVTGAVNE 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
             +      +   P+PK+ ++ G C +SGGIF D Y + GG D+++PVDVY+PGC   P 
Sbjct: 61  QSKEVIRNIYHQLPEPKVVVAIGVCASSGGIFRDCYNIAGGVDRVIPVDVYVPGCAARPE 120

Query: 151 ATLYGFAMALGLLEQK 166
           A + G   ALG+LE+K
Sbjct: 121 AIIDGVVQALGVLERK 136


>UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NUN9_HALUD
          Length = 183

 Score =  193 bits (491), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 3/160 (1%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           M   +     RS ++  ++CG CNGC+IE    L P +D ERFGI+   +PRHAD+L+ T
Sbjct: 1   MGRIIDWARNRSPWILHMNCGSCNGCDIETLDALMPRYDVERFGIQQKDTPRHADVLVAT 60

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G VT+ M     R ++  P+PK+ I+ G+C  +GG+F D Y    G D ++PVD+Y+PGC
Sbjct: 61  GPVTKQMAPRLERIYEQMPEPKLVIAAGSCAATGGVFQDCYNCHEGIDDVIPVDMYVPGC 120

Query: 146 PPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHG 185
           P +P   + G      LLE+         L     EI+ G
Sbjct: 121 PISPETLIDGIVA---LLEEAGQEAKAERLAAAKPEIVQG 157


>UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=Bacteria
           RepID=NUOB2_CHLT3
          Length = 195

 Score =  193 bits (490), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 7/182 (3%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           + +   ++L   + S+        G   C IE+ AT +  +D ERFGI    SPR +D++
Sbjct: 14  VITAAENVLNWARLSSLWPM--GFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLM 71

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD-LYCVWGGTDKIVPVDVY 141
           +  G VT  M    +R ++  P+P+  +S G+C N GG + +  Y V  G D+I+PVDVY
Sbjct: 72  IVAGTVTFKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVVKGVDRIIPVDVY 131

Query: 142 IPGCPPTPAATLYGFAMALGLL-EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
           +PGCPP P A + G      L+ E+K        ++    + +     + + V+    A+
Sbjct: 132 VPGCPPRPEALIGGLMKVQELIREEKFAGDRREAIERLKPKKVKA---EDVIVETSASAK 188

Query: 201 RL 202
           +L
Sbjct: 189 KL 190


>UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=Pirellula staleyi
           DSM 6068 RepID=D2R6Y4_9PLAN
          Length = 227

 Score =  192 bits (488), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPR 77
           V+E++ +          R + ++ +  G    C IE+ A  +  +D +RFG      +PR
Sbjct: 30  VEENVFTTSVEQAINWARQSSIWPMTFG-LACCAIEMMAAGASRYDMDRFGAGAFRATPR 88

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-FHDLYCVWGGTDKIV 136
            AD+++  G VT  M S   R +   PDPK  I+ GAC   GG  F   Y V  G D +V
Sbjct: 89  QADLMIVAGTVTYKMASRVRRLYNMMPDPKFVIAMGACTVGGGPYFKWGYHVVKGVDLVV 148

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLE--QKIHARGPGELDEQPAEILHGDMV 188
           PVDVYIPGCPP P A L G       ++  +    +  G       E +  ++ 
Sbjct: 149 PVDVYIPGCPPRPEALLEGLMRIQDKIKGHRIAKKKSTGSGFLTVGEKVEDELP 202


>UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_CLOB8
          Length = 169

 Score =  192 bits (487), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 7/155 (4%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADI 81
           +  +  +L      S +       G   C IE+ A     +D  RFG +    SPR AD+
Sbjct: 21  LTKLDDTLNYFRAHSFWPL---TFGLACCAIEMMAAGGARYDIARFGYEVFRASPRQADL 77

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G +T  M     + +   P+PK  I+ G+C  SGG F D Y V  G D  +PVDVY
Sbjct: 78  MIVAGTITEKMAPIVKKIYDQMPEPKWVIAMGSCATSGGPFVDSYNVVPGADTFLPVDVY 137

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
           IPGCPP P A ++G       +   IH +  G  +
Sbjct: 138 IPGCPPRPEALIHGLLTLKEKI---IHPKEVGRSE 169


>UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=Bacteroidales
           RepID=NUOB_BACV8
          Length = 198

 Score =  191 bits (486), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/148 (36%), Positives = 73/148 (49%), Gaps = 2/148 (1%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHADILLFTGAVTRA 91
              RS  ++ +     + C IE  A  +  +D  RFG +V   SPR AD+++  G +T  
Sbjct: 46  NWGRSNSLWPLTF-ATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIMVAGTITHK 104

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M     R +    DPK  I+ G C  SGG F   Y V  G DKI+PVDVYIPGCPP P A
Sbjct: 105 MAPVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEA 164

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQP 179
            LYG       ++ +    G    + +P
Sbjct: 165 LLYGMIQLQRKVKLEKFFGGVNRKENEP 192


>UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Proteobacteria RepID=D0L1N9_HALNC
          Length = 274

 Score =  191 bits (485), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 89/164 (54%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
            D + +  P T D+ +       L    RS ++  VD G CNGCE EI A L+P ++  R
Sbjct: 108 ADLSRLARPATPDKKLEEKWQKSLAGFGRSLHIRHVDAGSCNGCESEISALLNPFYNLHR 167

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
            G+   PSPR AD+LL TG VT  MR P LR +++ P+P+  ++ G C   GG     Y 
Sbjct: 168 LGVFFTPSPRFADLLLVTGPVTEVMREPLLRTFEAMPEPRWVMALGTCATGGGTNGGGYA 227

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
              G D I+PVD+++PGCPP PAA +    + L    Q++H   
Sbjct: 228 CHQGLDGILPVDIWLPGCPPNPAAIIEALLVLLDRRPQQVHGGR 271


>UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=Fibrobacter
           succinogenes subsp. succinogenes S85 RepID=C9RJJ6_FIBSS
          Length = 211

 Score =  191 bits (484), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 14/203 (6%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHAD 80
           +I +     L    RS  ++    G    C IE  +T    +D  R G + V  +PR +D
Sbjct: 9   NIITSSLDFLVNWGRSNSLWPFPYG-TACCAIEFMSTEVGRYDLSRIGSEYVRFTPRQSD 67

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +LL  G +T        R ++   +P+  I+ GAC +SGG F+D YC   G D I+PVDV
Sbjct: 68  VLLVAGTITYKQAPILKRIYEQMAEPRWVIAMGACASSGG-FYDCYCTVPGIDHIIPVDV 126

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
           YI GCPP P A    F  A+  L++K+         +Q AE +  + ++ ++VK   EA+
Sbjct: 127 YIGGCPPRPEA----FFDAMFDLQKKVKDES---FMKQRAESVK-EQLEMIKVKT-AEAK 177

Query: 201 RLAGYRYGRQIAD--DYLTQLGQ 221
           R A      ++ D  D++ +  +
Sbjct: 178 REAAACAREKVVDIKDFMKEKQE 200


>UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=cellular
           organisms RepID=A7I7C9_METB6
          Length = 172

 Score =  190 bits (483), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/171 (35%), Positives = 86/171 (50%), Gaps = 7/171 (4%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLK----KIKRSAYVYRVDCGGCNGCEIEIF 56
           +S +LG +    +PV    DE +  +   + +    +  RS  +  +D G  N  EIEI 
Sbjct: 5   VSCMLGKKVTGPLPV---RDEELERIGREIRREINARFGRSLAIRELDAGSDNAAEIEIN 61

Query: 57  ATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACG 116
              +  +D ERFGI  V SPRHAD+LL TGA+T  M   A + + + P PK  ++ G   
Sbjct: 62  NLSNAYYDVERFGISFVASPRHADVLLVTGAITCNMAIAAQKTYDAMPSPKFVVAVGDDA 121

Query: 117 NSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
             GGI+   Y V GG D I PVD+ IPG PP P   L G    +    ++ 
Sbjct: 122 CDGGIYKGTYAVLGGADAIFPVDLKIPGNPPAPIQILTGLLALMRSAGKRT 172


>UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_HYDS0
          Length = 177

 Score =  190 bits (483), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           I +    LL   +R+A        G   C IE+    +  FD +R G+    SPR AD+L
Sbjct: 11  ITTTVDELLSWGRRNALWPV--TIGLACCAIEMMHAAASRFDIDRLGMIFRASPRQADVL 68

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           +  G V   +       W   P+PK CIS G C ++GG F   Y    G D+I+PVDVYI
Sbjct: 69  IVAGTVVNKVAPMLKLVWDQMPEPKWCISMGGCASAGGPFP-TYSTLQGIDRIIPVDVYI 127

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           PGCPPTP   +YG       + +K   R     +E   ++
Sbjct: 128 PGCPPTPQGLIYGLLELQRKIREKKVTRYEKAFEEFKKDL 167


>UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=Bacteria
           RepID=NUOB2_ACIBL
          Length = 202

 Score =  189 bits (481), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 9/165 (5%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRA 91
              R + V+ +  G    C IE+    +  +D  RFG +   PSPR +D+++  G VT  
Sbjct: 22  NWARKSSVWPMTFG-LACCAIEMITASTARYDIARFGSEVFRPSPRQSDLMIVAGTVTLK 80

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M     R ++  P+PK  ++ GAC + GG F + Y    G DKIVPVDVY+ GCPP P  
Sbjct: 81  MAPVVQRIYEQMPEPKWVMAMGACASVGGPF-NTYATLQGVDKIVPVDVYVVGCPPRPEN 139

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD 196
             YG       ++    A+ P ++       L   M+   R  V 
Sbjct: 140 LFYGLLKLQDKIDHMTLAKRPTDVR------LDETMLDEFRKSVR 178


>UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Aquificales
           RepID=B2V8R1_SULSY
          Length = 173

 Score =  189 bits (481), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 87/156 (55%), Gaps = 7/156 (4%)

Query: 19  VDESIASMKASLLKKIKR----SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            DE++  +   L +KI +    S  +  VD G CN CE EI A  +P +D ERFG+K V 
Sbjct: 21  RDENVEILGKQLKEKIDKYFQGSFAIREVDSGSCNACEYEISALSNPYYDIERFGVKFVA 80

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SP+HAD ++ TG +TR M    ++A+++ P+PK  I+ G C   GG F   Y V  G   
Sbjct: 81  SPKHADAIMITGCLTRNMYEAVMKAYENVPNPKFIIAVGDCALDGGTFKGSYAVMDGIKD 140

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
            +P+D++I GCPP P   + G    L LL +K   R
Sbjct: 141 KLPIDIWIKGCPPEPIDIISGL---LILLNKKFEDR 173


>UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           carboxidivorans P7 RepID=C6PUG1_9CLOT
          Length = 242

 Score =  189 bits (481), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 86/143 (60%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +K  +  K KRS  +  VD G CNGC +E+  T +  +D  R+GIK   SPRHAD ++
Sbjct: 100 QEVKEKIYSKFKRSLVLRSVDTGSCNGCMMEVSNTQNTYYDLSRYGIKFAASPRHADGIV 159

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG VT  M+   ++ + +  DPKI I+ G+C  SGGIF D Y V    ++I+ V++ IP
Sbjct: 160 VTGPVTLNMKEALIKTYDAISDPKIVIAVGSCAYSGGIFKDGYSVCEDLNEILKVNLVIP 219

Query: 144 GCPPTPAATLYGFAMALGLLEQK 166
           GCPP+P A LYG    +  L+++
Sbjct: 220 GCPPSPQAILYGMLKIINKLDEE 242


>UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=Bacteria
           RepID=NUOB_RUBXD
          Length = 251

 Score =  189 bits (480), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 27/232 (11%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHAD 80
           +I +     L    R   ++ +  G    C IE+ +T     D ERFG      SPR AD
Sbjct: 11  NIITTSTDKLFNWARKNSLWPLQFG-LACCAIEMMSTGMAHNDLERFGAGFFAGSPRQAD 69

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +++ +G V+  M     R ++  P+PK  I+ GAC  SGG F D Y V  G D+++PVDV
Sbjct: 70  VMIVSGTVSTKMAERMTRLYEQMPEPKWVIAMGACAISGGPFLDGYSVLMGADRVIPVDV 129

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD------MVQPLRVK 194
           Y+PGCPP P A ++G       L++KI        ++    ++  +      + +    +
Sbjct: 130 YVPGCPPRPEALIFGIM----TLQKKIEREQQVGYEKPRPALVDEEGNIREYLPEREYRQ 185

Query: 195 VDR-EARRLAG-------YRYGRQIADDYLTQLGQGEEQVARWLEAENDPRL 238
           +   +A R  G       Y + R+        L  G      W+  E   RL
Sbjct: 186 ISEGKAHRPKGIKRLPRTYVFQRK-------GLPPGSMTDVGWIPPEARERL 230


>UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
           ATCC 25986 RepID=A4EBM2_9ACTN
          Length = 195

 Score =  189 bits (479), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 60/143 (41%), Positives = 81/143 (56%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
           K+ RS +V   D   CNGC+IE+ A+L+PLFDAERFG+    +P+HADI L TG+V    
Sbjct: 4   KMSRSPWVIHYDGSSCNGCDIEVLASLTPLFDAERFGVVNTGNPKHADIFLVTGSVNAQN 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAAT 152
                + +    +PK  ++ G C  SGG+F D Y V GG D+ +PVDVY PGC   P   
Sbjct: 64  LPVVRQIYNQMLEPKCVVACGICACSGGVFRDAYNVIGGVDRAIPVDVYAPGCAIRPETV 123

Query: 153 LYGFAMALGLLEQKIHARGPGEL 175
           +     A G+L+QK      G  
Sbjct: 124 IDAIVEACGILDQKEAVMRAGGD 146


>UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyces limnophilus DSM
           3776 RepID=C1ZCK3_PLALI
          Length = 225

 Score =  189 bits (479), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 84/182 (46%), Gaps = 8/182 (4%)

Query: 7   PRDANGIP-VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA 65
           P  + G P +    +E++            + + V+ +  G    C +E+ AT    +D 
Sbjct: 19  PLPSAGSPWIEGRFEENLIVTTLEQAMNWGQLSSVWPLTFG-IACCAMEMMATGMSKYDL 77

Query: 66  ERFGI-KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-FH 123
           +RFG      +PR AD+++  G VT  M S   R +   PDPK  I+ GAC   GG  F 
Sbjct: 78  DRFGSGAFRATPRQADLMIVAGTVTYKMASRIRRLYDQMPDPKYVIAMGACTIGGGPYFK 137

Query: 124 DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEIL 183
             Y V  G D +VPVDVYIPGCPP P A L G       ++ KI AR  G        + 
Sbjct: 138 YGYHVVKGVDLVVPVDVYIPGCPPRPEALLEGVM----RIQDKIRARKLGRNTVSQLPVP 193

Query: 184 HG 185
           H 
Sbjct: 194 HR 195


>UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=Myxococcales
           RepID=NUOB2_SORC5
          Length = 182

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 11/164 (6%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
           D  G+ +  +VD+++     + L    RS  V+ +  G    C IE+  T  P  D ERF
Sbjct: 21  DGGGV-ITTSVDQTV-----NWLLNWGRSNSVWYMLFG-LACCAIELMQTGGPRGDLERF 73

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           G    PSPR +D+ +  G +T  M +   R +    +P+  IS G+C N GG+F   Y V
Sbjct: 74  GAAPRPSPRSSDLFIIAGTLTYKMATRVKRLYDQMSEPRFVISMGSCSNCGGLFQYAYSV 133

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
             G D+I+PVDVY+PGCPP P A L G       +++KI +   
Sbjct: 134 CKGVDQIIPVDVYVPGCPPRPEALLEGLL----KIQEKIKSERA 173


>UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=pseudomallei group
           RepID=A5TDF9_BURMA
          Length = 293

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
           P+ +  D  I +   + +   ++++  Y     G   C +E+       +D +RFG+   
Sbjct: 131 PLTLEKDGFIVTTLDAAMAAAQKNSLWYMTF--GLACCAVEMMHAAGARYDMDRFGMIPR 188

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR  D+++  G +T  M     R +    +P+  +S G+C N GG +H  Y V  G D
Sbjct: 189 ASPRQCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCD 248

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           +IVPVDVY+PGCPPT  A +YG       + ++     P
Sbjct: 249 RIVPVDVYVPGCPPTAEALVYGLMQLQRKVAERSTHSRP 287


>UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Proteobacteria RepID=Q12F15_POLSJ
          Length = 181

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 91/170 (53%), Gaps = 10/170 (5%)

Query: 14  PVPMTVDES---IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI 70
           P P   D     I  +   +L  + ++  +  VD G CNGCE+EI A  +P ++ E  GI
Sbjct: 17  PAPGIDDAQRTAIERIHRDILLILGQALTIRAVDAGSCNGCELEIHALNNPYYNIEGLGI 76

Query: 71  KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
           K V SPRHAD+LL TG V+R M     R + + P+PK+ ++ G CG +GGIF D Y   G
Sbjct: 77  KFVASPRHADMLLVTGPVSRHMDEALRRTYDATPEPKLVVAVGDCGCTGGIFGDSYASCG 136

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
               ++PVDV +PGCPP P   L G   A       +  R PG   + PA
Sbjct: 137 RVANVIPVDVTVPGCPPPPIEILRGILTA-------VRQRRPGTAGDNPA 179


>UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=Actinomycetales
           RepID=NUOB1_SALAI
          Length = 188

 Score =  187 bits (476), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 84/173 (48%), Gaps = 11/173 (6%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
           VP  + E I  +   L    + S +V+     G   C IE  AT     D  R G+    
Sbjct: 3   VPAVLGEPIRFV---LNWGRRYSLWVFNF---GLACCAIEFIATSMSRHDFMRLGVIPFA 56

Query: 75  -SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
             PR AD+++ +G VT  M     R +   P+PK  IS+GAC N GG + D Y V  G D
Sbjct: 57  HGPRQADLMVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVD 116

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
           +++PVDVY+PGCPP P A L+G       L++KI A G G       + L   
Sbjct: 117 QLIPVDVYVPGCPPRPEALLHGIL----RLQEKIAAEGAGVGGVSRPDALASP 165


>UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GAA3_9ACTN
          Length = 228

 Score =  187 bits (474), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            +S ++   D   CNGC+IE+  ++ PL+D ERFGI    +P+HADI L TG+V      
Sbjct: 5   SKSPWLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINTGNPKHADIFLVTGSVNAQNIE 64

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
                +    +PK+ ++ G C  +GG+F D Y V GG DK +PVDVY PGC   P   + 
Sbjct: 65  VVRHIYDQMLEPKVVVACGICACTGGVFRDCYNVIGGVDKAIPVDVYAPGCAVRPETIID 124

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQP 190
               A+ +L++K      G+    PA      ++  
Sbjct: 125 AVLKAVEILDEKAKLMAAGKD---PATAPRKGLLPR 157


>UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax=Bacteria
           RepID=NUOB1_ROSS1
          Length = 268

 Score =  187 bits (474), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRA 91
              R + ++ +  G    C IE+ AT    FD  RFG +    SPR AD+++  G VT+ 
Sbjct: 26  NWGRRSSIWPLSFG-LACCAIEMMATGLARFDLARFGAEMFRASPRQADLMIVAGTVTKK 84

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M    +R +   P+P+  IS GAC  SGG F D Y V  G D ++PVDVYIPGCPP P A
Sbjct: 85  MAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEA 144

Query: 152 TLYGFAMALGLLEQKI--HARGPGELDEQPAEIL 183
            L+        ++ +     R  G+ + +   + 
Sbjct: 145 LLHALMTLQKQIDAQRLNQVRWYGKREAKEYPVP 178


>UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Ajellomyces
           dermatitidis RepID=C5GDP9_AJEDR
          Length = 245

 Score =  186 bits (472), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 29  SLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAV 88
             +    R A ++ +   G   C +E+ A   P +D +R G     SPR +D+L+  G V
Sbjct: 99  DAVANWGRQASLWPI-SLGLACCGLEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTV 157

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPT 148
           T  M       +   PDPK  IS G+C N GG +H  Y V  G D+++PVDVY+PGCPPT
Sbjct: 158 TNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRLLPVDVYLPGCPPT 217

Query: 149 PAATLYGFAMALGLL 163
             A +Y  ++    L
Sbjct: 218 AEALMYAISVVRRKL 232


>UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea RepID=A0B811_METTP
          Length = 190

 Score =  186 bits (472), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 28/189 (14%)

Query: 10  ANGIPVPMTVDESIASMK--------------------------ASLLKKIKRSAYVYRV 43
           ++ IPVP+ +DE I                               ++L   ++++  + +
Sbjct: 4   SDVIPVPVAIDEEIEKWTIWGRPVMDVWFTTTEKIHQIIQMGPIKNVLNWGRKNSLWFLM 63

Query: 44  DCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSA 103
              GC  C +E+     P +D +RFGI    +PR AD+++ +G +TR         W+  
Sbjct: 64  QPMGC--CGVEMLVFGCPHYDCDRFGIIPRATPRQADVMIISGYITRKYLPAIKNLWEQM 121

Query: 104 PDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            +PK CI+ G C  SGG F+D Y +   T    P+DVY+PGCPP P   + GF      +
Sbjct: 122 LEPKWCIAVGECAISGGPFYDSYNIIQNTSDFFPIDVYVPGCPPRPEQFIKGFVELQEKI 181

Query: 164 EQKIHARGP 172
           +Q+   RG 
Sbjct: 182 KQRKDKRGY 190


>UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteroidales
           RepID=NUOB_AZOPC
          Length = 191

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRH 78
             +IA  K + L    RS  V+ +     + C IE     +  +D  RFG +V   SPR 
Sbjct: 23  GANIAIAKLNDLINWGRSNSVWPLTF-ATSCCGIEFMCLGAARYDFARFGWEVTRNSPRQ 81

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           AD++   G +   M     R +    +PK  I+ G+C  SGG F   Y    G DKI+PV
Sbjct: 82  ADVVFCCGTIVHKMAPVLKRLYDQMSEPKYVIALGSCAISGGPFKSSYHTIMGIDKIIPV 141

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLE 164
           DVYIPGCPP P A +YG       ++
Sbjct: 142 DVYIPGCPPRPDAMIYGMIQLARKIK 167


>UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=C5CEV5_KOSOT
          Length = 137

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 77/132 (58%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           K +KRS +V+ V    CN C+IEI   L+P +D ERFGIK+V S RHAD+LL TG     
Sbjct: 6   KILKRSLWVFHVSASPCNNCDIEILDMLTPRYDLERFGIKLVGSVRHADVLLVTGMGGCK 65

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           +    +R +  AP P   I+ G C  +G  F + Y   G  D+ VPVD+YIPGCPP P  
Sbjct: 66  VSERVIRIYNQAPKPVFVIAVGTCPVAGATFKESYTRCGPLDRFVPVDLYIPGCPPKPET 125

Query: 152 TLYGFAMALGLL 163
            + G +  LG L
Sbjct: 126 MIAGLSELLGRL 137


>UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Tax=cellular
           organisms RepID=NDHK_THEEB
          Length = 237

 Score =  184 bits (467), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 7/171 (4%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASM----KASLLKKIKRSAYVYRVDCGGCNGCEIEIF 56
           M+N   P   N I  P    E   ++       +    + S+    +   G   C IE  
Sbjct: 1   MTNTTSPAILNPIARPEVPQELAENIILTSLNDVYDWARLSSLWPLMY--GTACCFIEFA 58

Query: 57  ATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACG 116
           A +   FD +RFG+    SPR AD+++ +G +T  M    +R ++  P PK  I+ GAC 
Sbjct: 59  AMIGSRFDFDRFGLVPRNSPRQADLIITSGTITMKMAPALVRLYEQMPSPKYVIAMGACT 118

Query: 117 NSGGIF-HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
            +GG+F  D Y    G DK++PVDVY+PGCPP P A +         +  +
Sbjct: 119 ITGGMFSSDSYSAVRGVDKLIPVDVYLPGCPPRPEAIMDAIVKLRKKIANE 169


>UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=Dehalococcoides
           RepID=NUOB_DEHSC
          Length = 200

 Score =  184 bits (466), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADI 81
           I S++  L      S +       G   C IE+    +  +D  RFG+     SPR AD+
Sbjct: 54  ITSVEKVLNWSRHYSLWPVMF---GLACCAIEMMCMAASRWDLARFGMDIFRASPRQADL 110

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G +T  M     R +   P+PK  ++ GACG SGG+F D Y V  G + +VPVDVY
Sbjct: 111 MIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMGACGTSGGLFRDSYSVVPGFNLVVPVDVY 170

Query: 142 IPGCPPTPAATLYGFAMALGLLEQ 165
           +PGCPP P A +         +++
Sbjct: 171 VPGCPPRPEALMRAIMDIHEKIDK 194


>UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Thermofilum
           pendens Hrk 5 RepID=A1RWL1_THEPD
          Length = 245

 Score =  183 bits (464), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 88/220 (40%), Positives = 122/220 (55%), Gaps = 6/220 (2%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
           K      +KRS Y+ RVD G CNGC+IE+F  L+P FD ER G+K+V SPR AD++L TG
Sbjct: 6   KQKAYDALKRSVYLLRVDSGSCNGCDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTG 65

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
            VTR         +++AP P + ++ GAC   GGI++D Y   GG DK++PVDVYIPGCP
Sbjct: 66  PVTRQFLPVLKATYEAAPKPCVVVACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCP 125

Query: 147 PTPAATLYGFAMALGLLEQKIHARGPGELDE--QPA-EILHGDMVQ-PLRVKVDREARRL 202
           P P A L+G A+AL +LEQK+         E  +PA   L G +    L   +  E  + 
Sbjct: 126 PRPHAILHGVAVALDILEQKVKRSETKADAESFKPALPSLEGAINSWELYRALKLELYKH 185

Query: 203 AGYRYGRQIADDYLTQLG--QGEEQVARWLEAENDPRLNE 240
            GYR G ++  D L      +  +  A   E     + ++
Sbjct: 186 LGYRIGYRVLCDLLRISKGSKDLDDFAAKAEKAVSEKYHD 225


>UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Geobacter
           metallireducens GS-15 RepID=Q39SF9_GEOMG
          Length = 244

 Score =  182 bits (463), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 61/150 (40%), Positives = 78/150 (52%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            P +       +   L +   RS     V  GGCN CE +     +  +D  RFGI+ V 
Sbjct: 94  HPGSEHHHARPLPPDLRRLFGRSLKFREVSAGGCNACEADTNVLSTIGWDLGRFGIQFVA 153

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SPRHAD L  TG VT  M    L  +++ PDPKI ++ GAC  +GG + D   V  G D 
Sbjct: 154 SPRHADGLWVTGPVTEHMAKALLTTYEAIPDPKIVVACGACAINGGPYIDTPQVCNGVDS 213

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           IVPVD+YIPGCPP PA  L G    L  ++
Sbjct: 214 IVPVDLYIPGCPPHPATILDGLLRILNKIK 243


>UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax=Bacteria
           RepID=NUOB2_STRGG
          Length = 235

 Score =  182 bits (462), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 79/173 (45%), Gaps = 8/173 (4%)

Query: 7   PRDANGIPVPMTVDESI----ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           P D   +P P  +          MK  L    + S +V+     G   C IE  A     
Sbjct: 19  PADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFNF---GLACCAIEFIAASMAR 75

Query: 63  FDAERFGIKVVP-SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            D  R G+      PR AD+++ +G VT  M     R ++  P+PK  IS+GAC N GG 
Sbjct: 76  HDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNCGGP 135

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           + D Y V  G D+I+PVDVY+PGCPP P A L G       + ++  A     
Sbjct: 136 YWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARESLAERYAT 188


>UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometricum borinquense
           DSM 11551 RepID=C1VB41_9EURY
          Length = 236

 Score =  182 bits (461), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 7/180 (3%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADI 81
           I +   + +  ++ S  ++ +  G    C IE+  T S   D +RF       SPR AD+
Sbjct: 48  ILTKFDNFMNWVRGS-SMFMLQFG-IACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADV 105

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G +         R +   P+PK  +  G+C  SGG F + Y V  G ++++PVD++
Sbjct: 106 IIVPGTIVSKFAPRMKRVYDQMPEPKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIH 165

Query: 142 IPGCPPTPAATLYGFAMALGLL---EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDRE 198
           +PGCPP P A +YG A     +   E       P EL EQ  ++   +++  L  ++D E
Sbjct: 166 VPGCPPRPEALIYGVAKLQQRIAEGESSPVTVKPYEL-EQFGDLEQDELIDHLADQIDEE 224


>UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydrogenasei, chain b)
           (Ndh-1, chain b) n=1 Tax=Persephonella marina EX-H1
           RepID=C0QR84_PERMH
          Length = 181

 Score =  182 bits (461), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 4/173 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           + +++  L    + S +   V   G   C IE+  T +  FD +R GI    SPR +D+L
Sbjct: 11  LTTVEEVLSWGRRNSLWPASV---GLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSDVL 67

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           +  G V   +       +   PDPK  I+ G C ++GG F   Y    G D+I+PVDVY+
Sbjct: 68  IVAGTVVNKVAPMLKLIYDQMPDPKWVIAMGGCSSAGGPFP-TYATLQGVDRIIPVDVYV 126

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
           PGCPPTP A L+G       ++ K   +   E+  +        +    +  +
Sbjct: 127 PGCPPTPQALLWGILELQKKIKAKKEGKVWEEIPVREVPTASQPIPIKEKSPL 179


>UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 Tax=Halobacteriaceae
           RepID=B0R3U2_HALS3
          Length = 235

 Score =  181 bits (459), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 7/181 (3%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADI 81
           I +     +  ++ S  ++ +  G    C IE+  T S   D +RF       SPR AD+
Sbjct: 47  ILTKFDKFMNWVRGS-SMFMLQFG-IACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADV 104

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G +         R +   P+PK  ++ G C  SGG F + Y V  G ++++PVD++
Sbjct: 105 MIVPGTIVSKFAPRMKRVYDQMPEPKFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIH 164

Query: 142 IPGCPPTPAATLYGFAMALGLL---EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDRE 198
           IPGCPP P A +YG A     +   E       P EL+E   ++   ++V  L   +D E
Sbjct: 165 IPGCPPRPEALVYGVAKLQERIANGESSPVTVKPYELEEF-GDLERDEIVDKLAADIDEE 223

Query: 199 A 199
           +
Sbjct: 224 S 224


>UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=cellular organisms
           RepID=NUOB_DEIGD
          Length = 178

 Score =  181 bits (458), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 7/151 (4%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRAM 92
             RS  ++    G    C IE+ ++     D  RFG +    SPR AD+++  G +++ M
Sbjct: 30  WGRSNSLWPATFG-LACCAIEMMSSTDGRNDLSRFGSEVFRASPRQADVMIVAGRLSKKM 88

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAAT 152
                R +   PDPK  IS GAC +SGG+F + Y V    D +VPVDV++PGCPP P A 
Sbjct: 89  APIMRRVYDQMPDPKWVISMGACASSGGMF-NNYAVVQNVDHVVPVDVFVPGCPPRPEAL 147

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEIL 183
           +Y        L++K+         EQ   + 
Sbjct: 148 IYAVMQ----LQKKVRGEAYDARGEQLPMVE 174


>UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW47_ACICJ
          Length = 264

 Score =  180 bits (457), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/140 (43%), Positives = 82/140 (58%), Gaps = 1/140 (0%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           +  +RS +V  VD G CNGCE E+ A  +P ++  R GI   PSPR AD+LL TG VTRA
Sbjct: 122 RGFRRSLHVRHVDAGSCNGCESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRA 181

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M  P  R W++ P P+  ++ G C  SGGI     C   G ++ +PVD+Y+PGCPP PAA
Sbjct: 182 MLEPLRRTWEAMPAPRWVMASGTCAVSGGIAPGGPC-LSGLEEALPVDLYLPGCPPNPAA 240

Query: 152 TLYGFAMALGLLEQKIHARG 171
            +    M LG   Q++    
Sbjct: 241 IIEALLMFLGRRAQRVRGGR 260


>UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd subunit n=1
           Tax=uncultured marine microorganism HF4000_APKG10H11
           RepID=B3TC56_9ZZZZ
          Length = 182

 Score =  179 bits (453), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 83/176 (47%), Gaps = 9/176 (5%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKI-----KRSAYVYRVDCGGCNGCEIEI 55
           M N+L P     I   +    ++A  K  L+KK+     K S +V  +  G    C  E 
Sbjct: 5   MKNIL-PDGTKTIVQDIVDGVNVAIKKVPLVKKLITWGRKNSLWVVHLTTG---CCSPEF 60

Query: 56  FATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGAC 115
            A     +D ERFG  V+ + R  DIL+  G V   M     R +   PDPK  I+ G C
Sbjct: 61  AALAGAGYDMERFGPLVMAAMRQCDILIIEGQVADKMAEVVKRTYDQMPDPKYVIAVGNC 120

Query: 116 GNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
             SGG + D Y +  G DKI+PVDVY+PGCPP P   +    +    ++++   R 
Sbjct: 121 AISGGFYWDSYSMVMGIDKIIPVDVYVPGCPPRPEDWIDAIRLVQTRMDKEGLDRE 176


>UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=7 Tax=Trypanosomatidae RepID=NDUS7_TRYBB
          Length = 202

 Score =  178 bits (452), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 12  GIPVPMTVDESIASMKASLLKK-IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI 70
           G   P    +        L +  +  S +       G   C +E+    +  +D +RFGI
Sbjct: 41  GTSKPNNALQYAQMTLHDLTEWCLAYSPWPL---TFGLACCAVEMMHAYASRYDLDRFGI 97

Query: 71  KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
              P+PR A+I++ +G VT  M       +    +PK  IS G+C N GG +H  Y V  
Sbjct: 98  VPRPTPRQAEIIIVSGTVTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLR 157

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           G ++ +PVD +IPGCPP+  + ++     L  L++KI 
Sbjct: 158 GCERAIPVDFWIPGCPPSAESLVF----CLHTLQKKIR 191


>UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_ACIBL
          Length = 213

 Score =  178 bits (451), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 8/150 (5%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADI 81
           + +   + +  I++++        G   C IE+ +  +  FD  RFG +   PSPR +D+
Sbjct: 57  VLTTLDNAVNWIRKNSIWPMTF--GLACCAIEMMSMGASRFDIARFGAEVFRPSPRQSDL 114

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G V++ M       +   P+PK  IS GAC  SGG+F + Y +  G ++ +PVD+Y
Sbjct: 115 MIIAGRVSQKMAPVIRHLYLQMPEPKWVISMGACATSGGVF-NNYALVQGVNQYIPVDIY 173

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           +PGCPP P   +Y       LL++KI A  
Sbjct: 174 VPGCPPRPEQLIYAIT----LLQEKIQAER 199


>UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Epsilonproteobacteria
           RepID=A6Q6W5_SULNB
          Length = 168

 Score =  178 bits (451), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 11  NGIPVPMTVDESIASMKASLLKKIKR----SAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
             +     +D+ + ++K  + + +K+    S  +  VD G CN CE E  A  +P +D E
Sbjct: 12  GILTEDTALDKELEAIKREIKENVKKKFAGSLAIRMVDSGSCNACEAECNALSNPYYDLE 71

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           R GI  V SPRHAD++L  G +T  M    L A++  P+PK  I+ GAC      F   +
Sbjct: 72  RLGIYFVASPRHADVMLLNGLMTFNMTPHVLDAYKQIPEPKWVITLGACPVMEAPFEKTF 131

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            V       +PV  +IPGCPP P   + G    L  +
Sbjct: 132 AVKAPAADHLPVAHHIPGCPPEPLEIIRGLLEFLKKI 168


>UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=1 Tax=uncultured
           methanogenic archaeon RC-I RepID=Q0W6T1_UNCMA
          Length = 135

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/134 (47%), Positives = 84/134 (62%), Gaps = 2/134 (1%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +  IKRS +VY    GGC GC+IE+ A++ P +D ER G+++VPSPR+AD+LL TG V  
Sbjct: 1   MNMIKRSPWVYHAHAGGCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPL 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHD--LYCVWGGTDKIVPVDVYIPGCPPT 148
             +    R +   P+PK  I+ GACG S G+F D   Y + G  DKI+PVDV IPGCPP 
Sbjct: 61  HTKPFLERVYAQTPEPKRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPK 120

Query: 149 PAATLYGFAMALGL 162
           P A + G    L +
Sbjct: 121 PEAIMEGIIKVLRM 134


>UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit n=4 Tax=Archaea
           RepID=B6YWP9_THEON
          Length = 191

 Score =  177 bits (449), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 11/159 (6%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
            +K S +V+ ++ G CNGC+IEI    +P  D ER GIK+V SPRHAD + FTG +TR  
Sbjct: 1   MVKNSLWVFHLNSGSCNGCDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITREC 60

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV-----------PVDVY 141
               + A ++ P+PK+ ++ GAC   GGI++D Y V GG  ++            P  V+
Sbjct: 61  LPKVIDALKAVPEPKVVLAIGACACGGGIWYDTYSVIGGVKELYRILKEEYNMEPPATVF 120

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           IPGCPP P A +YG A+A G+LE K       E +E  A
Sbjct: 121 IPGCPPKPEAIIYGVAVASGMLESKQKKTVYVEPEESVA 159


>UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 Tax=cellular
           organisms RepID=NDHK2_CYAP4
          Length = 259

 Score =  177 bits (449), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 6/185 (3%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
             +   VP  + E+I       +    R + +Y +  G    C IE  A ++  FD ERF
Sbjct: 12  PISSAEVPPELSENIILTSLDDIYNWARISSIYPLMYG-TACCFIEFAAMIASRFDMERF 70

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-HDLYC 127
           G+    SPR AD+++  G +T  M  P  R +   P+PK  I+ GAC  +GG+F  D   
Sbjct: 71  GMFPRASPRQADLIILAGTLTMQMAVPTRRLYDQMPEPKYVIAMGACMITGGMFSADSPT 130

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM 187
              G DK++P+DVYIPGCPP P A L     A+  L +KI    P E            +
Sbjct: 131 ALRGADKLLPIDVYIPGCPPRPEAILD----AVTKLRKKIANESPQERQNLQQTHRFYSI 186

Query: 188 VQPLR 192
              +R
Sbjct: 187 AHQMR 191


>UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=Nitrosopumilus
           maritimus SCM1 RepID=A9A345_NITMS
          Length = 174

 Score =  177 bits (448), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRSP 95
           S +   ++      C +E  A  SP +D ERFGI +   S R  D+++  G +TR M   
Sbjct: 41  SLWPVHIET---ACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPR 97

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
               +   P+PK  I+ GAC  +GG++ D Y V  G D ++PVDVY+PGCPP P   + G
Sbjct: 98  LRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQG 157

Query: 156 FAMALGLLEQKIHARGPGEL 175
                 LL++KI      + 
Sbjct: 158 ----CILLQEKIKRMKARKF 173


>UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria RepID=A3THJ2_9MICO
          Length = 198

 Score =  177 bits (448), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRS 94
           R A ++    G    C IE+ A  +P +D  RFG+ +   +PR AD+++  G V+  M  
Sbjct: 24  RKASIWPATFG-LACCAIEMMAVGTPDYDIARFGMERFSATPRQADLMIVAGRVSNKMAP 82

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
              + +   P+PK  IS G C +SGG+F + Y +  G D I+PVD+Y+PGCPP P   L 
Sbjct: 83  VVRQVYDQMPNPKWVISMGVCASSGGMF-NNYAIVQGVDHIIPVDIYLPGCPPRPEMLLN 141

Query: 155 GFAMALGLLEQKIHA 169
                   ++     
Sbjct: 142 AIIELHDQIQNSKLG 156


>UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteria
           RepID=Q2T5T7_BURTA
          Length = 174

 Score =  176 bits (446), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/139 (41%), Positives = 81/139 (58%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           ++  +L  + R+  +  +D G CNGCE+E+ A  +P ++ E  GIK V SPRHAD+LL T
Sbjct: 32  IRQEILDILGRALCIRAIDAGSCNGCELELNALGNPYYNIEGLGIKFVASPRHADMLLIT 91

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G +T  MR     A+ + P PK+ ++ G C  +GG+F   Y V G  + +VPVDV I GC
Sbjct: 92  GPLTLNMRDAVRLAYDATPAPKLVVAAGDCACTGGVFAGSYAVCGPVETLVPVDVAIAGC 151

Query: 146 PPTPAATLYGFAMALGLLE 164
           PP P   L G   AL  + 
Sbjct: 152 PPRPIDLLRGIRGALERVR 170


>UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax=Bacteria
           RepID=NUOB2_OPITP
          Length = 191

 Score =  176 bits (446), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VV 73
           +P  V +     K   L  + R+  ++ +  G    C IE+ A     FD  RFG +   
Sbjct: 28  IPPEVSQIARFAKLDDLLALGRANSLWPLTFG-LACCAIEMMAAGMARFDISRFGAEVFR 86

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH--DLYCVWGG 131
           PSPR AD+++  G V + M       +    +PK  I+ G C  SGG F     Y V  G
Sbjct: 87  PSPRQADVMIVAGTVNKKMAPAVKLLYDQMLEPKWVIAMGQCAISGGPFKYPGQYAVVEG 146

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
            D++ PVDVY+PGCPP P A + G       LE+KI  + 
Sbjct: 147 VDQLFPVDVYVPGCPPRPEALIEGIL----KLEEKITGKR 182


>UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarchaeota
           RepID=Y516_METJA
          Length = 148

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/141 (43%), Positives = 86/141 (60%), Gaps = 5/141 (3%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           KRS +V  V+ GGCNGC+IEI A L+P +D E++GI V  +PR AD+LL TG VT     
Sbjct: 8   KRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAE 67

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
                ++  P+PKI ++ GAC  SGGIF +   V GG DK++PVD  IPGCPP P+  + 
Sbjct: 68  RLKEIYEKTPEPKIVVAVGACALSGGIFKEG-HVVGGVDKVIPVDAKIPGCPPRPSEIIE 126

Query: 155 GFA----MALGLLEQKIHARG 171
                   A+ + E+++  + 
Sbjct: 127 TILKVAPKAIAMREKRLKNKD 147


>UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cystobacterineae
           RepID=NUOB_MYXXD
          Length = 187

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHA 79
           +SI S      +K     Y Y         C +E  +  +   D  RFG +    SPR A
Sbjct: 22  QSIVSKGLGWARKYSLFTYPY-----ATACCGMEYMSVAASRHDISRFGAEFPRFSPRQA 76

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+L+  G +         R ++   +PK  +++G C +SGG F+D Y V  G D+I+PVD
Sbjct: 77  DLLMVVGTINLKQAPILKRVYEQMAEPKWVVAFGVCASSGG-FYDNYAVLQGIDRIIPVD 135

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           VYIPGCPP P   L G  +    +  ++H R     +  P 
Sbjct: 136 VYIPGCPPRPEQVLDGLMLLQDKIGNQVH-RIAEREEANPT 175


>UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfitobacterium
           hafniense RepID=Q24ST9_DESHY
          Length = 155

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 81/133 (60%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
             + L+ +++S ++  +DCG CNGC+ E+ A L+P++D +RFG+  V SPRHADIL+ TG
Sbjct: 22  GEAHLRSLRQSWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTG 81

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
            ++  +   AL  ++  P+PK  I+ G C   GG+F + Y    G  + +PVD+ IPGCP
Sbjct: 82  PMSTHLIQAALATYEGTPNPKRIIAVGDCALDGGMFKEAYAAHNGVGEALPVDIKIPGCP 141

Query: 147 PTPAATLYGFAMA 159
           P+P   L      
Sbjct: 142 PSPDELLKVLLQL 154


>UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=Thermoprotei
           RepID=A2BJ94_HYPBU
          Length = 209

 Score =  174 bits (442), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 13/189 (6%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           +K+ L   I  S +   +     + C  E  A   P +D+ER G      PR+ ++LL  
Sbjct: 33  IKSLLDWGISFSLWPVHLTT---SCCGAEFAAVYDPKYDSERLGSLPFTHPRNTNVLLVE 89

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G +TR M   A   W+  P PK  I+ GAC  +GGIF++ Y +    ++I+PVD Y+PGC
Sbjct: 90  GTLTRKMARAARLVWEQMPWPKFVIAMGACAITGGIFYNSYNIVR-VNQILPVDYYVPGC 148

Query: 146 PPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGY 205
           PPTP A     A AL  L++K+     GE   +P +I     ++ L      +ARR    
Sbjct: 149 PPTPEAV----ANALIKLQEKVRK---GEW--KPRDIEDKKFLEELMAPHYEKARRHLEL 199

Query: 206 RYGRQIADD 214
               Q  + 
Sbjct: 200 LARTQRTER 208


>UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_FRAAA
          Length = 281

 Score =  174 bits (441), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 28  ASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTG 86
             L    +RS+        G   C IE+ +T +  +D  RFG++    SPR AD+++  G
Sbjct: 17  EKLANWSRRSSLWPATF--GLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADLMIVAG 74

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
            V++ M     + +   P+PK  +S G C +SGG+F + Y +  G D IVPVD+Y+PGCP
Sbjct: 75  RVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMF-NNYAIVQGVDHIVPVDMYLPGCP 133

Query: 147 PTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           P P   +         L +KI A GP        E       +P+ V   R
Sbjct: 134 PRPEMLMDAII----KLHEKILA-GPVTGRTAHTESGSSPYPKPIDVATAR 179


>UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGC1_9EURY
          Length = 172

 Score =  174 bits (440), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 3/144 (2%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRA 91
              RS  ++ +  G  + C IE+    +   DA+R G+     SPR +D++L +G +T+ 
Sbjct: 29  NWGRSNSLWPLTFG-TSCCAIEMMTFGATKVDADRLGVLFNGDSPRQSDLILVSGTITKK 87

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M    L  ++  PDPK  I+ GAC  SGG++HD Y    G D+I+PVD +IPGCPP P  
Sbjct: 88  MARRLLNVYEQIPDPKYVIAVGACNVSGGLYHDSYNTIEGIDRIMPVDAFIPGCPPRPEE 147

Query: 152 TLYGFAMALGLLEQ-KIHARGPGE 174
            L    +   L+++ +  A+  G 
Sbjct: 148 FLDAVRVLQKLIKENRSKAQENGR 171


>UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Tax=Thaumarchaeota
           RepID=A0RY66_CENSY
          Length = 160

 Score =  173 bits (439), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 8/140 (5%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRSP 95
           S +   ++      C +E  A   P +D ERFGI +   S R  D+++  G +TR M   
Sbjct: 27  SLWPVHIET---ACCSVEFGAASGPKYDVERFGIIEAFGSLRQCDLIVVQGTITRKMAPR 83

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
               +   P+PK  I+ GAC  +GG++ D Y V  G D ++PVDVY+PGCPP P   + G
Sbjct: 84  LRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPVDVYVPGCPPRPETLIQG 143

Query: 156 FAMALGLLEQKIHARGPGEL 175
                 LL++KI      + 
Sbjct: 144 ----CMLLQEKIKRMRARKE 159


>UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=Sphingobacteriales
           RepID=C7PSH0_CHIPD
          Length = 187

 Score =  173 bits (439), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 6/145 (4%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMR 93
           K S +         + C IE  AT++  +D  RFG + +  +PR  D+L+  G +++ M 
Sbjct: 39  KNSIWPLPFAT---SCCGIEFMATMASTYDMSRFGSERMAFTPRQCDLLMVMGTISKKMA 95

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               + +    +P+  ++ GAC +SGG+F D Y V  G D+++PVDVY+PGCPP P A +
Sbjct: 96  PVLRQVYLQMAEPRWVVAVGACASSGGVF-DTYSVLQGIDQVIPVDVYVPGCPPRPEAII 154

Query: 154 YGFAMALGLL-EQKIHARGPGELDE 177
            GF     L+ ++ +  R   +  E
Sbjct: 155 DGFMRVQDLVGQESLRRRHSDKYKE 179


>UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A8Z3_GEMAT
          Length = 212

 Score =  173 bits (438), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 3/174 (1%)

Query: 25  SMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADILL 83
           + +   L    R+  ++ +  G    C IE  AT +  FD  RFG+ ++  SPR AD+LL
Sbjct: 28  TTRLDFLVNWGRAGSLWPMPFG-TACCAIEFMATAASRFDLSRFGMERLSYSPRQADVLL 86

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
             G V   +     R +Q  P PK  IS GAC ++GG+F D Y V  G D I+PVDVY+P
Sbjct: 87  CAGRVPLKLAPVLRRIYQQMPQPKWVISMGACASTGGMF-DNYAVVQGIDTIIPVDVYVP 145

Query: 144 GCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           GCPP P A ++   M    + Q+        ++  P       +      ++  
Sbjct: 146 GCPPRPEALMHAIIMLQKKVMQERLKDSTRHVEIDPDPTSQLYIPPSRIDELSE 199


>UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Epsilonproteobacteria RepID=B9L626_NAUPA
          Length = 157

 Score =  172 bits (437), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 7/138 (5%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            +S ++     G    C +E+ A + P +D ER+G  + P+PR ADI+  TG V++ +  
Sbjct: 13  SKSPWIVHFCSG---CCSLEMLAAMGPRYDWERYGYIMTPTPRQADIMFITGLVSKKILP 69

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
             LR ++  P+P+  ++ GAC   GG ++D   V     +I+P DV++ GCPP P A + 
Sbjct: 70  ALLRTYEQMPEPRYVVAIGACAYDGGPYNDSVSVIKNMTEILPADVFVAGCPPRPEAIIA 129

Query: 155 GFAMALGLLEQKIHARGP 172
           G       L++KI    P
Sbjct: 130 GL----EELKEKIKRGEP 143


>UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=Bacteria
           RepID=NUOB1_OPITP
          Length = 171

 Score =  171 bits (433), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 10/154 (6%)

Query: 23  IASMKASLLKKIK-RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHAD 80
           + S   +++  I+  S +   +   G   C IE+    +  FD  RFG +V+  SPR +D
Sbjct: 19  VVSKADAVINWIRTNSMWPMPM---GLACCAIELMQVGNGRFDIARFGAEVMRFSPRQSD 75

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
            ++  G+VT  M     R +     PK  I+ GAC +SGG++   Y    G D+I+PVDV
Sbjct: 76  CMIVAGSVTYKMAPQIRRIYDQMMSPKWVIAMGACASSGGMYR-SYAHMQGVDRILPVDV 134

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           YI GCPP P     G   AL  L+ KI     G+
Sbjct: 135 YISGCPPRPE----GILDALMKLQAKIRTERAGQ 164


>UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=cellular organisms
           RepID=C9RKY2_FIBSS
          Length = 419

 Score =  170 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 16/206 (7%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           L P+  + IP    V  +I       +    R+  ++ +   G + C IE+ ++    +D
Sbjct: 6   LAPKILDPIPGGKYVVNAI-----DYVVNWARANSIWPL-TYGTSCCAIEMMSSSMARYD 59

Query: 65  AERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF- 122
             RFG +    SPR AD+ +  G +TR M       W+  P PK  I+ GAC  SGG F 
Sbjct: 60  IARFGSEVFRSSPRQADLFILAGTITRRMAPAIQMLWEQIPGPKYVIAMGACTISGGPFI 119

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI--------HARGPGE 174
           +D Y V  G   ++PVDV++PGCPP P A  +G       + ++           +    
Sbjct: 120 YDNYSVVRGAQNLIPVDVFVPGCPPRPEALFHGLLTLREKILKETCRNPWHEGEPKDVST 179

Query: 175 LDEQPAEILHGDMVQPLRVKVDREAR 200
           +D           ++ ++ +   EAR
Sbjct: 180 MDRYREAAKTWAALEEMKDEQMAEAR 205


>UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=Firmicutes
           RepID=NUOB_DESRM
          Length = 196

 Score =  170 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 80/153 (52%), Gaps = 6/153 (3%)

Query: 16  PMTVDESIASMKASLLKKI---KRSAYVYRVDCGGCNGCEIE-IFATLSPLFDAERFGIK 71
           P  + E   ++    L+K+    R+  ++ +  G    C IE + A     FD  RFG +
Sbjct: 33  PAVIGEVARTVSVGPLEKLLNLARANSLWPMGFG-LACCAIEGLMAANMARFDLARFGYE 91

Query: 72  V-VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
           V   SPR AD++L  G VT+      +R ++   +PK  I+ G+C  SGG F D Y V  
Sbjct: 92  VMRASPRQADVMLVCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPFVDSYSVVP 151

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
           G DK++PVDVYIPGC P P A ++GF      +
Sbjct: 152 GVDKLIPVDVYIPGCAPRPDAVIHGFMKLKEKI 184


>UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=Bacteria
           RepID=NUOB_BLOPB
          Length = 236

 Score =  170 bits (431), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 3/137 (2%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHADILLFTGAVTRA 91
              R   ++  + G  + C +E+    + + D  RFG +V   SPR AD ++  G     
Sbjct: 52  NWGRGNSLWPYNFG-LSCCYVEMTTAFTAIHDVARFGSEVLRASPRQADFMVIAGTPFLK 110

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M     R +    +PK  IS GAC NSGG++ D+Y V  G DK +PVD+YIPGCPP P A
Sbjct: 111 MVPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDLYIPGCPPRPEA 169

Query: 152 TLYGFAMALGLLEQKIH 168
            + G  +    + ++  
Sbjct: 170 YIQGLLLLKKSINEERR 186


>UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=Planctomycetaceae
           RepID=D2R5G9_9PLAN
          Length = 192

 Score =  170 bits (430), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 8/170 (4%)

Query: 23  IASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHAD 80
           + +    L    ++ S +           C IE+ AT +   D  RFG +    SPR  D
Sbjct: 10  MVTKLDELANWCRKNSLWPMPFAT---ACCGIELMATGASRHDLARFGAEVFRFSPRQCD 66

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +++  G V   M     R WQ   +PK CIS GAC ++GG+F D Y V  G D+ +PVD+
Sbjct: 67  LMIVAGRVVMKMLPVLQRIWQQMHEPKWCISMGACASTGGVF-DTYAVVQGIDRFIPVDM 125

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQK--IHARGPGELDEQPAEILHGDMV 188
           Y+PGCPP P             ++++  I          Q  +    ++ 
Sbjct: 126 YVPGCPPRPEQLTQAIIDLQDKIQREGTITGEEFETAARQERKRALQELP 175


>UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=cellular organisms
           RepID=NUOB_LEPBA
          Length = 186

 Score =  170 bits (430), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHAD 80
            +A++   +      S + Y         C IE  +T    +D  RFG  +   SPR AD
Sbjct: 19  QVATLDNVVQWGQSFSLWPYPFAT---ACCGIEYMSTACADYDIARFGAERPSFSPRQAD 75

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           ++L  G +T  M     + +    +PK  IS GAC +SGG+FH  Y V  G D+I+PVDV
Sbjct: 76  MILVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDV 134

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMV 188
           Y+PGCPP P A L         ++ +       E+  +  EI   +  
Sbjct: 135 YVPGCPPRPEAILDALVKLQKKVQSQGLEARRQEVMRKIEEINERNKP 182


>UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=2 Tax=Bacteria
           RepID=UPI00016C3AA7
          Length = 201

 Score =  169 bits (429), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 68/132 (51%), Gaps = 5/132 (3%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRAMR 93
           K S +           C IE+ AT S  +D  RFG + +  SPR  D+++  G V   M 
Sbjct: 24  KHSLWPMPFAT---ACCGIELMATASSRYDIARFGSEAMRFSPRQCDVMIVAGRVAMKMV 80

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               R W   P+PK CIS GAC +SGG+F D Y V  G D+ +PVDVY+PGCPP P   +
Sbjct: 81  PVMQRIWLQMPEPKWCISMGACASSGGVF-DTYAVVQGIDRFIPVDVYVPGCPPRPEQLI 139

Query: 154 YGFAMALGLLEQ 165
                    +++
Sbjct: 140 RAVLDLQEKIQK 151


>UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI98_9EURY
          Length = 206

 Score =  169 bits (428), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRA 91
           K  RS  ++ +  G    C IE+    +   DAER G      +PR  D+++  G VT++
Sbjct: 52  KWSRSNSMWPMLFG-LACCAIELMDFGAARIDAERKGYLLFRGTPRQCDVMIVAGWVTKS 110

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M     R ++    PK  ++YG C  +GG +++ Y +  G D+++PVDVY  GCPP P  
Sbjct: 111 MVPRVKRLYEQMASPKYVVAYGECATAGGPWYESYNIVKGIDQVLPVDVYAIGCPPKPE- 169

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPL 191
                  AL  L++K+  +  G  +   AE       + +
Sbjct: 170 ---NLFAALMKLQEKVGGKVAGSEERTIAENPRRAENERV 206


>UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular
           organisms RepID=NUBCD_PELCD
          Length = 794

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPS 75
            ++ ++I            R   ++ +  G  + C +E+  +++P FD  RFG +V   +
Sbjct: 3   ESIPKNIILTTLDDAINWGRKNSMWPMFFG-LSCCFVEMMGSMTPRFDLARFGAEVLRGT 61

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G   + M +  LR ++   +PK  I+ G+C NSGG++ D+Y V  G +++
Sbjct: 62  PREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCANSGGMY-DVYSVMQGVNQV 120

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           +PVDVYIPGCPP P A + G       + +K     P
Sbjct: 121 LPVDVYIPGCPPRPEAFMQGLMTLQEKIARKESPARP 157


>UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_SORC5
          Length = 194

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 11/172 (6%)

Query: 29  SLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGA 87
           +  KK     Y +         C +E  A  SP FD  RFG +    SPR AD+L   G 
Sbjct: 31  NWAKKYSLFQYPFVT-----ACCGMEYMAMASPRFDMARFGAEVPRFSPRQADLLWVVGT 85

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 147
           +++       R ++   DPK  +++G C + GG F+D Y    G DK++P DVY+PGCPP
Sbjct: 86  ISQRQAPALKRIYEQMADPKWVLAFGTCASCGG-FYDNYTTVAGIDKVIPCDVYVPGCPP 144

Query: 148 TPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA 199
            P A L G      LL+ KI          +P E         + ++    +
Sbjct: 145 RPEAVLDGLM----LLQDKIARGDRTPAIVKPREDPAQTTEHLVTLQRKERS 192


>UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Proteobacteria
           RepID=NUOB_SHEWM
          Length = 213

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 8/187 (4%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPS 75
             V++++   +   L    RS  ++  + G  + C +E+  + +   D  RFG +V   +
Sbjct: 20  EVVEKNLLVTRLEDLVAWGRSNSLWPFNFG-LSCCYVEMATSFTSRHDIARFGSEVIRAT 78

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++ +G V   M       +    +PK  I  G+C NSGG++ D+Y V  G D+ 
Sbjct: 79  PREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVICMGSCANSGGMY-DVYSVVQGADRF 137

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
           +P+D+Y+PGCPP P A +YG      LL++ I    P +       I   + +Q    + 
Sbjct: 138 LPIDLYVPGCPPRPEALMYGLT----LLQEAIKDGAPRQARPLNRTI-TPEEIQAFACRN 192

Query: 196 DREARRL 202
            R+ +  
Sbjct: 193 MRDEKHE 199


>UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=Thermoproteaceae
           RepID=A8MBS9_CALMQ
          Length = 374

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 97/237 (40%), Gaps = 18/237 (7%)

Query: 5   LGPRDANGIPVPM-TVDESIASMKASLLKK-IKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           +G    N + + + ++   I  +  SL     K S +   +       C +E     +P 
Sbjct: 1   MGDTTVNTLKITLKSIGMDIKLLPDSLASWGTKFSIWPAHLVT---ACCGVEFAHASAPG 57

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +DAER+G   +  PR  + ++  G VTR M      A++  P PK  I+ G+C   GG+F
Sbjct: 58  YDAERWGFLPIFGPRQTNSIVIEGTVTRKMARIVKTAYEQMPYPKFVIAMGSCAMEGGVF 117

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK-----IHARGPGELDE 177
            + Y V    ++IVPVD ++ GCPPTP A +    M    +E K     I          
Sbjct: 118 WNSYHVVR-VNEIVPVDAWVMGCPPTPEAVIRAIRMVQSKIEGKEVKPNIRPNPVDLSKV 176

Query: 178 QPAEILHGDMVQPLRVKVDR-------EARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
              +        P R++ +        +      +  G+++ D +   L  G +  A
Sbjct: 177 LKPDKPQRPPNPPHRIEFELIKDINVCKPAANVKWELGQKLIDGFKESLKDGVKNTA 233


>UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=Thermoprotei
           RepID=A1RZ48_THEPD
          Length = 171

 Score =  167 bits (422), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 1   MSNLLGPRDANGI--PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAT 58
           MS  LG      +           +       L+    +  ++ V     + C  E  AT
Sbjct: 1   MSCPLGFVMVGRLEESARKAAQWLVEKTPIRSLRDWAITFSLWPVHF-TTSCCGAEFAAT 59

Query: 59  LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
            +P FDAERFG     SPR  ++++  G +T+ M   A   +   P PK  I+ GAC   
Sbjct: 60  SAPRFDAERFGFLPFNSPRQTNLMVIEGTLTKKMGEAAKIVYDQMPWPKFVIAMGACAID 119

Query: 119 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           GG+F++ Y +    D I+PV+ +IPGCPP P A      M    + +
Sbjct: 120 GGLFYNSYNIVRPKD-ILPVEYFIPGCPPRPEAVAQAIIMLQEKVRK 165


>UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=Proteobacteria
           RepID=NUOB2_RHOS1
          Length = 205

 Score =  166 bits (420), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 63/198 (31%), Positives = 93/198 (46%), Gaps = 16/198 (8%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           R     P        + +    L+   ++ S + +     G + C +E+   L+P++D  
Sbjct: 7   RPDAEAPEDRMAASHLFTRLDDLVAWSRKHSLWPFNF---GLSCCYVEMATALTPVYDQA 63

Query: 67  RFGIKVVPS-PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL 125
           RFG +V+ S PR AD+L+ +G V R M  P  R +    +P+  IS GAC NSGG++ D+
Sbjct: 64  RFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSGGMY-DI 122

Query: 126 YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG---ELDEQPAEI 182
           Y V  G D  +PVDVY+PGCPP P A +        LL+ KI          + E     
Sbjct: 123 YSVVQGVDSFLPVDVYVPGCPPRPEALMEALV----LLQSKIATEARPLQIRMGETGPAR 178

Query: 183 LHGDMVQPLRVKVDREAR 200
               +    R    REAR
Sbjct: 179 PFDPIP---RRDALREAR 193


>UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2
           Tax=Proteobacteria RepID=Q21TB3_RHOFD
          Length = 254

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 75/138 (54%)

Query: 25  SMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
            +  +L K+  RS  +  V  GGC+GCE+EI A  +  FD  R+GI +V SPRHAD L+ 
Sbjct: 115 KVSKALHKRFGRSLKLRSVSAGGCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALVL 174

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
           +G +TR M       W + P+PK+ I+ GAC  SGG+F D   +           +Y+PG
Sbjct: 175 SGPITRNMAQALQICWDAIPEPKLVIAVGACAISGGVFADSDALDRQFLDNFKPALYVPG 234

Query: 145 CPPTPAATLYGFAMALGL 162
           CP  P   + G    LG+
Sbjct: 235 CPAHPLTFISGIMDLLGI 252


>UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=Flavobacteriaceae
           RepID=C6X0Z2_FLAB3
          Length = 185

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 6/139 (4%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMR 93
           K S +         + C IE  A L+P +DA RFG+ +   SPR AD+L+  G +++ + 
Sbjct: 37  KYSLWPLPFAT---SCCGIEFMAVLNPTYDASRFGMERNSFSPRQADMLMVCGTISKKLG 93

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               + +    +P+  ++ GAC +SGGIF D Y V  G DKI+PVDVY+PGCPP P   +
Sbjct: 94  PVLKQVYTQMAEPRWVVAVGACASSGGIF-DTYSVLQGIDKIIPVDVYVPGCPPRPEQII 152

Query: 154 YGFAMALGLLE-QKIHARG 171
            G      L E + I  R 
Sbjct: 153 EGVMQVQALCEGESIRRRD 171


>UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_SALRD
          Length = 213

 Score =  164 bits (415), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 3/170 (1%)

Query: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSP 76
           T  +   + +        RS  +  +   G   C IE+     P +D+ RFG + +  SP
Sbjct: 7   TNGQGFFTTRVDTFLNWARSNSLMPM-PMGLACCAIEMMGFAGPKYDSARFGSEAMRFSP 65

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           R AD+++  G  +  M     R W    DPK CI+ GAC ++GG+ H  Y V  G D  +
Sbjct: 66  RQADLMIVAGWCSYKMSHAIRRVWDQMGDPKWCIAMGACASTGGM-HRCYGVVQGVDNFL 124

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
           PVDVYI GCPP P + L+        +  +       E  +         
Sbjct: 125 PVDVYISGCPPRPESVLHALMDIQEKIRNEYSVVQDYEFGKARERAPIMP 174


>UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (MbxJ) n=11
           Tax=cellular organisms RepID=C5A4Q2_THEGJ
          Length = 194

 Score =  162 bits (411), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 2/142 (1%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +   L +  ++ +      C GC G  IE+    +  +D ERFGI   P+PR AD+ L
Sbjct: 15  FKLFEPLFRWARKKSLWIVAFCTGCGG--IEMPPLATARYDFERFGIMPNPAPRMADLFL 72

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG VT       +  ++   DPK  +++G+C  +GG++ D Y V    DK +P+DV I 
Sbjct: 73  ITGYVTPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIA 132

Query: 144 GCPPTPAATLYGFAMALGLLEQ 165
           GC P P A + G    +  +E 
Sbjct: 133 GCMPRPEAVMDGIMEIMRKIEN 154


>UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea
           RepID=Q64DY8_9ARCH
          Length = 788

 Score =  162 bits (411), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 13/178 (7%)

Query: 17  MTVDESIASMKASLLKKIKR-----SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK 71
              D +I  + + +   ++R     S +         + C +E+  T +  +D ER G  
Sbjct: 4   TEKDRNIRILHSGVFTPLRRWATKWSLWPCHFLT---SCCGVELAHTGACGYDMERLGTL 60

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
            +   R A+ ++  G +TR M       W+  PDPK     G CG  GGIF + Y +   
Sbjct: 61  NMGISRQANFIMVEGTITRKMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRP 120

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
           +D IVPVD +IPGCP TP + L G       +++KI  R    +  +  E+  GD  +
Sbjct: 121 SD-IVPVDFFIPGCPITPESLLRGVRA----VQEKIEGRDNTTIRFKHVELPSGDGEE 173


>UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japonica Group
           RepID=C7IWD0_ORYSJ
          Length = 379

 Score =  162 bits (409), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 45/104 (43%), Positives = 61/104 (58%), Gaps = 1/104 (0%)

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
              FD +R+G+    SPR AD++L  G VT  M    +R ++  P+PK  I+ GAC  +G
Sbjct: 150 GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 209

Query: 120 GIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
           G+F  D Y    G DK++PVDVY+PGCPP P A +      LGL
Sbjct: 210 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLLGL 253


>UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Actinomycetales RepID=A1SQ82_NOCSJ
          Length = 162

 Score =  162 bits (409), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 73/129 (56%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           +  S  +  VD G CNGCEIE+     P++DAER+G ++V SPRHAD++L TG VT  M 
Sbjct: 34  LAGSVQIRHVDAGSCNGCEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNML 93

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
            P  R  ++ P P++ ++ G C  + G F   Y V G     V VD+ +PGCPP PAA +
Sbjct: 94  EPLRRTVEATPRPRLVLAVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIV 153

Query: 154 YGFAMALGL 162
                  G 
Sbjct: 154 DALRRVTGR 162


>UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Euryarchaeota
           RepID=C5U7Y6_9EURY
          Length = 154

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 86/147 (58%), Gaps = 10/147 (6%)

Query: 30  LLKKI--KRSAYVYRVDCGGCNGCEIE-IFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
           L+KKI  K+  +V  V  GGCNGC+IE + A  SP +DAE++ + +  +PR  DIL+ +G
Sbjct: 8   LMKKISRKKCIHVMLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTFNPRETDILIVSG 67

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD-------LYCVWGGTDKIVPVD 139
            VT+ ++    + ++  P+PK  ++ G+C  +GG++ +          V G  + I+PVD
Sbjct: 68  CVTKFVKESLRKIYEKIPEPKAVVAIGSCALTGGVYKNIGGDLGTSDFVAGPVENIIPVD 127

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQK 166
           V +PGC P P   + G   A+ L+ ++
Sbjct: 128 VKVPGCAPRPEDIISGIVKAIPLVVER 154


>UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Desulfovibrio
           RepID=B8IYV4_DESDA
          Length = 254

 Score =  160 bits (406), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/126 (40%), Positives = 73/126 (57%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            +RS  + +V   GCN CE +     + +FD  RFGI  V SPRHAD ++ TG V+  MR
Sbjct: 127 FRRSLKLRQVSAAGCNACEADCNVLGTLVFDLPRFGIDFVASPRHADGIVLTGPVSENMR 186

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
             A+  + + P+P++ ++ GAC  SGG+F D      G   I+PVD+++PGCPP P   L
Sbjct: 187 LAAIDTYNATPEPRLVVAVGACAISGGLFRDAPQCNNGIADILPVDLFVPGCPPNPWTIL 246

Query: 154 YGFAMA 159
            G  M 
Sbjct: 247 DGLLML 252


>UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=Acetobacter
           pasteurianus RepID=C7JEU9_ACEP3
          Length = 165

 Score =  160 bits (406), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/126 (43%), Positives = 72/126 (57%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
              ++ VD GGC GC +E+ A     +D E  G   V SPR+AD+LL TGA+TRAM    
Sbjct: 27  PLLLFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPVL 86

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
             AWQ+ P PK  I+ G+C   GG+F + Y V GG ++ V +D+ IPGCPP P   L G 
Sbjct: 87  EAAWQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNGL 146

Query: 157 AMALGL 162
               G 
Sbjct: 147 CSLFGK 152


>UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meiothermus silvanus
           DSM 9946 RepID=C1XWY8_9DEIN
          Length = 290

 Score =  160 bits (405), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
           +     V  G     + E+    +P  D  RFG  VV SPRHAD LL TG V++ MR   
Sbjct: 127 TLAFREVSAGNTGLDDTEVALAGNPFHDMSRFGFSVVASPRHADALLVTGPVSQNMREAL 186

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
            R +Q+ P+PK  ++ G     G IF +   V GG D++VPVDVY+PG P  PA+ L+G 
Sbjct: 187 WRTYQATPEPKGVVAVGNEAIGGEIFAESAAVVGGVDQVVPVDVYVPGSPARPASILHGL 246

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARR 201
            +  G  +Q +     G L E+  +++  +        V+  +RR
Sbjct: 247 LLLSGQTQQVLVG---GRLHEERTQVVSSE------AGVEASSRR 282


>UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospirillum
           RepID=A3ETD3_9BACT
          Length = 169

 Score =  159 bits (403), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 47/126 (37%), Positives = 64/126 (50%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           +  S  +  VD G CN CE+E+ A     +  ER GI+ V SPRHAD+LL TG V+  M 
Sbjct: 32  VGGSLSIRHVDAGSCNACELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQME 91

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
            P L   ++   PK  ++ G C   GG+F     V  G D + P    +PGCPP+P+  L
Sbjct: 92  QPLLDTHEAMASPKTVLAVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDIL 151

Query: 154 YGFAMA 159
                 
Sbjct: 152 RALRGL 157


>UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarchaeota
           RepID=Y1363_METJA
          Length = 151

 Score =  159 bits (402), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 8/139 (5%)

Query: 35  KRSAYVYRVDCGGCNGCEIEI-FATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           K+  +V  V  GGCN C+IE+  A  SP +DAE++ + +  +PR ADIL+ TG VT+ + 
Sbjct: 11  KKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVA 70

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHD-------LYCVWGGTDKIVPVDVYIPGCP 146
               + ++  P+PK  ++ GAC   GG++ +          V G  + I+PVDV +PGC 
Sbjct: 71  ESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCA 130

Query: 147 PTPAATLYGFAMALGLLEQ 165
           P P   + G   AL  + +
Sbjct: 131 PRPEDIIAGIVKALPKVIE 149


>UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 Tax=Magnetococcus
           sp. MC-1 RepID=A0L9R6_MAGSM
          Length = 213

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 8/150 (5%)

Query: 33  KIKRSAYVYRVDCG-GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
              RS  ++ +  G GC    IE+   ++P FDA R+G++   +PR +++ + +G ++  
Sbjct: 48  NWARSNSIWVLGFGTGCG--AIEMRPLMTPRFDAYRYGVQWRATPRQSNLFIVSGYLSVK 105

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
                +RA++    PK  +  G+C  +GG++ D Y      D  +PVD+Y+ GC P P A
Sbjct: 106 TLKRVVRAYEQMQSPKYVMGLGSCTINGGMYWDSYNTIKQLDDYLPVDLYVTGCMPRPEA 165

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAE 181
            L G         +KI   G GE     AE
Sbjct: 166 LLSGIEAL-----KKIIREGRGEGANIYAE 190


>UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea RepID=B1L7S0_KORCO
          Length = 174

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 8/146 (5%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
             I  S +           C  E  A+ +P +DAER G       R  ++L   G +++ 
Sbjct: 37  WGIAFSLWPVHFTT---ACCGAEFAASAAPKYDAERLGFLPFIGIRQCNVLFIEGTLSKK 93

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M   A+  ++  P+PK  I  GAC   GGIF + Y +    D I+PV+V+IPGCPP P A
Sbjct: 94  MAEAAIWVYEQMPEPKFVIGMGACAIDGGIFWNSYNIVRPMD-ILPVNVFIPGCPPRPEA 152

Query: 152 TLYGFAMALGLLEQKIHARGPGELDE 177
                A A+ +L++KI      + ++
Sbjct: 153 V----AQAIIMLQRKIRKGELVKYED 174


>UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=Staphylothermus
           marinus F1 RepID=A3DM92_STAMF
          Length = 179

 Score =  157 bits (398), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 8/168 (4%)

Query: 35  KRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            RS ++       C+ C  IE+   +    DAER+GI   PSPR AD+L+  G VT+   
Sbjct: 17  SRSIWMIHY----CSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVIMGYVTKKTL 72

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
              +R +   P+P+  +    C  +GG++ D Y      D+ +PVDV++PGC P     L
Sbjct: 73  KVLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPGCMPRAEDWL 132

Query: 154 YGFAMALGLLEQ-KIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
            GF      + + +I    P E   +  E+++ ++   +R K+  + R
Sbjct: 133 QGFLKLRKKISEGRIVNPRPVEEPGELEELIYREIE--MREKMMAKVR 178


>UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=1 Tax=Conexibacter woesei
           DSM 14684 RepID=UPI0001C31273
          Length = 229

 Score =  157 bits (397), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPR 77
           V+E + +     +    R   ++    G    C IE+ +      D  RFG +    SPR
Sbjct: 44  VEERVLTTTLDKVTAWARGNSMFPATFG-LACCAIEMMSLPGARLDIGRFGFEAFRASPR 102

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+L+ +G V+  M     R +    +P+  IS GAC +S G+F++   V    DK +P
Sbjct: 103 QADMLILSGRVSIKMAPIVRRIYDQMLEPRWAISMGACCSSMGVFNNYALV--PADKFMP 160

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           +DV++PGCPP P A  +        L  K+H   P    E+
Sbjct: 161 IDVHVPGCPPRPEALAHAIL----KLRSKVHGNPPAGWRER 197


>UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=cellular
           organisms RepID=A9BJL8_PETMO
          Length = 195

 Score =  157 bits (397), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPR 77
           ++++I   +        +S ++       C GC  +E+  T++  FD ER G+  + +PR
Sbjct: 17  LNDTITFWEKIKNIFRGKSLWMLHY----CTGCGAVELPPTMTARFDMERLGMGPMATPR 72

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+LL TG ++       +  ++    PK  + +G+C  +GGI++D Y V    D  +P
Sbjct: 73  QADVLLITGYLSVKTLRRVIYTYEQMMTPKYLVGFGSCTINGGIYYDSYAVINRLDYYLP 132

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           VD+Y+ GC P P A +  F     ++ +
Sbjct: 133 VDLYVAGCMPRPEAIMNTFKTLENMITK 160


>UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=Thermoproteaceae
           RepID=A4WJL4_PYRAR
          Length = 196

 Score =  156 bits (395), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 17/170 (10%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGG-----------CNGCEIEIFATLSPLFDAER 67
           +D+   SM  +L + + + A + ++   G            + C +E+  T  P FDAER
Sbjct: 1   MDKPTTSMSQALREFLLKKAKLEKIFNWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAER 60

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
           +G+    + R ++++L  G +TR M       ++  P+PK  ++ GAC   GG+F + Y 
Sbjct: 61  WGVLPFHTMRQSNVILVEGTITRKMAKVLKMVYEQMPEPKFVLAMGACAVRGGLFWNSYH 120

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
           V      +  VDVYI GCPPTP A +  F M    L  KI  + PG   E
Sbjct: 121 VVQVDTVVP-VDVYIAGCPPTPEAVVRAFIM----LHNKIKGK-PGPFIE 164


>UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermoplasmatales
           RepID=Q978D5_THEVO
          Length = 222

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP 76
            T D+ I ++K +     +RS +V+ +D G C  C +E  +  SP +DA R GI +V +P
Sbjct: 69  PTGDQRIFTIKKT-EDTFRRSFHVFPIDSGACGACNMEFLSIFSPQYDANRLGIFMVNTP 127

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           R+AD L+  G +T  M+    RA+++ P+PK+ I+ GAC  +GGI  +        D+  
Sbjct: 128 RYADALIVMGVMTPGMKEALDRAYEAMPEPKLVIAMGACAVTGGIMGE-----NPLDR-E 181

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
             +V I GCPP+P   +     A+    +
Sbjct: 182 KYNVEIAGCPPSPYTLIAALNAAMKDKRK 210


>UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q6C2Q1_YARLI
          Length = 216

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 2/125 (1%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            P +  +   +   ++    ++ ++       G   C +E+    +P +D +R GI    
Sbjct: 52  KPNSAVDYTLTTLDAVANWARQGSFWPVTF--GLACCAVEMMHVSAPRYDQDRLGIIFRA 109

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SPR +DI++  G +T  M     + +   P+P+  IS G+C N GG +H  Y V  G D+
Sbjct: 110 SPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSCANGGGYYHFSYSVVRGCDR 169

Query: 135 IVPVD 139
           IVPV 
Sbjct: 170 IVPVR 174


>UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shigella sp. D9
           RepID=UPI0001B52F0A
          Length = 173

 Score =  154 bits (389), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/116 (69%), Positives = 94/116 (81%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           + P     +  P+T+DE    MK  LL+ I+RSAYVYRVDCGGCN CEIEIFA ++P+FD
Sbjct: 1   MSPVLTQHVSQPITLDEQTQKMKQHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFD 60

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           AERFGIKV+ SPRHADILLFTGAVTRAMR PALRA++SAPD KIC+SYGACG  GG
Sbjct: 61  AERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGAGGG 116


>UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=13 Tax=Bacteria
           RepID=B5E8B5_GEOBB
          Length = 332

 Score =  153 bits (386), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 4/178 (2%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS-PLFDAERFGIKVVPSPRHADILLF 84
           M+  + +       ++R++ G CNGC++E+  T +   FD E+ G +    P  ADILL 
Sbjct: 1   MQDQVKETPAEPVRLFRINTGSCNGCDVELAVTAAVDEFDVEQLGCRYTEEPHEADILLI 60

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
           TG +T   R+ ALR +  AP+ K+ ++ G C  SGG+F D Y V G   + +PVD+ +PG
Sbjct: 61  TGPLTVRARNEALRLYAEAPETKVTVAVGVCPVSGGVFRDSYAVDGPVQRYLPVDLNVPG 120

Query: 145 CPPTPAATLYGFAMALGLLEQKIHARG---PGELDEQPAEILHGDMVQPLRVKVDREA 199
           CPP P A L G A A  L   +              +PA+          R+  D +A
Sbjct: 121 CPPRPQALLAGIAQARDLWRARSKGVDAVFAAPPLAKPADEPAQQFPIRGRMSFDPKA 178


>UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Metallosphaera sedula DSM 5348 RepID=A4YGN5_METS5
          Length = 203

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/148 (36%), Positives = 71/148 (47%), Gaps = 8/148 (5%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
           PV     E++           KRS Y+Y +D G C GC +E+    SP +D  RFGI   
Sbjct: 60  PVFSPTGETLTPRVERSDVTFKRSFYLYPLDAGSCGGCNLELRLISSPQYDMTRFGIFFT 119

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            +P+HAD LL  G + + M     RA+   P PK+ I  G C  SGG+         G  
Sbjct: 120 NTPKHADALLIMGNLGKRMEEVIRRAYDVIPSPKLVILLGTCAISGGV--------TGIP 171

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALG 161
             +  DV +PGCPPTPA+ L     A G
Sbjct: 172 PDIRGDVIVPGCPPTPASILDALIKAKG 199


>UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=2
           Tax=Gluconacetobacter diazotrophicus PAl 5
           RepID=B5ZJ00_GLUDA
          Length = 166

 Score =  152 bits (383), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 71/128 (55%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            R   V+ V+ GGC GC +E+ A     +     GI  V +PR A++LL TG +TRAM  
Sbjct: 22  ARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAP 81

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
               AW + P+P+  ++ GAC   GG F + Y V GG +    +D+ +PGCPP+PAA L 
Sbjct: 82  VLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDMTVPGCPPSPAAILA 141

Query: 155 GFAMALGL 162
           G A  L  
Sbjct: 142 GLARVLER 149


>UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=19 Tax=Bacteria
           RepID=B1ZSE7_OPITP
          Length = 285

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 71/129 (55%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A++   L K   RS  + +V  GG    E ++    +  +D  RFGI+ V SPRHAD L+
Sbjct: 140 AALDEKLRKMFGRSLRLRQVSAGGSGAEEADLNVLGTIGWDLGRFGIQFVASPRHADGLV 199

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG V++ M     + W++ P PKI I+ GA   SGG+F     V  G D IVPVD+YIP
Sbjct: 200 VTGPVSKGMELALRKTWEAMPAPKIVIAVGAEAISGGVFAGHPQVRNGVDAIVPVDLYIP 259

Query: 144 GCPPTPAAT 152
           G PP P   
Sbjct: 260 GWPPHPLTI 268


>UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=Sulfolobus
           RepID=D2PJN5_SULIS
          Length = 201

 Score =  150 bits (378), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 8/129 (6%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            KRS Y+Y +D G C GC +E+    SP +D  RF I    +PRHAD L+  G +T  M+
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               +A+++ P+PK+ I  GAC  SGGI  +           +   V I GCPP P   L
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEGV--------PLEAVVEISGCPPNPFTIL 192

Query: 154 YGFAMALGL 162
                  G 
Sbjct: 193 EALMKVKGK 201


>UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Sulfurospirillum deleyianum DSM 6946
           RepID=D1B297_SULD5
          Length = 138

 Score =  150 bits (378), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/138 (39%), Positives = 73/138 (52%), Gaps = 1/138 (0%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFAT-LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
           +  + YVYR++ G CNGC++EI A+ L P F  +  G      P  A+ILL TGA+T   
Sbjct: 1   MNDTLYVYRINTGSCNGCDVEILASVLLPKFGFDALGCVYTNDPTLANILLVTGAITARS 60

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAAT 152
                 A +  P  KI ++ G C  SGG+F D Y + G  D  V VDV I GCPP+P   
Sbjct: 61  TPYLQAALKQLPSKKIVVALGICPISGGVFRDSYAITGPLDTFVDVDVNISGCPPSPKEI 120

Query: 153 LYGFAMALGLLEQKIHAR 170
             G A A  L  ++ HA 
Sbjct: 121 AQGLAQACELWRERYHAH 138


>UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=Ignicoccus
           hospitalis KIN4/I RepID=A8A9X3_IGNH4
          Length = 207

 Score =  147 bits (370), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 13/159 (8%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A +K +L    + S ++  +   G   C IE+        D ER G+    +PR  D++L
Sbjct: 18  APVKEALKWSRRNSLWLLHL---GIMCCAIEMMQAAFAFHDFERLGVLARATPRQVDVIL 74

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV----- 138
             G V R +     R +   P P+  I  G C  +GG +     V  G  +++       
Sbjct: 75  INGPVNRKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDGIHEVIESLPEEY 134

Query: 139 --DVYI---PGCPPTPAATLYGFAMALGLLEQKIHARGP 172
             DV++    GCPP P   L        L+ +   AR P
Sbjct: 135 RKDVHVVNLAGCPPRPEGLLRAILKMEELINEGDLARAP 173


>UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulibacter bethesdensis
           CGDNIH1 RepID=Q0BPG7_GRABC
          Length = 174

 Score =  147 bits (370), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 1/152 (0%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
           D   +P   TV   IA  ++S   K+ ++  +  V+ GG + C +E+ A  +      R 
Sbjct: 17  DTASLPHAETVAALIARRRSSARPKLGQALSILHVESGGGSACLLELEALRAAPGLLARH 76

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           G++ V SP HADILL TG     + S   +AW++ P P+  I+ G      G+    Y  
Sbjct: 77  GLRFVTSPLHADILLITGDGCHNLTSAIHQAWEAMPGPRWAIAVGDGAAGDGLLRGSYAS 136

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
            G  ++ +P D+ IPG PP     L G    +
Sbjct: 137 TGNMEE-IPFDLVIPGSPPAADTILSGLRALV 167


>UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Caminibacter
           mediatlanticus TB-2 RepID=A6DAC3_9PROT
          Length = 140

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 38  AYVYRVDCGGCNGCEIEIFAT-LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
             ++R++ G CNGC++EI A+ +S  FD ++ G + + +   ADI + TG VT       
Sbjct: 7   PKIFRINTGSCNGCDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFL 66

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
               ++   P + IS G C  + GIF D Y + G  D  V VDV + GCPP P A L G 
Sbjct: 67  KEVIKNHKKPYVVISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGV 126

Query: 157 AMALGLLEQK 166
             A+ +L++K
Sbjct: 127 KTAIDILKRK 136


>UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2
           Tax=Aciduliprofundum boonei T469 RepID=B5ICA0_9EURY
          Length = 179

 Score =  144 bits (364), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 12/131 (9%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             +S +++ +D G C+ C  EI    SP +D  R G    P PRHADILL  G  T  M 
Sbjct: 60  FNKSVHIFVLDVGSCSSCNREISLLNSPQYDLHRLGFFFTPVPRHADILLVIGEPTEKMI 119

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
                A++  P+PKI ++ GAC N               +KI+ VD  + GCPP P A L
Sbjct: 120 PVLKEAYEQMPEPKIVMTAGACANE------------KIEKIIKVDARVSGCPPQPIAIL 167

Query: 154 YGFAMALGLLE 164
               M  G   
Sbjct: 168 KALLMLTGRWN 178


>UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus
           profundus DSM 5631 RepID=D2RET0_ARCPR
          Length = 709

 Score =  142 bits (357), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 9/162 (5%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           M      K   S +   +       C +E+    +  +DAER G       R  ++++  
Sbjct: 1   MLKEWGTKW--SLWPVHLVT---ACCGVELAHAYACGYDAERIGSLNYGICRQTNLIIVE 55

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           GA+TR M       W+  P+PK  I  GACG  GG+F + Y +    D +  VDV++PGC
Sbjct: 56  GAITRKMARVLRITWEQMPNPKFVIVMGACGIKGGLFKNSYHMVRPWDVVP-VDVFVPGC 114

Query: 146 PPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM 187
           PPTP A + G       +E K       + +E   E+  G +
Sbjct: 115 PPTPEALIRGIVALQKKIEGK---EDFDKFEEVSIEVEKGKV 153


>UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophilus torridus
           RepID=Q6L0U2_PICTO
          Length = 202

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 8/141 (5%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA 79
           ++ I+ +  S+ KK ++S  +Y +D G C  C  E+F+   P +D  R+ I    +PRHA
Sbjct: 69  NDDISIISGSIDKKFRKSLNIYSIDSGTCGACNSELFSISIPEYDLTRYHIFFTNTPRHA 128

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D ++ +G    +M+     A  + P P   I  GAC  SGGI         G+   +   
Sbjct: 129 DAIILSGIYNESMKDVIDNALGAMPKPGYLILLGACALSGGII--------GSGHEIKAV 180

Query: 140 VYIPGCPPTPAATLYGFAMAL 160
           + IPGCPP P   L G    +
Sbjct: 181 LEIPGCPPNPYTILKGLRRLM 201


>UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=Selaginella
           uncinata RepID=Q2WGH7_SELUN
          Length = 215

 Score =  140 bits (353), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 3/171 (1%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
           R   G+    T D  I +       + +  +        G + C  E    +    D++R
Sbjct: 28  RPTPGVDRAATPDSIIPTTPNDFTNRARLPSSRPPPY--GTSCCFTEFAPLIGSRSDSDR 85

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH-DLY 126
            G     SPR AD+++  G  T  M    +R+++  P+PK  I+ GAC  +GG+   D +
Sbjct: 86  HGSVPRSSPRQADLIITAGTATTKMAPSLVRSYEQTPEPKHAIAMGACTVTGGMLSTDPH 145

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
               G DK +P D Y PG PP P A +         + ++ +     +L E
Sbjct: 146 STVRGVDKSIPADTYPPGRPPKPEAIVDATIKPREKVSRETYDNYRDKLRE 196


>UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Desulfurococcus
           kamchatkensis 1221n RepID=B8D5A0_DESK1
          Length = 337

 Score =  140 bits (353), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 80/198 (40%), Gaps = 7/198 (3%)

Query: 31  LKKIKRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVT 89
                RS ++       C+ C  +E    +    D ER+G    PSPR +D+ +  G +T
Sbjct: 7   RWAYARSLWMIHY----CSACGAVEFPPLVMAPLDWERYGYMPTPSPRQSDLYIGMGYLT 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
           +      L  ++  P+PK+ ++   C ++GG + D Y  +   D  + V+ ++PGC P P
Sbjct: 63  KKTVKLVLNMYRQMPEPKLVLAGCNCTSTGGPYWDSYATYKRLDDFIEVEGWVPGCMPMP 122

Query: 150 AATLYGFAMALGLLEQKIHARGPGELDEQPAE--ILHGDMVQPLRVKVDREARRLAGYRY 207
              L         L ++       ++     +      ++ +  R + + + +  +    
Sbjct: 123 DDYLSMIEYVRKDLGKRPLNAYVSKIKPDAFKKISEWEELEKQWRKEYEEKIKEDSSKPV 182

Query: 208 GRQIADDYLTQLGQGEEQ 225
             +  + Y +   + E+ 
Sbjct: 183 SYEFKETYPSCYEKDEKS 200


>UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW77_ACICJ
          Length = 164

 Score =  139 bits (350), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 65/138 (47%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A + AS    + RS  V  VD G C GCEIEI A           GI +V   R ADILL
Sbjct: 12  ARLAASGQALLGRSLAVRHVDAGSCGGCEIEIAACRRLRGGMAAHGIAMVEDLRAADILL 71

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG  TR +     ++      P+  ++ G C   GG+F  +  V GG   ++PVD+ I 
Sbjct: 72  VTGVATRNLAEAVRKSLAGMAPPRFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIA 131

Query: 144 GCPPTPAATLYGFAMALG 161
           GCPP P   L G    + 
Sbjct: 132 GCPPAPRQILAGLVALVE 149


>UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LSU0_ACIC1
          Length = 269

 Score =  139 bits (349), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 92/178 (51%), Gaps = 21/178 (11%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKR---SAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           RD   +P     D+++A+++A L ++ +    S +V  VD G     E E+ A L+P++D
Sbjct: 92  RDLLVVPALPETDDALAAVRAELARRTRLLRRSIHVRHVDAGSDGADEWEVLALLNPVYD 151

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD 124
             R GI    SPRHAD+LL TG  +R M +P  R  Q+AP P + I+ G    SGG+ H 
Sbjct: 152 IHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIAAGTDAISGGLVHP 211

Query: 125 LYCVWGGTDKIV------------------PVDVYIPGCPPTPAATLYGFAMALGLLE 164
            Y   GG   ++                   VD+++PG PPTP A L+   +A+G L+
Sbjct: 212 TYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPTPFALLHALLLAMGRLQ 269


>UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN
          Length = 214

 Score =  132 bits (333), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           P+     P P +  E + +    L+   +RS+        G   C +E+    +P +D +
Sbjct: 47  PKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTF--GLACCAVEMMHMAAPRYDMD 104

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICIS--YGACGNSGGIFHD 124
           RFG+    SPR +D+++  G +T  M     R     PD    +   +G     G +   
Sbjct: 105 RFGVVFRASPRQSDVMIVAGTLTNKMAPAL-RKSPPRPDAGAALRGLHGELRQRGRLLP- 162

Query: 125 LYCVWGGTDKIVPVDVYI-PGCPPTPAATLYGFAMALGLLEQKIH 168
           L+ + G   +      ++ P  P T  A LYG       ++++  
Sbjct: 163 LFLLGGEGLRPHRARGHLHPRLPTTAEALLYGILQLQRKIKRERR 207


>UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans
           RepID=Q5FU78_GLUOX
          Length = 161

 Score =  130 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 59/124 (47%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           R   +Y ++ GGC GC +EI +     F  E+ G   V  P  AD LL TGAVTR     
Sbjct: 35  RPIGLYVLEAGGCEGCFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVCAEM 94

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
             R W++ P  +  I+ GAC   GG F   Y   GG + + PV   I GCPP+P   L  
Sbjct: 95  VDRVWRAMPPGRSLIAVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSPDDILRA 154

Query: 156 FAMA 159
               
Sbjct: 155 LQEL 158


>UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteriaceae
           RepID=B2N3C8_ECOLX
          Length = 124

 Score =  124 bits (312), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           +DV+IPGCPPTPAAT++GFA+ALGLL+QKIHA    +      + L   +    R+ ++R
Sbjct: 6   IDVWIPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIER 65

Query: 198 EARRLAGYRYGRQIADDYLTQLGQGE--EQVARWLEAENDPRLNEIVSHLNHVVE 250
           EARRLAGYR GR+I D  L  L       +V  WL   +DPRLN IV  L  V+ 
Sbjct: 66  EARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLRDADDPRLNSIVQQLFRVLR 120


>UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax=Leptospira biflexa
           serovar Patoc RepID=B0SCU6_LEPBA
          Length = 273

 Score =  123 bits (310), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 11/130 (8%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           KR      V  GG N  E E+ A+ + +FD+ER GI+ V SP+HAD ++F+G ++  M  
Sbjct: 136 KRGFLYREVAAGGNNTVESELNASFNSVFDSEREGIRCVASPKHADTIVFSGPISEQMEG 195

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP--VDVYIPGCPPTPAAT 152
           P   AW    +P+  I+ G    SGG+F             +P   D+YI G PP P   
Sbjct: 196 PLQTAWDVLSEPRALIACGTEAVSGGLFPKG---------KIPKEPDLYISGDPPRPDVI 246

Query: 153 LYGFAMALGL 162
           L GF + +G 
Sbjct: 247 LQGFRLLIGR 256


>UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax=Leptospira
           RepID=Q04P25_LEPBJ
          Length = 273

 Score =  120 bits (302), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 12/168 (7%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRS-----AYVYRVDCGGCNGCEIEIFATLSPL 62
           R+A  +     + +    M+   +K+ +++          V   G N  E EI A+ + L
Sbjct: 101 REALKVTYTNGMPDEKPEMETEEVKRFRKTTKKTGFQFREVAASGNNTTEAEINASFNAL 160

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           FD+E   I+VV SP+HAD L+++G V   M  P   AW++ P PK  ++ G+   SGG+F
Sbjct: 161 FDSEASKIRVVASPKHADALVYSGPVGPNMEEPLNTAWETMPSPKALVACGSEAVSGGLF 220

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                  G   K    D++I G PP P   +  F   +G  E    A 
Sbjct: 221 K-----LGKLPK--EPDLFIGGDPPRPDVIISAFRYLMGTRELSFTAE 261


>UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           n=1 Tax=Taeniopygia guttata RepID=UPI000194DF39
          Length = 183

 Score =  113 bits (282), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 41/154 (26%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
           VP +  E + +    L+   +RS+        G   C +E+    +P +D +RFG+    
Sbjct: 64  VPSSRGEYVIAKLDDLVNWARRSSLWPMTF--GLACCAVEMMHMAAPRYDMDRFGVVFRA 121

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SPR AD+++  G +T  M     +       P                            
Sbjct: 122 SPRQADVMIVAGTLTNKMAPALRK------KP---------------------------- 147

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
             P       CPPT  A LYG       ++++  
Sbjct: 148 --PCRG---RCPPTAEALLYGILQLQRKIKREKR 176


>UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2H7B9_CHAGB
          Length = 189

 Score =  106 bits (264), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 53/150 (35%), Gaps = 48/150 (32%)

Query: 15  VPMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
            P +V E   S    L+   ++ S +       G   C IE+     P +D +R GI   
Sbjct: 74  RPNSVTEYALSTLDGLINWARQGSLWPMSF---GLACCAIEMMHLSMPRYDNDRQGIIFR 130

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR +D+++  G                                            G D
Sbjct: 131 ASPRQSDVMIVAG--------------------------------------------GVD 146

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
           +IVPVD+Y+PGCPPT  A  YG       +
Sbjct: 147 RIVPVDIYVPGCPPTAEALQYGIFQLQKKM 176


>UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, putative n=1
           Tax=Ricinus communis RepID=B9SD17_RICCO
          Length = 188

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPA 150
           M    +R ++  P+PK  I+ GAC  +GG+F  D Y    G DK++PVD Y+ GCPP P 
Sbjct: 1   MAPSLVRLYEQIPEPKYVIAMGACTITGGMFSTDSYSTIRGVDKLIPVDAYLSGCPPKPE 60

Query: 151 ATLYGFAMALGLLEQKIHARGPGELDEQP 179
           A +         L ++I+        E  
Sbjct: 61  AVIDAITKLRKKLSREIYEDRIRSQPENR 89


>UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (NADH-ubiquinone oxidoreductase 20 kDa subunit) (Complex
           I-20kD) (CI-20kD) (PSST subunit). n=1 Tax=Gallus gallus
           RepID=UPI0000EC9F96
          Length = 176

 Score = 91.6 bits (226), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 12/170 (7%)

Query: 7   PRDANGIP----VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           P+ +  +P    VP +  E I +    L+   +R A  +       +     +   L   
Sbjct: 6   PKSSAVVPKKSYVPTSRGEYIVTKLDDLINWARRRACFW---TECFHCVASNMGYLLWKS 62

Query: 63  FDAERFG-IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +   FG I++      +   L        +      A    P+      + +C N GG 
Sbjct: 63  HERSSFGLIQLTAHMPMSTACLPARPHENHLSPHLTSAAGLGPELCFTNIFCSCANGGGY 122

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       L++KI    
Sbjct: 123 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQ----LQKKIKRER 168


>UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n=1 Tax=Thermococcus
           gammatolerans EJ3 RepID=C5A2R7_THEGJ
          Length = 229

 Score = 80.8 bits (198), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 17/136 (12%)

Query: 30  LLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFT 85
           L++K+K    V  VD  GC GC + I      L +     I  +          D+ L T
Sbjct: 3   LMEKLK----VLHVDFAGCEGCNVSIIRAYPKLMNEIDLDISYLRDGSCQYGEYDVALIT 58

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH---------DLYCVWGGTDKIV 136
           G              +     ++ +++G+C + GGI             +  +   + ++
Sbjct: 59  GGACMNEPRILEELKEIREKARVVVAFGSCASLGGILRFARGGQEPRPDHRNFQPINSVI 118

Query: 137 PVDVYIPGCPPTPAAT 152
           PVD  IPGCPPTP   
Sbjct: 119 PVDYSIPGCPPTPQML 134


>UniRef50_C1GND6 NADH-ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Paracoccidioides brasiliensis Pb01
           RepID=C1GND6_PARBA
          Length = 159

 Score = 80.5 bits (197), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATL 59
           +S L   R+A  I   +++ E        ++   +  S +       G   C +E+ A  
Sbjct: 16  VSTLGVIREAERISSLISLQEEKNGSIDKVVNWAREGSLWPLSF---GLACCNMEMMAVS 72

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
            P +D +R G     SPR +D+++   AVT+      
Sbjct: 73  MPRYDQDRLGTIFRASPRQSDVIIVADAVTKQDGPRL 109


>UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 Tax=Ixodes
           scapularis RepID=B7QG38_IXOSC
          Length = 162

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            + +    +P+  IS G+C N GG +H  Y V  G D+I+PVD+Y+PG
Sbjct: 78  RKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 125


>UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
           RepID=UPI0000E81815
          Length = 187

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 115 CGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           C N GG +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       L++KI    
Sbjct: 127 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQ----LQKKIKRER 179


>UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=Thermococcus
           onnurineus NA1 RepID=B6YTV9_THEON
          Length = 225

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFTGAVTRAMR 93
             V  VD GGC GC + I      L D     I  +          D+ + TG       
Sbjct: 4   LKVLHVDVGGCEGCNVSIIRAYPKLMDLIELDISYLRKDECKLDEYDVAIITGGACMNEP 63

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIF---------HDLYCVWGGTDKIVPVDVYIPG 144
                  +        +++G+C    GI             +  +   + ++ VD  IPG
Sbjct: 64  RILEELKEIREKAHTVVAFGSCATFSGILRFCRGGQEPRPDHRNFQPINSVIKVDYSIPG 123

Query: 145 CPPTPAAT 152
           CPPTP   
Sbjct: 124 CPPTPQML 131


>UniRef50_Q6A6I9 NADH dehydrogenase subunit n=2 Tax=Propionibacterium acnes
           RepID=Q6A6I9_PROAC
          Length = 132

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 15/120 (12%)

Query: 39  YVYRVDCGGCNGCEIEIFAT---LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
            VY VD      C +E  A     +P+ +    G  +        ++L +G VT  +   
Sbjct: 11  SVYVVD-LALACCGVESGAAVLANAPVREEIPDGAPI--------VVLVSGTVTTGLAPV 61

Query: 96  ALRAWQSAPD--PKICISYGACGNSGGIFHDLYCVWGGT-DKIVPVDVYIPGCPPTPAAT 152
                       P   +++GAC  +GG + D   V  G  D  V  D +IPGCPP P   
Sbjct: 62  VSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPPGPETL 121


>UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2 Tax=Roseiflexus
           RepID=A5UWN9_ROSS1
          Length = 127

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPAL 97
             VYR + G C GC++E+ A L+         I    +P  AD+LL TG +T   +   +
Sbjct: 2   IQVYRFNTGSCGGCDLEVIAALAAA-----ADIDWAATPHEADVLLLTGPLTTDTKKAFM 56

Query: 98  RAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP--GCPPTPAATLYG 155
              Q        I+ G C   G  F       GG   I  + V++   GCPPTP   +  
Sbjct: 57  ALLQELDHRAPIIAVGRCAIDGHPFG-----RGGVAVIPNLTVHLSLDGCPPTPTQIVEA 111

Query: 156 FAMALGLLEQKIHARG 171
                   E       
Sbjct: 112 IRTIAMDREDGAAGER 127


>UniRef50_C7J5D7 Os07g0116900 protein n=3 Tax=Oryza sativa RepID=C7J5D7_ORYSJ
          Length = 114

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 48  CNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRA 99
              C +E+    +  +D +RF +   PSPR +D ++  G +T  M     + 
Sbjct: 58  LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPALGKT 109


>UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota RepID=A6UVU9_META3
          Length = 227

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 21/138 (15%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIK------VVPSPRH---ADILLFTGAVTR 90
           V  V    C GC + +  T   L D    G         +   R    ADI+L  G+V  
Sbjct: 4   VAHVQLSSCCGCLVSLTDTYEKLLDV--LGAIDLVYSQTIADAREIPEADIILVEGSVCL 61

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIF---------HDLYCVWGGTDKIVPVDVY 141
                   A       KI ++ GAC  +GGI            ++  +    ++V  D+ 
Sbjct: 62  DDHHAMEIAQDVGKKAKILVALGACAATGGITRFCRGGQMSKPIHSSFSPITEVVKCDLA 121

Query: 142 IPGCPPTPAATLYGFAMA 159
           IPGCPP+P   + G   A
Sbjct: 122 IPGCPPSPE-IIVGLITA 138


>UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax=Euryarchaeota
           RepID=FRHG_METBF
          Length = 259

 Score = 66.6 bits (161), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 53/147 (36%), Gaps = 23/147 (15%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLF----DAERFGIKVV-PSPRH---ADILLFTGAVT 89
             +  V   GC GC + +      L     D       +     RH    D+ L  G+V 
Sbjct: 5   IKIGHVHMSGCTGCLVSLADNNLGLIKILDDYADLVYCLTLADVRHIPEMDVALVEGSVC 64

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI--F----------HDLYCVWGGTDKIVP 137
                      ++    KI ++ G+C   G I  F          H+ Y        ++ 
Sbjct: 65  LQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHESYL---PIGDLID 121

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLE 164
           VDVYIPGCPP+P        MA  LLE
Sbjct: 122 VDVYIPGCPPSPELIRNVAVMAYLLLE 148


>UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 Tax=Bacteria
           RepID=C5Q420_STAAU
          Length = 37

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 219 LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
           LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR
Sbjct: 1   LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 37


>UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLU1_SYNFM
          Length = 184

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 49/156 (31%), Gaps = 42/156 (26%)

Query: 45  CGGCNGCEIEIFATLSPLFDAERF-GIKVVPS------PRHADILLFTGAVTRAMRSPAL 97
            GGC GC + +      L D      I   P       P   D+ L  GA          
Sbjct: 16  FGGCAGCHMSLLDLDERLIDVVGLVDIVYSPVADIKVFPEGVDVTLVEGACCN--DENVH 73

Query: 98  RAWQSAPDPKICISYGACGNSG----------------GIFHDLY------CVWG----- 130
            A +     KI I++G C  +G                 ++ +         V G     
Sbjct: 74  LAHEVRERSKIVIAFGDCAVTGNVPSMRNRLDRDQMINSVYFEGPGKPPPTSVLGHFLPT 133

Query: 131 ------GTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                    +++PVD+++PGCPP P          L
Sbjct: 134 LIPKVLPLHQVIPVDIFLPGCPPDPERIWAAIVALL 169


>UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13
           Tax=Methanococcales RepID=VHUG_METJA
          Length = 288

 Score = 53.5 bits (127), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 54/180 (30%), Gaps = 42/180 (23%)

Query: 47  GCNGCEIEIFATLSPLF----DAERFGIKVVPSPRHA----DILLFTGAVTRAMRSPALR 98
           GC+GC I +      L     + E     ++  P+      D+ L  G +          
Sbjct: 15  GCSGCHISLLDLHDKLLEVLPNLEIVYAPIIADPKEIPEGIDVFLVEGGIRNEHDEHL-- 72

Query: 99  AWQSAPDPKICISYGACGNSGGI------------FHDLYCV------------------ 128
             +     KI I++G C   GGI             + +Y                    
Sbjct: 73  IHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKEELLNYVYSTDSTENKGEIPSEEIPPLE 132

Query: 129 --WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
                    + VD  IPGCPPTP          L   E K+  +   +   +  E +  +
Sbjct: 133 EYVKPIKDFIKVDYTIPGCPPTPKMIADAIIALLNGEEPKLPTKIVCDECPRKKENVFPE 192


>UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=6 Tax=Bacteria
           RepID=B8G3U7_CHLAD
          Length = 177

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 56/165 (33%), Gaps = 64/165 (38%)

Query: 46  GGCNGCE----------IEIFA----TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           GGC+GC           IE+ A      SP+ D +RF       P H D+ L  GA+   
Sbjct: 12  GGCSGCHMSLLDLDEWLIELAAQADLVYSPIADVKRF-------PSHVDVTLIEGAIANN 64

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSG-------------------------------- 119
                  A  +  + KI +S+G C  SG                                
Sbjct: 65  --EHLELAHIARRNSKIIVSFGDCAVSGNVTALRNPLGSPEQLLQQVYIEHSDPRGKIPH 122

Query: 120 --GIFHDLYCVWGGTDKIVPVDVYIPGCPPTP-------AATLYG 155
             GI   L        +++PVD Y+ GCPP+         A L G
Sbjct: 123 EPGIVPVLLDKVMPVHQVIPVDYYLSGCPPSAPRIRALLEALLTG 167


>UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 Tax=Dictyoglomus
           RepID=B5YB68_DICT6
          Length = 180

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 56/175 (32%), Gaps = 45/175 (25%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP--------RHADILLFTGAV- 88
             V  V C GC+GC +        L +    G+++  +P           DI +  GAV 
Sbjct: 4   IKVASVWCEGCSGCHMSFLDMDERLVELINKGLEINATPITDLKIPDEGTDIGIIEGAVA 63

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLYCVWGG- 131
           T           +     KI ++ G C   GGI                +        G 
Sbjct: 64  TDHHEEEVKMMRERC---KIIVALGDCAVFGGIPTMRNYIPREELLERGYITTESTVDGK 120

Query: 132 ----------------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                            ++++ VD+Y+PGCPP+  A  Y     L     K+   
Sbjct: 121 IPTSPEIGKHLPKTKAVNEVIKVDLYVPGCPPSADAIYYVLKEVLEGRIPKLEGE 175


>UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Coriobacteriaceae
           RepID=C7MNR7_CRYCD
          Length = 439

 Score = 51.2 bits (121), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 17/99 (17%)

Query: 81  ILLFTGAVTRAMRSPALRA---------WQSAPDPKICISYGACGNSGGIFHDLYCVWG- 130
           IL++ GAV       ALR           ++AP     ++ G+C  +GG         G 
Sbjct: 125 ILIYEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAGA 184

Query: 131 -GTDKIVP------VDVYIPGCPPTPAATLYGFAMALGL 162
            G +K +         V IPGCP  P   +      + +
Sbjct: 185 VGVEKFLKESGINVPVVNIPGCPANPEWLVAVLVDVVMM 223


>UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanocaldococcus
           RepID=Y726_METJA
          Length = 216

 Score = 51.2 bits (121), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 8/168 (4%)

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG-------T 132
           DI+L  GAV         +  +   + K+ I+ G+C  SGG    L  +  G        
Sbjct: 26  DIVLVGGAVNLDDEEEVKKIMEIRKNSKVLIAVGSCAVSGGFQRMLIGLENGFPQRFVRI 85

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLR 192
             +V VD  I GCPP            +   ++ + +    +  E  A     D    + 
Sbjct: 86  GDVVKVDYAIIGCPPDEEEVERIVKAVIEKDKEIVDSYLILKPYEVIAGKPIIDAYMKVN 145

Query: 193 VKVDREARRLAGYRYGRQIADDYLTQLGQ-GEEQVARWLEAENDPRLN 239
             +    + L      + I D++ T  G    +  A  L  +  P++N
Sbjct: 146 DVLLTSNKELCLGCDDKPINDEFCTGCGTCVAKCPANALTIDEKPKVN 193


>UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing
           hydrogenase), gamma subunit n=2 Tax=Euryarchaeota
           RepID=Q0W6J6_UNCMA
          Length = 305

 Score = 51.2 bits (121), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 65/200 (32%), Gaps = 53/200 (26%)

Query: 46  GGCNGCEIEIFAT---LSPLFDAERFGIKVVPSP-----RH---ADILLFTGAVTRAMRS 94
           G C GCEI +  T   L P+ D     I+ V  P     +H   A + + +G V      
Sbjct: 12  GACAGCEISVLDTHEALLPILDK----IEFVYIPVLMDTKHIPKATVGIVSGCV--RNSD 65

Query: 95  PALRAWQSAPDPKICISYGACGNSGG------------IFHDLYCV-------------- 128
                 +   +  I ++ G+C   GG            +  ++Y                
Sbjct: 66  NLHELLEMRKNVDILVALGSCACFGGTPGMANLYTPEQLLEEVYVTTKSTKNEIQRHPYM 125

Query: 129 ---------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP-GELDEQ 178
                           V VD  IPGC P PA         LG  E K+  +    E   +
Sbjct: 126 DGLPTLLPDAKPLSDYVKVDAMIPGCGPRPAMIAQAILSLLGAAEYKLSTKSVCDECARE 185

Query: 179 PAEILHGDMVQPLRVKVDRE 198
            +E     +++P    +D +
Sbjct: 186 KSERNLKKILRPFEGTIDEK 205


>UniRef50_A9B2V8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Herpetosiphon aurantiacus ATCC 23779
           RepID=A9B2V8_HERA2
          Length = 124

 Score = 50.8 bits (120), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 47/136 (34%), Gaps = 21/136 (15%)

Query: 38  AYVYRVDCGGCNGCEIEI----FATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             VY ++ G      IE+     A  S         +    +P HADI + TG +   +R
Sbjct: 2   IAVYHLNAGSTG---IEVRILAEAIRSAR------NLTWAATPAHADIFVLTGPIPLLLR 52

Query: 94  SPALRAW-QSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI--VPVDVYIPGCPPTPA 150
                 W     D    I+ G     G  F       GG  ++  + V   I G PPT A
Sbjct: 53  PALSNVWRDFIADRAPLIALGRASIDGHPFG-----RGGLAELPEIQVAAKIDGDPPTVA 107

Query: 151 ATLYGFAMALGLLEQK 166
           A   G   AL     K
Sbjct: 108 AIQAGIVQALNARTAK 123


>UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=Methanococcus
           RepID=FRHG_METVO
          Length = 243

 Score = 50.8 bits (120), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 42/161 (26%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFG------------------------IKVV 73
             +  +   GC GC I +  T   L D    G                        +   
Sbjct: 2   VKIAHIHMSGCTGCLISLTDTYEKLLDI--LGSVELVYALTLTGEKTEITETDDKILIER 59

Query: 74  PSPRHADILLFTGAVT----RAMRSPALRAWQSAPDPKICISYGACGNSGGIFH------ 123
             P   DI L  G+V      +M              K  ++ GAC  SGG+        
Sbjct: 60  DIPGGIDIALVEGSVCLDDHHSMDDILTTRKN---SKKSLVALGACAASGGVTRFRRVGQ 116

Query: 124 ---DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
                +  +     ++ VD+ +PGCPP+  + +     AL 
Sbjct: 117 MSQPSHASFVPIGDVIKVDLALPGCPPSTESIVKLLTAALE 157


>UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subunit n=2
           Tax=Methanopyrus kandleri RepID=Q8TYW2_METKA
          Length = 305

 Score = 50.4 bits (119), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 53/186 (28%), Gaps = 46/186 (24%)

Query: 46  GGCNGCEIEIFATLSPLFDA--ERFGIKV-------VPSPRHADILLFTGAVTRAMRSPA 96
             C GC + +      L D   +   I+           P H ++ +  G++        
Sbjct: 12  SSCVGCHVSLLDLHEKLLDLLEDAIEIEYCYVLVDQKEIPEHVNVAVIEGSI--RNEEDL 69

Query: 97  LRAWQSAPDPKICISYGACGNSGG----------------IFHDLYCV------------ 128
             A +      I ++ G C   GG                +F +                
Sbjct: 70  EVAEELREAADIVVAVGTCACYGGVHGLANLYQLDDILEWVFKETPTTDDEGETPEEVVP 129

Query: 129 -----WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEIL 183
                     +++ VD  +PGCPP P +        L   E ++        +E P E  
Sbjct: 130 ELFGYVRPLPEVIDVDYMLPGCPPKPESIAEVITAILEDREPELPTTNL--CEECPREKE 187

Query: 184 HGDMVQ 189
              + +
Sbjct: 188 DIPIEE 193


>UniRef50_Q85WY3 ORF82a n=1 Tax=Pinus koraiensis RepID=Q85WY3_PINKO
          Length = 82

 Score = 50.0 bits (118), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 115 CGNSGGIFH-------DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
           C   G +++       D Y      DK++PVDVY P CP  P   +         
Sbjct: 21  CSCPGSMYYHIEMFGTDSYSTVHEVDKLIPVDVYSPDCPTEPEVIIDAITKLRER 75


>UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Methanopyrus kandleri RepID=Q8TXX1_METKA
          Length = 238

 Score = 50.0 bits (118), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 19/118 (16%)

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH--------DLYC-VW 129
           ADIL   GAV  A      +  ++A      +S G+C  +GG           D Y    
Sbjct: 43  ADILFVEGAVDFADAETLEKLEEAASAVSTVVSLGSCAATGGFERHVIGMRDPDRYHFTV 102

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM 187
               K V  D  I GCPPT    +  F  AL             E + +P E+L GD 
Sbjct: 103 FPAAKFVETDYAINGCPPT-TDVIASFLRAL---------EEENEDELRPYEVLSGDF 150


>UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=4
           Tax=Proteobacteria RepID=Q21RP8_RHOFD
          Length = 188

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 44/166 (26%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP----RH---ADILLFTGAV 88
           R   V  V   GC GC +        LFD     I+   SP    +     DI L  G +
Sbjct: 11  RKLKVATVSLAGCFGCHMSFLDIDERLFDLIEH-IEFDRSPLTDIKQVGACDIGLIEGGL 69

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGG------------IFHDLYCVWGG----- 131
             A     LR +++    K  ++ GAC  +GG            +  ++Y    G     
Sbjct: 70  CNAENVQVLREFRAH--CKTLVAVGACAITGGLPAQRNHLDLGQLLTEVYRSRPGLSAGG 127

Query: 132 -----------TDKIVPV------DVYIPGCPPTPAATLYGFAMAL 160
                       +K+ P+      D  +PGCPP+  A  +  +  +
Sbjct: 128 AIPNDPELPLLLNKVHPIREVVHVDYSLPGCPPSADAFWHFLSDLM 173


>UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Nautilia
           profundicola AmH RepID=B9L8N0_NAUPA
          Length = 288

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 20/104 (19%)

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAP-----DPKICISYGACGNSGGIFHDL--YCVW 129
           +  D+L+  GA+ +        +            K  ++ G C   GG+F +   Y   
Sbjct: 51  KQCDLLIVEGAL-KNNYPRLGYSLNELISKLFFKAKKVLALGTCAVYGGMFGEGLMYNKE 109

Query: 130 GGT------DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                    DKI+     +PGCPP P      F + +    +KI
Sbjct: 110 QKGHYYKCRDKII----NLPGCPPHPDWI--AFVLDMISENKKI 147


>UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n=46 Tax=Bacteria
           RepID=Q3M430_ANAVT
          Length = 181

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 44/156 (28%), Gaps = 43/156 (27%)

Query: 46  GGCNGCEIEIFATLSPLFDAERFG---IKVVPS----PRHADILLFTGAVTRAMRSPALR 98
           GGC+GC +        L D                  P   D++L  GA+          
Sbjct: 12  GGCSGCHMSFLDLDEWLIDLAAQADVVFSPFADIKEYPEGVDVVLVEGAIAN--EEHLTT 69

Query: 99  AWQSAPDPKICISYGACGNSG----------------------------------GIFHD 124
                   +I IS+G C  +G                                  GI   
Sbjct: 70  IKIVRERSQILISFGDCAVTGNVTALRNPLGSAEPVLQRCYIQAVDINPQIPQEPGIVPP 129

Query: 125 LYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
           L         IVPVD+Y+PGCPP+           L
Sbjct: 130 LLDRVTPVHSIVPVDIYLPGCPPSATRIRAALEPLL 165


>UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Tax=Bacteria
           RepID=Q2LYD8_SYNAS
          Length = 253

 Score = 47.7 bits (112), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 35/153 (22%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH---------ADI 81
           ++++     V   D   C GC++++      L D    G   V   R           D+
Sbjct: 1   MERMLMKPKVAFFDFACCEGCQLQVANLGEALLDI--LGAIDVVEFREVMSEKWDKNYDV 58

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG----------------IFHDL 125
            +  G++T       +R  +      + I+YG+C   GG                ++   
Sbjct: 59  AIVEGSITDEHAEQRIRKIRDRSA--VLIAYGSCATIGGVNGMKNSFVLDEIRQSVYGKD 116

Query: 126 YCV-----WGGTDKIVPVDVYIPGCPP-TPAAT 152
           Y +          ++V VD +I GCP   P   
Sbjct: 117 YQLFDSKKTRPIHQVVKVDYFINGCPVYHPEVI 149


>UniRef50_A7IHL6 Ni Fe-hydrogenase III large subunit-like protein n=4
           Tax=Proteobacteria RepID=A7IHL6_XANP2
          Length = 110

 Score = 47.3 bits (111), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGA 114
            L+   D  R G+     PR A++LL    +   M   A  A+   P P+  +  G 
Sbjct: 41  ALAAGLDLSRAGLTEADGPRQANVLLVMLPLPAPMLKAATVAYAQMPRPRTVLVLGE 97


>UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomiragia
           RepID=C6YT65_9GAMM
          Length = 268

 Score = 47.0 bits (110), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 32/113 (28%), Gaps = 31/113 (27%)

Query: 80  DILLFTGAV-TRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------- 121
           DI    G+V T        +  +     K  I+ GAC  +GGI                 
Sbjct: 63  DIAFIEGSVNTHHDIPRLQKIRE---KAKYVIAIGACAVAGGIQALRNYTNAAELLEWQK 119

Query: 122 ----------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
                       +         + V VD  I GCP T    L      L  +E
Sbjct: 120 AVYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQILKAIRQLLFGVE 172


>UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=D2REQ3_ARCPR
          Length = 321

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 51/175 (29%), Gaps = 67/175 (38%)

Query: 46  GGCNGCEIEIFATLSPLFD-AERFGIKV-------------VPSPRHA-DILLFTGAVTR 90
           GGC GC++ +      L D  E   I                  P  + D+ L +G V  
Sbjct: 11  GGCGGCDMAVVDLSEKLVDALEHLEIVFWAPTVADVKYKDLEAMPDQSIDLGLISGMVRN 70

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLY------------ 126
                 ++  +     KI +++G C   GGI            F + Y            
Sbjct: 71  KENEHLVKVMRQ--KCKIIVAFGICAALGGIPGMANMHKNEELFENAYIKSPSTDNPNNV 128

Query: 127 -------------------CVWGGTDKIVPVDVYIPGCPPT-------PAATLYG 155
                                    D+++ VD Y+ GCPP          A + G
Sbjct: 129 IPQPVSKEGEFELTLPEFLDRVKPIDEVIEVDYYVGGCPPHHDHVAKVVEAVITG 183


>UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit FrhG n=1
           Tax=Methanobrevibacter ruminantium M1
           RepID=UPI0001C420D3
          Length = 319

 Score = 46.6 bits (109), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN---------SGGIFHDLYCVWG 130
           D+ L  G+V            +      +  ++G+C            G +    +  + 
Sbjct: 141 DLALVEGSVCLQDEHSVKELMEVREKAGLVCAFGSCAMTGCFTRYARGGQLAQPKHESFV 200

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
               +V VD  IPGCP +P   +    +AL
Sbjct: 201 PISDLVKVDCAIPGCPASPE-IIAKVVVAL 229


>UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small subunit n=5
           Tax=Dehalococcoides RepID=D2BHA4_DEHSV
          Length = 312

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 54/166 (32%), Gaps = 57/166 (34%)

Query: 48  CNGCEIEIFATLSPLFDA--------------ERF------GIKVVPSPRHADILLFTGA 87
           C GCE+ I     PL D                +       GIK    P  AD+ + TG 
Sbjct: 12  CGGCELSILDIGEPLLDVLPNLKIVHMPVLMDHKLLGQKGDGIKY-EIP-EADLGIITGG 69

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLYCVWGG---- 131
           +          A +     K+ ++ G C   GGI               ++    G    
Sbjct: 70  I--RNEENRELALEMRKKCKLIVALGTCACFGGIPALANLSTTEDMLKQVFSKEKGTDPA 127

Query: 132 -----------------TDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                             D+I+ VD+++PGCPPTPA  +      L
Sbjct: 128 SPPGDKSLPKMLDRVYAVDEIITVDIHLPGCPPTPAHIVELLTAVL 173


>UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermococcus sibiricus MM
           739 RepID=C6A155_THESM
          Length = 267

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 23/105 (21%)

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHD 124
           +  DI    G+V+           +     KI I+ G+C   GG+            +  
Sbjct: 57  KEVDIAFIEGSVSTQ--EEVELVKKIREKAKIVIAVGSCAVHGGVQSWDKDKEFNELWKT 114

Query: 125 LYC---------VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
           +Y          +    +K + VD  + GCPP     LY     L
Sbjct: 115 VYGDAHVKFEPKMAEPVEKYIKVDYKLYGCPPEKKDFLYALGTLL 159


>UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermococcaceae
           RepID=B6YSK0_THEON
          Length = 246

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 41/126 (32%), Gaps = 29/126 (23%)

Query: 48  CNGCEIEIFATLSPLFDAERF----GIKVVPS---PRHADILLFTGAVTRAMRSPALRAW 100
           C GC + I      LFD   F       +  S     H D+ L TG V+       L+  
Sbjct: 15  CGGCALNILFLYEKLFDLLEFYEITEFHMATSLSEGSHYDVALVTGTVSSQRDLALLK-- 72

Query: 101 QSAPDPKICISYGACGNSG---------------GIFHDLYCVWGGTD-----KIVPVDV 140
           ++       I+ G C   G                ++ D        D     + V VD 
Sbjct: 73  EARNHSDYLIALGTCATHGSVQASVEGSIREKLKRVYGDEGNPMRALDSKPVVEYVAVDF 132

Query: 141 YIPGCP 146
            +PGCP
Sbjct: 133 ALPGCP 138


>UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria RepID=A1SU83_PSYIN
          Length = 433

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 64/194 (32%), Gaps = 57/194 (29%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPSPR--------HADILLFT 85
           K+   +      GC GC +        L +  ER  +++  SP           D+ L  
Sbjct: 255 KKKLKLATCSLAGCFGCHMSFLDMDERLIELLER--VELSRSPLNDIKTCAPDCDLGLIE 312

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLYCVW 129
           GAV        LR ++     KI I+ G+C  +GG+                + +   + 
Sbjct: 313 GAVCNTENIAVLRHFRE--SCKIIIAVGSCAINGGVPSLRNNIDVKDCLDEAYLNGIGLV 370

Query: 130 G-----------------GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
                                +++ VD ++PGCPP   A        L            
Sbjct: 371 NPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPADAFWKILNDLLD----------- 419

Query: 173 GELDEQPAEILHGD 186
           G+  E P ++LH D
Sbjct: 420 GKEPELPYDLLHFD 433


>UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=10
           Tax=Chlorobiaceae RepID=B4SFA2_PELPB
          Length = 258

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 27/134 (20%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVP--SPRH---ADILLFTGAVTRA 91
             +   D   C GC++++    S L D      I+     S       DI L  G+++R 
Sbjct: 15  LKIASFDFTCCEGCQLQLANRESTLADFLNLLDIRNFRELSSEQHDDYDIALIEGSISRQ 74

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDKIVP------------ 137
                 R  +     KI +++G C   GGI    + +      D + P            
Sbjct: 75  --DEVERLLKIRQQAKILVAFGTCACFGGINSLKNRFPAREMIDAVYPGMPIETLPVRKI 132

Query: 138 -----VDVYIPGCP 146
                VD+ IPGCP
Sbjct: 133 SDVVKVDLSIPGCP 146


>UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n=7
           Tax=Deltaproteobacteria RepID=A0LP54_SYNFM
          Length = 324

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 54/197 (27%), Gaps = 67/197 (34%)

Query: 46  GGCNGCEIEIFATLSPL---------------FDAERFGIK----VVPSPRHADILLFTG 86
             C GCEI +                      FD + FG       +  P  ADI + +G
Sbjct: 11  SSCAGCEISMLNMGGLFLELLKEIRIVHMPLLFDHKYFGQAGEENFIGIP-EADIGIVSG 69

Query: 87  AV-TRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLYCVWG--- 130
            +        AL+        +I ++ G C   GGI            F   Y       
Sbjct: 70  GIRNEEQLEVALKVRAQC---RILVALGTCATHGGIPALMNRYSDEDLFRRYYRTSETTE 126

Query: 131 -----------------GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
                              D+   VDVY+ GCPP P      F   L            G
Sbjct: 127 AAAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPDYLGAMFRTLLD-----------G 175

Query: 174 ELDEQPAEILHGDMVQP 190
           +  E P + +       
Sbjct: 176 QWPEMPTKSVCDTCPTR 192


>UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subunit, FrhG n=3
           Tax=Methanobacteriaceae RepID=A5UM99_METS3
          Length = 276

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 13/92 (14%)

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--------- 130
           D+ L  G+V            ++     +  ++G+C  +G      Y   G         
Sbjct: 98  DLCLIEGSVCLQDEHSVHELLEAREKSALICAFGSCALNGCF--TTYARGGQQAQPKHES 155

Query: 131 --GTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                 +V VDV +PGCP  P           
Sbjct: 156 FLPISSLVKVDVALPGCPVAPEMIAKTVVALC 187


>UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquificaceae
           RepID=A7BI79_HYDTH
          Length = 345

 Score = 44.6 bits (104), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 26/146 (17%)

Query: 81  ILLFTGAVTRAMRSP---------ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG- 130
           IL+  G+V+   +                ++A +  + I+ G+C + GGI H      G 
Sbjct: 114 ILIVEGSVSPRNKGVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGA 173

Query: 131 -GTDKIV--PVDVYIPGCPPTPA---ATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
               +I+     V IPGCPP      A + GF          I  + P        +  +
Sbjct: 174 VPVSQILGDRQVVNIPGCPPISDVMVAVIAGFV---------ITGKPPELDSMGRPKTFY 224

Query: 185 GD-MVQPLRVKVDREARRLAGYRYGR 209
           G  +      +    A +LAG     
Sbjct: 225 GQTIHDRCYRRPFYNAGKLAGSFDDE 250


>UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=Methanocella
           paludicola SANAE RepID=D1Z1F3_METPS
          Length = 235

 Score = 44.6 bits (104), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 16/124 (12%)

Query: 42  RVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPSPRHA------DILLFTGAVTRAMRS 94
            V    C+GCEI        L D  +   I+ +   + A      DI+   GA       
Sbjct: 8   YVHLAACSGCEISFLDNFERLLDMMDMVDIEYMTLIKDATDIPKVDIVFVDGAACLQSED 67

Query: 95  PALRAWQSAPDPKICISYGACGN---------SGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
                 ++  +    +++G C +          G +    +  +    ++V VD  +PG 
Sbjct: 68  AVETLKKARENATYLVAWGGCSSTATINNFSRGGQLPQPQHESFPPIKRLVKVDASVPGS 127

Query: 146 PPTP 149
           PP P
Sbjct: 128 PPGP 131


>UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1U6F3_9DELT
          Length = 328

 Score = 44.3 bits (103), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 110 ISYGACGNSGGIFH--DLYCVWGGTDKIVPVD--VYIPGCPPTPAATLYGFA 157
           I+YG C + GG+           G D++ P    + +PGCPP P + +    
Sbjct: 164 ITYGTCASYGGVQKAAPNPTACKGVDELFPGKPIINVPGCPPNPYSLVGTIV 215


>UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound
           hydrogenase small subunit)
           (Hydrogen:quinoneoxidoreductase) n=3 Tax=Bacteria
           RepID=C1DUF2_SULAA
          Length = 416

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 16/88 (18%)

Query: 81  ILLFTGAVTRAMRSP----------ALRAWQSAPDPKICISYGACGNSGGI---FHDLYC 127
           +L   G++   M               R  + A D K  I+ GAC + GG+   + +   
Sbjct: 166 LLFVEGSIPVKMEYAFTTGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTG 225

Query: 128 VWGGTDKI--VPVDVYIPGCPPTPAATL 153
             G  D +  VPV V IP CP  P   +
Sbjct: 226 AVGVMDVVSGVPV-VNIPACPANPVNIV 252


>UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Tax=Thermococcaceae
           RepID=B6YU80_THEON
          Length = 265

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 23/98 (23%)

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FH 123
           DI    G+V+           +   + KI ++ GAC   GG+                + 
Sbjct: 54  DIAFIEGSVS--TEEEVELVKKIRENAKIVVAVGACATQGGVQSWEKDKSLEELWKAVYG 111

Query: 124 DL-----YCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
           D        +    +  + VD  I GCPP     +Y  
Sbjct: 112 DGKVKFEPKMAEPLENYIKVDYRIYGCPPEKKDFIYAI 149


>UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=uncultured methanogenic archaeon RC-I
           RepID=Q0W2X8_UNCMA
          Length = 232

 Score = 43.9 bits (102), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 16/125 (12%)

Query: 42  RVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPSPRHA------DILLFTGAVTRAMRS 94
            V    C+GCEI        + D  +   I  +     A      D+L   GA     + 
Sbjct: 8   YVHLAACSGCEISFLDNFERVLDMMDMVDIDYMTLIADATEIPKVDLLFVDGAACLQSKE 67

Query: 95  PALRAWQSAPDPKICISYGACGN---------SGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
                 ++  +    +++G C +          G      +  +    ++V VD ++PG 
Sbjct: 68  SVESLKKARENTGFLVAWGGCSSTATINNFSRGGQSPQPQHESFPQISRLVKVDAFVPGS 127

Query: 146 PPTPA 150
           PP P 
Sbjct: 128 PPGPE 132


>UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Desulfitobacterium
           hafniense RepID=B8FWY3_DESHD
          Length = 375

 Score = 43.5 bits (101), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 105 DPKICISYGACGNSGGIF--HDLYCVWGGTDKIVPVD--VYIPGCPPTPAATLYGFAMA 159
             K  ++ G C   GG    +       G   I+P    + + GCP  P   +      
Sbjct: 143 KAKYVVAVGHCATYGGPVAGYPNPTQSTGVQNILPERRVINVSGCPAHPDWIMGTLLHL 201


>UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1
           Tax=Sulfurihydrogenibium azorense Az-Fu1
           RepID=C1DUT4_SULAA
          Length = 249

 Score = 43.5 bits (101), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 29/129 (22%)

Query: 45  CGGCNGCEIEIFATLSPLFDAERFGIKV------VPSPRHADILLFTGAVTRAMRSPALR 98
              C+GC++        L + E F I        V +  + D     G+V+        R
Sbjct: 8   FSSCDGCQLSFINLSGELAELENFSIDYFLEGQSVNNYEYFDFSFVEGSVS--TTEEIER 65

Query: 99  AWQSAPDPKICISYGACGNSGGI-----FHDL------YCVWG----------GTDKIVP 137
                   K+ +  GAC  SGG+     F ++      Y                 ++V 
Sbjct: 66  IKDIRERSKVLVGIGACAVSGGVQSIRNFRNIDDIKTVYNTVDITKNVLENALPISQVVK 125

Query: 138 VDVYIPGCP 146
           VD  I GCP
Sbjct: 126 VDFEIRGCP 134


>UniRef50_Q1AZS0 Ni Fe-hydrogenase III large subunit-like protein n=1
           Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZS0_RUBXD
          Length = 540

 Score = 42.7 bits (99), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 64  DAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGA 114
           D E  G+ +   PRHA +LL  G +  A+R  A   +     P+  ++ GA
Sbjct: 42  DVEAAGLGMTGVPRHASVLLVVGELPAALRRAAAVVYAQMMRPRAVLAAGA 92


>UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH
          Length = 330

 Score = 41.9 bits (97), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 29/91 (31%), Gaps = 5/91 (5%)

Query: 101 QSAPDPKICISYGACGNSGGI--FHDLYCVWGGT-DKIVPVDVYIPGCPPTPAATLYGFA 157
              P   + I+ G C   GGI         + G  D I    + I GCPP P   L    
Sbjct: 165 DVIPKAAVTIALGTCAAYGGIPSAAPNPGGYKGVKDAIGVATINISGCPPNPLNLLSTIV 224

Query: 158 MALGLLEQKIHARGPGELDEQPAEILHGDMV 188
             L    + I     G      AE +H    
Sbjct: 225 KYLNK--ETIELDELGRPLFAYAETVHDRCP 253


>UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria RepID=Q59113_9BACT
          Length = 179

 Score = 41.6 bits (96), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 44/165 (26%)

Query: 47  GCNGCEIEIFATLSPLFDAERFGIKVVPSP-------RHADILLFTGAVTRAMRSPALRA 99
            C GC +        L D  +  ++++ SP        + D+ + +G +          A
Sbjct: 13  ACAGCHMSFLDLDERLIDLFQ-NVEILFSPIVDAKDIPNIDVGVLSGGLGN--VEEVELA 69

Query: 100 WQSAPDPKICISYGACGNSGGI----------------FHDLYCVWG------------- 130
            +     K  +++G C   GGI                + +                   
Sbjct: 70  KKMRERCKYLVAWGDCAVFGGINCMRNFIPKDVVLREGYIETASTVNPQGIVPSEDIPEL 129

Query: 131 -----GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                  D  V VDVY+PGCPP      Y F   L     K+ + 
Sbjct: 130 LPRALPIDYEVKVDVYVPGCPPDADTIYYVFKELLAGRVPKVPSE 174


>UniRef50_A9E0C1 Putative uncharacterized protein n=1 Tax=Oceanibulbus indolifex
           HEL-45 RepID=A9E0C1_9RHOB
          Length = 340

 Score = 41.6 bits (96), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPK 107
           G++VV +PR A +LL  G +  A+     R     P P+
Sbjct: 36  GLRVVETPRAAAVLLVVGTIPEALIPQLHRLHDQLPHPR 74


>UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=63
           Tax=Proteobacteria RepID=PHNS_DESDA
          Length = 315

 Score = 41.6 bits (96), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 8/89 (8%)

Query: 103 APDPKICISYGACGNSGGI--FHDLYCVWGGTDKIVP----VDVYIPGCPPTPAATLYGF 156
            P  K  +S G C   GGI           G +          + +PGCPP P   +   
Sbjct: 151 LPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKAINVPGCPPNPLNMVGTL 210

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHG 185
              L    QKI     G       + +H 
Sbjct: 211 VAFLK--GQKIELDEVGRPVMFFGQSVHD 237


>UniRef50_Q0FXV5 Putative uncharacterized protein n=1 Tax=Fulvimarina pelagi
           HTCC2506 RepID=Q0FXV5_9RHIZ
          Length = 391

 Score = 41.2 bits (95), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110
           F+  RF      SPRHA I L  G +    R    R     P P++ +
Sbjct: 19  FNDARF--VRAASPRHAAIFLIAGRMRLEDREDLRRLHDQMPHPRVTL 64


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacter...   313   2e-84
UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bac...   263   4e-69
UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5        257   2e-67
UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobac...   252   1e-65
UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen l...   232   1e-59
UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   219   6e-56
UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   216   8e-55
UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen l...   215   1e-54
UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=B...   214   3e-54
UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   208   1e-52
UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase sma...   206   4e-52
UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   202   9e-51
UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=...   201   3e-50
UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=P...   200   4e-50
UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=c...   199   6e-50
UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 T...   199   6e-50
UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=c...   199   8e-50
UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=T...   198   1e-49
UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=B...   198   1e-49
UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   197   2e-49
UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   197   2e-49
UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=...   197   4e-49
UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   196   5e-49
UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Ta...   196   7e-49
UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax...   196   9e-49
UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID...   195   1e-48
UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-li...   195   1e-48
UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   195   1e-48
UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   194   3e-48
UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteob...   193   4e-48
UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyce...   193   4e-48
UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=...   193   5e-48
UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   193   6e-48
UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   192   7e-48
UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   192   1e-47
UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=F...   192   1e-47
UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=...   191   2e-47
UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   191   2e-47
UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   191   2e-47
UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   190   3e-47
UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemm...   189   7e-47
UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 ...   189   8e-47
UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=p...   189   9e-47
UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   188   1e-46
UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax...   188   1e-46
UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=...   188   1e-46
UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...   187   3e-46
UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydr...   187   3e-46
UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   187   4e-46
UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometr...   186   7e-46
UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=...   186   7e-46
UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=De...   186   7e-46
UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   186   9e-46
UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   185   1e-45
UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   185   1e-45
UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=c...   184   3e-45
UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=P...   184   3e-45
UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ...   184   3e-45
UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=c...   183   4e-45
UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collins...   183   5e-45
UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   183   5e-45
UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 T...   183   6e-45
UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax...   182   7e-45
UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd s...   182   8e-45
UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collins...   182   1e-44
UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   181   2e-44
UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=...   180   3e-44
UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=S...   179   6e-44
UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   179   6e-44
UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...   179   7e-44
UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea R...   179   8e-44
UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=c...   179   9e-44
UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria...   179   9e-44
UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=T...   179   1e-43
UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=...   177   2e-43
UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=...   177   3e-43
UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=N...   176   5e-43
UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cy...   176   5e-43
UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=D...   176   6e-43
UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=...   176   7e-43
UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   176   8e-43
UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...   175   1e-42
UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   175   1e-42
UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   175   2e-42
UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...   174   2e-42
UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   174   2e-42
UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   174   2e-42
UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=F...   174   2e-42
UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Ta...   174   3e-42
UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Pr...   174   3e-42
UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=...   174   3e-42
UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   172   7e-42
UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=...   171   2e-41
UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit ...   170   4e-41
UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteri...   170   5e-41
UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   169   1e-40
UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarch...   169   1e-40
UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfit...   169   1e-40
UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=F...   168   1e-40
UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea Rep...   167   3e-40
UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Ep...   167   4e-40
UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (Mbx...   165   1e-39
UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   163   4e-39
UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 ...   163   5e-39
UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japoni...   161   2e-38
UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=...   161   2e-38
UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q...   160   3e-38
UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ...   160   3e-38
UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   160   5e-38
UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=S...   159   6e-38
UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=T...   157   3e-37
UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   156   6e-37
UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   156   7e-37
UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   155   1e-36
UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospiri...   154   2e-36
UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   154   3e-36
UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=...   153   7e-36
UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meio...   152   8e-36
UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A...   152   1e-35
UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermopl...   151   2e-35
UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   150   5e-35
UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   150   5e-35
UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarch...   149   6e-35
UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   149   6e-35
UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulf...   149   1e-34
UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   147   4e-34
UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   147   4e-34
UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   145   1e-33
UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=I...   144   3e-33
UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   142   1e-32
UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN    140   3e-32
UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophi...   139   8e-32
UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shige...   137   4e-31
UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   136   6e-31
UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulib...   136   8e-31
UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit fa...   135   2e-30
UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Glucono...   129   8e-29
UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   126   6e-28
UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxi...   124   3e-27
UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax...   120   4e-26
UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax...   119   1e-25
UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanoca...   114   4e-24
UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetom...   112   9e-24
UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, puta...   109   9e-23
UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteria...   107   3e-22
UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=...   100   3e-20
UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n...   100   4e-20
UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax...    98   3e-19
UniRef50_C1GND6 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...    97   4e-19
UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota ...    96   2e-18
UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13...    95   2e-18
UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=G...    89   2e-16
UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subuni...    89   2e-16
UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    88   2e-16
UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    88   3e-16
UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 ...    87   4e-16
UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl v...    87   7e-16
UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria R...    86   8e-16
UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=...    85   2e-15
UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    85   3e-15
UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    84   7e-15
UniRef50_Q6A6I9 NADH dehydrogenase subunit n=2 Tax=Propionibacte...    82   2e-14
UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    79   1e-13
UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Ta...    79   1e-13
UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 ...    77   6e-13
UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subuni...    76   9e-13
UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    75   2e-12
UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit F...    74   6e-12
UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    73   8e-12
UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small sub...    73   9e-12
UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subuni...    72   2e-11
UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    71   4e-11
UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomirag...    70   6e-11
UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    70   7e-11
UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermo...    70   7e-11
UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermoco...    70   8e-11
UniRef50_C7J5D7 Os07g0116900 protein n=3 Tax=Oryza sativa RepID=...    69   1e-10
UniRef50_A9B2V8 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    69   2e-10
UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Co...    65   2e-09
UniRef50_Q85WY3 ORF82a n=1 Tax=Pinus koraiensis RepID=Q85WY3_PINKO     57   5e-07
UniRef50_A7IHL6 Ni Fe-hydrogenase III large subunit-like protein...    53   1e-05
UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 ...    48   2e-04

Sequences not found previously or not previously below threshold:

UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax...    73   1e-11
UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria ...    72   2e-11
UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silv...    67   4e-10
UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=...    66   1e-09
UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gam...    66   1e-09
UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subuni...    65   2e-09
UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    65   2e-09
UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    65   2e-09
UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=...    64   5e-09
UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    64   5e-09
UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    63   1e-08
UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 T...    62   1e-08
UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    62   3e-08
UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    61   3e-08
UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI         61   3e-08
UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subuni...    60   8e-08
UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Ta...    59   2e-07
UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=...    59   2e-07
UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH    58   3e-07
UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehaloc...    57   5e-07
UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clost...    57   6e-07
UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    56   1e-06
UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    56   1e-06
UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=6...    56   1e-06
UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    56   1e-06
UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subuni...    55   2e-06
UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hy...    55   2e-06
UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=De...    55   2e-06
UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, sma...    54   4e-06
UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    54   6e-06
UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    54   7e-06
UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 ...    53   8e-06
UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (...    53   8e-06
UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n...    53   8e-06
UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    53   9e-06
UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subuni...    53   1e-05
UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    52   1e-05
UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl v...    52   1e-05
UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteoba...    52   2e-05
UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n...    52   2e-05
UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit fa...    52   2e-05
UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes Re...    52   2e-05
UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquifica...    51   3e-05
UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 T...    51   4e-05
UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    50   5e-05
UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    50   5e-05
UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH Re...    50   6e-05
UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Ta...    50   6e-05
UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    50   7e-05
UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...    50   7e-05
UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helic...    50   9e-05
UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylo...    49   1e-04
UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfit...    49   2e-04
UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Ep...    49   2e-04
UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    48   3e-04
UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...    48   4e-04
UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacte...    48   4e-04
UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=...    47   6e-04
UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Ar...    47   7e-04
UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteri...    47   8e-04
UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria Re...    46   0.001
UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicob...    46   0.001
UniRef50_Q0FXV5 Putative uncharacterized protein n=1 Tax=Fulvima...    46   0.001
UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteoba...    46   0.001
UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...    46   0.001
UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    46   0.001
UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2...    46   0.001
UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    46   0.002

>UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacteria RepID=HYCG_ECOLI
          Length = 255

 Score =  313 bits (803), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS
Sbjct: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG
Sbjct: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120

Query: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA
Sbjct: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180

Query: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240
           EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE
Sbjct: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240

Query: 241 IVSHLNHVVEEARIR 255
           IVSHLNHVVEEARIR
Sbjct: 241 IVSHLNHVVEEARIR 255


>UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bacteria
           RepID=C7MLM8_CRYCD
          Length = 283

 Score =  263 bits (672), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 146/239 (61%), Positives = 183/239 (76%), Gaps = 4/239 (1%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            P  +D+ IA  KA+LL  IKRS Y+YRVDCGGCNGCEIEIF TL+P+FDAERFGIK + 
Sbjct: 36  EPKVLDQKIAEAKAALLNDIKRSVYIYRVDCGGCNGCEIEIFGTLTPVFDAERFGIKNMA 95

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SPRHADIL++TGAVTRAMR PALRA+++APDPK+ +SYGACG +GGIFHD YCVWGGTDK
Sbjct: 96  SPRHADILVYTGAVTRAMRLPALRAYEAAPDPKLIVSYGACGCTGGIFHDNYCVWGGTDK 155

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK 194
           + PVDVYIPGCPP+PA T+YGFAMALGLL QK+H +   E + + A I+  D+   LR +
Sbjct: 156 LFPVDVYIPGCPPSPAQTIYGFAMALGLLGQKLHEKHLVEGEGEQAPIMFADIPYKLRCE 215

Query: 195 VDREARRLAGYRYGRQIADDYLTQL----GQGEEQVARWLEAENDPRLNEIVSHLNHVV 249
           ++REARR+AGY YGR + D ++  L    G+    V   +EAE+DPR  EI + L  ++
Sbjct: 216 LEREARRMAGYVYGRDLVDTFMQALEPEDGKVLTSVDALIEAESDPRKVEIYADLKQIL 274


>UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5
          Length = 274

 Score =  257 bits (657), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/247 (44%), Positives = 156/247 (63%), Gaps = 11/247 (4%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
           +P  +     + +    L K IKRS  VYR+DCG CNGCEIEIFA ++P++D ERFG K+
Sbjct: 6   VPQDIKTANDLTAKLEHL-KNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKL 64

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
           V +PRHADIL+ +G VTR M  P LRA+++APDPKI +++GACG+SGGIFHD Y VWGG 
Sbjct: 65  VANPRHADILICSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSSGGIFHDAYSVWGGI 124

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ-PL 191
           DKI+PVDVYIPGCPP PA+ +YG  MALG+++QK+H +   +    P  +    +     
Sbjct: 125 DKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQKLHKKSYEDDSTLPPPVEKSVIGDILF 184

Query: 192 RVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVAR---------WLEAENDPRLNEIV 242
              +  E++RL  Y +GR + D Y++ +    +              ++ E DPR  E +
Sbjct: 185 ERDLQAESKRLMSYIFGRALFDKYMSAIKTASDVHDPNSARTAMLEAIKKEEDPRYAECM 244

Query: 243 SHLNHVV 249
           + L++ V
Sbjct: 245 ALLHNDV 251


>UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobacteria
           RepID=C6ANV6_AGGAN
          Length = 258

 Score =  252 bits (643), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 156/251 (62%), Positives = 196/251 (78%), Gaps = 5/251 (1%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           N   P   NGI  P ++DE+IA MK +LLK I+RSAYVYRVDCGGCNGCEIEIF+T++P+
Sbjct: 2   NTQIPMPVNGISTPFSIDENIAKMKQALLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPV 61

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           FDAERFGIKVV SPRHADILLFTG+VTRAMR+PA+RA+Q+APDPKICI+YGACG  GGIF
Sbjct: 62  FDAERFGIKVVASPRHADILLFTGSVTRAMRTPAMRAYQAAPDPKICIAYGACGCGGGIF 121

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           HDLYCVWGG+D+IVPVDVYIPGCPPTPAAT+YGFAMALGLL+QK+  +         A++
Sbjct: 122 HDLYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLKGKQEKADPNAEAKL 181

Query: 183 LHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQV-----ARWLEAENDPR 237
               +   LR+ ++REARRLAGYR G  IA+ ++  + + ++         +LE E DPR
Sbjct: 182 RFPTIPLDLRISLEREARRLAGYRQGGNIANQFMAMMSEDDKVPFGVRLGEYLEREADPR 241

Query: 238 LNEIVSHLNHV 248
           L+EI++ L+ +
Sbjct: 242 LSEIINRLHAI 252


>UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=3
           Tax=cellular organisms RepID=B6YT72_THEON
          Length = 266

 Score =  232 bits (591), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 26/239 (10%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S +V+ VD G CNGC+IEI   L+P +DAER GIK+VPSPRHAD LL +G +TR     
Sbjct: 5   KSVWVFHVDSGSCNGCDIEILDVLTPYYDAERLGIKLVPSPRHADALLVSGPLTRQTYYA 64

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV-------------WGGTDKIV----- 136
              A+++  P P+I ++ G C +SGGIF++ Y +              GG + ++     
Sbjct: 65  VKAAYEAMPPKPRIVVAIGTCASSGGIFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGK 124

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD 196
             D+YIPGCPP+P   LYG A  LGL E+K+         E    +    + + + + + 
Sbjct: 125 KPDMYIPGCPPSPEEILYGLAQLLGLKEKKMKGEYYYAD-EIEFVLPERPIEERIYLTLR 183

Query: 197 REARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
              RR+ GY    ++ +D++  + + +E            RL+E+V       +++R++
Sbjct: 184 ESLRRVVGYFDREKVLEDFMALVEKAQESENP------RERLHELVIGYFLREKDSRVK 236


>UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=638 Tax=cellular organisms
           RepID=NDUS7_HUMAN
          Length = 213

 Score =  219 bits (558), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           +    P+     P P +  E + +    L+   +RS  ++ +  G    C +E+    +P
Sbjct: 42  TQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMHMAAP 99

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +D +RFG+    SPR +D+++  G +T  M     + +   P+P+  +S G+C N GG 
Sbjct: 100 RYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGY 159

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           +H  Y V  G D+IVPVD+YIPGCPPT  A LYG       ++++  
Sbjct: 160 YHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERR 206


>UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=57 Tax=cellular organisms
           RepID=NDUS7_MOUSE
          Length = 224

 Score =  216 bits (549), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 2/159 (1%)

Query: 16  PMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS 75
           P +  E + +    L+   +RS  ++ +  G    C +E+    +P +D +RFG+    S
Sbjct: 67  PRSRAEYVVTKLDDLINWARRS-SLWPMTFG-LACCAVEMMHMAAPRYDMDRFGVVFRAS 124

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G +T  M     + +   P+P+  +S G+C N GG +H  Y V  G D+I
Sbjct: 125 PRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRI 184

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           VPVD+Y+PGCPPT  A LYG       ++++   +    
Sbjct: 185 VPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYR 223


>UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=1
           Tax=Thermococcus onnurineus NA1 RepID=B6YTX0_THEON
          Length = 273

 Score =  215 bits (548), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 30/241 (12%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS +V+ ++ G CNGC+IEI   L+P +D ERFGIK+V SPRHA  LL +G +TR     
Sbjct: 8   RSIWVFHLNTGSCNGCDIEIIDVLTPFYDVERFGIKLVGSPRHAHALLVSGPLTRQAYYG 67

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV---------------WGGTDKIVP-- 137
           A    ++  P+P++ ++ G C  SGGIF++ Y V                GG  +++   
Sbjct: 68  AKETIKAMPPEPRVIVAIGTCTCSGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADL 127

Query: 138 --------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
                     +YIPGCPP P   +YG A  +GL+E+K+  +   + +  P ++  G + +
Sbjct: 128 RDEGEKVGPVIYIPGCPPRPEEIIYGIAQLVGLVEKKLSYQEYSD-ELVPFKLPEGPLEE 186

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVV 249
            +R+ +    R L GY    +I +D++  + + E+        E   RL +  +     V
Sbjct: 187 RIRLTLMERLRHLVGYLDREKILEDFMGLVKEAEKSENP---REELARLVKDYAAKCGDV 243

Query: 250 E 250
            
Sbjct: 244 R 244


>UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=Bacteria
           RepID=NUOB_RUBXD
          Length = 251

 Score =  214 bits (544), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 19/228 (8%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHAD 80
           +I +     L    R   ++ +  G    C IE+ +T     D ERFG      SPR AD
Sbjct: 11  NIITTSTDKLFNWARKNSLWPLQFG-LACCAIEMMSTGMAHNDLERFGAGFFAGSPRQAD 69

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +++ +G V+  M     R ++  P+PK  I+ GAC  SGG F D Y V  G D+++PVDV
Sbjct: 70  VMIVSGTVSTKMAERMTRLYEQMPEPKWVIAMGACAISGGPFLDGYSVLMGADRVIPVDV 129

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQK--IHARGPGELDEQPAEILHGDMVQPLRVKVDR- 197
           Y+PGCPP P A ++G       +E++  +    P          +   + +    ++   
Sbjct: 130 YVPGCPPRPEALIFGIMTLQKKIEREQQVGYEKPRPALVDEEGNIREYLPEREYRQISEG 189

Query: 198 EARRLAG-------YRYGRQIADDYLTQLGQGEEQVARWLEAENDPRL 238
           +A R  G       Y + R+        L  G      W+  E   RL
Sbjct: 190 KAHRPKGIKRLPRTYVFQRK-------GLPPGSMTDVGWIPPEARERL 230


>UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Eukaryota
           RepID=NDUS7_RECAM
          Length = 182

 Score =  208 bits (529), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 4/150 (2%)

Query: 21  ESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA 79
           E I S    L+   ++ S +       G   C +E+  + +  +D +RFGI   PSPR +
Sbjct: 30  EFIVSKMDELVNWARKGSLWPMTF---GLACCAVEMMHSAASRYDLDRFGIIFRPSPRQS 86

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+++  G +T  M     + +    +P+  +S G+C N GG +H  Y V  G D+IVPVD
Sbjct: 87  DVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 146

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
           +Y+PGCPPT  A LYG       +++    
Sbjct: 147 IYVPGCPPTAEALLYGLLQLQKKIKRSRKT 176


>UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase small subunit n=13
           Tax=cellular organisms RepID=B6YU96_THEON
          Length = 175

 Score =  206 bits (525), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 99/174 (56%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           ++  P D N      +  E +    A L + I RS +V+ V+ G CNGC+IEI A L+P 
Sbjct: 2   SIKVPADQNRTNGTTSEREMLEKRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPR 61

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +DAERFG+K+V SPRHAD+LL TG VT          ++  PDPKI I+ G+C   G +F
Sbjct: 62  YDAERFGVKLVGSPRHADVLLVTGPVTDQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVF 121

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
           ++          I+PVDVY+PGCPP P A LYG  +AL  L + +    P   +
Sbjct: 122 YESPFTNAPLSNIIPVDVYVPGCPPRPEAILYGVVLALEKLAKILKGEVPEGEE 175


>UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_HELMI
          Length = 175

 Score =  202 bits (514), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 2/152 (1%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VV 73
           V   + ++I       +    R   ++ +  G    C IE+ AT +  FD  RFG +   
Sbjct: 15  VDELIKKNIIMTSLEAVFNWARGNSLWPLSSG-LACCAIEMMATGASRFDMARFGYEVFR 73

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
           PSPR AD+++  G +T  M     R ++  P+PK  I+ G+C  +GG F D Y V  G D
Sbjct: 74  PSPRQADLIIIAGTLTWKMAPAIQRVYEQMPEPKWIIAMGSCACTGGPFADSYAVVPGVD 133

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           K++PVDVY+PGCPP P A L GF      ++ 
Sbjct: 134 KVIPVDVYVPGCPPRPEALLDGFLKLKAKIQN 165


>UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=NUOB1_THEYD
          Length = 199

 Score =  201 bits (510), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 2/154 (1%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP 76
           +    +        +    R + ++ +  G    C IE+ AT +  +D +RFGI +  +P
Sbjct: 20  IVPAANTIITTLDKIASWGRCSSLWPLTFG-LACCAIEMMATAASHYDLDRFGIIMRATP 78

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           R AD+++  G VT+ M    +  +   P+P+  I+ G+C  SGGIF + Y    G D+I+
Sbjct: 79  RQADVMIIAGTVTKKMAPVIVNLYHQMPEPRYVIAMGSCACSGGIF-NTYSTVQGVDEIL 137

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           PVDVYIPGCPP P A + G       ++ + H +
Sbjct: 138 PVDVYIPGCPPRPEALIEGLLKLQEKIKTEPHKK 171


>UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=Pirellula staleyi
           DSM 6068 RepID=D2R6Y4_9PLAN
          Length = 227

 Score =  200 bits (508), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 82/179 (45%), Gaps = 5/179 (2%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPS 75
             V+E++ +          R + ++ +  G    C IE+ A  +  +D +RFG      +
Sbjct: 28  ARVEENVFTTSVEQAINWARQSSIWPMTFG-LACCAIEMMAAGASRYDMDRFGAGAFRAT 86

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-FHDLYCVWGGTDK 134
           PR AD+++  G VT  M S   R +   PDPK  I+ GAC   GG  F   Y V  G D 
Sbjct: 87  PRQADLMIVAGTVTYKMASRVRRLYNMMPDPKFVIAMGACTVGGGPYFKWGYHVVKGVDL 146

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLE--QKIHARGPGELDEQPAEILHGDMVQPL 191
           +VPVDVYIPGCPP P A L G       ++  +    +  G       E +  ++  P 
Sbjct: 147 VVPVDVYIPGCPPRPEALLEGLMRIQDKIKGHRIAKKKSTGSGFLTVGEKVEDELPIPH 205


>UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=cellular organisms
           RepID=NUOB_GRABC
          Length = 194

 Score =  199 bits (507), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 1/147 (0%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH 78
            D+         L    R+  ++ +  G    C +E+     P +D +RFG+    SPR 
Sbjct: 42  ADKGFVVANLDKLVNWARTGSLWPMTFG-LACCAVEMIHAYMPRYDLDRFGVIPRASPRQ 100

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           +D+++  G +T  M     R +   P+P+  IS G+C N GG +H  Y V  G D+IVPV
Sbjct: 101 SDVMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 160

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQ 165
           DVY+PGCPPT  A +YG       + +
Sbjct: 161 DVYVPGCPPTAEALVYGIMQLQKKIRR 187


>UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 Tax=Thermococcus
           RepID=C5A2Q7_THEGJ
          Length = 283

 Score =  199 bits (507), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 34/244 (13%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS YV+ +D G CNGCEIE+F  L+P +DAER G+++  SPRHA  +  TG +TR     
Sbjct: 4   RSLYVFHLDTGACNGCEIELFDILTPYYDAERLGVRLAASPRHAHAMAATGPLTRQAYYA 63

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV---------------WGGT------- 132
           A  A ++  P P+I ++ G C  SGGIF++ Y +                GG        
Sbjct: 64  AKEAIKAMPPKPRIIVAIGTCACSGGIFYNGYPIYRRPESGREGQEYPRRGGIFELVQDL 123

Query: 133 ---DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
               + V   VYIPGCPP P   LYG A+ALGL+E+++        +E   E+    + +
Sbjct: 124 RDEGEYVGPVVYIPGCPPRPEEILYGVALALGLVEKQVKGEYYT--EEVGFELPEYPIEE 181

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQV------ARWLEAENDPRLNEIVS 243
            +R+ +    + + GY    ++ +D++  + + +           +     DPR++  + 
Sbjct: 182 RIRLSLRERLKYVVGYFDREKVLEDFMELVAKAKSAEELHGLIQGYCLKNPDPRVSLAMR 241

Query: 244 HLNH 247
            L  
Sbjct: 242 VLER 245


>UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=cellular organisms
           RepID=A3DKH2_STAMF
          Length = 165

 Score =  199 bits (506), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 68/138 (49%), Positives = 91/138 (65%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
             S  K I+ + ++   + G CNGC+IE+ A ++PL+D ERFGIK+ PS RHADIL+ TG
Sbjct: 20  GDSKYKIIRYTPWLIHFNTGACNGCDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTG 79

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
           AVT+       R ++  PDPK  ++ GAC  SGG+FH+ Y V  GTDK++PVD+Y+PGCP
Sbjct: 80  AVTKKAAERLKRLYEQMPDPKFVVAVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCP 139

Query: 147 PTPAATLYGFAMALGLLE 164
           P P A L G    L  LE
Sbjct: 140 PRPEAILDGIVKLLKRLE 157


>UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=Thermoproteaceae
           RepID=A8MBS9_CALMQ
          Length = 374

 Score =  198 bits (504), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 18/237 (7%)

Query: 5   LGPRDANGIPVP-MTVDESIASMKASLLKK-IKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           +G    N + +   ++   I  +  SL     K S +   +       C +E     +P 
Sbjct: 1   MGDTTVNTLKITLKSIGMDIKLLPDSLASWGTKFSIWPAHLVT---ACCGVEFAHASAPG 57

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +DAER+G   +  PR  + ++  G VTR M      A++  P PK  I+ G+C   GG+F
Sbjct: 58  YDAERWGFLPIFGPRQTNSIVIEGTVTRKMARIVKTAYEQMPYPKFVIAMGSCAMEGGVF 117

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK-----IHARGPGELDE 177
            + Y V    ++IVPVD ++ GCPPTP A +    M    +E K     I          
Sbjct: 118 WNSYHVVR-VNEIVPVDAWVMGCPPTPEAVIRAIRMVQSKIEGKEVKPNIRPNPVDLSKV 176

Query: 178 QPAEILHGDMVQPLRVKVDR-------EARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
              +        P R++ +        +      +  G+++ D +   L  G +  A
Sbjct: 177 LKPDKPQRPPNPPHRIEFELIKDINVCKPAANVKWELGQKLIDGFKESLKDGVKNTA 233


>UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=Bacteroidales
           RepID=NUOB_BACV8
          Length = 198

 Score =  198 bits (503), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 74/152 (48%), Gaps = 2/152 (1%)

Query: 29  SLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHADILLFTGA 87
             L    RS  ++ +     + C IE  A  +  +D  RFG +V   SPR AD+++  G 
Sbjct: 42  DDLINWGRSNSLWPLTF-ATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIMVAGT 100

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 147
           +T  M     R +    DPK  I+ G C  SGG F   Y V  G DKI+PVDVYIPGCPP
Sbjct: 101 ITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIPGCPP 160

Query: 148 TPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
            P A LYG       ++ +    G    + +P
Sbjct: 161 RPEALLYGMIQLQRKVKLEKFFGGVNRKENEP 192


>UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IG01_9CLOT
          Length = 266

 Score =  197 bits (502), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 90/165 (54%), Gaps = 9/165 (5%)

Query: 8   RDANGIPVPMTVDESI---------ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAT 58
           RD         +DE I           +   + KK  RS  +  VD G CNGC+ EI A 
Sbjct: 102 RDLLRATPLYVIDEEINGTDYELIGKKLNEKVAKKFGRSLNIREVDAGSCNGCDYEIQAL 161

Query: 59  LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
             P  D ERFGI  V SPRHAD+LL TG V+R M    ++ + + P PK+ ++ GAC  S
Sbjct: 162 NGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVVAAGACACS 221

Query: 119 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
           GG+F D Y    G D I+PVDVYIPGCPP P A +YG    +G L
Sbjct: 222 GGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILKGIGRL 266


>UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A1ASR2_PELPD
          Length = 179

 Score =  197 bits (502), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 96/153 (62%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             RS +VY  + GGCNGC+IE+   L+P +D ERFGIK+V SPRHAD++L  G   R+  
Sbjct: 10  FGRSLWVYHANSGGCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQGPAMRSTG 69

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               RA+ + P PK+  + G+C   GGI+HD Y V G  +K++PV+ Y+PGCPP P A +
Sbjct: 70  KALQRAYAAMPGPKLVFAIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPGCPPRPEAII 129

Query: 154 YGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
           +G A+A GL+++K       ++ + P    H +
Sbjct: 130 WGVAVAAGLVDKKTAPVEFKQVSDFPMPRYHPE 162


>UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=Bacteria
           RepID=NUOB2_CHLT3
          Length = 195

 Score =  197 bits (500), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 7/182 (3%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           + +   ++L   + S  ++ +  G    C IE+ AT +  +D ERFGI    SPR +D++
Sbjct: 14  VITAAENVLNWARLS-SLWPMGFG-LACCAIEMMATNASNYDLERFGIFPRSSPRQSDLM 71

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD-LYCVWGGTDKIVPVDVY 141
           +  G VT  M    +R ++  P+P+  +S G+C N GG + +  Y V  G D+I+PVDVY
Sbjct: 72  IVAGTVTFKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVVKGVDRIIPVDVY 131

Query: 142 IPGCPPTPAATLYGFAMALGLL-EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
           +PGCPP P A + G      L+ E+K        ++    + +  +    + V+    A+
Sbjct: 132 VPGCPPRPEALIGGLMKVQELIREEKFAGDRREAIERLKPKKVKAE---DVIVETSASAK 188

Query: 201 RL 202
           +L
Sbjct: 189 KL 190


>UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_CLOB8
          Length = 169

 Score =  196 bits (499), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPR 77
           ++++I   K        R+   + +  G    C IE+ A     +D  RFG +    SPR
Sbjct: 15  IEKNIILTKLDDTLNYFRAHSFWPLTFG-LACCAIEMMAAGGARYDIARFGYEVFRASPR 73

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+++  G +T  M     + +   P+PK  I+ G+C  SGG F D Y V  G D  +P
Sbjct: 74  QADLMIVAGTITEKMAPIVKKIYDQMPEPKWVIAMGSCATSGGPFVDSYNVVPGADTFLP 133

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
           VDVYIPGCPP P A ++G       +   IH +  G  +
Sbjct: 134 VDVYIPGCPPRPEALIHGLLTLKEKI---IHPKEVGRSE 169


>UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Tax=cellular
           organisms RepID=NDHK_THEEB
          Length = 237

 Score =  196 bits (497), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 5/175 (2%)

Query: 1   MSNLLGPRDANGIPVPM---TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFA 57
           M+N   P   N I  P     + E+I     + +    R + ++ +  G    C IE  A
Sbjct: 1   MTNTTSPAILNPIARPEVPQELAENIILTSLNDVYDWARLSSLWPLMYG-TACCFIEFAA 59

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            +   FD +RFG+    SPR AD+++ +G +T  M    +R ++  P PK  I+ GAC  
Sbjct: 60  MIGSRFDFDRFGLVPRNSPRQADLIITSGTITMKMAPALVRLYEQMPSPKYVIAMGACTI 119

Query: 118 SGGIF-HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           +GG+F  D Y    G DK++PVDVY+PGCPP P A +         +  +     
Sbjct: 120 TGGMFSSDSYSAVRGVDKLIPVDVYLPGCPPRPEAIMDAIVKLRKKIANEHINER 174


>UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax=Bacteria
           RepID=NUOB1_ROSS1
          Length = 268

 Score =  196 bits (497), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRA 91
              R + ++ +  G    C IE+ AT    FD  RFG +    SPR AD+++  G VT+ 
Sbjct: 26  NWGRRSSIWPLSFG-LACCAIEMMATGLARFDLARFGAEMFRASPRQADLMIVAGTVTKK 84

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M    +R +   P+P+  IS GAC  SGG F D Y V  G D ++PVDVYIPGCPP P A
Sbjct: 85  MAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEA 144

Query: 152 TLYGFAMALGLLEQKIHA--RGPGELDEQPAEIL 183
            L+        ++ +     R  G+ + +   + 
Sbjct: 145 LLHALMTLQKQIDAQRLNQVRWYGKREAKEYPVP 178


>UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID=B6IT61_RHOCS
          Length = 196

 Score =  195 bits (496), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/186 (39%), Positives = 97/186 (52%), Gaps = 2/186 (1%)

Query: 4   LLGPRDANG-IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           L GPR   G  P   TV+     +  +  +++ RS  + +VD G CN CE+EI A  +P+
Sbjct: 10  LKGPRTIAGPAPADATVEALARRLDTASRRRLGRSLAIRQVDAGSCNACEMEIHALNNPV 69

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +D ERFG   V SPRHAD+LL TG VT  MR   L+ W++ PDPK  ++ G C   GG F
Sbjct: 70  YDLERFGFSFVASPRHADVLLVTGPVTTNMREALLKTWEATPDPKWVVALGQCAIDGGPF 129

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI-HARGPGELDEQPAE 181
            D Y V GG +K+VPVD+ IPGCPP P   L      +    +        G     P E
Sbjct: 130 ADSYAVVGGVEKVVPVDLMIPGCPPRPVDILAALVALIEAEARPPSRPAASGTPAGAPRE 189

Query: 182 ILHGDM 187
                +
Sbjct: 190 RREPTL 195


>UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-like) n=1
           Tax=uncultured methanogenic archaeon RC-I
           RepID=Q0W2C0_UNCMA
          Length = 247

 Score =  195 bits (496), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/145 (46%), Positives = 93/145 (64%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             ++  + K   RS  +  VD G CNGCE+E+ +  + ++D ERFG+ +V SPRHAD LL
Sbjct: 103 RELEKKIKKAFGRSLAIREVDAGSCNGCEVEVNSLSNAIYDIERFGLHIVASPRHADALL 162

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG VTR M    ++++ + PDPK+ I+ GAC  +GGIF D Y V+ G D +VPVDVYIP
Sbjct: 163 VTGPVTRNMERGLMQSYNATPDPKMVIAMGACAITGGIFRDSYAVYNGVDALVPVDVYIP 222

Query: 144 GCPPTPAATLYGFAMALGLLEQKIH 168
           GCPP P A + G  +A+   E+K  
Sbjct: 223 GCPPRPQAIIQGIMLAIDRWEEKRK 247


>UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_HYDS0
          Length = 177

 Score =  195 bits (496), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           I +    LL    R   ++ V   G   C IE+    +  FD +R G+    SPR AD+L
Sbjct: 11  ITTTVDELLSW-GRRNALWPV-TIGLACCAIEMMHAAASRFDIDRLGMIFRASPRQADVL 68

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           +  G V   +       W   P+PK CIS G C ++GG F   Y    G D+I+PVDVYI
Sbjct: 69  IVAGTVVNKVAPMLKLVWDQMPEPKWCISMGGCASAGGPFP-TYSTLQGIDRIIPVDVYI 127

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           PGCPPTP   +YG       + +K   R     +E   ++
Sbjct: 128 PGCPPTPQGLIYGLLELQRKIREKKVTRYEKAFEEFKKDL 167


>UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=14 Tax=Bacteria
           RepID=B1ZSE5_OPITP
          Length = 279

 Score =  194 bits (492), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 97/158 (61%), Gaps = 4/158 (2%)

Query: 13  IPVPMTVDESIASMKASLLKK----IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
            P      E   ++   L  +    + RS ++  VD G CNGCE+EI A   P++D ERF
Sbjct: 122 APQISETGEKTEALGRELQNRIHSLLGRSLHIREVDAGSCNGCEVEINALSGPIYDLERF 181

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           GI +V SPRHAD+LL TG VTR M     + + + P+P++ ++ GACG SGG+F   Y  
Sbjct: 182 GIHLVASPRHADMLLVTGPVTRNMELALRKTYDATPEPRLVVAVGACGCSGGMFGRNYAT 241

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
            G  D ++PVDVYIPGCPP P A L+G  +A+G LE++
Sbjct: 242 CGSVDSVLPVDVYIPGCPPNPFALLHGILLAVGRLEKR 279


>UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteobacteria
           RepID=B9L8U0_NAUPA
          Length = 164

 Score =  193 bits (491), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/142 (42%), Positives = 86/142 (60%)

Query: 30  LLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVT 89
             K  K+S ++   + GGCNGC+IEI A L+P +D ERFG+    +P+ +DILL TG VT
Sbjct: 4   FTKFRKKSPWILHYNTGGCNGCDIEILAALAPKYDIERFGMLNRGNPKQSDILLVTGPVT 63

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
           +  R    R +   P+PK+ ++ GAC + GGIF D Y V  G D I+PVDV+IPGC P  
Sbjct: 64  KRCRDVLRRLYLEMPEPKVVVAMGACAHGGGIFRDFYHVENGVDNIIPVDVWIPGCAPRV 123

Query: 150 AATLYGFAMALGLLEQKIHARG 171
            A + G   A+ + E+K   + 
Sbjct: 124 EAVIDGMVEAVKIWEKKTKEKE 145


>UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyces limnophilus DSM
           3776 RepID=C1ZCK3_PLALI
          Length = 225

 Score =  193 bits (491), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 82/186 (44%), Gaps = 4/186 (2%)

Query: 7   PRDANGIP-VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA 65
           P  + G P +    +E++            + + V+ +  G    C +E+ AT    +D 
Sbjct: 19  PLPSAGSPWIEGRFEENLIVTTLEQAMNWGQLSSVWPLTFG-IACCAMEMMATGMSKYDL 77

Query: 66  ERFGI-KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-FH 123
           +RFG      +PR AD+++  G VT  M S   R +   PDPK  I+ GAC   GG  F 
Sbjct: 78  DRFGSGAFRATPRQADLMIVAGTVTYKMASRIRRLYDQMPDPKYVIAMGACTIGGGPYFK 137

Query: 124 DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEIL 183
             Y V  G D +VPVDVYIPGCPP P A L G       +  +   R        P    
Sbjct: 138 YGYHVVKGVDLVVPVDVYIPGCPPRPEALLEGVMRIQDKIRARKLGRNTVSQLPVPHRSG 197

Query: 184 HGDMVQ 189
           +G +  
Sbjct: 198 YGKLAP 203


>UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=Bacteria
           RepID=NUOB2_ACIBL
          Length = 202

 Score =  193 bits (490), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRH 78
           +++        +    R + V+ +  G    C IE+    +  +D  RFG +   PSPR 
Sbjct: 9   EKNFLLSSVDYVFNWARKSSVWPMTFG-LACCAIEMITASTARYDIARFGSEVFRPSPRQ 67

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           +D+++  G VT  M     R ++  P+PK  ++ GAC + GG F + Y    G DKIVPV
Sbjct: 68  SDLMIVAGTVTLKMAPVVQRIYEQMPEPKWVMAMGACASVGGPF-NTYATLQGVDKIVPV 126

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD 196
           DVY+ GCPP P    YG       ++    A+ P ++       L   M+   R  V 
Sbjct: 127 DVYVVGCPPRPENLFYGLLKLQDKIDHMTLAKRPTDVR------LDETMLDEFRKSVR 178


>UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Ajellomyces
           dermatitidis RepID=C5GDP9_AJEDR
          Length = 245

 Score =  193 bits (490), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKA-----SLLKKIKRSAYVYRVDCGGCNGCEIEIF 56
           S L   R      +  + DE   +M         +    R A ++ +  G    C +E+ 
Sbjct: 67  STLGVARMERSSSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLG-LACCGLEMM 125

Query: 57  ATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACG 116
           A   P +D +R G     SPR +D+L+  G VT  M       +   PDPK  IS G+C 
Sbjct: 126 AVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCA 185

Query: 117 NSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           N GG +H  Y V  G D+++PVDVY+PGCPPT  A +Y  ++    L  K      
Sbjct: 186 NGGGYYHYSYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKLIVKSRTTRI 241


>UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteroidales
           RepID=NUOB_AZOPC
          Length = 191

 Score =  192 bits (489), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRH 78
             +IA  K + L    RS  V+ +     + C IE     +  +D  RFG +V   SPR 
Sbjct: 23  GANIAIAKLNDLINWGRSNSVWPLTF-ATSCCGIEFMCLGAARYDFARFGWEVTRNSPRQ 81

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           AD++   G +   M     R +    +PK  I+ G+C  SGG F   Y    G DKI+PV
Sbjct: 82  ADVVFCCGTIVHKMAPVLKRLYDQMSEPKYVIALGSCAISGGPFKSSYHTIMGIDKIIPV 141

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLE 164
           DVYIPGCPP P A +YG       ++
Sbjct: 142 DVYIPGCPPRPDAMIYGMIQLARKIK 167


>UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=9 Tax=Bacteria
           RepID=B2IID4_BEII9
          Length = 177

 Score =  192 bits (488), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF 63
           L  P      P    +    A +      ++ RS  +  VD G CNGCE+EI A  +  +
Sbjct: 9   LAKPPLTEAGPTDGEIAALAAELDHLARSRLGRSLAIREVDAGSCNGCELEINALGNAFY 68

Query: 64  DAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH 123
           D ERFG++ V SPRHAD+LL TG VT  MR   LR + + P+PK  ++ G C    G+F 
Sbjct: 69  DLERFGLRFVASPRHADVLLVTGPVTHNMREALLRTYDATPNPKWVVAAGTCALGEGVFA 128

Query: 124 DLYCV-WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
           + Y    GG   ++ VD+YIPGCPPTP   L G    +  
Sbjct: 129 ESYACQKGGVSAVIAVDLYIPGCPPTPTDLLKGLLALITK 168


>UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=Fibrobacter
           succinogenes subsp. succinogenes S85 RepID=C9RJJ6_FIBSS
          Length = 211

 Score =  192 bits (487), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 14/203 (6%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHAD 80
           +I +     L    RS  ++    G    C IE  +T    +D  R G +    +PR +D
Sbjct: 9   NIITSSLDFLVNWGRSNSLWPFPYG-TACCAIEFMSTEVGRYDLSRIGSEYVRFTPRQSD 67

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +LL  G +T        R ++   +P+  I+ GAC +SGG F+D YC   G D I+PVDV
Sbjct: 68  VLLVAGTITYKQAPILKRIYEQMAEPRWVIAMGACASSGG-FYDCYCTVPGIDHIIPVDV 126

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
           YI GCPP P A           ++ +          +Q AE +   +   +      EA+
Sbjct: 127 YIGGCPPRPEAFFDAMFDLQKKVKDE-------SFMKQRAESVKEQLE--MIKVKTAEAK 177

Query: 201 RLAGYRYGRQIAD--DYLTQLGQ 221
           R A      ++ D  D++ +  +
Sbjct: 178 REAAACAREKVVDIKDFMKEKQE 200


>UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=Myxococcales
           RepID=NUOB2_SORC5
          Length = 182

 Score =  191 bits (485), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 78/174 (44%), Gaps = 4/174 (2%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKK---IKRSAYVYRVDCGGCNGCEIEIFATL 59
           NL+ P               I +     +       RS  V+ +  G    C IE+  T 
Sbjct: 6   NLMAPPRGWEAKYESDGGGVITTSVDQTVNWLLNWGRSNSVWYMLFG-LACCAIELMQTG 64

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
            P  D ERFG    PSPR +D+ +  G +T  M +   R +    +P+  IS G+C N G
Sbjct: 65  GPRGDLERFGAAPRPSPRSSDLFIIAGTLTYKMATRVKRLYDQMSEPRFVISMGSCSNCG 124

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
           G+F   Y V  G D+I+PVDVY+PGCPP P A L G       ++ +      G
Sbjct: 125 GLFQYAYSVCKGVDQIIPVDVYVPGCPPRPEALLEGLLKIQEKIKSERALGRRG 178


>UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NUN9_HALUD
          Length = 183

 Score =  191 bits (485), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 86/156 (55%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           M   +     RS ++  ++CG CNGC+IE    L P +D ERFGI+   +PRHAD+L+ T
Sbjct: 1   MGRIIDWARNRSPWILHMNCGSCNGCDIETLDALMPRYDVERFGIQQKDTPRHADVLVAT 60

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G VT+ M     R ++  P+PK+ I+ G+C  +GG+F D Y    G D ++PVD+Y+PGC
Sbjct: 61  GPVTKQMAPRLERIYEQMPEPKLVIAAGSCAATGGVFQDCYNCHEGIDDVIPVDMYVPGC 120

Query: 146 PPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE 181
           P +P   + G    L    Q+  A        +  +
Sbjct: 121 PISPETLIDGIVALLEEAGQEAKAERLAAAKPEIVQ 156


>UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774
           RepID=B8J1E3_DESDA
          Length = 185

 Score =  191 bits (484), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 7/160 (4%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S ++   DCG CNGC+IE+ A L+P++D ERFG+    +P+HAD+LL TG V    R  
Sbjct: 14  KSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVNAGNPKHADVLLVTGTVNHRNRHV 73

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
             + ++  P PK  IS GAC  SGG+F D Y V  G   ++PVDV++PGCPP P A + G
Sbjct: 74  LKQIYEQMPSPKAVISLGACNLSGGVFKDTYNVLNGAHNVIPVDVFVPGCPPKPEAIIDG 133

Query: 156 FAMALGLLEQKI-------HARGPGELDEQPAEILHGDMV 188
              ALG+L+ K+           PG+ D  PA     +  
Sbjct: 134 VVEALGVLKAKMGMGPVPQATFMPGDEDGTPAGARDEEAP 173


>UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A9KS72_CLOPH
          Length = 144

 Score =  190 bits (483), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/141 (43%), Positives = 87/141 (61%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +K +K+S ++   D   CNGC+IE+ A L+PL+D ERFGI    +P+HADILL TG+V  
Sbjct: 1   MKFVKKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADILLITGSVNE 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
                  + ++   +PKI ++ G C NSGGIF + Y V GG DK++PVDVY+PGC   P 
Sbjct: 61  QNIPVVKQIYEQMAEPKIVVAVGICANSGGIFAECYNVSGGVDKVLPVDVYVPGCAARPE 120

Query: 151 ATLYGFAMALGLLEQKIHARG 171
           A + G    L +LE+K     
Sbjct: 121 AIIDGVVKGLAILEEKQKYAR 141


>UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A8Z3_GEMAT
          Length = 212

 Score =  189 bits (481), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 3/175 (1%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADIL 82
            + +   L    R+  ++ +  G    C IE  AT +  FD  RFG++ +  SPR AD+L
Sbjct: 27  ITTRLDFLVNWGRAGSLWPMPFG-TACCAIEFMATAASRFDLSRFGMERLSYSPRQADVL 85

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           L  G V   +     R +Q  P PK  IS GAC ++GG+F D Y V  G D I+PVDVY+
Sbjct: 86  LCAGRVPLKLAPVLRRIYQQMPQPKWVISMGACASTGGMF-DNYAVVQGIDTIIPVDVYV 144

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           PGCPP P A ++   M    + Q+        ++  P       +      ++  
Sbjct: 145 PGCPPRPEALMHAIIMLQKKVMQERLKDSTRHVEIDPDPTSQLYIPPSRIDELSE 199


>UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 Tax=cellular
           organisms RepID=NDHK2_CYAP4
          Length = 259

 Score =  189 bits (480), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 85/185 (45%), Gaps = 6/185 (3%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
             +   VP  + E+I       +    R + +Y +  G    C IE  A ++  FD ERF
Sbjct: 12  PISSAEVPPELSENIILTSLDDIYNWARISSIYPLMYG-TACCFIEFAAMIASRFDMERF 70

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-HDLYC 127
           G+    SPR AD+++  G +T  M  P  R +   P+PK  I+ GAC  +GG+F  D   
Sbjct: 71  GMFPRASPRQADLIILAGTLTMQMAVPTRRLYDQMPEPKYVIAMGACMITGGMFSADSPT 130

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM 187
              G DK++P+DVYIPGCPP P A L         L +KI    P E            +
Sbjct: 131 ALRGADKLLPIDVYIPGCPPRPEAILDAVT----KLRKKIANESPQERQNLQQTHRFYSI 186

Query: 188 VQPLR 192
              +R
Sbjct: 187 AHQMR 191


>UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=pseudomallei group
           RepID=A5TDF9_BURMA
          Length = 293

 Score =  189 bits (480), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 2/159 (1%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
           P+ +  D  I +   + +    +   ++ +  G    C +E+       +D +RFG+   
Sbjct: 131 PLTLEKDGFIVTTLDAAM-AAAQKNSLWYMTFG-LACCAVEMMHAAGARYDMDRFGMIPR 188

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR  D+++  G +T  M     R +    +P+  +S G+C N GG +H  Y V  G D
Sbjct: 189 ASPRQCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCD 248

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           +IVPVDVY+PGCPPT  A +YG       + ++     P
Sbjct: 249 RIVPVDVYVPGCPPTAEALVYGLMQLQRKVAERSTHSRP 287


>UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=54 Tax=cellular
           organisms RepID=B2A054_OPITP
          Length = 338

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/142 (40%), Positives = 85/142 (59%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +  +++S ++   D   CNGC+IE  A L+PL+D ER G+    +P+HADI L TGAV  
Sbjct: 1   MLGLRKSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVINTGNPKHADIFLVTGAVNE 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
             +      +   P+PK+ ++ G C +SGGIF D Y + GG D+++PVDVY+PGC   P 
Sbjct: 61  QSKEVIRNIYHQLPEPKVVVAIGVCASSGGIFRDCYNIAGGVDRVIPVDVYVPGCAARPE 120

Query: 151 ATLYGFAMALGLLEQKIHARGP 172
           A + G   ALG+LE+K      
Sbjct: 121 AIIDGVVQALGVLERKQSEMSA 142


>UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax=Bacteria
           RepID=NUOB2_STRGG
          Length = 235

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 4/169 (2%)

Query: 7   PRDANGIPVPMTVD--ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           P D   +P P  +     +A     ++    R   ++  + G    C IE  A      D
Sbjct: 19  PADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFNFG-LACCAIEFIAASMARHD 77

Query: 65  AERFG-IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH 123
             R G I   P PR AD+++ +G VT  M     R ++  P+PK  IS+GAC N GG + 
Sbjct: 78  FIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNCGGPYW 137

Query: 124 DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           D Y V  G D+I+PVDVY+PGCPP P A L G       + ++  A   
Sbjct: 138 DSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARESLAERY 186


>UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=Desulfotomaculum
           acetoxidans DSM 771 RepID=C8W241_DESAS
          Length = 236

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 97/159 (61%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           +G  +   +  P + ++   +++  + K   RS ++  VD G CNGC+ EI +  +P++D
Sbjct: 78  IGETEVPVLTAPASAEDLGRALREKIKKICHRSLHIRYVDAGACNGCDFEINSMTNPVYD 137

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD 124
            +++G+  V SPRHAD+LL TG VTR +     + +++ P P + ++ GAC   GG+F +
Sbjct: 138 IQQYGVDFVASPRHADMLLVTGVVTRNLEIALHKTYEACPRPALVVAVGACACGGGVFKE 197

Query: 125 LYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            Y   GG DK +PVDVY+PGCPPTPA  + G   A+G L
Sbjct: 198 AYASGGGVDKFLPVDVYVPGCPPTPAQIIKGILTAIGRL 236


>UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_ACIBL
          Length = 213

 Score =  187 bits (475), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 12  GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK 71
                   +E I            R   ++ +  G    C IE+ +  +  FD  RFG +
Sbjct: 45  RATFGEQPEEGIVLTTLDNAVNWIRKNSIWPMTFG-LACCAIEMMSMGASRFDIARFGAE 103

Query: 72  -VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
              PSPR +D+++  G V++ M       +   P+PK  IS GAC  SGG+F + Y +  
Sbjct: 104 VFRPSPRQSDLMIIAGRVSQKMAPVIRHLYLQMPEPKWVISMGACATSGGVF-NNYALVQ 162

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
           G ++ +PVD+Y+PGCPP P   +Y   +    ++ + 
Sbjct: 163 GVNQYIPVDIYVPGCPPRPEQLIYAITLLQEKIQAER 199


>UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydrogenasei, chain b)
           (Ndh-1, chain b) n=1 Tax=Persephonella marina EX-H1
           RepID=C0QR84_PERMH
          Length = 181

 Score =  187 bits (474), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 4/173 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           + +++  L    + S +   V   G   C IE+  T +  FD +R GI    SPR +D+L
Sbjct: 11  LTTVEEVLSWGRRNSLWPASV---GLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSDVL 67

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           +  G V   +       +   PDPK  I+ G C ++GG F   Y    G D+I+PVDVY+
Sbjct: 68  IVAGTVVNKVAPMLKLIYDQMPDPKWVIAMGGCSSAGGPFP-TYATLQGVDRIIPVDVYV 126

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
           PGCPPTP A L+G       ++ K   +   E+  +        +    +  +
Sbjct: 127 PGCPPTPQALLWGILELQKKIKAKKEGKVWEEIPVREVPTASQPIPIKEKSPL 179


>UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=A6UVJ5_META3
          Length = 246

 Score =  187 bits (474), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/141 (46%), Positives = 84/141 (59%)

Query: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
           T+ E   S   S+ K   +S Y+  V  GGCN C+ +I    +P++D  RFGIK V SPR
Sbjct: 103 TLKEPDTSSLKSIKKLFGKSVYLREVCAGGCNACDADINVLNTPVYDLSRFGIKFVASPR 162

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
           HAD L+ TG VT+ M    ++ + + P PK  I+ G C  SGGIF +   V GG DKI+P
Sbjct: 163 HADGLVITGPVTKNMELALMKTYDATPSPKFVIAVGTCAISGGIFRENEEVVGGVDKILP 222

Query: 138 VDVYIPGCPPTPAATLYGFAM 158
           VD+YIPGCPP P   LY F  
Sbjct: 223 VDLYIPGCPPHPFTNLYAFVK 243


>UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometricum borinquense
           DSM 11551 RepID=C1VB41_9EURY
          Length = 236

 Score =  186 bits (472), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 5/179 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADI 81
           I +   + +  ++ S  ++ +  G    C IE+  T S   D +RF       SPR AD+
Sbjct: 48  ILTKFDNFMNWVRGS-SMFMLQFG-IACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADV 105

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G +         R +   P+PK  +  G+C  SGG F + Y V  G ++++PVD++
Sbjct: 106 IIVPGTIVSKFAPRMKRVYDQMPEPKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIH 165

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP--AEILHGDMVQPLRVKVDRE 198
           +PGCPP P A +YG A     + +   +    +  E     ++   +++  L  ++D E
Sbjct: 166 VPGCPPRPEALIYGVAKLQQRIAEGESSPVTVKPYELEQFGDLEQDELIDHLADQIDEE 224


>UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=Actinomycetales
           RepID=NUOB1_SALAI
          Length = 188

 Score =  186 bits (472), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 7/156 (4%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
           VP  + E I  +         R   ++  + G    C IE  AT     D  R G+    
Sbjct: 3   VPAVLGEPIRFVL-----NWGRRYSLWVFNFG-LACCAIEFIATSMSRHDFMRLGVIPFA 56

Query: 75  S-PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
             PR AD+++ +G VT  M     R +   P+PK  IS+GAC N GG + D Y V  G D
Sbjct: 57  HGPRQADLMVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVD 116

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
           +++PVDVY+PGCPP P A L+G       +  +   
Sbjct: 117 QLIPVDVYVPGCPPRPEALLHGILRLQEKIAAEGAG 152


>UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=Dehalococcoides
           RepID=NUOB_DEHSC
          Length = 200

 Score =  186 bits (472), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPS 75
                 I S++  L      S +       G   C IE+    +  +D  RFG+     S
Sbjct: 48  PPPGVFITSVEKVLNWSRHYSLWPVMF---GLACCAIEMMCMAASRWDLARFGMDIFRAS 104

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G +T  M     R +   P+PK  ++ GACG SGG+F D Y V  G + +
Sbjct: 105 PRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMGACGTSGGLFRDSYSVVPGFNLV 164

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           VPVDVY+PGCPP P A +         +++
Sbjct: 165 VPVDVYVPGCPPRPEALMRAIMDIHEKIDK 194


>UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           carboxidivorans P7 RepID=C6PUG1_9CLOT
          Length = 242

 Score =  186 bits (471), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 86/143 (60%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +K  +  K KRS  +  VD G CNGC +E+  T +  +D  R+GIK   SPRHAD ++
Sbjct: 100 QEVKEKIYSKFKRSLVLRSVDTGSCNGCMMEVSNTQNTYYDLSRYGIKFAASPRHADGIV 159

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG VT  M+   ++ + +  DPKI I+ G+C  SGGIF D Y V    ++I+ V++ IP
Sbjct: 160 VTGPVTLNMKEALIKTYDAISDPKIVIAVGSCAYSGGIFKDGYSVCEDLNEILKVNLVIP 219

Query: 144 GCPPTPAATLYGFAMALGLLEQK 166
           GCPP+P A LYG    +  L+++
Sbjct: 220 GCPPSPQAILYGMLKIINKLDEE 242


>UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Geobacter
           metallireducens GS-15 RepID=Q39SF9_GEOMG
          Length = 244

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 79/152 (51%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
           +  P +       +   L +   RS     V  GGCN CE +     +  +D  RFGI+ 
Sbjct: 92  LVHPGSEHHHARPLPPDLRRLFGRSLKFREVSAGGCNACEADTNVLSTIGWDLGRFGIQF 151

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
           V SPRHAD L  TG VT  M    L  +++ PDPKI ++ GAC  +GG + D   V  G 
Sbjct: 152 VASPRHADGLWVTGPVTEHMAKALLTTYEAIPDPKIVVACGACAINGGPYIDTPQVCNGV 211

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           D IVPVD+YIPGCPP PA  L G    L  ++
Sbjct: 212 DSIVPVDLYIPGCPPHPATILDGLLRILNKIK 243


>UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Thermofilum
           pendens Hrk 5 RepID=A1RWL1_THEPD
          Length = 245

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
           K      +KRS Y+ RVD G CNGC+IE+F  L+P FD ER G+K+V SPR AD++L TG
Sbjct: 6   KQKAYDALKRSVYLLRVDSGSCNGCDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTG 65

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
            VTR         +++AP P + ++ GAC   GGI++D Y   GG DK++PVDVYIPGCP
Sbjct: 66  PVTRQFLPVLKATYEAAPKPCVVVACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCP 125

Query: 147 PTPAATLYGFAMALGLLEQKIHARGPGELDE-QPAEILHGDMVQ---PLRVKVDREARRL 202
           P P A L+G A+AL +LEQK+         E     +   +       L   +  E  + 
Sbjct: 126 PRPHAILHGVAVALDILEQKVKRSETKADAESFKPALPSLEGAINSWELYRALKLELYKH 185

Query: 203 AGYRYGRQIADDYLTQLG--QGEEQVARWLEAENDPRLNEI 241
            GYR G ++  D L      +  +  A   E     + ++ 
Sbjct: 186 LGYRIGYRVLCDLLRISKGSKDLDDFAAKAEKAVSEKYHDA 226


>UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=cellular organisms
           RepID=NUOB_DEIGD
          Length = 178

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHA 79
           E +       L    RS  ++    G    C IE+ ++     D  RFG +    SPR A
Sbjct: 17  EGVLFSTLEKLVAWGRSNSLWPATFG-LACCAIEMMSSTDGRNDLSRFGSEVFRASPRQA 75

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+++  G +++ M     R +   PDPK  IS GAC +SGG+F + Y V    D +VPVD
Sbjct: 76  DVMIVAGRLSKKMAPIMRRVYDQMPDPKWVISMGACASSGGMF-NNYAVVQNVDHVVPVD 134

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           V++PGCPP P A +Y        +  + +     +L    A
Sbjct: 135 VFVPGCPPRPEALIYAVMQLQKKVRGEAYDARGEQLPMVEA 175


>UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=Planctomycetaceae
           RepID=D2R5G9_9PLAN
          Length = 192

 Score =  184 bits (466), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 8/174 (4%)

Query: 19  VDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSP 76
            +  + +    L    ++ S +           C IE+ AT +   D  RFG +    SP
Sbjct: 6   PENVMVTKLDELANWCRKNSLWPMPFAT---ACCGIELMATGASRHDLARFGAEVFRFSP 62

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           R  D+++  G V   M     R WQ   +PK CIS GAC ++GG+F D Y V  G D+ +
Sbjct: 63  RQCDLMIVAGRVVMKMLPVLQRIWQQMHEPKWCISMGACASTGGVF-DTYAVVQGIDRFI 121

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQK--IHARGPGELDEQPAEILHGDMV 188
           PVD+Y+PGCPP P             ++++  I          Q  +    ++ 
Sbjct: 122 PVDMYVPGCPPRPEQLTQAIIDLQDKIQREGTITGEEFETAARQERKRALQELP 175


>UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular
           organisms RepID=NUBCD_PELCD
          Length = 794

 Score =  184 bits (466), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPS 75
            ++ ++I            R   ++ +  G  + C +E+  +++P FD  RFG + +  +
Sbjct: 3   ESIPKNIILTTLDDAINWGRKNSMWPMFFG-LSCCFVEMMGSMTPRFDLARFGAEVLRGT 61

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G   + M +  LR ++   +PK  I+ G+C NSGG++ D+Y V  G +++
Sbjct: 62  PREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCANSGGMY-DVYSVMQGVNQV 120

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           +PVDVYIPGCPP P A + G       + +K     P
Sbjct: 121 LPVDVYIPGCPPRPEAFMQGLMTLQEKIARKESPARP 157


>UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=cellular organisms
           RepID=C9RKY2_FIBSS
          Length = 419

 Score =  183 bits (465), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 16/206 (7%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           L P+  + IP    V  +I       +    R+  ++ +  G  + C IE+ ++    +D
Sbjct: 6   LAPKILDPIPGGKYVVNAI-----DYVVNWARANSIWPLTYG-TSCCAIEMMSSSMARYD 59

Query: 65  AERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF- 122
             RFG +    SPR AD+ +  G +TR M       W+  P PK  I+ GAC  SGG F 
Sbjct: 60  IARFGSEVFRSSPRQADLFILAGTITRRMAPAIQMLWEQIPGPKYVIAMGACTISGGPFI 119

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI--------HARGPGE 174
           +D Y V  G   ++PVDV++PGCPP P A  +G       + ++           +    
Sbjct: 120 YDNYSVVRGAQNLIPVDVFVPGCPPRPEALFHGLLTLREKILKETCRNPWHEGEPKDVST 179

Query: 175 LDEQPAEILHGDMVQPLRVKVDREAR 200
           +D           ++ ++ +   EAR
Sbjct: 180 MDRYREAAKTWAALEEMKDEQMAEAR 205


>UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
           ATCC 25986 RepID=A4EBM2_9ACTN
          Length = 195

 Score =  183 bits (465), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 60/144 (41%), Positives = 81/144 (56%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
           K+ RS +V   D   CNGC+IE+ A+L+PLFDAERFG+    +P+HADI L TG+V    
Sbjct: 4   KMSRSPWVIHYDGSSCNGCDIEVLASLTPLFDAERFGVVNTGNPKHADIFLVTGSVNAQN 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAAT 152
                + +    +PK  ++ G C  SGG+F D Y V GG D+ +PVDVY PGC   P   
Sbjct: 64  LPVVRQIYNQMLEPKCVVACGICACSGGVFRDAYNVIGGVDRAIPVDVYAPGCAIRPETV 123

Query: 153 LYGFAMALGLLEQKIHARGPGELD 176
           +     A G+L+QK      G   
Sbjct: 124 IDAIVEACGILDQKEAVMRAGGDP 147


>UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=cellular
           organisms RepID=A7I7C9_METB6
          Length = 172

 Score =  183 bits (464), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 1/168 (0%)

Query: 1   MSNLLGPRDANGIPVPMTVDESI-ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATL 59
           +S +LG +    +PV     E I   ++  +  +  RS  +  +D G  N  EIEI    
Sbjct: 5   VSCMLGKKVTGPLPVRDEELERIGREIRREINARFGRSLAIRELDAGSDNAAEIEINNLS 64

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
           +  +D ERFGI  V SPRHAD+LL TGA+T  M   A + + + P PK  ++ G     G
Sbjct: 65  NAYYDVERFGISFVASPRHADVLLVTGAITCNMAIAAQKTYDAMPSPKFVVAVGDDACDG 124

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
           GI+   Y V GG D I PVD+ IPG PP P   L G    +    ++ 
Sbjct: 125 GIYKGTYAVLGGADAIFPVDLKIPGNPPAPIQILTGLLALMRSAGKRT 172


>UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 Tax=Halobacteriaceae
           RepID=B0R3U2_HALS3
          Length = 235

 Score =  183 bits (464), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 5/180 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADI 81
           I +     +  ++ S  ++ +  G    C IE+  T S   D +RF       SPR AD+
Sbjct: 47  ILTKFDKFMNWVRGS-SMFMLQFG-IACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADV 104

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G +         R +   P+PK  ++ G C  SGG F + Y V  G ++++PVD++
Sbjct: 105 MIVPGTIVSKFAPRMKRVYDQMPEPKFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIH 164

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA--EILHGDMVQPLRVKVDREA 199
           IPGCPP P A +YG A     +     +    +  E     ++   ++V  L   +D E+
Sbjct: 165 IPGCPPRPEALVYGVAKLQERIANGESSPVTVKPYELEEFGDLERDEIVDKLAADIDEES 224


>UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax=Bacteria
           RepID=NUOB2_OPITP
          Length = 191

 Score =  182 bits (463), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           M +L+     +   +P  V +     K   L  + R+  ++ +  G    C IE+ A   
Sbjct: 14  MPSLVAATGPSTPEIPPEVSQIARFAKLDDLLALGRANSLWPLTFG-LACCAIEMMAAGM 72

Query: 61  PLFDAERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
             FD  RFG +   PSPR AD+++  G V + M       +    +PK  I+ G C  SG
Sbjct: 73  ARFDISRFGAEVFRPSPRQADVMIVAGTVNKKMAPAVKLLYDQMLEPKWVIAMGQCAISG 132

Query: 120 GIFH--DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           G F     Y V  G D++ PVDVY+PGCPP P A + G       +  K  
Sbjct: 133 GPFKYPGQYAVVEGVDQLFPVDVYVPGCPPRPEALIEGILKLEEKITGKRR 183


>UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd subunit n=1
           Tax=uncultured marine microorganism HF4000_APKG10H11
           RepID=B3TC56_9ZZZZ
          Length = 182

 Score =  182 bits (463), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKI-----KRSAYVYRVDCGGCNGCEIEI 55
           M N+L P     I   +    ++A  K  L+KK+     K S +V  +  G    C  E 
Sbjct: 5   MKNIL-PDGTKTIVQDIVDGVNVAIKKVPLVKKLITWGRKNSLWVVHLTTG---CCSPEF 60

Query: 56  FATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGAC 115
            A     +D ERFG  V+ + R  DIL+  G V   M     R +   PDPK  I+ G C
Sbjct: 61  AALAGAGYDMERFGPLVMAAMRQCDILIIEGQVADKMAEVVKRTYDQMPDPKYVIAVGNC 120

Query: 116 GNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
             SGG + D Y +  G DKI+PVDVY+PGCPP P   +    +    ++++   R  
Sbjct: 121 AISGGFYWDSYSMVMGIDKIIPVDVYVPGCPPRPEDWIDAIRLVQTRMDKEGLDRER 177


>UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GAA3_9ACTN
          Length = 228

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            +S ++   D   CNGC+IE+  ++ PL+D ERFGI    +P+HADI L TG+V      
Sbjct: 5   SKSPWLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINTGNPKHADIFLVTGSVNAQNIE 64

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
                +    +PK+ ++ G C  +GG+F D Y V GG DK +PVDVY PGC   P   + 
Sbjct: 65  VVRHIYDQMLEPKVVVACGICACTGGVFRDCYNVIGGVDKAIPVDVYAPGCAVRPETIID 124

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQP 190
               A+ +L++K      G+    PA      ++  
Sbjct: 125 AVLKAVEILDEKAKLMAAGKD---PATAPRKGLLPR 157


>UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=7 Tax=Trypanosomatidae RepID=NDUS7_TRYBB
          Length = 202

 Score =  181 bits (459), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 12  GIPVPMTVDESIASMKASLLKK-IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI 70
           G   P    +        L +  +  S +       G   C +E+    +  +D +RFGI
Sbjct: 41  GTSKPNNALQYAQMTLHDLTEWCLAYSPWPLTF---GLACCAVEMMHAYASRYDLDRFGI 97

Query: 71  KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
              P+PR A+I++ +G VT  M       +    +PK  IS G+C N GG +H  Y V  
Sbjct: 98  VPRPTPRQAEIIIVSGTVTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLR 157

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           G ++ +PVD +IPGCPP+  + ++        + 
Sbjct: 158 GCERAIPVDFWIPGCPPSAESLVFCLHTLQKKIR 191


>UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=Thermoprotei
           RepID=A2BJ94_HYPBU
          Length = 209

 Score =  180 bits (457), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 25  SMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
            +K+ L   I  S +   +     + C  E  A   P +D+ER G      PR+ ++LL 
Sbjct: 32  PIKSLLDWGISFSLWPVHLTT---SCCGAEFAAVYDPKYDSERLGSLPFTHPRNTNVLLV 88

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            G +TR M   A   W+  P PK  I+ GAC  +GGIF++ Y +    ++I+PVD Y+PG
Sbjct: 89  EGTLTRKMARAARLVWEQMPWPKFVIAMGACAITGGIFYNSYNIVR-VNQILPVDYYVPG 147

Query: 145 CPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAG 204
           CPPTP A           + +          + +P +I     ++ L      +ARR   
Sbjct: 148 CPPTPEAVANALIKLQEKVRK---------GEWKPRDIEDKKFLEELMAPHYEKARRHLE 198

Query: 205 YRYGRQIADD 214
                Q  + 
Sbjct: 199 LLARTQRTER 208


>UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=Sphingobacteriales
           RepID=C7PSH0_CHIPD
          Length = 187

 Score =  179 bits (455), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 3/160 (1%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRH 78
            E   +     +  + R   ++ +     + C IE  AT++  +D  RFG + +  +PR 
Sbjct: 22  GEGFFATTFDQVIGLARKNSIWPLPF-ATSCCGIEFMATMASTYDMSRFGSERMAFTPRQ 80

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
            D+L+  G +++ M     + +    +P+  ++ GAC +SGG+F D Y V  G D+++PV
Sbjct: 81  CDLLMVMGTISKKMAPVLRQVYLQMAEPRWVVAVGACASSGGVF-DTYSVLQGIDQVIPV 139

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           DVY+PGCPP P A + GF     L+ Q+   R   +  ++
Sbjct: 140 DVYVPGCPPRPEAIIDGFMRVQDLVGQESLRRRHSDKYKE 179


>UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Proteobacteria RepID=Q12F15_POLSJ
          Length = 181

 Score =  179 bits (455), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/162 (38%), Positives = 86/162 (53%), Gaps = 3/162 (1%)

Query: 14  PVPMTVDES---IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI 70
           P P   D     I  +   +L  + ++  +  VD G CNGCE+EI A  +P ++ E  GI
Sbjct: 17  PAPGIDDAQRTAIERIHRDILLILGQALTIRAVDAGSCNGCELEIHALNNPYYNIEGLGI 76

Query: 71  KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
           K V SPRHAD+LL TG V+R M     R + + P+PK+ ++ G CG +GGIF D Y   G
Sbjct: 77  KFVASPRHADMLLVTGPVSRHMDEALRRTYDATPEPKLVVAVGDCGCTGGIFGDSYASCG 136

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
               ++PVDV +PGCPP P   L G   A+           P
Sbjct: 137 RVANVIPVDVTVPGCPPPPIEILRGILTAVRQRRPGTAGDNP 178


>UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGC1_9EURY
          Length = 172

 Score =  179 bits (454), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 2/143 (1%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHADIL 82
           A    + +    RS  ++ +  G  + C IE+    +   DA+R G+     SPR +D++
Sbjct: 20  AEKFINTVLNWGRSNSLWPLTFG-TSCCAIEMMTFGATKVDADRLGVLFNGDSPRQSDLI 78

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           L +G +T+ M    L  ++  PDPK  I+ GAC  SGG++HD Y    G D+I+PVD +I
Sbjct: 79  LVSGTITKKMARRLLNVYEQIPDPKYVIAVGACNVSGGLYHDSYNTIEGIDRIMPVDAFI 138

Query: 143 PGCPPTPAATLYGFAMALGLLEQ 165
           PGCPP P   L    +   L+++
Sbjct: 139 PGCPPRPEEFLDAVRVLQKLIKE 161


>UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea RepID=A0B811_METTP
          Length = 190

 Score =  179 bits (454), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 28/189 (14%)

Query: 10  ANGIPVPMTVDESIASMK--------------------------ASLLKKIKRSAYVYRV 43
           ++ IPVP+ +DE I                               ++L   ++++  + +
Sbjct: 4   SDVIPVPVAIDEEIEKWTIWGRPVMDVWFTTTEKIHQIIQMGPIKNVLNWGRKNSLWFLM 63

Query: 44  DCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSA 103
              GC  C +E+     P +D +RFGI    +PR AD+++ +G +TR         W+  
Sbjct: 64  QPMGC--CGVEMLVFGCPHYDCDRFGIIPRATPRQADVMIISGYITRKYLPAIKNLWEQM 121

Query: 104 PDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            +PK CI+ G C  SGG F+D Y +   T    P+DVY+PGCPP P   + GF      +
Sbjct: 122 LEPKWCIAVGECAISGGPFYDSYNIIQNTSDFFPIDVYVPGCPPRPEQFIKGFVELQEKI 181

Query: 164 EQKIHARGP 172
           +Q+   RG 
Sbjct: 182 KQRKDKRGY 190


>UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=cellular organisms
           RepID=NUOB_LEPBA
          Length = 186

 Score =  179 bits (454), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHAD 80
            +A++   +      S + Y         C IE  +T    +D  RFG +    SPR AD
Sbjct: 19  QVATLDNVVQWGQSFSLWPYPFAT---ACCGIEYMSTACADYDIARFGAERPSFSPRQAD 75

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           ++L  G +T  M     + +    +PK  IS GAC +SGG+FH  Y V  G D+I+PVDV
Sbjct: 76  MILVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDV 134

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMV 188
           Y+PGCPP P A L         ++ +       E+  +  EI   +  
Sbjct: 135 YVPGCPPRPEAILDALVKLQKKVQSQGLEARRQEVMRKIEEINERNKP 182


>UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria RepID=A3THJ2_9MICO
          Length = 198

 Score =  179 bits (453), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRAMRS 94
           R A ++    G    C IE+ A  +P +D  RFG++    +PR AD+++  G V+  M  
Sbjct: 24  RKASIWPATFG-LACCAIEMMAVGTPDYDIARFGMERFSATPRQADLMIVAGRVSNKMAP 82

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
              + +   P+PK  IS G C +SGG+F + Y +  G D I+PVD+Y+PGCPP P   L 
Sbjct: 83  VVRQVYDQMPNPKWVISMGVCASSGGMF-NNYAIVQGVDHIIPVDIYLPGCPPRPEMLLN 141

Query: 155 GFAMALGLLEQKIHA 169
                   ++     
Sbjct: 142 AIIELHDQIQNSKLG 156


>UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=Thermoprotei
           RepID=A1RZ48_THEPD
          Length = 171

 Score =  179 bits (453), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 1   MSNLLGPRDANGI--PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAT 58
           MS  LG      +           +       L+    +  ++ V     + C  E  AT
Sbjct: 1   MSCPLGFVMVGRLEESARKAAQWLVEKTPIRSLRDWAITFSLWPVHF-TTSCCGAEFAAT 59

Query: 59  LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
            +P FDAERFG     SPR  ++++  G +T+ M   A   +   P PK  I+ GAC   
Sbjct: 60  SAPRFDAERFGFLPFNSPRQTNLMVIEGTLTKKMGEAAKIVYDQMPWPKFVIAMGACAID 119

Query: 119 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           GG+F++ Y +    D I+PV+ +IPGCPP P A      M    + +
Sbjct: 120 GGLFYNSYNIVRPKD-ILPVEYFIPGCPPRPEAVAQAIIMLQEKVRK 165


>UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=Bacteria
           RepID=NUOB1_OPITP
          Length = 171

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK- 71
           +     ++  I   KA  +    R+  ++ +  G    C IE+    +  FD  RFG + 
Sbjct: 8   LTYSSAIEGGIVVSKADAVINWIRTNSMWPMPMG-LACCAIELMQVGNGRFDIARFGAEV 66

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
           +  SPR +D ++  G+VT  M     R +     PK  I+ GAC +SGG++   Y    G
Sbjct: 67  MRFSPRQSDCMIVAGSVTYKMAPQIRRIYDQMMSPKWVIAMGACASSGGMYR-SYAHMQG 125

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
            D+I+PVDVYI GCPP P   L         +  +   +
Sbjct: 126 VDRILPVDVYISGCPPRPEGILDALMKLQAKIRTERAGQ 164


>UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=Bacteria
           RepID=NUOB_BLOPB
          Length = 236

 Score =  177 bits (448), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 3/138 (2%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRA 91
              R   ++  + G  + C +E+    + + D  RFG + +  SPR AD ++  G     
Sbjct: 52  NWGRGNSLWPYNFG-LSCCYVEMTTAFTAIHDVARFGSEVLRASPRQADFMVIAGTPFLK 110

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M     R +    +PK  IS GAC NSGG++ D+Y V  G DK +PVD+YIPGCPP P A
Sbjct: 111 MVPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDLYIPGCPPRPEA 169

Query: 152 TLYGFAMALGLLEQKIHA 169
            + G  +    + ++   
Sbjct: 170 YIQGLLLLKKSINEERRP 187


>UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=Nitrosopumilus
           maritimus SCM1 RepID=A9A345_NITMS
          Length = 174

 Score =  176 bits (447), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 6/153 (3%)

Query: 21  ESIASMKASLLKKIKR--SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPR 77
           E              R  S +   ++      C +E  A  SP +D ERFGI     S R
Sbjct: 23  EKAIDKPLGYAINWGRIWSLWPVHIET---ACCSVEFGAASSPRYDVERFGIIEAFGSLR 79

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
             D+++  G +TR M       +   P+PK  I+ GAC  +GG++ D Y V  G D ++P
Sbjct: 80  QCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVIP 139

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           VDVY+PGCPP P   + G  +    +++    +
Sbjct: 140 VDVYVPGCPPRPETLIQGCILLQEKIKRMKARK 172


>UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cystobacterineae
           RepID=NUOB_MYXXD
          Length = 187

 Score =  176 bits (447), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-V 73
              ++    + +   L    K S + Y         C +E  +  +   D  RFG +   
Sbjct: 14  RDESMGWLQSIVSKGLGWARKYSLFTYPYAT---ACCGMEYMSVAASRHDISRFGAEFPR 70

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR AD+L+  G +         R ++   +PK  +++G C +SGG F+D Y V  G D
Sbjct: 71  FSPRQADLLMVVGTINLKQAPILKRVYEQMAEPKWVVAFGVCASSGG-FYDNYAVLQGID 129

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
           +I+PVDVYIPGCPP P   L G  +    +  ++H R     +  P    H
Sbjct: 130 RIIPVDVYIPGCPPRPEQVLDGLMLLQDKIGNQVH-RIAEREEANPTAARH 179


>UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Desulfurococcus
           kamchatkensis 1221n RepID=B8D5A0_DESK1
          Length = 337

 Score =  176 bits (447), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 80/198 (40%), Gaps = 7/198 (3%)

Query: 31  LKKIKRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVT 89
                RS ++       C+ C  +E    +    D ER+G    PSPR +D+ +  G +T
Sbjct: 7   RWAYARSLWMIHY----CSACGAVEFPPLVMAPLDWERYGYMPTPSPRQSDLYIGMGYLT 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
           +      L  ++  P+PK+ ++   C ++GG + D Y  +   D  + V+ ++PGC P P
Sbjct: 63  KKTVKLVLNMYRQMPEPKLVLAGCNCTSTGGPYWDSYATYKRLDDFIEVEGWVPGCMPMP 122

Query: 150 AATLYGFAMALGLLEQKIHARGPGELDEQPAEI--LHGDMVQPLRVKVDREARRLAGYRY 207
              L         L ++       ++     +      ++ +  R + + + +  +    
Sbjct: 123 DDYLSMIEYVRKDLGKRPLNAYVSKIKPDAFKKISEWEELEKQWRKEYEEKIKEDSSKPV 182

Query: 208 GRQIADDYLTQLGQGEEQ 225
             +  + Y +   + E+ 
Sbjct: 183 SYEFKETYPSCYEKDEKS 200


>UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=Proteobacteria
           RepID=NUOB2_RHOS1
          Length = 205

 Score =  176 bits (446), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 9/201 (4%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           MS  +G R     P        + +    L+    R   ++  + G  + C +E+   L+
Sbjct: 1   MSWTIG-RPDAEAPEDRMAASHLFTRLDDLVAW-SRKHSLWPFNFG-LSCCYVEMATALT 57

Query: 61  PLFDAERFGIKVVPS-PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
           P++D  RFG +V+ S PR AD+L+ +G V R M  P  R +    +P+  IS GAC NSG
Sbjct: 58  PVYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSG 117

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
           G++ D+Y V  G D  +PVDVY+PGCPP P A +    +    +  +        + E  
Sbjct: 118 GMY-DIYSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKIATEARPLQI-RMGETG 175

Query: 180 AEILHGDMVQPLRVKVDREAR 200
                  +    R    REAR
Sbjct: 176 PARPFDPIP---RRDALREAR 193


>UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Proteobacteria RepID=D0L1N9_HALNC
          Length = 274

 Score =  176 bits (445), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 89/164 (54%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
            D + +  P T D+ +       L    RS ++  VD G CNGCE EI A L+P ++  R
Sbjct: 108 ADLSRLARPATPDKKLEEKWQKSLAGFGRSLHIRHVDAGSCNGCESEISALLNPFYNLHR 167

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
            G+   PSPR AD+LL TG VT  MR P LR +++ P+P+  ++ G C   GG     Y 
Sbjct: 168 LGVFFTPSPRFADLLLVTGPVTEVMREPLLRTFEAMPEPRWVMALGTCATGGGTNGGGYA 227

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
              G D I+PVD+++PGCPP PAA +    + L    Q++H   
Sbjct: 228 CHQGLDGILPVDIWLPGCPPNPAAIIEALLVLLDRRPQQVHGGR 271


>UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI98_9EURY
          Length = 206

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRA 91
           K  RS  ++ +  G    C IE+    +   DAER G      +PR  D+++  G VT++
Sbjct: 52  KWSRSNSMWPMLFG-LACCAIELMDFGAARIDAERKGYLLFRGTPRQCDVMIVAGWVTKS 110

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M     R ++    PK  ++YG C  +GG +++ Y +  G D+++PVDVY  GCPP P  
Sbjct: 111 MVPRVKRLYEQMASPKYVVAYGECATAGGPWYESYNIVKGIDQVLPVDVYAIGCPPKPEN 170

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPL 191
                      L++K+  +  G  +   AE       + +
Sbjct: 171 LFAALM----KLQEKVGGKVAGSEERTIAENPRRAENERV 206


>UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_SALRD
          Length = 213

 Score =  175 bits (443), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 3/185 (1%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPS 75
            T  +   + +        RS  +  +  G    C IE+     P +D+ RFG + +  S
Sbjct: 6   GTNGQGFFTTRVDTFLNWARSNSLMPMPMG-LACCAIEMMGFAGPKYDSARFGSEAMRFS 64

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G  +  M     R W    DPK CI+ GAC ++GG+ H  Y V  G D  
Sbjct: 65  PRQADLMIVAGWCSYKMSHAIRRVWDQMGDPKWCIAMGACASTGGM-HRCYGVVQGVDNF 123

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
           +PVDVYI GCPP P + L+        +  +       E  +                  
Sbjct: 124 LPVDVYISGCPPRPESVLHALMDIQEKIRNEYSVVQDYEFGKARERAPIMPENTNRFPGQ 183

Query: 196 DREAR 200
             + +
Sbjct: 184 LEKPK 188


>UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_FRAAA
          Length = 281

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 9/176 (5%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADI 81
           + +    L    +RS  ++    G    C IE+ +T +  +D  RFG++    SPR AD+
Sbjct: 12  LLASVEKLANWSRRS-SLWPATFG-LACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADL 69

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G V++ M     + +   P+PK  +S G C +SGG+F + Y +  G D IVPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMF-NNYAIVQGVDHIVPVDMY 128

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           +PGCPP P   +         +       GP        E       +P+ V   R
Sbjct: 129 LPGCPPRPEMLMDAIIKLHEKI-----LAGPVTGRTAHTESGSSPYPKPIDVATAR 179


>UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_SORC5
          Length = 194

 Score =  174 bits (442), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADIL 82
           A+ +   L    +   +++        C +E  A  SP FD  RFG +    SPR AD+L
Sbjct: 22  ATTRVDALLNWAKKYSLFQYPF-VTACCGMEYMAMASPRFDMARFGAEVPRFSPRQADLL 80

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
              G +++       R ++   DPK  +++G C + GG F+D Y    G DK++P DVY+
Sbjct: 81  WVVGTISQRQAPALKRIYEQMADPKWVLAFGTCASCGG-FYDNYTTVAGIDKVIPCDVYV 139

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE 181
           PGCPP P A L G  +    + +        +  E PA+
Sbjct: 140 PGCPPRPEAVLDGLMLLQDKIARGDRTPAIVKPREDPAQ 178


>UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Aquificales
           RepID=B2V8R1_SULSY
          Length = 173

 Score =  174 bits (442), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 4/148 (2%)

Query: 19  VDESIASMKASLLKKIKR----SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            DE++  +   L +KI +    S  +  VD G CN CE EI A  +P +D ERFG+K V 
Sbjct: 21  RDENVEILGKQLKEKIDKYFQGSFAIREVDSGSCNACEYEISALSNPYYDIERFGVKFVA 80

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SP+HAD ++ TG +TR M    ++A+++ P+PK  I+ G C   GG F   Y V  G   
Sbjct: 81  SPKHADAIMITGCLTRNMYEAVMKAYENVPNPKFIIAVGDCALDGGTFKGSYAVMDGIKD 140

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGL 162
            +P+D++I GCPP P   + G  + L  
Sbjct: 141 KLPIDIWIKGCPPEPIDIISGLLILLNK 168


>UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=C5CEV5_KOSOT
          Length = 137

 Score =  174 bits (442), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 77/132 (58%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           K +KRS +V+ V    CN C+IEI   L+P +D ERFGIK+V S RHAD+LL TG     
Sbjct: 6   KILKRSLWVFHVSASPCNNCDIEILDMLTPRYDLERFGIKLVGSVRHADVLLVTGMGGCK 65

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           +    +R +  AP P   I+ G C  +G  F + Y   G  D+ VPVD+YIPGCPP P  
Sbjct: 66  VSERVIRIYNQAPKPVFVIAVGTCPVAGATFKESYTRCGPLDRFVPVDLYIPGCPPKPET 125

Query: 152 TLYGFAMALGLL 163
            + G +  LG L
Sbjct: 126 MIAGLSELLGRL 137


>UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=Firmicutes
           RepID=NUOB_DESRM
          Length = 196

 Score =  174 bits (441), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 15  VPMTVDESIASM---KASLLKKIKRSAYVYRVDCGGCNGCEIE-IFATLSPLFDAERFGI 70
            P  + E   ++       L  + R+  ++ +  G    C IE + A     FD  RFG 
Sbjct: 32  EPAVIGEVARTVSVGPLEKLLNLARANSLWPMGFG-LACCAIEGLMAANMARFDLARFGY 90

Query: 71  K-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
           + +  SPR AD++L  G VT+      +R ++   +PK  I+ G+C  SGG F D Y V 
Sbjct: 91  EVMRASPRQADVMLVCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPFVDSYSVV 150

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            G DK++PVDVYIPGC P P A ++GF      +
Sbjct: 151 PGVDKLIPVDVYIPGCAPRPDAVIHGFMKLKEKI 184


>UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Tax=Thaumarchaeota
           RepID=A0RY66_CENSY
          Length = 160

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 21  ESIASMKASLLKKIKR--SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPR 77
           E              R  S +   ++      C +E  A   P +D ERFGI     S R
Sbjct: 9   EKAIDKPLGYAINWGRIWSLWPVHIET---ACCSVEFGAASGPKYDVERFGIIEAFGSLR 65

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
             D+++  G +TR M       +   P+PK  I+ GAC  +GG++ D Y V  G D ++P
Sbjct: 66  QCDLIVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLP 125

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           VDVY+PGCPP P   + G  +    +++    +  
Sbjct: 126 VDVYVPGCPPRPETLIQGCMLLQEKIKRMRARKEV 160


>UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Proteobacteria
           RepID=NUOB_SHEWM
          Length = 213

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 90/195 (46%), Gaps = 8/195 (4%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
             +   +   V++++   +   L    RS  ++  + G  + C +E+  + +   D  RF
Sbjct: 12  PTSTQTMQEVVEKNLLVTRLEDLVAWGRSNSLWPFNFG-LSCCYVEMATSFTSRHDIARF 70

Query: 69  GIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
           G + +  +PR AD+++ +G V   M       +    +PK  I  G+C NSGG++ D+Y 
Sbjct: 71  GSEVIRATPREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVICMGSCANSGGMY-DVYS 129

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM 187
           V  G D+ +P+D+Y+PGCPP P A +YG  +    +        P +       I   + 
Sbjct: 130 VVQGADRFLPIDLYVPGCPPRPEALMYGLTLLQEAI----KDGAPRQARPLNRTI-TPEE 184

Query: 188 VQPLRVKVDREARRL 202
           +Q    +  R+ +  
Sbjct: 185 IQAFACRNMRDEKHE 199


>UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=2 Tax=Bacteria
           RepID=UPI00016C3AA7
          Length = 201

 Score =  174 bits (440), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 16  PMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VV 73
              + + + +    L    ++ S +           C IE+ AT S  +D  RFG + + 
Sbjct: 4   TNMLPDFMIAPLDYLANMARKHSLWPMPFAT---ACCGIELMATASSRYDIARFGSEAMR 60

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR  D+++  G V   M     R W   P+PK CIS GAC +SGG+F D Y V  G D
Sbjct: 61  FSPRQCDVMIVAGRVAMKMVPVMQRIWLQMPEPKWCISMGACASSGGVF-DTYAVVQGID 119

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           + +PVDVY+PGCPP P   +         +++
Sbjct: 120 RFIPVDVYVPGCPPRPEQLIRAVLDLQEKIQK 151


>UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW47_ACICJ
          Length = 264

 Score =  172 bits (437), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 60/144 (41%), Positives = 81/144 (56%), Gaps = 1/144 (0%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           +  +RS +V  VD G CNGCE E+ A  +P ++  R GI   PSPR AD+LL TG VTRA
Sbjct: 122 RGFRRSLHVRHVDAGSCNGCESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRA 181

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M  P  R W++ P P+  ++ G C  SGGI         G ++ +PVD+Y+PGCPP PAA
Sbjct: 182 MLEPLRRTWEAMPAPRWVMASGTCAVSGGIAPGGP-CLSGLEEALPVDLYLPGCPPNPAA 240

Query: 152 TLYGFAMALGLLEQKIHARGPGEL 175
            +    M LG   Q++        
Sbjct: 241 IIEALLMFLGRRAQRVRGGRIDGE 264


>UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=1 Tax=uncultured
           methanogenic archaeon RC-I RepID=Q0W6T1_UNCMA
          Length = 135

 Score =  171 bits (433), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/134 (47%), Positives = 84/134 (62%), Gaps = 2/134 (1%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +  IKRS +VY    GGC GC+IE+ A++ P +D ER G+++VPSPR+AD+LL TG V  
Sbjct: 1   MNMIKRSPWVYHAHAGGCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPL 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHD--LYCVWGGTDKIVPVDVYIPGCPPT 148
             +    R +   P+PK  I+ GACG S G+F D   Y + G  DKI+PVDV IPGCPP 
Sbjct: 61  HTKPFLERVYAQTPEPKRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPK 120

Query: 149 PAATLYGFAMALGL 162
           P A + G    L +
Sbjct: 121 PEAIMEGIIKVLRM 134


>UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit n=4 Tax=Archaea
           RepID=B6YWP9_THEON
          Length = 191

 Score =  170 bits (431), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 11/159 (6%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
            +K S +V+ ++ G CNGC+IEI    +P  D ER GIK+V SPRHAD + FTG +TR  
Sbjct: 1   MVKNSLWVFHLNSGSCNGCDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITREC 60

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI-----------VPVDVY 141
               + A ++ P+PK+ ++ GAC   GGI++D Y V GG  ++            P  V+
Sbjct: 61  LPKVIDALKAVPEPKVVLAIGACACGGGIWYDTYSVIGGVKELYRILKEEYNMEPPATVF 120

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           IPGCPP P A +YG A+A G+LE K       E +E  A
Sbjct: 121 IPGCPPKPEAIIYGVAVASGMLESKQKKTVYVEPEESVA 159


>UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteria
           RepID=Q2T5T7_BURTA
          Length = 174

 Score =  170 bits (430), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 1/158 (0%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           P +      P         ++  +L  + R+  +  +D G CNGCE+E+ A  +P ++ E
Sbjct: 14  PDEPAPAGEPA-WQRDAQPIRQEILDILGRALCIRAIDAGSCNGCELELNALGNPYYNIE 72

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
             GIK V SPRHAD+LL TG +T  MR     A+ + P PK+ ++ G C  +GG+F   Y
Sbjct: 73  GLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVVAAGDCACTGGVFAGSY 132

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
            V G  + +VPVDV I GCPP P   L G   AL  + 
Sbjct: 133 AVCGPVETLVPVDVAIAGCPPRPIDLLRGIRGALERVR 170


>UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Epsilonproteobacteria RepID=B9L626_NAUPA
          Length = 157

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           +  +         +S ++     G    C +E+ A + P +D ER+G  + P+PR ADI+
Sbjct: 1   MLKVLDFFNYARSKSPWIVHFCSG---CCSLEMLAAMGPRYDWERYGYIMTPTPRQADIM 57

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
             TG V++ +    LR ++  P+P+  ++ GAC   GG ++D   V     +I+P DV++
Sbjct: 58  FITGLVSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSVSVIKNMTEILPADVFV 117

Query: 143 PGCPPTPAATLYGFAMALGLLEQ 165
            GCPP P A + G       +++
Sbjct: 118 AGCPPRPEAIIAGLEELKEKIKR 140


>UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarchaeota
           RepID=Y516_METJA
          Length = 148

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/142 (42%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           KRS +V  V+ GGCNGC+IEI A L+P +D E++GI V  +PR AD+LL TG VT     
Sbjct: 8   KRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAE 67

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
                ++  P+PKI ++ GAC  SGGIF + + V GG DK++PVD  IPGCPP P+  + 
Sbjct: 68  RLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEIIE 126

Query: 155 GFAMALGLLEQKIHARGPGELD 176
                          R   + +
Sbjct: 127 TILKVAPKAIAMREKRLKNKDE 148


>UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfitobacterium
           hafniense RepID=Q24ST9_DESHY
          Length = 155

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 81/133 (60%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
             + L+ +++S ++  +DCG CNGC+ E+ A L+P++D +RFG+  V SPRHADIL+ TG
Sbjct: 22  GEAHLRSLRQSWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTG 81

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
            ++  +   AL  ++  P+PK  I+ G C   GG+F + Y    G  + +PVD+ IPGCP
Sbjct: 82  PMSTHLIQAALATYEGTPNPKRIIAVGDCALDGGMFKEAYAAHNGVGEALPVDIKIPGCP 141

Query: 147 PTPAATLYGFAMA 159
           P+P   L      
Sbjct: 142 PSPDELLKVLLQL 154


>UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=Flavobacteriaceae
           RepID=C6X0Z2_FLAB3
          Length = 185

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 3/159 (1%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-V 72
           P      E   + K S +  + R   ++ +     + C IE  A L+P +DA RFG++  
Sbjct: 14  PPEGFEGEGFFATKLSSVIGMARKYSLWPLPF-ATSCCGIEFMAVLNPTYDASRFGMERN 72

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
             SPR AD+L+  G +++ +     + +    +P+  ++ GAC +SGGIF D Y V  G 
Sbjct: 73  SFSPRQADMLMVCGTISKKLGPVLKQVYTQMAEPRWVVAVGACASSGGIF-DTYSVLQGI 131

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           DKI+PVDVY+PGCPP P   + G      L E +   R 
Sbjct: 132 DKIIPVDVYVPGCPPRPEQIIEGVMQVQALCEGESIRRR 170


>UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea RepID=B1L7S0_KORCO
          Length = 174

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADI 81
           +   ++      I  S +           C  E  A+ +P +DAER G       R  ++
Sbjct: 27  NKRPIRDIRDWGIAFSLWPVHFTT---ACCGAEFAASAAPKYDAERLGFLPFIGIRQCNV 83

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           L   G +++ M   A+  ++  P+PK  I  GAC   GGIF + Y +    D I+PV+V+
Sbjct: 84  LFIEGTLSKKMAEAAIWVYEQMPEPKFVIGMGACAIDGGIFWNSYNIVRPMD-ILPVNVF 142

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
           IPGCPP P A      M    + +    +   
Sbjct: 143 IPGCPPRPEAVAQAIIMLQRKIRKGELVKYED 174


>UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Epsilonproteobacteria
           RepID=A6Q6W5_SULNB
          Length = 168

 Score =  167 bits (422), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 11  NGIPVPMTVDESIASMKASLLKKIKR----SAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
             +     +D+ + ++K  + + +K+    S  +  VD G CN CE E  A  +P +D E
Sbjct: 12  GILTEDTALDKELEAIKREIKENVKKKFAGSLAIRMVDSGSCNACEAECNALSNPYYDLE 71

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           R GI  V SPRHAD++L  G +T  M    L A++  P+PK  I+ GAC      F   +
Sbjct: 72  RLGIYFVASPRHADVMLLNGLMTFNMTPHVLDAYKQIPEPKWVITLGACPVMEAPFEKTF 131

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            V       +PV  +IPGCPP P   + G    L  +
Sbjct: 132 AVKAPAADHLPVAHHIPGCPPEPLEIIRGLLEFLKKI 168


>UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (MbxJ) n=11
           Tax=cellular organisms RepID=C5A4Q2_THEGJ
          Length = 194

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 7/185 (3%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +   L +  ++ +      C GC G  IE+    +  +D ERFGI   P+PR AD+ L
Sbjct: 15  FKLFEPLFRWARKKSLWIVAFCTGCGG--IEMPPLATARYDFERFGIMPNPAPRMADLFL 72

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG VT       +  ++   DPK  +++G+C  +GG++ D Y V    DK +P+DV I 
Sbjct: 73  ITGYVTPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIA 132

Query: 144 GCPPTPAATLYGFAMALGLLEQKIHA--RGPGELDEQPAEILHGDMVQPLRVKVDREARR 201
           GC P P A + G    +  +E       +   E  E   +       +  R   +++A+R
Sbjct: 133 GCMPRPEAVMDGIMEIMRKIENGEADGWKRYRENYEWYRKNQDELFGEGWR---EKDAKR 189

Query: 202 LAGYR 206
              + 
Sbjct: 190 WLAWL 194


>UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2
           Tax=Proteobacteria RepID=Q21TB3_RHOFD
          Length = 254

 Score =  163 bits (413), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +  +L K+  RS  +  V  GGC+GCE+EI A  +  FD  R+GI +V SPRHAD L+
Sbjct: 114 IKVSKALHKRFGRSLKLRSVSAGGCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALV 173

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            +G +TR M       W + P+PK+ I+ GAC  SGG+F D   +           +Y+P
Sbjct: 174 LSGPITRNMAQALQICWDAIPEPKLVIAVGACAISGGVFADSDALDRQFLDNFKPALYVP 233

Query: 144 GCPPTPAATLYGFAMALGL 162
           GCP  P   + G    LG+
Sbjct: 234 GCPAHPLTFISGIMDLLGI 252


>UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 Tax=Magnetococcus
           sp. MC-1 RepID=A0L9R6_MAGSM
          Length = 213

 Score =  163 bits (413), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
               +   E +  ++   L    RS  ++ +  G      IE+   ++P FDA R+G++ 
Sbjct: 30  ATPTVQTGEYLQIVED--LFNWARSNSIWVLGFG-TGCGAIEMRPLMTPRFDAYRYGVQW 86

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
             +PR +++ + +G ++       +RA++    PK  +  G+C  +GG++ D Y      
Sbjct: 87  RATPRQSNLFIVSGYLSVKTLKRVVRAYEQMQSPKYVMGLGSCTINGGMYWDSYNTIKQL 146

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           D  +PVD+Y+ GC P P A L G   AL  + ++    G     E+
Sbjct: 147 DDYLPVDLYVTGCMPRPEALLSGI-EALKKIIREGRGEGANIYAER 191


>UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japonica Group
           RepID=C7IWD0_ORYSJ
          Length = 379

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 2/166 (1%)

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
              FD +R+G+    SPR AD++L  G VT  M    +R ++  P+PK  I+ GAC  +G
Sbjct: 150 GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 209

Query: 120 GIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           G+F  D Y    G DK++PVDVY+PGCPP P A +      LG L   + A      + +
Sbjct: 210 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLLG-LALNLRAYDFVSQEIR 268

Query: 179 PAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEE 224
            AE    +      + ++   R     +        +  +L +  E
Sbjct: 269 AAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEELIRVSE 314


>UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=1 Tax=Conexibacter woesei
           DSM 14684 RepID=UPI0001C31273
          Length = 229

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 4/166 (2%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPR 77
           V+E + +     +    R   ++    G    C IE+ +      D  RFG +    SPR
Sbjct: 44  VEERVLTTTLDKVTAWARGNSMFPATFG-LACCAIEMMSLPGARLDIGRFGFEAFRASPR 102

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+L+ +G V+  M     R +    +P+  IS GAC +S G+F + Y +    DK +P
Sbjct: 103 QADMLILSGRVSIKMAPIVRRIYDQMLEPRWAISMGACCSSMGVF-NNYALV-PADKFMP 160

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEIL 183
           +DV++PGCPP P A  +        +     A      +    E +
Sbjct: 161 IDVHVPGCPPRPEALAHAILKLRSKVHGNPPAGWRERYEAVGTEEV 206


>UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q6C2Q1_YARLI
          Length = 216

 Score =  160 bits (406), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           S++           P +  +   +   ++    ++    + V  G    C +E+    +P
Sbjct: 39  SSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQG-SFWPVTFG-LACCAVEMMHVSAP 96

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +D +R GI    SPR +DI++  G +T  M     + +   P+P+  IS G+C N GG 
Sbjct: 97  RYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSCANGGGY 156

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPT 148
           +H  Y V  G D+IVPV        P 
Sbjct: 157 YHFSYSVVRGCDRIVPVRRLRSRMSPH 183


>UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea
           RepID=Q64DY8_9ARCH
          Length = 788

 Score =  160 bits (406), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 13/178 (7%)

Query: 17  MTVDESIASMKASLLKKIKR-----SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK 71
              D +I  + + +   ++R     S +         + C +E+  T +  +D ER G  
Sbjct: 4   TEKDRNIRILHSGVFTPLRRWATKWSLWPCHFLT---SCCGVELAHTGACGYDMERLGTL 60

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
            +   R A+ ++  G +TR M       W+  PDPK     G CG  GGIF + Y +   
Sbjct: 61  NMGISRQANFIMVEGTITRKMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRP 120

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
           +D IVPVD +IPGCP TP + L G       +E     R    +  +  E+  GD  +
Sbjct: 121 SD-IVPVDFFIPGCPITPESLLRGVRAVQEKIE----GRDNTTIRFKHVELPSGDGEE 173


>UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=cellular
           organisms RepID=A9BJL8_PETMO
          Length = 195

 Score =  160 bits (404), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPR 77
           ++++I   +        +S ++       C GC  +E+  T++  FD ER G+  + +PR
Sbjct: 17  LNDTITFWEKIKNIFRGKSLWMLHY----CTGCGAVELPPTMTARFDMERLGMGPMATPR 72

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+LL TG ++       +  ++    PK  + +G+C  +GGI++D Y V    D  +P
Sbjct: 73  QADVLLITGYLSVKTLRRVIYTYEQMMTPKYLVGFGSCTINGGIYYDSYAVINRLDYYLP 132

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           VD+Y+ GC P P A +  F     ++ +
Sbjct: 133 VDLYVAGCMPRPEAIMNTFKTLENMITK 160


>UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=Staphylothermus
           marinus F1 RepID=A3DM92_STAMF
          Length = 179

 Score =  159 bits (403), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 27  KASLLKKIK-RSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
           K    + ++ RS ++       C+ C  IE+   +    DAER+GI   PSPR AD+L+ 
Sbjct: 8   KLGFAEWVRSRSIWMIHY----CSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVI 63

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            G VT+      +R +   P+P+  +    C  +GG++ D Y      D+ +PVDV++PG
Sbjct: 64  MGYVTKKTLKVLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPG 123

Query: 145 CPPTPAATLYGFAMALGLLEQ-KIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
           C P     L GF      + + +I    P E   +  E+++ ++   +R K+  + R
Sbjct: 124 CMPRAEDWLQGFLKLRKKISEGRIVNPRPVEEPGELEELIYREIE--MREKMMAKVR 178


>UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=Thermoproteaceae
           RepID=A4WJL4_PYRAR
          Length = 196

 Score =  157 bits (397), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A ++      ++ S +   +     + C +E+  T  P FDAER+G+    + R ++++L
Sbjct: 20  AKLEKIFNWGVRWSLWPVHLVT---SCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVIL 76

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
             G +TR M       ++  P+PK  ++ GAC   GG+F + Y V      +  VDVYI 
Sbjct: 77  VEGTITRKMAKVLKMVYEQMPEPKFVLAMGACAVRGGLFWNSYHVVQVDTVVP-VDVYIA 135

Query: 144 GCPPTPAATLYGFAMALGLLEQKI 167
           GCPPTP A +  F M    ++ K 
Sbjct: 136 GCPPTPEAVVRAFIMLHNKIKGKP 159


>UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=Acetobacter
           pasteurianus RepID=C7JEU9_ACEP3
          Length = 165

 Score =  156 bits (395), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/128 (42%), Positives = 73/128 (57%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           +    ++ VD GGC GC +E+ A     +D E  G   V SPR+AD+LL TGA+TRAM  
Sbjct: 25  RWPLLLFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAP 84

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
               AWQ+ P PK  I+ G+C   GG+F + Y V GG ++ V +D+ IPGCPP P   L 
Sbjct: 85  VLEAAWQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLN 144

Query: 155 GFAMALGL 162
           G     G 
Sbjct: 145 GLCSLFGK 152


>UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Desulfovibrio
           RepID=B8IYV4_DESDA
          Length = 254

 Score =  156 bits (394), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 73/128 (57%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            +RS  + +V   GCN CE +     + +FD  RFGI  V SPRHAD ++ TG V+  MR
Sbjct: 127 FRRSLKLRQVSAAGCNACEADCNVLGTLVFDLPRFGIDFVASPRHADGIVLTGPVSENMR 186

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
             A+  + + P+P++ ++ GAC  SGG+F D      G   I+PVD+++PGCPP P   L
Sbjct: 187 LAAIDTYNATPEPRLVVAVGACAISGGLFRDAPQCNNGIADILPVDLFVPGCPPNPWTIL 246

Query: 154 YGFAMALG 161
            G  M   
Sbjct: 247 DGLLMLRE 254


>UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=13 Tax=Bacteria
           RepID=B5E8B5_GEOBB
          Length = 332

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 4/178 (2%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-LFDAERFGIKVVPSPRHADILLF 84
           M+  + +       ++R++ G CNGC++E+  T +   FD E+ G +    P  ADILL 
Sbjct: 1   MQDQVKETPAEPVRLFRINTGSCNGCDVELAVTAAVDEFDVEQLGCRYTEEPHEADILLI 60

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
           TG +T   R+ ALR +  AP+ K+ ++ G C  SGG+F D Y V G   + +PVD+ +PG
Sbjct: 61  TGPLTVRARNEALRLYAEAPETKVTVAVGVCPVSGGVFRDSYAVDGPVQRYLPVDLNVPG 120

Query: 145 CPPTPAATLYGFAMALGLLEQKIHARGPG---ELDEQPAEILHGDMVQPLRVKVDREA 199
           CPP P A L G A A  L   +              +PA+          R+  D +A
Sbjct: 121 CPPRPQALLAGIAQARDLWRARSKGVDAVFAAPPLAKPADEPAQQFPIRGRMSFDPKA 178


>UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospirillum
           RepID=A3ETD3_9BACT
          Length = 169

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/125 (37%), Positives = 63/125 (50%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
             S  +  VD G CN CE+E+ A     +  ER GI+ V SPRHAD+LL TG V+  M  
Sbjct: 33  GGSLSIRHVDAGSCNACELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQMEQ 92

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
           P L   ++   PK  ++ G C   GG+F     V  G D + P    +PGCPP+P+  L 
Sbjct: 93  PLLDTHEAMASPKTVLAVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDILR 152

Query: 155 GFAMA 159
                
Sbjct: 153 ALRGL 157


>UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Actinomycetales RepID=A1SQ82_NOCSJ
          Length = 162

 Score =  154 bits (389), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 73/129 (56%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           +  S  +  VD G CNGCEIE+     P++DAER+G ++V SPRHAD++L TG VT  M 
Sbjct: 34  LAGSVQIRHVDAGSCNGCEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNML 93

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
            P  R  ++ P P++ ++ G C  + G F   Y V G     V VD+ +PGCPP PAA +
Sbjct: 94  EPLRRTVEATPRPRLVLAVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIV 153

Query: 154 YGFAMALGL 162
                  G 
Sbjct: 154 DALRRVTGR 162


>UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=Selaginella
           uncinata RepID=Q2WGH7_SELUN
          Length = 215

 Score =  153 bits (386), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 3/171 (1%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
           R   G+    T D  I +       + +  +        G + C  E    +    D++R
Sbjct: 28  RPTPGVDRAATPDSIIPTTPNDFTNRARLPSSRPPPY--GTSCCFTEFAPLIGSRSDSDR 85

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH-DLY 126
            G     SPR AD+++  G  T  M    +R+++  P+PK  I+ GAC  +GG+   D +
Sbjct: 86  HGSVPRSSPRQADLIITAGTATTKMAPSLVRSYEQTPEPKHAIAMGACTVTGGMLSTDPH 145

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
               G DK +P D Y PG PP P A +         + ++ +     +L E
Sbjct: 146 STVRGVDKSIPADTYPPGRPPKPEAIVDATIKPREKVSRETYDNYRDKLRE 196


>UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meiothermus silvanus
           DSM 9946 RepID=C1XWY8_9DEIN
          Length = 290

 Score =  152 bits (385), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 77/162 (47%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
           +     V  G     + E+    +P  D  RFG  VV SPRHAD LL TG V++ MR   
Sbjct: 127 TLAFREVSAGNTGLDDTEVALAGNPFHDMSRFGFSVVASPRHADALLVTGPVSQNMREAL 186

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
            R +Q+ P+PK  ++ G     G IF +   V GG D++VPVDVY+PG P  PA+ L+G 
Sbjct: 187 WRTYQATPEPKGVVAVGNEAIGGEIFAESAAVVGGVDQVVPVDVYVPGSPARPASILHGL 246

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDRE 198
            +  G  +Q +      E   Q      G      R +   E
Sbjct: 247 LLLSGQTQQVLVGGRLHEERTQVVSSEAGVEASSRRAERGEE 288


>UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus
           profundus DSM 5631 RepID=D2RET0_ARCPR
          Length = 709

 Score =  152 bits (383), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 10/233 (4%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           M      K   S +   +       C +E+    +  +DAER G       R  ++++  
Sbjct: 1   MLKEWGTKW--SLWPVHLVT---ACCGVELAHAYACGYDAERIGSLNYGICRQTNLIIVE 55

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           GA+TR M       W+  P+PK  I  GACG  GG+F + Y +    D +  VDV++PGC
Sbjct: 56  GAITRKMARVLRITWEQMPNPKFVIVMGACGIKGGLFKNSYHMVRPWDVVP-VDVFVPGC 114

Query: 146 PPTPAATLYGFAMALGLLEQKIHARGPGE--LDEQPAEILHGDMVQPLRVKVDREARRLA 203
           PPTP A + G       +E K       E  ++ +  ++     ++  RV+       + 
Sbjct: 115 PPTPEALIRGIVALQKKIEGKEDFDKFEEVSIEVEKGKVRKLPPLKEFRVENPAVVPNVE 174

Query: 204 GYRYGR-QIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHL-NHVVEEARI 254
             R    +  +D L        +   +   ++  R  EI++HL    V++  +
Sbjct: 175 RGRDDYAKTLEDVLGVRVYTVGKDHYYAFVDDVKRSAEILAHLGFDNVKDVNV 227


>UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermoplasmatales
           RepID=Q978D5_THEVO
          Length = 222

 Score =  151 bits (381), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP 76
            T D+ I ++K +     +RS +V+ +D G C  C +E  +  SP +DA R GI +V +P
Sbjct: 69  PTGDQRIFTIKKT-EDTFRRSFHVFPIDSGACGACNMEFLSIFSPQYDANRLGIFMVNTP 127

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           R+AD L+  G +T  M+    RA+++ P+PK+ I+ GAC  +GGI  +        D+  
Sbjct: 128 RYADALIVMGVMTPGMKEALDRAYEAMPEPKLVIAMGACAVTGGIMGE-----NPLDRE- 181

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
             +V I GCPP+P   +     A+    +
Sbjct: 182 KYNVEIAGCPPSPYTLIAALNAAMKDKRK 210


>UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=2
           Tax=Gluconacetobacter diazotrophicus PAl 5
           RepID=B5ZJ00_GLUDA
          Length = 166

 Score =  150 bits (378), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 71/128 (55%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            R   V+ V+ GGC GC +E+ A     +     GI  V +PR A++LL TG +TRAM  
Sbjct: 22  ARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAP 81

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
               AW + P+P+  ++ GAC   GG F + Y V GG +    +D+ +PGCPP+PAA L 
Sbjct: 82  VLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDMTVPGCPPSPAAILA 141

Query: 155 GFAMALGL 162
           G A  L  
Sbjct: 142 GLARVLER 149


>UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Metallosphaera sedula DSM 5348 RepID=A4YGN5_METS5
          Length = 203

 Score =  150 bits (378), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 72/152 (47%), Gaps = 8/152 (5%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
           PV     E++           KRS Y+Y +D G C GC +E+    SP +D  RFGI   
Sbjct: 60  PVFSPTGETLTPRVERSDVTFKRSFYLYPLDAGSCGGCNLELRLISSPQYDMTRFGIFFT 119

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            +P+HAD LL  G + + M     RA+   P PK+ I  G C  SGG+         G  
Sbjct: 120 NTPKHADALLIMGNLGKRMEEVIRRAYDVIPSPKLVILLGTCAISGGV--------TGIP 171

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
             +  DV +PGCPPTPA+ L     A G   +
Sbjct: 172 PDIRGDVIVPGCPPTPASILDALIKAKGGDRK 203


>UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarchaeota
           RepID=Y1363_METJA
          Length = 151

 Score =  149 bits (377), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 8/139 (5%)

Query: 35  KRSAYVYRVDCGGCNGCEIEI-FATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           K+  +V  V  GGCN C+IE+  A  SP +DAE++ + +  +PR ADIL+ TG VT+ + 
Sbjct: 11  KKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVA 70

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHD-------LYCVWGGTDKIVPVDVYIPGCP 146
               + ++  P+PK  ++ GAC   GG++ +          V G  + I+PVDV +PGC 
Sbjct: 71  ESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCA 130

Query: 147 PTPAATLYGFAMALGLLEQ 165
           P P   + G   AL  + +
Sbjct: 131 PRPEDIIAGIVKALPKVIE 149


>UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Euryarchaeota
           RepID=C5U7Y6_9EURY
          Length = 154

 Score =  149 bits (377), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 10/147 (6%)

Query: 30  LLKKIKRS--AYVYRVDCGGCNGCEIE-IFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
           L+KKI R    +V  V  GGCNGC+IE + A  SP +DAE++ + +  +PR  DIL+ +G
Sbjct: 8   LMKKISRKKCIHVMLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTFNPRETDILIVSG 67

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD-------LYCVWGGTDKIVPVD 139
            VT+ ++    + ++  P+PK  ++ G+C  +GG++ +          V G  + I+PVD
Sbjct: 68  CVTKFVKESLRKIYEKIPEPKAVVAIGSCALTGGVYKNIGGDLGTSDFVAGPVENIIPVD 127

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQK 166
           V +PGC P P   + G   A+ L+ ++
Sbjct: 128 VKVPGCAPRPEDIISGIVKAIPLVVER 154


>UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (NADH-ubiquinone oxidoreductase 20 kDa subunit) (Complex
           I-20kD) (CI-20kD) (PSST subunit). n=1 Tax=Gallus gallus
           RepID=UPI0000EC9F96
          Length = 176

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 7   PRDANGIP----VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           P+ +  +P    VP +  E I +    L+   +R A  +       +     +   L   
Sbjct: 6   PKSSAVVPKKSYVPTSRGEYIVTKLDDLINWARRRACFW---TECFHCVASNMGYLLWKS 62

Query: 63  FDAERFG-IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +   FG I++      +   L        +      A    P+      + +C N GG 
Sbjct: 63  HERSSFGLIQLTAHMPMSTACLPARPHENHLSPHLTSAAGLGPELCFTNIFCSCANGGGY 122

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       ++++  
Sbjct: 123 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRERK 169


>UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Sulfurospirillum deleyianum DSM 6946
           RepID=D1B297_SULD5
          Length = 138

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/134 (41%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 37  SAYVYRVDCGGCNGCEIEIFA-TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           + YVYR++ G CNGC++EI A  L P F  +  G      P  A+ILL TGA+T      
Sbjct: 4   TLYVYRINTGSCNGCDVEILASVLLPKFGFDALGCVYTNDPTLANILLVTGAITARSTPY 63

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
              A +  P  KI ++ G C  SGG+F D Y + G  D  V VDV I GCPP+P     G
Sbjct: 64  LQAALKQLPSKKIVVALGICPISGGVFRDSYAITGPLDTFVDVDVNISGCPPSPKEIAQG 123

Query: 156 FAMALGLLEQKIHA 169
            A A  L  ++ HA
Sbjct: 124 LAQACELWRERYHA 137


>UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=Sulfolobus
           RepID=D2PJN5_SULIS
          Length = 201

 Score =  147 bits (370), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 8/129 (6%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            KRS Y+Y +D G C GC +E+    SP +D  RF I    +PRHAD L+  G +T  M+
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               +A+++ P+PK+ I  GAC  SGGI  +           +   V I GCPP P   L
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG--------VPLEAVVEISGCPPNPFTIL 192

Query: 154 YGFAMALGL 162
                  G 
Sbjct: 193 EALMKVKGK 201


>UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=19 Tax=Bacteria
           RepID=B1ZSE7_OPITP
          Length = 285

 Score =  145 bits (366), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/130 (40%), Positives = 71/130 (54%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
            A++   L K   RS  + +V  GG    E ++    +  +D  RFGI+ V SPRHAD L
Sbjct: 139 AAALDEKLRKMFGRSLRLRQVSAGGSGAEEADLNVLGTIGWDLGRFGIQFVASPRHADGL 198

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           + TG V++ M     + W++ P PKI I+ GA   SGG+F     V  G D IVPVD+YI
Sbjct: 199 VVTGPVSKGMELALRKTWEAMPAPKIVIAVGAEAISGGVFAGHPQVRNGVDAIVPVDLYI 258

Query: 143 PGCPPTPAAT 152
           PG PP P   
Sbjct: 259 PGWPPHPLTI 268


>UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=Ignicoccus
           hospitalis KIN4/I RepID=A8A9X3_IGNH4
          Length = 207

 Score =  144 bits (363), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 63/168 (37%), Gaps = 13/168 (7%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A +K +L    + S ++  +   G   C IE+        D ER G+    +PR  D++L
Sbjct: 18  APVKEALKWSRRNSLWLLHL---GIMCCAIEMMQAAFAFHDFERLGVLARATPRQVDVIL 74

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV----- 138
             G V R +     R +   P P+  I  G C  +GG +     V  G  +++       
Sbjct: 75  INGPVNRKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDGIHEVIESLPEEY 134

Query: 139 -----DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE 181
                 V + GCPP P   L        L+ +   AR P        E
Sbjct: 135 RKDVHVVNLAGCPPRPEGLLRAILKMEELINEGDLARAPLTRYRLHDE 182


>UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Caminibacter
           mediatlanticus TB-2 RepID=A6DAC3_9PROT
          Length = 140

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 38  AYVYRVDCGGCNGCEIEIFA-TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
             ++R++ G CNGC++EI A  +S  FD ++ G + + +   ADI + TG VT       
Sbjct: 7   PKIFRINTGSCNGCDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFL 66

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
               ++   P + IS G C  + GIF D Y + G  D  V VDV + GCPP P A L G 
Sbjct: 67  KEVIKNHKKPYVVISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGV 126

Query: 157 AMALGLLEQK 166
             A+ +L++K
Sbjct: 127 KTAIDILKRK 136


>UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN
          Length = 214

 Score =  140 bits (354), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 7/170 (4%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           +    P+     P P +  E + +    L+   +RS  ++ +  G    C +E+    +P
Sbjct: 42  TQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMHMAAP 99

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICIS--YGACGNSG 119
            +D +RFG+    SPR +D+++  G +T  M     ++    PD    +   +G     G
Sbjct: 100 RYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKS-PPRPDAGAALRGLHGELRQRG 158

Query: 120 GIFHDLYCVWGGTDKIVPVDVYI-PGCPPTPAATLYGFAMALGLLEQKIH 168
            +   L+ + G   +      ++ P  P T  A LYG       ++++  
Sbjct: 159 RLLP-LFLLGGEGLRPHRARGHLHPRLPTTAEALLYGILQLQRKIKRERR 207


>UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophilus torridus
           RepID=Q6L0U2_PICTO
          Length = 202

 Score =  139 bits (350), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA 79
           ++ I+ +  S+ KK ++S  +Y +D G C  C  E+F+   P +D  R+ I    +PRHA
Sbjct: 69  NDDISIISGSIDKKFRKSLNIYSIDSGTCGACNSELFSISIPEYDLTRYHIFFTNTPRHA 128

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D ++ +G    +M+     A  + P P   I  GAC  SGGI    +         +   
Sbjct: 129 DAIILSGIYNESMKDVIDNALGAMPKPGYLILLGACALSGGIIGSGHE--------IKAV 180

Query: 140 VYIPGCPPTPAATLYGFAMAL 160
           + IPGCPP P   L G    +
Sbjct: 181 LEIPGCPPNPYTILKGLRRLM 201


>UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shigella sp. D9
           RepID=UPI0001B52F0A
          Length = 173

 Score =  137 bits (344), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/117 (69%), Positives = 94/117 (80%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           + P     +  P+T+DE    MK  LL+ I+RSAYVYRVDCGGCN CEIEIFA ++P+FD
Sbjct: 1   MSPVLTQHVSQPITLDEQTQKMKQHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFD 60

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
           AERFGIKV+ SPRHADILLFTGAVTRAMR PALRA++SAPD KIC+SYGACG  GG 
Sbjct: 61  AERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGAGGGF 117


>UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW77_ACICJ
          Length = 164

 Score =  136 bits (343), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 63/141 (44%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           + RS  V  VD G C GCEIEI A           GI +V   R ADILL TG  TR + 
Sbjct: 22  LGRSLAVRHVDAGSCGGCEIEIAACRRLRGGMAAHGIAMVEDLRAADILLVTGVATRNLA 81

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               ++      P+  ++ G C   GG+F  +  V GG   ++PVD+ I GCPP P   L
Sbjct: 82  EAVRKSLAGMAPPRFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQIL 141

Query: 154 YGFAMALGLLEQKIHARGPGE 174
            G    +    ++        
Sbjct: 142 AGLVALVEANAREPRRARVEP 162


>UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulibacter bethesdensis
           CGDNIH1 RepID=Q0BPG7_GRABC
          Length = 174

 Score =  136 bits (342), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 1/152 (0%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
           D   +P   TV   IA  ++S   K+ ++  +  V+ GG + C +E+ A  +      R 
Sbjct: 17  DTASLPHAETVAALIARRRSSARPKLGQALSILHVESGGGSACLLELEALRAAPGLLARH 76

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           G++ V SP HADILL TG     + S   +AW++ P P+  I+ G      G+    Y  
Sbjct: 77  GLRFVTSPLHADILLITGDGCHNLTSAIHQAWEAMPGPRWAIAVGDGAAGDGLLRGSYAS 136

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
            G  ++ +P D+ IPG PP     L G    +
Sbjct: 137 TGNMEE-IPFDLVIPGSPPAADTILSGLRALV 167


>UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2
           Tax=Aciduliprofundum boonei T469 RepID=B5ICA0_9EURY
          Length = 179

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 12/131 (9%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             +S +++ +D G C+ C  EI    SP +D  R G    P PRHADILL  G  T  M 
Sbjct: 60  FNKSVHIFVLDVGSCSSCNREISLLNSPQYDLHRLGFFFTPVPRHADILLVIGEPTEKMI 119

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
                A++  P+PKI ++ GAC N               +KI+ VD  + GCPP P A L
Sbjct: 120 PVLKEAYEQMPEPKIVMTAGACAN------------EKIEKIIKVDARVSGCPPQPIAIL 167

Query: 154 YGFAMALGLLE 164
               M  G   
Sbjct: 168 KALLMLTGRWN 178


>UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans
           RepID=Q5FU78_GLUOX
          Length = 161

 Score =  129 bits (325), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 59/124 (47%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           R   +Y ++ GGC GC +EI +     F  E+ G   V  P  AD LL TGAVTR     
Sbjct: 35  RPIGLYVLEAGGCEGCFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVCAEM 94

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
             R W++ P  +  I+ GAC   GG F   Y   GG + + PV   I GCPP+P   L  
Sbjct: 95  VDRVWRAMPPGRSLIAVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSPDDILRA 154

Query: 156 FAMA 159
               
Sbjct: 155 LQEL 158


>UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LSU0_ACIC1
          Length = 269

 Score =  126 bits (317), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 21/182 (11%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKR---SAYVYRVDCGGCNGCEIEIFATLS 60
               RD   +P     D+++A+++A L ++ +    S +V  VD G     E E+ A L+
Sbjct: 88  PAAHRDLLVVPALPETDDALAAVRAELARRTRLLRRSIHVRHVDAGSDGADEWEVLALLN 147

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           P++D  R GI    SPRHAD+LL TG  +R M +P  R  Q+AP P + I+ G    SGG
Sbjct: 148 PVYDIHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIAAGTDAISGG 207

Query: 121 IFHDLYCVWGGTDKIV------------------PVDVYIPGCPPTPAATLYGFAMALGL 162
           + H  Y   GG   ++                   VD+++PG PPTP A L+   +A+G 
Sbjct: 208 LVHPTYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPTPFALLHALLLAMGR 267

Query: 163 LE 164
           L+
Sbjct: 268 LQ 269


>UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           n=1 Tax=Taeniopygia guttata RepID=UPI000194DF39
          Length = 183

 Score =  124 bits (311), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 45/171 (26%)

Query: 2   SNLLGPRDANGIP----VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFA 57
           S++   + +  +P    VP +  E + +    L+   +RS  ++ +  G    C +E+  
Sbjct: 47  SSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMH 104

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
             +P +D +RFG+    SPR AD+++  G +T  M     +       P           
Sbjct: 105 MAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRK------KP---------PC 149

Query: 118 SGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
            G                         CPPT  A LYG       ++++  
Sbjct: 150 RG------------------------RCPPTAEALLYGILQLQRKIKREKR 176


>UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax=Leptospira biflexa
           serovar Patoc RepID=B0SCU6_LEPBA
          Length = 273

 Score =  120 bits (301), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           KR      V  GG N  E E+ A+ + +FD+ER GI+ V SP+HAD ++F+G ++  M  
Sbjct: 136 KRGFLYREVAAGGNNTVESELNASFNSVFDSEREGIRCVASPKHADTIVFSGPISEQMEG 195

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
           P   AW    +P+  I+ G    SGG+F       G   K    D+YI G PP P   L 
Sbjct: 196 PLQTAWDVLSEPRALIACGTEAVSGGLFPK-----GKIPK--EPDLYISGDPPRPDVILQ 248

Query: 155 GFAMALGL 162
           GF + +G 
Sbjct: 249 GFRLLIGR 256


>UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax=Leptospira
           RepID=Q04P25_LEPBJ
          Length = 273

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRS-----AYVYRVDCGGCNGCEIEIFATLSP 61
            R+A  +     + +    M+   +K+ +++          V   G N  E EI A+ + 
Sbjct: 100 DREALKVTYTNGMPDEKPEMETEEVKRFRKTTKKTGFQFREVAASGNNTTEAEINASFNA 159

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
           LFD+E   I+VV SP+HAD L+++G V   M  P   AW++ P PK  ++ G+   SGG+
Sbjct: 160 LFDSEASKIRVVASPKHADALVYSGPVGPNMEEPLNTAWETMPSPKALVACGSEAVSGGL 219

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           F       G   K    D++I G PP P   +  F   +G  E    A 
Sbjct: 220 FK-----LGKLPK--EPDLFIGGDPPRPDVIISAFRYLMGTRELSFTAE 261


>UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanocaldococcus
           RepID=Y726_METJA
          Length = 216

 Score =  114 bits (284), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 8/168 (4%)

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG-------T 132
           DI+L  GAV         +  +   + K+ I+ G+C  SGG    L  +  G        
Sbjct: 26  DIVLVGGAVNLDDEEEVKKIMEIRKNSKVLIAVGSCAVSGGFQRMLIGLENGFPQRFVRI 85

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLR 192
             +V VD  I GCPP            +   ++ + +    +  E  A     D    + 
Sbjct: 86  GDVVKVDYAIIGCPPDEEEVERIVKAVIEKDKEIVDSYLILKPYEVIAGKPIIDAYMKVN 145

Query: 193 VKVDREARRLAGYRYGRQIADDYLTQLGQ-GEEQVARWLEAENDPRLN 239
             +    + L      + I D++ T  G    +  A  L  +  P++N
Sbjct: 146 DVLLTSNKELCLGCDDKPINDEFCTGCGTCVAKCPANALTIDEKPKVN 193


>UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2H7B9_CHAGB
          Length = 189

 Score =  112 bits (281), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 53/150 (35%), Gaps = 48/150 (32%)

Query: 15  VPMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
            P +V E   S    L+   ++ S +       G   C IE+     P +D +R GI   
Sbjct: 74  RPNSVTEYALSTLDGLINWARQGSLWPMSF---GLACCAIEMMHLSMPRYDNDRQGIIFR 130

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR +D+++  G                                            G D
Sbjct: 131 ASPRQSDVMIVAG--------------------------------------------GVD 146

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
           +IVPVD+Y+PGCPPT  A  YG       +
Sbjct: 147 RIVPVDIYVPGCPPTAEALQYGIFQLQKKM 176


>UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, putative n=1
           Tax=Ricinus communis RepID=B9SD17_RICCO
          Length = 188

 Score =  109 bits (272), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPA 150
           M    +R ++  P+PK  I+ GAC  +GG+F  D Y    G DK++PVD Y+ GCPP P 
Sbjct: 1   MAPSLVRLYEQIPEPKYVIAMGACTITGGMFSTDSYSTIRGVDKLIPVDAYLSGCPPKPE 60

Query: 151 ATLYGFAMALGLLEQKIHARGPGELDEQP 179
           A +         L ++I+        E  
Sbjct: 61  AVIDAITKLRKKLSREIYEDRIRSQPENR 89


>UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteriaceae
           RepID=B2N3C8_ECOLX
          Length = 124

 Score =  107 bits (268), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           +DV+IPGCPPTPAAT++GFA+ALGLL+QKIHA    +      + L   +    R+ ++R
Sbjct: 6   IDVWIPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIER 65

Query: 198 EARRLAGYRYGRQIADDYLTQLGQGE--EQVARWLEAENDPRLNEIVSHLNHVVE 250
           EARRLAGYR GR+I D  L  L       +V  WL   +DPRLN IV  L  V+ 
Sbjct: 66  EARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLRDADDPRLNSIVQQLFRVLR 120


>UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=Thermococcus
           onnurineus NA1 RepID=B6YTV9_THEON
          Length = 225

 Score =  100 bits (250), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFTGAVTRAM 92
              V  VD GGC GC + I      L D     I  +          D+ + TG      
Sbjct: 3   KLKVLHVDVGGCEGCNVSIIRAYPKLMDLIELDISYLRKDECKLDEYDVAIITGGACMNE 62

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIF---------HDLYCVWGGTDKIVPVDVYIP 143
                   +        +++G+C    GI             +  +   + ++ VD  IP
Sbjct: 63  PRILEELKEIREKAHTVVAFGSCATFSGILRFCRGGQEPRPDHRNFQPINSVIKVDYSIP 122

Query: 144 GCPPTPAATLYGFAMALGLLEQKIH 168
           GCPPTP      F   +   E+++ 
Sbjct: 123 GCPPTPQMLQSFFKFYINGDERRLR 147


>UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n=1 Tax=Thermococcus
           gammatolerans EJ3 RepID=C5A2R7_THEGJ
          Length = 229

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 13/145 (8%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFTGAVTRAM 92
              V  VD  GC GC + I      L +     I  +          D+ L TG      
Sbjct: 6   KLKVLHVDFAGCEGCNVSIIRAYPKLMNEIDLDISYLRDGSCQYGEYDVALITGGACMNE 65

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIF---------HDLYCVWGGTDKIVPVDVYIP 143
                   +     ++ +++G+C + GGI             +  +   + ++PVD  IP
Sbjct: 66  PRILEELKEIREKARVVVAFGSCASLGGILRFARGGQEPRPDHRNFQPINSVIPVDYSIP 125

Query: 144 GCPPTPAATLYGFAMALGLLEQKIH 168
           GCPPTP      F   +   E ++ 
Sbjct: 126 GCPPTPQMLQSFFKFFMAGNESRLR 150


>UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax=Euryarchaeota
           RepID=FRHG_METBF
          Length = 259

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 54/161 (33%), Gaps = 17/161 (10%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLF----DAERFGIKVV-PSPRH---ADILLFTGA 87
               +  V   GC GC + +      L     D       +     RH    D+ L  G+
Sbjct: 3   NKIKIGHVHMSGCTGCLVSLADNNLGLIKILDDYADLVYCLTLADVRHIPEMDVALVEGS 62

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL---------YCVWGGTDKIVPV 138
           V            ++    KI ++ G+C   G I             +  +     ++ V
Sbjct: 63  VCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHESYLPIGDLIDV 122

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
           DVYIPGCPP+P        MA  LLE     +       +P
Sbjct: 123 DVYIPGCPPSPELIRNVAVMAYLLLEGNEEQKELAGKYLKP 163


>UniRef50_C1GND6 NADH-ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Paracoccidioides brasiliensis Pb01
           RepID=C1GND6_PARBA
          Length = 159

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATL 59
           +S L   R+A  I   +++ E        ++   +  S +       G   C +E+ A  
Sbjct: 16  VSTLGVIREAERISSLISLQEEKNGSIDKVVNWAREGSLWPLSF---GLACCNMEMMAVS 72

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS 102
            P +D +R G     SPR +D+++   AVT+            
Sbjct: 73  MPRYDQDRLGTIFRASPRQSDVIIVADAVTKQDGPRLAVTRGQ 115


>UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota RepID=A6UVU9_META3
          Length = 227

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 20/140 (14%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIK------VVPSPRH---ADILLFTGAVTR 90
           V  V    C GC + +  T   L D    G         +   R    ADI+L  G+V  
Sbjct: 4   VAHVQLSSCCGCLVSLTDTYEKLLDV--LGAIDLVYSQTIADAREIPEADIILVEGSVCL 61

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFH---------DLYCVWGGTDKIVPVDVY 141
                   A       KI ++ GAC  +GGI            ++  +    ++V  D+ 
Sbjct: 62  DDHHAMEIAQDVGKKAKILVALGACAATGGITRFCRGGQMSKPIHSSFSPITEVVKCDLA 121

Query: 142 IPGCPPTPAATLYGFAMALG 161
           IPGCPP+P   +     A+ 
Sbjct: 122 IPGCPPSPEIIVGLITAAIE 141


>UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13
           Tax=Methanococcales RepID=VHUG_METJA
          Length = 288

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 66/234 (28%), Gaps = 45/234 (19%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD----AERFGIKVVPSPRHA----DILLFTGAVT 89
             V  +   GC+GC I +      L +     E     ++  P+      D+ L  G + 
Sbjct: 6   VKVGMIQLCGCSGCHISLLDLHDKLLEVLPNLEIVYAPIIADPKEIPEGIDVFLVEGGIR 65

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLYCV--------- 128
                      +     KI I++G C   GGI             + +Y           
Sbjct: 66  NEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKEELLNYVYSTDSTENKGEI 123

Query: 129 -----------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
                             + VD  IPGCPPTP          L   E K+  +   +   
Sbjct: 124 PSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIALLNGEEPKLPTKIVCDECP 183

Query: 178 QPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLE 231
           +  E +     +  +   +                  + T+ G G +  +  + 
Sbjct: 184 RKKENV---FPETFKRTHEGRPDPERCLFEQGYTCLGFATRAGCGAKCPSAGVP 234


>UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
           RepID=UPI0000E81815
          Length = 187

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 54/167 (32%)

Query: 7   PRDANGIP----VPMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSP 61
           P+ +  +P    VP +  E I +    L+   +R S +   +    C             
Sbjct: 63  PKSSAVVPKKSYVPTSRGEYIVTKLDDLINWARRTSLWPSMLAQQNC------------- 109

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
                                         +    L    + P+         C N GG 
Sbjct: 110 -----------------------------HLHPALLGLSAAEPEDG-------CANGGGY 133

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       ++++  
Sbjct: 134 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRERK 180


>UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subunit n=2
           Tax=Methanopyrus kandleri RepID=Q8TYW2_METKA
          Length = 305

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 46/192 (23%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV---------VPSPRHADILLFTGAVTR 90
           +       C GC + +      L D     I++            P H ++ +  G++  
Sbjct: 6   IATAQLSSCVGCHVSLLDLHEKLLDLLEDAIEIEYCYVLVDQKEIPEHVNVAVIEGSI-- 63

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGG----------------IFHDLYCV------ 128
                   A +      I ++ G C   GG                +F +          
Sbjct: 64  RNEEDLEVAEELREAADIVVAVGTCACYGGVHGLANLYQLDDILEWVFKETPTTDDEGET 123

Query: 129 -----------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
                           +++ VD  +PGCPP P +        L   E ++        +E
Sbjct: 124 PEEVVPELFGYVRPLPEVIDVDYMLPGCPPKPESIAEVITAILEDREPELPTTNL--CEE 181

Query: 178 QPAEILHGDMVQ 189
            P E     + +
Sbjct: 182 CPREKEDIPIEE 193


>UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2 Tax=Roseiflexus
           RepID=A5UWN9_ROSS1
          Length = 127

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPAL 97
             VYR + G C GC++E+ A L+         I    +P  AD+LL TG +T   +   +
Sbjct: 2   IQVYRFNTGSCGGCDLEVIAALAAA-----ADIDWAATPHEADVLLLTGPLTTDTKKAFM 56

Query: 98  RAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP--GCPPTPAATLYG 155
              Q        I+ G C   G  F       GG   I  + V++   GCPPTP   +  
Sbjct: 57  ALLQELDHRAPIIAVGRCAIDGHPFG-----RGGVAVIPNLTVHLSLDGCPPTPTQIVEA 111

Query: 156 FAMALGLLEQKIHARG 171
                   E       
Sbjct: 112 IRTIAMDREDGAAGER 127


>UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLU1_SYNFM
          Length = 184

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 47/168 (27%), Gaps = 42/168 (25%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF-GIKVVPS------PRHADILLFTG 86
                 +     GGC GC + +      L D      I   P       P   D+ L  G
Sbjct: 5   ASNKVRLATAWFGGCAGCHMSLLDLDERLIDVVGLVDIVYSPVADIKVFPEGVDVTLVEG 64

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------------------- 121
           A           A +     KI I++G C  +G +                         
Sbjct: 65  ACCN--DENVHLAHEVRERSKIVIAFGDCAVTGNVPSMRNRLDRDQMINSVYFEGPGKPP 122

Query: 122 --------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
                      L        +++PVD+++PGCPP P          L 
Sbjct: 123 PTSVLGHFLPTLIPKVLPLHQVIPVDIFLPGCPPDPERIWAAIVALLK 170


>UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 Tax=Dictyoglomus
           RepID=B5YB68_DICT6
          Length = 180

 Score = 87.4 bits (215), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 55/176 (31%), Gaps = 45/176 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP--------RHADILLFTGAV 88
              V  V C GC+GC +        L +    G+++  +P           DI +  GAV
Sbjct: 3   KIKVASVWCEGCSGCHMSFLDMDERLVELINKGLEINATPITDLKIPDEGTDIGIIEGAV 62

Query: 89  -TRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLYCVWGG 131
            T                 KI ++ G C   GGI                +        G
Sbjct: 63  ATDHHEEEVKMM---RERCKIIVALGDCAVFGGIPTMRNYIPREELLERGYITTESTVDG 119

Query: 132 -----------------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                             ++++ VD+Y+PGCPP+  A  Y     L     K+   
Sbjct: 120 KIPTSPEIGKHLPKTKAVNEVIKVDLYVPGCPPSADAIYYVLKEVLEGRIPKLEGE 175


>UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing
           hydrogenase), gamma subunit n=2 Tax=Euryarchaeota
           RepID=Q0W6J6_UNCMA
          Length = 305

 Score = 86.7 bits (213), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 61/206 (29%), Gaps = 47/206 (22%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLS---PLFDAERFGIKVV-----PSPRHADILLFTGAV 88
              V     G C GCEI +  T     P+ D   F    V       P+ A + + +G V
Sbjct: 3   KVKVAETWIGACAGCEISVLDTHEALLPILDKIEFVYIPVLMDTKHIPK-ATVGIVSGCV 61

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGG---------------------------- 120
                       +   +  I ++ G+C   GG                            
Sbjct: 62  --RNSDNLHELLEMRKNVDILVALGSCACFGGTPGMANLYTPEQLLEEVYVTTKSTKNEI 119

Query: 121 ---IFHDLYCVW----GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP- 172
               + D               V VD  IPGC P PA         LG  E K+  +   
Sbjct: 120 QRHPYMDGLPTLLPDAKPLSDYVKVDAMIPGCGPRPAMIAQAILSLLGAAEYKLSTKSVC 179

Query: 173 GELDEQPAEILHGDMVQPLRVKVDRE 198
            E   + +E     +++P    +D +
Sbjct: 180 DECAREKSERNLKKILRPFEGTIDEK 205


>UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria RepID=A1SU83_PSYIN
          Length = 433

 Score = 86.3 bits (212), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 62/196 (31%), Gaps = 57/196 (29%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPSP--------RHADILL 83
           K K+   +      GC GC +        L +  ER  +++  SP           D+ L
Sbjct: 253 KPKKKLKLATCSLAGCFGCHMSFLDMDERLIELLER--VELSRSPLNDIKTCAPDCDLGL 310

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI---------------------- 121
             GAV        LR +      KI I+ G+C  +GG+                      
Sbjct: 311 IEGAVCNTENIAVLRHF--RESCKIIIAVGSCAINGGVPSLRNNIDVKDCLDEAYLNGIG 368

Query: 122 -----------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                         L        +++ VD ++PGCPP   A        L          
Sbjct: 369 LVNPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPADAFWKILNDLLD--------- 419

Query: 171 GPGELDEQPAEILHGD 186
             G+  E P ++LH D
Sbjct: 420 --GKEPELPYDLLHFD 433


>UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=Methanococcus
           RepID=FRHG_METVO
          Length = 243

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 50/158 (31%), Gaps = 36/158 (22%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFG------------------------IKVV 73
             +  +   GC GC I +  T   L D    G                        +   
Sbjct: 2   VKIAHIHMSGCTGCLISLTDTYEKLLDI--LGSVELVYALTLTGEKTEITETDDKILIER 59

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPK-ICISYGACGNSGGIFH--------- 123
             P   DI L  G+V             +  + K   ++ GAC  SGG+           
Sbjct: 60  DIPGGIDIALVEGSVCLDDHHSMDDILTTRKNSKKSLVALGACAASGGVTRFRRVGQMSQ 119

Query: 124 DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
             +  +     ++ VD+ +PGCPP+  + +     AL 
Sbjct: 120 PSHASFVPIGDVIKVDLALPGCPPSTESIVKLLTAALE 157


>UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=4
           Tax=Proteobacteria RepID=Q21RP8_RHOFD
          Length = 188

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 51/166 (30%), Gaps = 44/166 (26%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP----RH---ADILLFTGAV 88
           R   V  V   GC GC +        LFD     I+   SP    +     DI L  G +
Sbjct: 11  RKLKVATVSLAGCFGCHMSFLDIDERLFDLIEH-IEFDRSPLTDIKQVGACDIGLIEGGL 69

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGG------------IFHDLY---------- 126
                       +     K  ++ GAC  +GG            +  ++Y          
Sbjct: 70  CN--AENVQVLREFRAHCKTLVAVGACAITGGLPAQRNHLDLGQLLTEVYRSRPGLSAGG 127

Query: 127 ------------CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                              ++V VD  +PGCPP+  A  +  +  +
Sbjct: 128 AIPNDPELPLLLNKVHPIREVVHVDYSLPGCPPSADAFWHFLSDLM 173


>UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n=46 Tax=Bacteria
           RepID=Q3M430_ANAVT
          Length = 181

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 49/180 (27%), Gaps = 43/180 (23%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG---IKVVPS----PRHADILLFTGAVT 89
              +  V  GGC+GC +        L D                  P   D++L  GA+ 
Sbjct: 3   RLKLATVWLGGCSGCHMSFLDLDEWLIDLAAQADVVFSPFADIKEYPEGVDVVLVEGAIA 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG------------------------------ 119
                            +I IS+G C  +G                              
Sbjct: 63  N--EEHLTTIKIVRERSQILISFGDCAVTGNVTALRNPLGSAEPVLQRCYIQAVDINPQI 120

Query: 120 ----GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGEL 175
               GI   L         IVPVD+Y+PGCPP+           L      +  R   + 
Sbjct: 121 PQEPGIVPPLLDRVTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQGKTPHLSGREFIKF 180


>UniRef50_Q6A6I9 NADH dehydrogenase subunit n=2 Tax=Propionibacterium acnes
           RepID=Q6A6I9_PROAC
          Length = 132

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 15/120 (12%)

Query: 39  YVYRVDCGGCNGCEIEIFAT---LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
            VY VD      C +E  A     +P+ +    G  +        ++L +G VT  +   
Sbjct: 11  SVYVVDL-ALACCGVESGAAVLANAPVREEIPDGAPI--------VVLVSGTVTTGLAPV 61

Query: 96  ALRAWQS--APDPKICISYGACGNSGGIFHDLYCVWGGT-DKIVPVDVYIPGCPPTPAAT 152
                       P   +++GAC  +GG + D   V  G  D  V  D +IPGCPP P   
Sbjct: 62  VSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPPGPETL 121


>UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=6 Tax=Bacteria
           RepID=B8G3U7_CHLAD
          Length = 177

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 53/172 (30%), Gaps = 43/172 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAER---FGIKVVPS----PRHADILLFTGAVT 89
              +  +  GGC+GC + +      L +           +      P H D+ L  GA+ 
Sbjct: 3   RIRIATIWLGGCSGCHMSLLDLDEWLIELAAQADLVYSPIADVKRFPSHVDVTLIEGAIA 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG------------------------------ 119
                    A  +  + KI +S+G C  SG                              
Sbjct: 63  NN--EHLELAHIARRNSKIIVSFGDCAVSGNVTALRNPLGSPEQLLQQVYIEHSDPRGKI 120

Query: 120 ----GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
               GI   L        +++PVD Y+ GCPP+           L   + ++
Sbjct: 121 PHEPGIVPVLLDKVMPVHQVIPVDYYLSGCPPSAPRIRALLEALLTGRKPEV 172


>UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Tax=Bacteria
           RepID=Q2LYD8_SYNAS
          Length = 253

 Score = 78.9 bits (193), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 35/153 (22%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH---------ADI 81
           ++++     V   D   C GC++++      L D    G   V   R           D+
Sbjct: 1   MERMLMKPKVAFFDFACCEGCQLQVANLGEALLDI--LGAIDVVEFREVMSEKWDKNYDV 58

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG----------------IFHDL 125
            +  G++T        R  +      + I+YG+C   GG                ++   
Sbjct: 59  AIVEGSITDEHAE--QRIRKIRDRSAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVYGKD 116

Query: 126 YCVW-----GGTDKIVPVDVYIPGCPP-TPAAT 152
           Y ++         ++V VD +I GCP   P   
Sbjct: 117 YQLFDSKKTRPIHQVVKVDYFINGCPVYHPEVI 149


>UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 Tax=Ixodes
           scapularis RepID=B7QG38_IXOSC
          Length = 162

 Score = 77.0 bits (188), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            + +    +P+  IS G+C N GG +H  Y V  G D+I+PVD+Y+PG
Sbjct: 78  RKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 125


>UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Methanopyrus kandleri RepID=Q8TXX1_METKA
          Length = 238

 Score = 76.3 bits (186), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 52/173 (30%), Gaps = 15/173 (8%)

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH--------DLYC-VW 129
           ADIL   GAV  A      +  ++A      +S G+C  +GG           D Y    
Sbjct: 43  ADILFVEGAVDFADAETLEKLEEAASAVSTVVSLGSCAATGGFERHVIGMRDPDRYHFTV 102

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP--GELDEQPAEILHGDM 187
               K V  D  I GCPPT               E ++       G+      E+     
Sbjct: 103 FPAAKFVETDYAINGCPPTTDVIASFLRALEEENEDELRPYEVLSGDFHGLTPELSAPVT 162

Query: 188 VQ--PLRVKVDREARRLAGYRYGRQI-ADDYLTQLGQ-GEEQVARWLEAENDP 236
               P+   +    + L        I  D +    G       A  +E +  P
Sbjct: 163 GPTVPVEDVLLTSNKDLCLGCDLDVIEKDLFCVGCGTCAASCPAWAIEMDEKP 215


>UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n=7
           Tax=Deltaproteobacteria RepID=A0LP54_SYNFM
          Length = 324

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 70/241 (29%), Gaps = 68/241 (28%)

Query: 46  GGCNGCEIEIFATLSP---------------LFDAERFGIK----VVPSPRHADILLFTG 86
             C GCEI +                     LFD + FG       +  P  ADI + +G
Sbjct: 11  SSCAGCEISMLNMGGLFLELLKEIRIVHMPLLFDHKYFGQAGEENFIGIP-EADIGIVSG 69

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLYCV------ 128
            +          A +     +I ++ G C   GGI            F   Y        
Sbjct: 70  GI--RNEEQLEVALKVRAQCRILVALGTCATHGGIPALMNRYSDEDLFRRYYRTSETTEA 127

Query: 129 WGGTDKIVP--------------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
               +++VP              VDVY+ GCPP P      F   L            G+
Sbjct: 128 AAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPDYLGAMFRTLLD-----------GQ 176

Query: 175 LDEQPAEILHGDMVQPLRVK-VDREARRL--AGYRYGRQIADDYLTQLGQGEEQVARWLE 231
             E P + +          K   ++ RR   +      +   +    L QG   +     
Sbjct: 177 WPEMPTKSVCDTCPTRREGKGNVQKIRRFTRSARFQNEKPLSEMKCLLEQGLLCMGPVTR 236

Query: 232 A 232
           A
Sbjct: 237 A 237


>UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit FrhG n=1
           Tax=Methanobrevibacter ruminantium M1
           RepID=UPI0001C420D3
          Length = 319

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 17/148 (11%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFA----TLSPLFDAER--FGIKVVP--SPRHADIL 82
           ++K+     +  +   GC G  + +        + L D     +G  +V        D+ 
Sbjct: 84  VEKVADKPKIGYIHMSGCTGDGMSLTENYDILSTLLTDMVDIVYGTTLVDLWEMPEMDLA 143

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH---------DLYCVWGGTD 133
           L  G+V            +      +  ++G+C  +G               +  +    
Sbjct: 144 LVEGSVCLQDEHSVKELMEVREKAGLVCAFGSCAMTGCFTRYARGGQLAQPKHESFVPIS 203

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALG 161
            +V VD  IPGCP +P          + 
Sbjct: 204 DLVKVDCAIPGCPASPEIIAKVVVALIN 231


>UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=D2REQ3_ARCPR
          Length = 321

 Score = 73.2 bits (178), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 51/181 (28%), Gaps = 60/181 (33%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKV-------------VPSPRHA-DIL 82
             +  +  GGC GC++ +      L D  E   I                  P  + D+ 
Sbjct: 3   LKLAYLLVGGCGGCDMAVVDLSEKLVDALEHLEIVFWAPTVADVKYKDLEAMPDQSIDLG 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLY---- 126
           L +G V        ++  +     KI +++G C   GGI            F + Y    
Sbjct: 63  LISGMVRNKENEHLVKVMRQ--KCKIIVAFGICAALGGIPGMANMHKNEELFENAYIKSP 120

Query: 127 ---------------------------CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
                                            D+++ VD Y+ GCPP            
Sbjct: 121 STDNPNNVIPQPVSKEGEFELTLPEFLDRVKPIDEVIEVDYYVGGCPPHHDHVAKVVEAV 180

Query: 160 L 160
           +
Sbjct: 181 I 181


>UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small subunit n=5
           Tax=Dehalococcoides RepID=D2BHA4_DEHSV
          Length = 312

 Score = 73.2 bits (178), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 75/258 (29%), Gaps = 59/258 (22%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDA--------------------ERFGIKVVPSPRHA 79
           V       C GCE+ I     PL D                     +  GIK    P  A
Sbjct: 4   VAEEWFAVCGGCELSILDIGEPLLDVLPNLKIVHMPVLMDHKLLGQKGDGIKY-EIP-EA 61

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLYC 127
           D+ + TG +          A +     K+ ++ G C   GGI               ++ 
Sbjct: 62  DLGIITGGI--RNEENRELALEMRKKCKLIVALGTCACFGGIPALANLSTTEDMLKQVFS 119

Query: 128 VWGG---------------------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
              G                      D+I+ VD+++PGCPPTPA  +      L      
Sbjct: 120 KEKGTDPASPPGDKSLPKMLDRVYAVDEIITVDIHLPGCPPTPAHIVELLTAVLAGKTFA 179

Query: 167 IHARGPGELDEQPAEILH--GDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEE 224
           +  R   +      E     G + +PL+       R         Q           G  
Sbjct: 180 LPERSVCDTCPTIREKQSTGGSIKRPLQNAQFTPGRYDNMRCLNEQGLFCLGPVTKAGCN 239

Query: 225 QVARWLEAENDPRLNEIV 242
           ++     +E  PR  +  
Sbjct: 240 RILGADPSEEIPRCIKAY 257


>UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax=Euryarchaeota
           RepID=MVHG_METTH
          Length = 308

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 58/203 (28%), Gaps = 49/203 (24%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP----------RHADILL 83
           +     +  +  GGC+GC + I      + D          SP             D+++
Sbjct: 1   MAEKIKIGTMWLGGCSGCHLSIADFHEKIIDVMEH-ADFEFSPVLMDTKYDEIPELDVVI 59

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-----FHDLYCV---------- 128
             G +          A +     K  ISYG C   GGI       D   V          
Sbjct: 60  IEGGIVN--DENREFAEELREKAKFVISYGTCAVYGGIPGLRNLWDKDEVIEEAYINSIT 117

Query: 129 -------------------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
                                   +++ VD  +PGCPP            L   E ++  
Sbjct: 118 TPNEEGVIPSEDVPHLEGRVKPLGEVIDVDFEVPGCPPRSDVAAEAVMALLTGEEIELPE 177

Query: 170 RGPGE--LDEQPAEILHGDMVQP 190
               E    E+P E L  D ++ 
Sbjct: 178 TNLCEVCPREKPPEGLAMDFIKR 200


>UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subunit, FrhG n=3
           Tax=Methanobacteriaceae RepID=A5UM99_METS3
          Length = 276

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 12  GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIF-------ATLSPLFD 64
            I     V+E+ A +  +  +       +  +   GC G  + +          L+ + D
Sbjct: 22  KIESAPEVEETAAPVAETKQETATNKPRIGYIHLSGCTGDGMSLTENYDILDVVLTEMVD 81

Query: 65  AERFGIKVVP--SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI- 121
              +G  +V        D+ L  G+V            ++     +  ++G+C  +G   
Sbjct: 82  IV-YGQTLVDLWEMPEMDLCLIEGSVCLQDEHSVHELLEAREKSALICAFGSCALNGCFT 140

Query: 122 --------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
                       +  +     +V VDV +PGCP  P            
Sbjct: 141 TYARGGQQAQPKHESFLPISSLVKVDVALPGCPVAPEMIAKTVVALCN 188


>UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria RepID=Q59113_9BACT
          Length = 179

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 53/175 (30%), Gaps = 44/175 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP-------RHADILLFTGAVT 89
            A V       C GC +        L D  +  ++++ SP        + D+ + +G + 
Sbjct: 3   KAKVATFWLEACAGCHMSFLDLDERLIDLFQ-NVEILFSPIVDAKDIPNIDVGVLSGGLG 61

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLYCVWG--- 130
                    A +     K  +++G C   GGI                + +         
Sbjct: 62  N--VEEVELAKKMRERCKYLVAWGDCAVFGGINCMRNFIPKDVVLREGYIETASTVNPQG 119

Query: 131 ---------------GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                            D  V VDVY+PGCPP      Y F   L     K+ + 
Sbjct: 120 IVPSEDIPELLPRALPIDYEVKVDVYVPGCPPDADTIYYVFKELLAGRVPKVPSE 174


>UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=10
           Tax=Chlorobiaceae RepID=B4SFA2_PELPB
          Length = 258

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 27/150 (18%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVP--SPRH---ADILLFTGAVTR 90
              +   D   C GC++++    S L D      I+     S       DI L  G+++R
Sbjct: 14  RLKIASFDFTCCEGCQLQLANRESTLADFLNLLDIRNFRELSSEQHDDYDIALIEGSISR 73

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTD--------------- 133
                  R  +     KI +++G C   GGI    + +      D               
Sbjct: 74  QDE--VERLLKIRQQAKILVAFGTCACFGGINSLKNRFPAREMIDAVYPGMPIETLPVRK 131

Query: 134 --KIVPVDVYIPGCPPTPAATLYGFAMALG 161
              +V VD+ IPGCP             + 
Sbjct: 132 ISDVVKVDLSIPGCPVDKREVERIVVSLVR 161


>UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomiragia
           RepID=C6YT65_9GAMM
          Length = 268

 Score = 70.1 bits (170), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 50/174 (28%), Gaps = 38/174 (21%)

Query: 28  ASLLKKIKRSAYVYRVDCGGCNGCEIEIFA------TLSPLFDAERF-GIKVVPSPRHAD 80
              LK +     +       C+GC++ +        TL+ + D   F     +      D
Sbjct: 4   QDKLKNLAPRPKIAVHKFSSCDGCQLALINDAVSLLTLAEMVDIVHFAEAGPLDEFADVD 63

Query: 81  ILLFTGAV-TRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------------ 121
           I    G+V T        +        K  I+ GAC  +GGI                  
Sbjct: 64  IAFIEGSVNTHHDIPRLQKI---REKAKYVIAIGACAVAGGIQALRNYTNAAELLEWQKA 120

Query: 122 ---------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
                      +         + V VD  I GCP T    L      L  +E +
Sbjct: 121 VYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQILKAIRQLLFGVEPE 174


>UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Nautilia
           profundicola AmH RepID=B9L8N0_NAUPA
          Length = 288

 Score = 70.1 bits (170), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 52/161 (32%), Gaps = 27/161 (16%)

Query: 37  SAYVYRVDCGGCNGCEIEIFAT--LSPLFDAERFGIKVVP-----SPRHADILLFTGAVT 89
              V  +D   C GC         +S LF+   F    +        +  D+L+  GA+ 
Sbjct: 4   KLNVIWIDAVTCYGCTHSFLNYKEISSLFEKVNFEYHPLFLSNDLEIKQCDLLIVEGAL- 62

Query: 90  RAMRSPALRAWQSAP-----DPKICISYGACGNSGGIFHDL--YCVWGGT------DKIV 136
           +        +            K  ++ G C   GG+F +   Y            DKI+
Sbjct: 63  KNNYPRLGYSLNELISKLFFKAKKVLALGTCAVYGGMFGEGLMYNKEQKGHYYKCRDKII 122

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
                +PGCPP P      F + +    +KI         +
Sbjct: 123 ----NLPGCPPHPDWI--AFVLDMISENKKIALDDLNRPKD 157


>UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermococcus sibiricus MM
           739 RepID=C6A155_THESM
          Length = 267

 Score = 70.1 bits (170), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 30/158 (18%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-----VPSP--RHADILL 83
           ++++     +       C GC+++       L   ++  I+        S   +  DI  
Sbjct: 4   VRRMSEKVKIGFYALTSCYGCQLQFAMMDEVLQLLDKANIECWFMLERGSDEDKEVDIAF 63

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLYC---- 127
             G+V+           +     KI I+ G+C   GG+            +  +Y     
Sbjct: 64  IEGSVSTQ--EEVELVKKIREKAKIVIAVGSCAVHGGVQSWDKDKEFNELWKTVYGDAHV 121

Query: 128 -----VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                +    +K + VD  + GCPP     LY     L
Sbjct: 122 KFEPKMAEPVEKYIKVDYKLYGCPPEKKDFLYALGTLL 159


>UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermococcaceae
           RepID=B6YSK0_THEON
          Length = 246

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 43/160 (26%), Gaps = 29/160 (18%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP-------RHADILLFTGAVT 89
              +   +   C GC + I      LFD   F                H D+ L TG V+
Sbjct: 4   KLKLAVFELTDCGGCALNILFLYEKLFDLLEFYEITEFHMATSLSEGSHYDVALVTGTVS 63

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG---------------GIFHDLYCVWGGTD- 133
                  L+  ++       I+ G C   G                ++ D        D 
Sbjct: 64  SQRDLALLK--EARNHSDYLIALGTCATHGSVQASVEGSIREKLKRVYGDEGNPMRALDS 121

Query: 134 ----KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
               + V VD  +PGCP                +E     
Sbjct: 122 KPVVEYVAVDFALPGCPYDKNEVYQVLMDIAKGIEPVKKD 161


>UniRef50_C7J5D7 Os07g0116900 protein n=3 Tax=Oryza sativa RepID=C7J5D7_ORYSJ
          Length = 114

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 48  CNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRA 99
              C +E+    +  +D +RF +   PSPR +D ++  G +T  M     + 
Sbjct: 58  LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPALGKT 109


>UniRef50_A9B2V8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Herpetosiphon aurantiacus ATCC 23779
           RepID=A9B2V8_HERA2
          Length = 124

 Score = 68.5 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 13/132 (9%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPAL 97
             VY ++ G      IE+      +       +    +P HADI + TG +   +R    
Sbjct: 2   IAVYHLNAGSTG---IEVRILAEAI--RSARNLTWAATPAHADIFVLTGPIPLLLRPALS 56

Query: 98  RAW-QSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI--VPVDVYIPGCPPTPAATLY 154
             W     D    I+ G     G  F       GG  ++  + V   I G PPT AA   
Sbjct: 57  NVWRDFIADRAPLIALGRASIDGHPFG-----RGGLAELPEIQVAAKIDGDPPTVAAIQA 111

Query: 155 GFAMALGLLEQK 166
           G   AL     K
Sbjct: 112 GIVQALNARTAK 123


>UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silvestris BL2
           RepID=B8ERX2_METSB
          Length = 190

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 46/165 (27%), Gaps = 43/165 (26%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP---LFDAERFGIKVVPS----PRHADILLFTGAVT 89
              +      GC GC + +         L D     +          R  D+    G  +
Sbjct: 13  KPRLATCSLTGCFGCHMSLLDIDERILELIDLVDLDVSPFDDKKSFDRPVDVGFVEGGCS 72

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLYCVWGGT- 132
                      +     +I +S GAC  +GG+                +     + GG  
Sbjct: 73  N--EYNVKELIEFRKHCRILVSVGACAINGGVPAMRNTVGLRECLEAVYLHGVSLEGGGM 130

Query: 133 -----------------DKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                             ++V +D ++PGCPP+  A        L
Sbjct: 131 IPNDEDLPLLLDRVYPSHEVVKIDYFLPGCPPSGDAIWAALKALL 175


>UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=Methanocella
           paludicola SANAE RepID=D1Z1F3_METPS
          Length = 235

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 16/141 (11%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPSPRHA------DILLFTGAVT 89
                 V    C+GCEI        L D  +   I+ +   + A      DI+   GA  
Sbjct: 3   KPKFAYVHLAACSGCEISFLDNFERLLDMMDMVDIEYMTLIKDATDIPKVDIVFVDGAAC 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGN---------SGGIFHDLYCVWGGTDKIVPVDV 140
                      ++  +    +++G C +          G +    +  +    ++V VD 
Sbjct: 63  LQSEDAVETLKKARENATYLVAWGGCSSTATINNFSRGGQLPQPQHESFPPIKRLVKVDA 122

Query: 141 YIPGCPPTPAATLYGFAMALG 161
            +PG PP P          + 
Sbjct: 123 SVPGSPPGPGMAYNVIRAFVE 143


>UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gamma (VhuG) n=1
           Tax=Archaeoglobus fulgidus RepID=O28898_ARCFU
          Length = 293

 Score = 65.8 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 43/160 (26%), Gaps = 42/160 (26%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP----------SPRHADILLFTGAVT 89
           V      GC+GC + +      + D  R  +               P   D     G + 
Sbjct: 4   VAFYIAHGCSGCTMSMLDLGERMNDF-RMRVAWAAPTLGDGKYDRIP-EVDYAFIEGGIG 61

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIF--------------------------- 122
                      +     +  +++G C + GGI                            
Sbjct: 62  L--SEHVEIVRELREKSETLVAFGICASCGGIMGLANLHSKEEILEDVFGSAKSSVGDLR 119

Query: 123 -HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
             ++       D +V VD YI GCPPTP      F     
Sbjct: 120 IPEMLEFVKPLDSVVEVDCYIGGCPPTPEQIYNAFKAIFE 159


>UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=uncultured methanogenic archaeon RC-I
           RepID=Q0W2X8_UNCMA
          Length = 232

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 18/142 (12%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKV-------VPSPRHADILLFTGAV 88
                 V    C+GCEI        + D  +   I            P+  D+L   GA 
Sbjct: 3   KPKFAYVHLAACSGCEISFLDNFERVLDMMDMVDIDYMTLIADATEIPK-VDLLFVDGAA 61

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGN---------SGGIFHDLYCVWGGTDKIVPVD 139
               +       ++  +    +++G C +          G      +  +    ++V VD
Sbjct: 62  CLQSKESVESLKKARENTGFLVAWGGCSSTATINNFSRGGQSPQPQHESFPQISRLVKVD 121

Query: 140 VYIPGCPPTPAATLYGFAMALG 161
            ++PG PP P          + 
Sbjct: 122 AFVPGSPPGPEMAYNVIRAFVE 143


>UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NPL1_HALUD
          Length = 266

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 47/161 (29%), Gaps = 30/161 (18%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAE------RFGIKVVPSPRHADILLFTGAVTR 90
              V   D  GC G ++++      L D         F   +       +I    G V  
Sbjct: 6   KPRVAFFDFTGCEGDQLQVINLEDRLLDLVEVVEVVSFREAMTEHSDEYEIAFVEGGVAT 65

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHD------LYCV 128
           A      R      +  + ++ G+C   GGI                + +       Y +
Sbjct: 66  AHDE--RRLTDIRDNADVVVALGSCAAFGGINALRNHQDFETVKERVYGEDADSITSYPI 123

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
               + ++ V+  IPGCP      L      +   E  I  
Sbjct: 124 ARPIEDVIEVEYEIPGCPIDREEFLGAVTALVNGAEPSIPN 164


>UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Desulfohalobium retbaense DSM 5692
           RepID=C8X546_DESRD
          Length = 334

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 76/255 (29%), Gaps = 68/255 (26%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG--------IKVVPSPRHA------ 79
           + R   +     G C GC++ +  T   L +             +    S   A      
Sbjct: 1   MSRRMSIAMNWAGACGGCDVSLLDTQGKLLELTAVADVVYWPVALDYKRSDLEALPEKSV 60

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG------------IFHDLYC 127
           DI LF G V       A  A +     ++ ++YGAC   GG            IF   Y 
Sbjct: 61  DIGLFNGVV--RTSEQAEDARRLRERCRVLVAYGACACHGGIPGLANQSDREEIFRVAYQ 118

Query: 128 -------------------------------VWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
                                                ++V VD ++PGCPPTP   L   
Sbjct: 119 DTVSTDNPDQIRPQQRTPVPGGEVTLPAFHDSVRALHQVVDVDYFLPGCPPTPERILD-- 176

Query: 157 AMALGLLEQKIHARG--PGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADD 214
              LG+++         P      P   L  +     R +  R  R    YR    +AD 
Sbjct: 177 --LLGVVQAYNAGDDLPPAGSILAPEATLCQECP---RAETRRAGRMPRLYRPHEIVADP 231

Query: 215 YLTQLGQGEEQVARW 229
               L QG   +  +
Sbjct: 232 ETCFLEQGVICMGPF 246


>UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Coriobacteriaceae
           RepID=C7MNR7_CRYCD
          Length = 439

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 27/154 (17%)

Query: 81  ILLFTGAVTRAMRSPALRA---------WQSAPDPKICISYGACGNSGGIFHDLYCVWG- 130
           IL++ GAV       ALR           ++AP     ++ G+C  +GG         G 
Sbjct: 125 ILIYEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAGA 184

Query: 131 -GTDKIVP------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEIL 183
            G +K +         V IPGCP  P   +      + ++ +        +      E +
Sbjct: 185 VGVEKFLKESGINVPVVNIPGCPANPEWLVAVLVDVV-MMNKLPALDYENKPALIFDETI 243

Query: 184 HGDMVQPLRVKV---------DREARRLAGYRYG 208
           H +  +    +          + EA+    Y  G
Sbjct: 244 HDNCERRGHFENGEFVYQFGSEEEAKNYCLYAMG 277


>UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YFX1_THEYD
          Length = 318

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 50/182 (27%), Gaps = 60/182 (32%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAE-RFGIKV-------------VPSPRHA-DI 81
              +     GGC GC+I +      L D      I                  P  + D+
Sbjct: 3   KPKLAYYLAGGCGGCDIAVVDISEMLVDVALAVDIVFWAPTVADVKYKDLEAMPDGSIDV 62

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDL 125
            LFTG V  +      +        K+ I++G C   GGI                + + 
Sbjct: 63  GLFTGNVRNSEHEHIAKVL--RNKCKVLIAFGICAACGGIKGLVNLHTTDELLDKAYVNT 120

Query: 126 YCV---------------------------WGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
           +                                 D++V VD YI GCPP        F  
Sbjct: 121 FSTDNPNKELPQTTCVVDGKYELTLPTLMYARPLDEVVKVDYYIGGCPPHYEHVKAAFTA 180

Query: 159 AL 160
            L
Sbjct: 181 LL 182


>UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NU23_HALUD
          Length = 191

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 49/174 (28%), Gaps = 45/174 (25%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS--------PRHADILLFTGAVTRA 91
           V  V  GGC+GC +E       L D     + +V S           AD+ +  G VT  
Sbjct: 17  VATVCLGGCSGCHMEFLNVDHGLVDLVE-EVDIVASHMIVDEKGVPEADVGIAEGVVTNE 75

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGI----------------------------FH 123
                        +    +++G C    GI                            F 
Sbjct: 76  ENVEVAEEL--RENCDTVVAWGDCAALRGIMSLRNYQDRDEMLEETFMGEADDESEVPFG 133

Query: 124 DLYCV------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           D   V          D+ + VDVY+PGCPP                  +I    
Sbjct: 134 DDEGVPKLLEDARPLDEYIDVDVYVPGCPPDAEVMKESLEALARGETPEIEGDK 187


>UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Candidatus
           Desulforudis audaxviator MP104C RepID=B1I576_DESAP
          Length = 317

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 50/177 (28%), Gaps = 59/177 (33%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAER-FGIKVVP---SPRHADI----------L 82
              +       C GC++ I      + D      I   P     ++AD+           
Sbjct: 3   KLKLASYWAAACGGCDVAILDIHEKIVDVAAVADIVFWPIAVDFKYADVEGYEDGFIDVC 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI--------------------- 121
           LF GA+  +      +        K+ +++G+C  SGGI                     
Sbjct: 63  LFHGAIRNSEGEHVAKLL--RKKSKVMVAFGSCAISGGIPGLANFKQKNDIFYRVYIESQ 120

Query: 122 ----------------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
                                   + Y        +V VD ++PGCPPT A      
Sbjct: 121 STQNPEKVYPQTHYAVPEGVLELPEFYKEVKSLSDVVDVDYFMPGCPPTSAQIWAVI 177


>UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1
           Tax=Sulfurihydrogenibium azorense Az-Fu1
           RepID=C1DUT4_SULAA
          Length = 249

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 29/145 (20%)

Query: 43  VDCGGCNGCEIEIFATLSPLFDAERFGIKV------VPSPRHADILLFTGAVTRAMRSPA 96
                C+GC++        L + E F I        V +  + D     G+V+       
Sbjct: 6   FKFSSCDGCQLSFINLSGELAELENFSIDYFLEGQSVNNYEYFDFSFVEGSVS--TTEEI 63

Query: 97  LRAWQSAPDPKICISYGACGNSGGI-----FHD------LYCVWG----------GTDKI 135
            R        K+ +  GAC  SGG+     F +      +Y                 ++
Sbjct: 64  ERIKDIRERSKVLVGIGACAVSGGVQSIRNFRNIDDIKTVYNTVDITKNVLENALPISQV 123

Query: 136 VPVDVYIPGCPPTPAATLYGFAMAL 160
           V VD  I GCP +           L
Sbjct: 124 VKVDFEIRGCPVSTDVVKDFINSIL 148


>UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK1_9DELT
          Length = 178

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 50/171 (29%), Gaps = 55/171 (32%)

Query: 37  SAYVYRVDCGGCNGCEIEIFA--------------TLSPLFDAERFGIKVVPSPRHADIL 82
              V  V   GC+GC +                    SPL D + F       P   D+ 
Sbjct: 4   RLRVATVWLDGCSGCHMSFLDMDELLLELAPRLELAYSPLVDRKEF-------PDRVDLA 56

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-------------------FH 123
           L  GAV+        R        ++ ++ G C   G +                     
Sbjct: 57  LLEGAVSTPEDEAKARL--VRAHSRLVVALGDCACQGNVPALRNRLDNEQLLDLVYRQQA 114

Query: 124 DLYCVWG-------------GTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
           D                      +++ VD+++PGCPP PAA +      L 
Sbjct: 115 DGPAAAPPDRNVPPLLTHSLPLHRVIAVDLFLPGCPPPPAAIVRALTAVLD 165


>UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKF2_SYNFM
          Length = 300

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 49/162 (30%), Gaps = 51/162 (31%)

Query: 48  CNGCEIEIFATLSPLFD-AERFGIK------------------VVPSPRHADILLFTGAV 88
           C GCE+ I      L D  ER  I                   VV  PR AD+ + +G +
Sbjct: 14  CAGCEVAILDQGELLLDILERISIVHAPILMDSKYRDPAGDSDVVSIPR-ADVGIVSGGI 72

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGI--------------------------- 121
                     A        I I+ G+C   GGI                           
Sbjct: 73  --RTEHGLAVAKAVRESCDILIANGSCACMGGIPSLANLVPPDVLKQGVPNLEHGVEDGD 130

Query: 122 --FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
                L       +++VPVD+++PGCPP            L 
Sbjct: 131 FELPPLTARVAAINEVVPVDIFLPGCPPPTHLFAAALQAVLE 172


>UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI
          Length = 180

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 40/152 (26%)

Query: 47  GCNGCEIEIFATLSPLFDA-ERFGIKVVP------SPRHADILLFTGAVTRAMRSPALRA 99
           GC+GC +        L +  E   I   P       P   D+ +  G+++        +A
Sbjct: 16  GCSGCHMSFLDLDERLIELVEHVEIVYSPLVDTKELPARVDVGILEGSISSEDD--LEKA 73

Query: 100 WQSAPDPKICISYGACGNSGG------------IFHDLY-------------------CV 128
                     +S G C  +G             +F   Y                     
Sbjct: 74  RLFRERCTRLVSLGDCAVTGNVPAMRNHFKLADVFDRAYRENVTLQPQIPTRRVPALLTP 133

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                  V VDV++PGCPP+  A  +  +  +
Sbjct: 134 VKPVHGEVKVDVFVPGCPPSADAIWHVLSELI 165


>UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Candidatus Korarchaeum cryptofilum OPF8
           RepID=B1L5Y5_KORCO
          Length = 319

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 54/181 (29%), Gaps = 59/181 (32%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVP-------------SPRHADIL 82
            A +    C  C GCE         LFD  E   I + P                  D+ 
Sbjct: 3   KAKIAFYWCASCGGCEEAQVDLADKLFDLIEAADIVLWPVAMDFKKEDVEKVGDGSIDVA 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLY 126
           +  G +  +     ++        K+ I+YG+C + GGI                + +  
Sbjct: 63  IINGGIRTSEHEEMVKLL--RRKSKLVIAYGSCAHMGGIPALANAYTRESILKYVYEEAP 120

Query: 127 CVWG---------------------------GTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
            V                               D ++ VD YIPGCPPTP  T    +  
Sbjct: 121 TVTNPEGKRPKTRVSVDGMDFELPEFLEYLDPLDAVIDVDYYIPGCPPTPEITWEAVSSI 180

Query: 160 L 160
           L
Sbjct: 181 L 181


>UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Tax=Thermococcaceae
           RepID=B6YU80_THEON
          Length = 265

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 23/102 (22%)

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FH 123
           DI    G+V+           +   + KI ++ GAC   GG+                + 
Sbjct: 54  DIAFIEGSVS--TEEEVELVKKIRENAKIVVAVGACATQGGVQSWEKDKSLEELWKAVYG 111

Query: 124 DL-----YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
           D        +    +  + VD  I GCPP     +Y     L
Sbjct: 112 DGKVKFEPKMAEPLENYIKVDYRIYGCPPEKKDFIYAIGTFL 153


>UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=Geobacter
           RepID=Q39QE2_GEOMG
          Length = 316

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 75/269 (27%), Gaps = 71/269 (26%)

Query: 48  CNGCEIEIFATLSPLFDAERFGIKVVPSPRHADI--------LLFTGAV-TRAMRSPALR 98
           C+GC + I      +       + +   P   D+         L +GA+ T   R  A+ 
Sbjct: 14  CSGCHVAIVDLHEKILAVLE-SVTIQRCPVLTDVKDYPKAKLGLVSGAIRTEHDRHAAI- 71

Query: 99  AWQSAPDPKICISYGACGNSGGIFHDL--------------------------------Y 126
             +      + I++G+C   GGI                                     
Sbjct: 72  --EMRKSCDLIIAWGSCAVYGGIAGAGNVHSRQEIIDAVYIGNKTTATHAPPTKEVSALE 129

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH---------ARGPGELDE 177
                 D ++ VD+Y+PGC P PA         L     +            R   + + 
Sbjct: 130 PSVSPLDSVIDVDLYLPGCAPHPAFVFDALLALLEGRSPRTATGESVCARCRRKMEKTEV 189

Query: 178 QPAEILHGDMVQPLRVKVDREARRLAGY-RYGRQIADDYL----------TQLGQGEEQV 226
                    +  P R  + +      GY   G    D  +          +       QV
Sbjct: 190 DRIRKNSEGVPDPDRCFLSQ------GYLCMGSVTLDRCMSPCPLNGIPCSGCAGATMQV 243

Query: 227 ARWLEAENDPRLNEIVSHLNHVVEEARIR 255
                 +    + E +S L  +  EA +R
Sbjct: 244 LAEPNRDIRTEIAERMSRLTEIPREAIVR 272


>UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH
          Length = 330

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 53/193 (27%), Gaps = 34/193 (17%)

Query: 37  SAYVYRVDCGGCNGCE------IEIFATLSPLFDAERFGIKVVPSPRHAD---------- 80
              V  +  G C GC         + A +      E     +  S   A+          
Sbjct: 72  RPSVVWLHFGECTGCSEAFLRTPNVGAIILETISVEYHETIMAASGHQAEKSLEQAIKTH 131

Query: 81  ----ILLFTGAVTRAMRSP---------ALRAWQSAPDPKICISYGACGNSGGI--FHDL 125
               I +  G++  A                A    P   + I+ G C   GGI      
Sbjct: 132 KGKFICVVEGSIATAYNGAYGKVGGRTFLEIANDVIPKAAVTIALGTCAAYGGIPSAAPN 191

Query: 126 YCVWGGTDKIVPV-DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
              + G    + V  + I GCPP P   L      L    + I     G      AE +H
Sbjct: 192 PGGYKGVKDAIGVATINISGCPPNPLNLLSTIVKYLNK--ETIELDELGRPLFAYAETVH 249

Query: 185 GDMVQPLRVKVDR 197
               +    + D 
Sbjct: 250 DRCPRLKHFENDE 262


>UniRef50_Q85WY3 ORF82a n=1 Tax=Pinus koraiensis RepID=Q85WY3_PINKO
          Length = 82

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 115 CGNSGGIFH-------DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
           C   G +++       D Y      DK++PVDVY P CP  P   +         
Sbjct: 21  CSCPGSMYYHIEMFGTDSYSTVHEVDKLIPVDVYSPDCPTEPEVIIDAITKLRER 75


>UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehalococcoides
           RepID=D2BG44_DEHSV
          Length = 354

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 37/132 (28%), Gaps = 22/132 (16%)

Query: 81  ILLFTGAVTRAMRSP--------------ALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           +L+  G+V                            AP     ++ G C   GGI     
Sbjct: 112 VLVIEGSVPLKDDGVYAEIGEKDGEGITMLEHVLNLAPKALAVVAAGTCSAFGGITASAP 171

Query: 127 CVWGG--TDKIVP------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
              G     +I+         V +PGCPP P   +   A  L      +     G     
Sbjct: 172 NPTGAKAVSEILKEHNITTPVVNLPGCPPHPDWVVGTLATVLMSGLDALDLDDMGRPKAY 231

Query: 179 PAEILHGDMVQP 190
             ++LH    + 
Sbjct: 232 YGKLLHDQCPRR 243


>UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clostridia
           RepID=Q3ABV6_CARHZ
          Length = 354

 Score = 57.0 bits (136), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 61/220 (27%), Gaps = 41/220 (18%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-----LFDAER 67
               + + +S+  +  +L    K    V  +    C GC + +  ++ P     L +   
Sbjct: 16  TAATLGLSQSVPEVAYALENAAKGQPPVIWIQGASCTGCSVSLLNSVHPDIKEILLEIIN 75

Query: 68  FGIKVVPSPRHADI-----------------LLFTGAVTRAM--------------RSPA 96
                  S     +                 L+  GAV                     +
Sbjct: 76  LKFHPNISAATGHVAVEAFLGEAEKNKGKFFLVVEGAVPTKDNGVYCSIGEKDGRELYFS 135

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPV--DVYIPGCPPTPAAT 152
               +     K  I+ G C   GGI        G     +++     + IPGCPP P   
Sbjct: 136 EVVKELGEKAKAVIAIGTCAAFGGIPAADPNPTGCVPVTEVIDPKKVLNIPGCPPHPDWF 195

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLR 192
           +   A  L L  +       G        I+H +  +   
Sbjct: 196 VGSLAHVL-LYNELPKTDKFGRPKMFYEGIIHDNCPRRQY 234


>UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R9W3_AMMDK
          Length = 319

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 50/184 (27%), Gaps = 59/184 (32%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPS------------PRHA- 79
           +     +       C GC++ I  T     D  +   I  +P             P    
Sbjct: 1   MAEKLKIASYWAADCGGCDVAILDTHEKFLDIVQAADIVFMPIAVDIKEKDVEAFPDGYI 60

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG----------------IFH 123
           D+  F GA+  +      +        K+ +++G+C   GG                ++ 
Sbjct: 61  DVCFFHGAIRNSENEHMAKLL--RRKSKVLVAFGSCAMMGGVPGLANFKDREGILSRVYF 118

Query: 124 DLYCVWGG---------------------------TDKIVPVDVYIPGCPPTPAATLYGF 156
           +                                     +V VD ++PGCPP     +  F
Sbjct: 119 ESPSTDNPDKVLPQTETQVREGVLTLPAFYEEVKTLADVVDVDYFMPGCPPASHQIVNVF 178

Query: 157 AMAL 160
              +
Sbjct: 179 QAIV 182


>UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ferroglobus
           placidus DSM 10642 RepID=C8S807_FERPL
          Length = 299

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 50/169 (29%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA-----------DILLF 84
           +   +      GC+GC +  F        +ERF +   P   ++           D+   
Sbjct: 2   KKIRLAFYTASGCSGCILSFFDLEEFFLSSERFSVVWAPMFTNSKLEDLEKIERIDLTFI 61

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI--FHDLYC--------------- 127
            G++  +     ++        +  ++ G C   GG+    + Y                
Sbjct: 62  EGSIRLSEHEEIVKIL--REKSEKVVALGTCAVFGGVPGLSNFYSDEEILSDVFDSDENA 119

Query: 128 --------------------VWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
                                    ++++ VD ++PGCPP+    L   
Sbjct: 120 PKPRTLLDGKYELTLPEFKDEMKRVEEVIEVDHFVPGCPPSKNQLLKII 168


>UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=63
           Tax=Proteobacteria RepID=PHNS_DESDA
          Length = 315

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 62/250 (24%), Gaps = 54/250 (21%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK----------------------V 72
            R   V  +    C GC   +  T  P  D                              
Sbjct: 53  GRRPSVVYLHAAECTGCSEALLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAA 112

Query: 73  VPSPRHAD--ILLFTGAVTRAM-----RSPALRAWQSA----PDPKICISYGACGNSGGI 121
           V  P   D  I L  GA+   M            +       P  K  +S G C   GGI
Sbjct: 113 VNGP---DGFICLVEGAIPTGMDNKYGYIAGHTMYDICKNILPKAKAVVSIGTCACYGGI 169

Query: 122 --FHDLYCVWGGTDKIVP----VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGEL 175
                      G +          + +PGCPP P   +      L    QKI     G  
Sbjct: 170 QAAKPNPTAAKGINDCYADLGVKAINVPGCPPNPLNMVGTLVAFLK--GQKIELDEVGRP 227

Query: 176 DEQPAEILHGDMVQPLRVK--------VDREARR-LAGYRYGRQIADDYLTQLGQGEEQV 226
                + +H    +                EAR+    Y  G +  + Y     +     
Sbjct: 228 VMFFGQSVHDLCERRKHFDAGEFAPSFNSEEARKGWCLYDVGCKGPETY-NNCPKVLFNE 286

Query: 227 ARWLEAENDP 236
             W  A   P
Sbjct: 287 TNWPVAAGHP 296


>UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU12_9AQUI
          Length = 252

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 48/158 (30%), Gaps = 27/158 (17%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH----ADILLFTGAVT 89
           +K    V       C+GC+         L++   F    +    +     DI    G+V+
Sbjct: 1   MKNKLRVGVFKLSSCDGCQAIFLDL-PSLWEHLDFRYWFLGKSENKLEPIDIAFVEGSVS 59

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI-----------FHDLYC---------VW 129
                 A    +     ++ ++ GAC  SGGI           F  +Y            
Sbjct: 60  TQ--EEAEFIKEVREKARLLVTIGACATSGGIQALRNFGSLEEFSSVYPKPEFIKVLKRS 117

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
               + V VD  I GCP  P          L     +I
Sbjct: 118 TPISEHVKVDYEIYGCPINPHILENFVKALLHSRRPEI 155


>UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subunit n=2
           Tax=Campylobacter RepID=B9KFD7_CAMLR
          Length = 544

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 67/220 (30%), Gaps = 54/220 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP-----LFD---AERFGIKVVPSPRHA--------- 79
           S     +    C GC   +  T  P     +FD    E     +  S   A         
Sbjct: 62  SLIWLHL--SECTGCSESLLRTSLPDFLDLIFDFISLEYHETFMSASGHQAESHLEEVLE 119

Query: 80  --DILL-FTGAVT-------------RAMRSPALRAWQSAPDPKICISYGACGNSGGI-- 121
             D LL   G V                      +    A + K   + G C + GGI  
Sbjct: 120 KKDFLLAVEGGVCAIDPFYLTIGAHGENGYEILQKC---AKNAKTIFAMGTCSSFGGIQA 176

Query: 122 FHDLYCVWGGTDKIVPVDV-YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
            H       G  K++   V  IPGCPP+ A  +      +      +  +     D+   
Sbjct: 177 AHPNPTKSIGISKVLEEKVINIPGCPPSDANIIAALCFYI------LFEQDMALDDQNRP 230

Query: 181 EILHGDMVQPLRVKVDREARRLAG----YRYGRQIADDYL 216
             L+G  +  L    +R+A+  AG         +I + Y 
Sbjct: 231 LALYGKCLHDL---CERKAKFEAGNFAQSFDDEKIKEGYC 267


>UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hydrogenobaculum sp.
           Y04AAS1 RepID=B4U5S1_HYDS0
          Length = 320

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 51/179 (28%), Gaps = 48/179 (26%)

Query: 28  ASLLKKIKRSAYVYRVDCGG--CNGCEIEIFATLSPLF-DAERFGIKVVPSPRHAD---- 80
             ++  +K+   +  +   G  C  C   +  + SP+F D               D    
Sbjct: 37  NDIINALKQKPRIPVLWFHGLECTCCSESLMRSSSPVFSDMVSL------ISLEYDDLIS 90

Query: 81  ----------------------ILLFTGAVTRAMRSPA---------LRAWQSAPDPKIC 109
                                 IL   G++T                    ++A   K  
Sbjct: 91  ASCGENLLNYKKKIIEQYKGNYILAIEGSITEFEDGACCMVGGRSFNEELLEAAEGAKAI 150

Query: 110 ISYGACGNSGGI--FHDLYCVWGGTDKIVP--VDVYIPGCPPTPAATLYGFAMALGLLE 164
           I++G+C + G +   +         D I+     V +PGCPP P          L   E
Sbjct: 151 IAWGSCASFGCVQVAYPNPTKSSSVDTIIKNKPIVKVPGCPPIPEVMASVIVYMLLKDE 209


>UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Desulfitobacterium
           hafniense RepID=B8FWY3_DESHD
          Length = 375

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 42/197 (21%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSP------------LFDAE--------RFGIKVVPS 75
               +  V+ G C G  I +    SP             +D           + + +   
Sbjct: 38  NKLPIIMVETGTCTGDSISLDNIWSPTLSDIFTNITEWRYDWTMMQSQGELAYDVLLEIE 97

Query: 76  PRHAD--ILLFTGAVTRAMRSP--------------ALRAWQSAPDPKICISYGACGNSG 119
              A   +LL  G++ R                        +     K  ++ G C   G
Sbjct: 98  KNQAHEFVLLVQGSMIRRDGGHYNYAGLENGQLITGLDLVRRLGLKAKYVVAVGHCATYG 157

Query: 120 GIFHDLYCVWG--GTDKIVPVD--VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGEL 175
           G            G   I+P    + + GCP  P   +         L  +      G  
Sbjct: 158 GPVAGYPNPTQSTGVQNILPERRVINVSGCPAHPDWIMGTLLHL--ALYGEPELEKFGRP 215

Query: 176 DEQPAEILHGDMVQPLR 192
                E +H +  +   
Sbjct: 216 KMFFGETIHNNCPRRRY 232


>UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit
           [Precursor] n=1 Tax=Desulfotalea psychrophila
           RepID=Q6ARY6_DESPS
          Length = 300

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 39/193 (20%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL-- 62
           L  + +  + +  +    +A    +L     +  ++       C+GC I +  + SP   
Sbjct: 12  LSAKMSVVLGLGSSAIPQVAEALEALTTGRSKVLWL---QAQSCSGCSISMLDSESPGPA 68

Query: 63  -FDAERFGIKVVPSPRHAD-----------------ILLFTGAVTRAMRSPALR------ 98
               +   +    +   A                  IL+  G++   M    +       
Sbjct: 69  ELLTQYISLLFHHTLSAATGESCMHIVRKSVQQGGYILVVEGSIPAGMPEACMMGGIPVG 128

Query: 99  --AWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT--------DKIVPVDVYIPGCPPT 148
               Q+A      I+ G C   GGI        G          +KI    + IPGCP  
Sbjct: 129 ELIKQAAERADYVIALGTCAAFGGIPAAEGNPTGAVPLGPFLQANKIKTPIINIPGCPSH 188

Query: 149 PAATLYGFAMALG 161
           P   +        
Sbjct: 189 PDWLVGTLVHLCK 201


>UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Allochromatium vinosum DSM 180 RepID=C5S9B0_CHRVI
          Length = 251

 Score = 53.5 bits (127), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 48/162 (29%), Gaps = 31/162 (19%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSP------LFDAERFGIKVVPSPRHADILLFTGAVT 89
               V   +   C GC++ +  TL        + +  +F   +        I    G+ T
Sbjct: 1   MKPKVAFFEFTSCEGCQLTVLDTLQRHPELLEVIEIVQFREAMSERGEDYQIAFIEGSCT 60

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------------FHDLYC 127
           R       +  +     +I ++ GAC + GGI                      + + Y 
Sbjct: 61  RPSDEA--KIREIREQAQIVVALGACAHLGGINAIRNRMPLEQTREYVYGDKKDWFETYP 118

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
                  ++ VD  IPGCP             L   +  I  
Sbjct: 119 -ARPLSAVIEVDAVIPGCPIDRKEFATAVTHLLQGRKPAIPD 159


>UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GED7_9FIRM
          Length = 254

 Score = 53.5 bits (127), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 48/159 (30%), Gaps = 29/159 (18%)

Query: 38  AYVYRVDCGGCNGCEIEIFAT------LSPLFDAERFGIKVVPS-PRHADILLFTGAVTR 90
             V       C+GC++E          L  L D   F +    + P   DI    G++  
Sbjct: 5   PKVAIFKFASCSGCQLEFLNLEPVLLDLLGLVDLTHFVMARRENKPGPYDIGFVEGSIVN 64

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG-------------------- 130
                  R  Q+  D  + ++ GAC   GG+                             
Sbjct: 65  --PEDIERLKQARRDCGLLVAIGACACHGGLQSLNNGTPQREVEARVYEHPAEVSSLKSY 122

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
             D+ V +D  + GCP      +     AL  +  +I  
Sbjct: 123 PVDEYVDIDAKLSGCPINKNELVEFVKSALLGVTPRIRP 161


>UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 Tax=Bacteria
           RepID=HOXY_RALEH
          Length = 209

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 45/183 (24%), Gaps = 45/183 (24%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS------ 75
               M  +L    +    V  +   GC GC +        L         +  S      
Sbjct: 15  PATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLPLLEKVTLLRSSLTDIKR 74

Query: 76  -PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------F 122
            P    I    G V+               +  I IS GAC   GG+             
Sbjct: 75  IPERCAIGFVEGGVSS--EENIETLEHFRENCDILISVGACAVWGGVPAMRNVFELKDCL 132

Query: 123 HDLY------------------------CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
            + Y                               ++V +D +IPGCPP   A       
Sbjct: 133 AEAYVNSATAVPGAKAVVPFHPDIPRITTKVYPCHEVVKMDYFIPGCPPDGDAIFKVLDD 192

Query: 159 ALG 161
            + 
Sbjct: 193 LVN 195


>UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound
           hydrogenase small subunit)
           (Hydrogen:quinoneoxidoreductase) n=3 Tax=Bacteria
           RepID=C1DUF2_SULAA
          Length = 416

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 16/92 (17%)

Query: 81  ILLFTGAVTRAMRSP----------ALRAWQSAPDPKICISYGACGNSGGI---FHDLYC 127
           +L   G++   M               R  + A D K  I+ GAC + GG+   + +   
Sbjct: 166 LLFVEGSIPVKMEYAFTTGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTG 225

Query: 128 VWGGTDKI--VPVDVYIPGCPPTPAATLYGFA 157
             G  D +  VPV V IP CP  P   +    
Sbjct: 226 AVGVMDVVSGVPV-VNIPACPANPVNIVGVIM 256


>UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n=17 Tax=Bacteria
           RepID=PHNS1_DESVH
          Length = 317

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 42/166 (25%), Gaps = 42/166 (25%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK----------------------V 72
            R   V  +    C GC   +     P  D                              
Sbjct: 54  SRRPSVVYLHNAECTGCSESVLRAFQPYLDELILDTISLDYHETIMAAAGDAAEAALHQA 113

Query: 73  VPSPRHAD--ILLFTGAVTRA---------MRSPALRAWQSAPDPKICISYGACGNSGGI 121
           V +P   D  I +  GA+  A           +         P  K  I+YG C   GG+
Sbjct: 114 VANP---DGFICIVEGAIPTADNGIYGKVANHTMLSICSDIVPKAKAVIAYGTCATFGGV 170

Query: 122 --FHDLYCVWGGTDKIVPV----DVYIPGCPPTPAATLYGFAMALG 161
                      G +  +       + + GCPP P   +      L 
Sbjct: 171 QAAKPNPTGAKGLNDALKHLGVNAINLAGCPPNPYNLVGTLVYYLK 216


>UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=29 Tax=Bacteria
           RepID=Q2J4E9_FRASC
          Length = 278

 Score = 53.1 bits (126), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 49/168 (29%), Gaps = 34/168 (20%)

Query: 45  CGGCNGCEIEIFAT------LSPLFDAERF---GIKVVPSPRHADILLFTGAVTRAMRSP 95
              C+GC++ +         L+   D   F       V  P   D+ L  G+VT      
Sbjct: 25  FASCDGCQLTLLDCEDELLSLAGEIDVSYFLEASSATVDGP--YDLSLVEGSVT--TEQD 80

Query: 96  ALRAWQSAPDPKICISYGACGNSGGI---------------------FHDLYCVWGGTDK 134
             R  Q     +  ++ GAC  +GGI                     +            
Sbjct: 81  VERIHQVRAASRRLVTIGACATAGGIQALRNFADVGDFLAAVYATPAYVSTLATSTPIST 140

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
            V VD  + GCP  P   L   +  L      I +       ++   +
Sbjct: 141 HVRVDFELQGCPINPRQLLEVISAFLARRRPNISSSAVCTECKRRGTV 188


>UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Candidatus Korarchaeum cryptofilum OPF8
           RepID=B1L3Q1_KORCO
          Length = 258

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 43/182 (23%)

Query: 45  CGGCNGCEIEIFATLS---------PLFDAERFGIKVVPSPRHAD----ILLFTGAVTRA 91
                GC+ E    L           L D   F +    S +  D    I    G+V+  
Sbjct: 8   FYSLTGCQGEYLTILGMEDILLDLLSLVDIAEFKL---ASSKEYDGKVDIAFVEGSVS-- 62

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------HDLYCVWG-- 130
                    +   + KI ++ G C   GGI                     +LY   G  
Sbjct: 63  TERDLEYIKRIRGNSKILVALGDCAVWGGIQASTSGQDPKELMRSVYKTEKNLYGFLGEH 122

Query: 131 -GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP---GELDEQPAEILHGD 186
            G  ++VPVD  I GCP             +  ++ ++         ++ E P  I+   
Sbjct: 123 KGISEVVPVDYEIQGCPIEGKEFARVLIDLVRDVKPELPDYPVCIECKVREIPCLIVERG 182

Query: 187 MV 188
           + 
Sbjct: 183 LP 184


>UniRef50_A7IHL6 Ni Fe-hydrogenase III large subunit-like protein n=4
           Tax=Proteobacteria RepID=A7IHL6_XANP2
          Length = 110

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            L+   D  R G+     PR A++LL    +   M   A  A+   P P+  +  G    
Sbjct: 41  ALAAGLDLSRAGLTEADGPRQANVLLVMLPLPAPMLKAATVAYAQMPRPRTVLVLGEGVI 100

Query: 118 SGGIFHDL 125
           +     D 
Sbjct: 101 APLPEPDS 108


>UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Rhodomicrobium vannielii ATCC 17100
           RepID=D2LGK5_RHOVA
          Length = 358

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 51/220 (23%), Gaps = 54/220 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP----LFDAERFGIKVVPSPRHA------------- 79
              +  +  GGC GC + +    SP      D  R  +   PS   A             
Sbjct: 23  RLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYHALIARIL 82

Query: 80  ------DILLFTGAVTRAM-------------RSPALRAWQSAPDPKICISYGACGNSGG 120
                 DIL   GA+ R               +       + A      I+ G+C   GG
Sbjct: 83  SGQQPLDILCVEGAILRGPNGTGRFHLQPGTGKPVMQLVAELAACAGHVIAIGSCTAYGG 142

Query: 121 IFHDLYCVWGGTDKIVP------------------VDVYIPGCPPTPAATLYGFAMALGL 162
           +      V                             + I GCP  P   +         
Sbjct: 143 VSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPAINIAGCPTHPGWIVETLVQLGDG 202

Query: 163 LEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL 202
                     G        ++H    +    +    A+  
Sbjct: 203 TFSASDLDTYGRPRFYADHLVHHGCTRNEFYEYKASAKEP 242


>UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing
           hydrogenase), gamma subunit n=3 Tax=Euryarchaeota
           RepID=Q0W6U0_UNCMA
          Length = 306

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 32/140 (22%)

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGG------------IFHDLYCVWGG------- 131
             +    R  +     K  I++G C   GG            I + +Y    G       
Sbjct: 61  RNKENMERVKKLRQRAKTVIAFGTCACYGGVSGLSILHSRDEILNGVYTNRQGTTTNVIP 120

Query: 132 -------------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
                           ++ VD YI GCPP            +      +  +      ++
Sbjct: 121 NQDIPDLLYRGYAVGDVIKVDYYITGCPPKEFFLRQILLPLIEGRIPDLQKKSVCSECDR 180

Query: 179 PAEILHGDMVQPLRVKVDRE 198
              ++    ++     V  E
Sbjct: 181 EMVLVKDWKIKRRYEGVPEE 200


>UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteobacteria
           RepID=C3XGH6_9HELI
          Length = 425

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 50/184 (27%), Gaps = 36/184 (19%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG 69
           A  +   + +  + A + A   +   R   ++ +    C GC   +  +  P  D+  F 
Sbjct: 93  AAVVTASIGLPATFAPLTARAAELADRVPIIW-LHMAECTGCSESLLRSEDPCIDSIIFD 151

Query: 70  I--------KVVPSPRHAD--------------ILLFTGAVTRAMRSPALR--------- 98
                     +  S   A+              +++  G + +                 
Sbjct: 152 YVSMEYHETIMAASGYQAEKSLEDAVKKYDGRYVMMVEGGIPKDTEYFLTIGASGRTGAE 211

Query: 99  -AWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV-PVDVYIPGCPPTPAATLY 154
                A       + G C + GG+               I+    + +PGCPP     + 
Sbjct: 212 ECRHVAKHAAAIFAIGTCSSFGGVQAAAPNPTNAHPLSDIIDKKVINVPGCPPNEKNIVG 271

Query: 155 GFAM 158
               
Sbjct: 272 TLMQ 275


>UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n=10
           Tax=Deltaproteobacteria RepID=PHSS_DESBA
          Length = 315

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 49/177 (27%), Gaps = 50/177 (28%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPL-----FDAERFGIKVV-----PSPRHADI 81
           +  K++  ++ V   GC GC + +   + P       D                   A +
Sbjct: 35  EGAKKAPVIW-VQGQGCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHM 93

Query: 82  ------------LLFTGAVT-------------------RAMRSPALRAWQSAPDPKICI 110
                       LL  GA+                        +        AP     +
Sbjct: 94  YEIAEKFNGNFFLLVEGAIPTAKEGRYCIVGETLDAKGHHHEVTMMELIRDLAPKSLATV 153

Query: 111 SYGACGNSGGIFHDLYCVWG--------GTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
           + G C   GGI      V G          +KI  + V +PGCPP P   +     A
Sbjct: 154 AVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAA 210


>UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2
           Tax=Aciduliprofundum boonei T469 RepID=B5IEA4_9EURY
          Length = 248

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 29/161 (18%)

Query: 43  VDCGGCNGCEIEIFATLSPLFDAERF-GIKVVPSPRHAD-----ILLFTGAVTRAMRSPA 96
                C GC ++     + + +  ++ GI      +  +     I    G  T       
Sbjct: 6   FSLSCCEGCSVQFLNLENEILEILKYMGINNFRLAKEINEWPVEIAFVEGTPTNRDE--I 63

Query: 97  LRAWQSAPDPKICISYGACGNSGGI--------------FHDLYCVWGGTDK-----IVP 137
           ++  +     KI ++ G C  +GG+               ++        D       V 
Sbjct: 64  IKLLKIRKYSKILVALGTCAATGGVPAIVNTLEKKEAMKIYNGVPPKIPIDAKQLKYYVD 123

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           VD  + GCP +           L  L +    +      E 
Sbjct: 124 VDYILYGCPFSKEELKELITSVL--LGKGFRNKRYSVCVEC 162


>UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes RepID=A5I2W4_CLOBH
          Length = 290

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 17/109 (15%)

Query: 81  ILLFTGAVTRAMR--------------SPALRAWQSAPDPKICISYGACGNSGGI--FHD 124
           ILL  GAV+                  +       +    K  ++ G C + GGI     
Sbjct: 97  ILLVDGAVSTKENGYYNIIANYRGRPVTALEAIKMAGEKAKYVVTVGTCSSYGGISAAKP 156

Query: 125 LYCVWGGTDKIV-PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
                   D ++    + +PGCP  P   +   A  +   + ++  +G 
Sbjct: 157 NPSGSKSVDAVINKEVIKLPGCPCHPDWVVGTLAHLVTYGKPELDNKGR 205


>UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquificaceae
           RepID=A7BI79_HYDTH
          Length = 345

 Score = 51.2 bits (121), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 81  ILLFTGAVTRAMRSP---------ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG- 130
           IL+  G+V+   +                ++A +  + I+ G+C + GGI H      G 
Sbjct: 114 ILIVEGSVSPRNKGVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGA 173

Query: 131 -GTDKIV--PVDVYIPGCPPTPAATLYGF 156
               +I+     V IPGCPP     +   
Sbjct: 174 VPVSQILGDRQVVNIPGCPPISDVMVAVI 202


>UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Persephonella
           marina EX-H1 RepID=C0QP84_PERMH
          Length = 249

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 50/178 (28%), Gaps = 54/178 (30%)

Query: 43  VDCGGCNGCEIEIFATLS------------------PLFDAERFGIKVVPSPRHADILLF 84
                C+GC+I  F                         + ERF I              
Sbjct: 7   FKFASCDGCQISFFDISEMLSHLEEKVRIKYFIEGQDRNEFERFDISF-----------I 55

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI--------FHDLYCVW------- 129
            G+V+   +    +  +     +  ++ GAC +SGGI        + D+ C         
Sbjct: 56  EGSVSTPEQE--EKVKKIRDVSEYVVTIGACSSSGGIQSVRNFSDYKDIVCSVYPKPEMI 113

Query: 130 ------GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE 181
                       + VD  I GCP    A L      +  L +K +        E   +
Sbjct: 114 KSLERSRPVSDYIDVDFEIRGCPINKEALLEVIYSVI--LGKKPYNPEYPVCMECKRK 169


>UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Geobacter
           RepID=B5EBV9_GEOBB
          Length = 251

 Score = 50.4 bits (119), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 45/151 (29%)

Query: 47  GCNGCEIEIFATL------SPLFDAERF--------GIKVVPSPRHADILLFTGAVTRAM 92
            C+GC++ +          +  FD   F        G          D  +  GAV+   
Sbjct: 13  ACSGCQLTLLNCEDELAQVAARFDLVSFPMAESVEGGAPF-------DAAIVEGAVS--T 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGG-----------------IFHDLYCVWG----- 130
                  ++     ++ ++ G C   GG                 ++ D           
Sbjct: 64  PGDLANLFRLRNSSRLLVALGTCAIFGGVAAMNNGVSTREELVAAVYGDGEKTVESFAPA 123

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
                V VD  I GCPP     +      L 
Sbjct: 124 PLTNFVSVDFSITGCPPEKQEVMALLCALLN 154


>UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n=8 Tax=cellular
           organisms RepID=A4YF94_METS5
          Length = 322

 Score = 50.4 bits (119), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 37/156 (23%), Gaps = 39/156 (25%)

Query: 80  DILLFTGAV--------TRAM---RSPALRAWQSAPDPKICISYGACGNSGGI------- 121
           DILLF G++        T  M   +       + AP     ++ G C + GGI       
Sbjct: 67  DILLFEGSIVRGPAGKGTFNMFAGKPMMWWVREIAPQANYIVAVGDCASFGGIPAADPNP 126

Query: 122 ----------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
                               +    G        + + GCP  P   +    + L     
Sbjct: 127 TESTGLQFHRKEMSGFLGKDFRCKSGL-----PVINLSGCPVHPEWLITTLTLILRGEMN 181

Query: 166 KIHARGPGELDEQPAEILHGDMVQPLRVKVDREARR 201
           +             A        +          + 
Sbjct: 182 QEMLDEFNRPRIFYATTTQFGCPRQPYFTYKISTKE 217


>UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH RepID=B9L9V0_NAUPA
          Length = 306

 Score = 50.4 bits (119), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 34/148 (22%)

Query: 43  VDCGGCNGCEIEIFATLSPLFD-AERF-GIKVVPSPRHAD----------------ILLF 84
           +    C+GC +       P+ +   RF  I   P+   +D                IL+ 
Sbjct: 43  LQALSCDGCSVNFLNAEIPVTEILNRFANIVFHPTIMASDGKEAMDILMNYKSDNMILVV 102

Query: 85  TGAVTRAMRSPALR--------AWQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDK 134
            GA+  AM    +           + A + K  ++ G C    GI    ++Y   G    
Sbjct: 103 EGAIPTAMPHACMMGEMFVNDIILKKAKEAKAIVAAGTCATFAGICDMKNMYTKAGSVKY 162

Query: 135 IVPVD------VYIPGCPPTPAATLYGF 156
            +  +      V +P CP  P   LY  
Sbjct: 163 FLETNNINTPVVNLPTCPMKPKHLLYTL 190


>UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Tax=Bacteria
           RepID=B0TDW1_HELMI
          Length = 395

 Score = 50.4 bits (119), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 55/197 (27%), Gaps = 37/197 (18%)

Query: 29  SLLKKIKRSAYVYRVDCGGCNGCEIEIF--------ATLSPLFDAERFGIKVVPSPRHAD 80
             L+  +R   ++R +   C  C               +  +   +     +V +   A+
Sbjct: 68  EALETKRRMPVIWR-NFQECTCCTESFIRTQHPKASDIIMTMISLDYHETLMVAAGHQAE 126

Query: 81  --------------ILLFTGAVTRAM---------RSPALRAWQSAPDPKICISYGACGN 117
                         IL   GA+             R+      + A   K  I++G+C  
Sbjct: 127 EAVAKAIEDNRGNYILAVEGAIPVKDGGIYCCIAGRTAVDMLKEEAKHAKAIIAWGSCAV 186

Query: 118 SGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
           +G +        G      I+     + +PGCP      + G    +   E+       G
Sbjct: 187 NGCVQAANPNPTGAVPVQDIIKDKPIINVPGCPAIAE-VMAGVITHVLTFERLPELDSQG 245

Query: 174 ELDEQPAEILHGDMVQP 190
                    +H    + 
Sbjct: 246 RPKAFYGHRIHDKCNRR 262


>UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Eggerthella
           lenta DSM 2243 RepID=C8WGI4_EGGLE
          Length = 261

 Score = 50.1 bits (118), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 47/153 (30%), Gaps = 34/153 (22%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFG-IKVV--------PSPRHADILLFTGAV 88
             V  V    C GC+++I    + L D    G I +         P P   D+ +  GAV
Sbjct: 15  PRVVVVGLASCFGCQLQITNAEAHLLDV--LGQIDLRYWQLASSDPMPEDFDVAIIEGAV 72

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGI-------FHDLYCVW------------ 129
           T       +R+          I+ GAC  + GI       F +                 
Sbjct: 73  TTEESEATVRSL--REKAGAIIAVGACATTAGIPGMAAEGFLERPGQVYDRVPSACGDMV 130

Query: 130 --GGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                  ++ VD  +  CP      +     AL
Sbjct: 131 APRAVGAVIDVDFEVRACPIDSYDFIDVLQRAL 163


>UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1U6F3_9DELT
          Length = 328

 Score = 50.1 bits (118), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 16/126 (12%)

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFH--DLYCVWGGTDKIVP--VDVYIPGCPPTPAA 151
                +        I+YG C + GG+           G D++ P    + +PGCPP P +
Sbjct: 150 LENTTKVVEKALATITYGTCASYGGVQKAAPNPTACKGVDELFPGKPIINVPGCPPNPYS 209

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD--------REARRLA 203
            +      +     ++     G       E +H +  +     +D         EAR+  
Sbjct: 210 LVGTIVYYVTKGVPEL--DSVGRPVAFYGESVHDNCPRQEFFNMDQFAPSFGSEEARK-- 265

Query: 204 GYRYGR 209
           G+   +
Sbjct: 266 GWCLRK 271


>UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helicobacter bilis ATCC
           43879 RepID=C3XE47_9HELI
          Length = 593

 Score = 49.7 bits (117), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 32/152 (21%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK---------------VVPSPRHAD-- 80
             V  +    C GC   +  T +P F+   F I                 V +  HA+  
Sbjct: 65  LKVVWLHLQECTGCSESLLRTETPSFEVLLFDIFKIVYHDLVMVSSGHGAVAALEHANSH 124

Query: 81  ---ILLFTGAVTRAMRSPALRA-----WQSAP----DPKICISYGACGNSGGIFHDLYCV 128
              +LL  G++        +       +        + +   + G C + GGI       
Sbjct: 125 EKYVLLVEGSIPMGFAKDYITLGDRNGYDEISHLIHNAEAVFAIGTCSSFGGIQSAYPNP 184

Query: 129 WGG--TDKIVPVDV-YIPGCPPTPAATLYGFA 157
             G    +I   ++  +PGCPP+    +    
Sbjct: 185 TNGHALSEIFEREIINVPGCPPSDKNIVATLL 216


>UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylobacterales
           RepID=Q30QL6_SULDN
          Length = 293

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 16/102 (15%)

Query: 78  HADILLFTGAVTRAM----RSPALRAWQSAPDPKICISYGACGNSGGIFHDL-YCVWGGT 132
             ++L+  GA++                 +   +  ++ G C   GGIF +  Y    G 
Sbjct: 58  ECEVLIIEGAISEEFQRGGVPIFEIIKNYSKRVQKILTVGTCATFGGIFRESDYKDTAGM 117

Query: 133 D-----------KIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
                         +   + I GCP  P   +         +
Sbjct: 118 HFDQDRALHNFSDFLDKTISISGCPIHPEVLVNTLYAIKKSV 159


>UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfitobacterium
           hafniense RepID=Q24VQ2_DESHY
          Length = 319

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 31/162 (19%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK--------VVPSPR 77
           +  +    + +   ++ +   GC GC   + +++ P  +     +         +  S  
Sbjct: 49  IAEAAEANLSKKPVIW-MQGQGCTGCSESLLSSVDPGPEEIILDLLSVRYHPTLMAASGE 107

Query: 78  HA-----D-------ILLFTGAVTRAM--------RSPALRAWQSAPDPKICISYGACGN 117
            A     D       IL+  G++  A         +    +   +A   +  I+ G+C  
Sbjct: 108 QAVQSLEDCIAQGHYILVLEGSIPTADSRYCFVEGKPFIEQFKLAAEKAEAVIAVGSCAC 167

Query: 118 SGGIFHDLYCVWGGTDKIVPV--DVYIPGCPPTPAATLYGFA 157
            GGI    +    G  +++     V +P CP  P   +    
Sbjct: 168 YGGIPRAGFTGAAGAQEVLEGVKVVNLPSCPVKPDRLVGLLL 209


>UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Epsilonproteobacteria
           RepID=A6QAV6_SULNB
          Length = 298

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 21/100 (21%)

Query: 79  ADILLFTGAVTRAMRSPALRAWQS-------APDPKICISYGACGNSGGIFHDLYC---- 127
            D+L+  GA             +        A   K  IS G C   GGIF +       
Sbjct: 61  CDLLIVEGA--FKEEGFLKSGVEVSSVLKKYADKAKYIISAGTCATFGGIFKENDPEEIS 118

Query: 128 --VWGGTDKIVPVDVY------IPGCPPTPAATLYGFAMA 159
              + G +K    + Y      +PGCP  P    Y   M 
Sbjct: 119 GFCFDGEEKTPRYESYASKLISLPGCPIHPRWLSYLLLMI 158


>UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 Tax=Bacteria
           RepID=C5Q420_STAAU
          Length = 37

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 219 LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
           LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR
Sbjct: 1   LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 37


>UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=10
           Tax=Proteobacteria RepID=B5EQ53_ACIF5
          Length = 265

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 42/148 (28%), Gaps = 38/148 (25%)

Query: 45  CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA-----------DILLFTGAVTRAMR 93
              C+GC++          D  R   ++V     A           DI    G+V+    
Sbjct: 13  FSSCDGCQLAFLNLGE---DLLRL-AELVEIVHFAEAGPVDPDAVVDIAFVEGSVSTPED 68

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFH---------------------DLYCVWGGT 132
               R  +   + +  IS GAC  +GG+                                
Sbjct: 69  E--ERIQKIRKNSRHLISIGACATAGGLQALRNLADGPGWIAEIYAQPEHIHSLATSTPI 126

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMAL 160
              VPVD+ + GCP      L      L
Sbjct: 127 AAHVPVDLELWGCPVNGRQVLGAVRALL 154


>UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Denitrovibrio
           acetiphilus DSM 12809 RepID=C1SPM4_9BACT
          Length = 310

 Score = 47.7 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 16/98 (16%)

Query: 80  DILLFTGAVTRAMRSPALR----AWQSA----PDPKICISYGACGNSGGIFHDLYCVWGG 131
            IL+  G++   M+   +      + +           ++ G+C   GGI        G 
Sbjct: 103 HILVLEGSIPAEMKKACMLGEEPLYDALKKHLEKASAVVASGSCSCFGGIPASGANETGA 162

Query: 132 TD--------KIVPVDVYIPGCPPTPAATLYGFAMALG 161
            D         I    + IPGCP  P   +   A  LG
Sbjct: 163 IDIVQYMRETGISKPLIKIPGCPVHPDRLMGTVAYILG 200


>UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacteria
           RepID=MBHS_OLICO
          Length = 360

 Score = 47.7 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 13/126 (10%)

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDKIV--PVDVYIPGCPPT 148
           +    +   +A   K  IS+G+C + G +              +++     + +PGCPP 
Sbjct: 138 KPFVDQLRYAAKHAKAIISWGSCASHGCVQAARPNPTRATPVHQVITDKPIIKVPGCPPI 197

Query: 149 PAATLYGFAMAL--GLLEQKIHARGPG-----ELDEQPAEILHGDMVQPLRVKVDREARR 201
                      L  G L +      P       + ++     H D  Q +    D  ARR
Sbjct: 198 AEVMTGVITYMLTFGKLPELDRTGRPKMFYSQRIHDKCYRRPHFDAGQFVESFDDEGARR 257

Query: 202 LAGYRY 207
             GY  
Sbjct: 258 --GYCL 261


>UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=Endoriftia persephone
           'Hot96_1+Hot96_2' RepID=UPI0001698F29
          Length = 156

 Score = 47.0 bits (110), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 45  CGGCNGCEIEIFATLSPLFDA-ERFGIKVVP-----SP-RHADILLFTGAVTRAMRSPAL 97
              C+GC++ +      L +      I          P  H D+ L  G+++        
Sbjct: 15  FSSCDGCQLALLNLGEALLELPNYLEIVHFAEAGPSDPTAHVDLALVEGSIS--TPEDIE 72

Query: 98  RAWQSAPDPKICISYGACGNSGGI 121
           R  Q   +    IS GAC  +GGI
Sbjct: 73  RIRQVRKNSDYLISIGACATAGGI 96


>UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Archaeoglobaceae
           RepID=D2RD73_ARCPR
          Length = 352

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 19/115 (16%)

Query: 79  ADILLFTGAV------TRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH-------DL 125
           A IL+  GAV      T   +       ++A      I+ G C   GGI           
Sbjct: 110 AKILIVEGAVQDEGFCTIHGKDFREHLKEAAEVADYIIAVGQCATYGGIPGAKPWDGEPN 169

Query: 126 YCVWGGTDKIV------PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
                G    +         + IP CP  P   +   A  +  +  ++   G  +
Sbjct: 170 PTGAKGVQDFLYEVGINKTVINIPCCPAHPDHIIVTLASLMLGVVPELDKYGRPK 224


>UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteria RepID=MBHS_BRAJA
          Length = 363

 Score = 46.6 bits (109), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDKIV--PVDVYIPGCPPT 148
           +    +    A D    I++GAC + G +             DK++     + +PGCPP 
Sbjct: 139 KPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNKPIIKVPGCPPI 198

Query: 149 PAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQP 190
               + G    +    +       G      ++ +H    + 
Sbjct: 199 AE-VMTGVVTFITTFGKLPELDRQGRPKMFYSQRIHDKCYRR 239


>UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria RepID=C0QPV6_PERMH
          Length = 306

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 26/121 (21%)

Query: 80  DILLFTGAVTRAMRSPALRAW-------QSAPDPKICISYGACGNSGGIFHDLYCV---- 128
           D L+  GAVT   R   +  +       +        I+ G C   G  +  LY      
Sbjct: 63  DFLIIEGAVTSNKRFHRIGKYSIKYIINKLKSKADYIIAVGNCAVHGN-YPALYNPDQIT 121

Query: 129 -----WGGTDKIVP---------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
                  G   ++P           + I GCP  P             L+ K+ ++   +
Sbjct: 122 GIQFGLNGKKGLLPQKFRTKSGYPVINITGCPVHPEWITKTVLTLSYGLDLKLDSQNRPK 181

Query: 175 L 175
            
Sbjct: 182 E 182


>UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicobacter
           RepID=Q7VJP5_HELHP
          Length = 552

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 29/151 (19%)

Query: 81  ILLFTGAVTR-AMRSPAL----------RAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
           IL+  G V+                      + A   +   + G C + GG+        
Sbjct: 122 ILVIEGGVSLGNHAHFLTSGADSITGEEECKEVAQKAQAIFAVGTCSSFGGVQAAYPNPT 181

Query: 130 G--GTDKIVPVDV-YIPGCPPTPAATLYGFAMALGLLEQKI----------HARGPGELD 176
              G D  +   +  IPGCPP+ A  +      + L E             + +   ++ 
Sbjct: 182 QSIGIDSFLSQRIINIPGCPPSEANIIGSILYYILLQELPPTDSLHRPIWSYGKNLHDMC 241

Query: 177 EQPAEILHGDMVQPLRVKVDREARRLAGYRY 207
           E+ A+   GD VQ        +     GY  
Sbjct: 242 ERKAKFESGDFVQSFDDPHLED-----GYCL 267


>UniRef50_Q0FXV5 Putative uncharacterized protein n=1 Tax=Fulvimarina pelagi
           HTCC2506 RepID=Q0FXV5_9RHIZ
          Length = 391

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 55  IFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110
           +   L  LF+  RF      SPRHA I L  G +    R    R     P P++ +
Sbjct: 11  MRDRLERLFNDARF--VRAASPRHAAIFLIAGRMRLEDREDLRRLHDQMPHPRVTL 64


>UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteobacteria
           RepID=Q31DZ5_THICR
          Length = 813

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 15/92 (16%)

Query: 81  ILLFTGAVTRAMRSPALRAWQSAP-----------DPKICISYGACGNSGGIFHDLYCVW 129
           IL+  GAV   M    LR                      ++ G+C   GG+        
Sbjct: 606 ILIVEGAVPLGMGGNFLRIGPQGETGEALLKRVAQHASAVMAVGSCAFDGGVVAAAPNPT 665

Query: 130 G--GTDKIVPVD--VYIPGCPPTPAATLYGFA 157
           G  G  + +  D  + +PGCP  P   +    
Sbjct: 666 GAVGVSEALGRDDIINLPGCPVNPINVVGTLL 697


>UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfurivibrio
           alkaliphilus AHT2 RepID=C8R2V0_9DELT
          Length = 305

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 50/203 (24%), Gaps = 44/203 (21%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSP-----LFDAERFGIKV---VPSPRHA---------- 79
             +  +    C GC I +    SP     + D  +          S   A          
Sbjct: 40  PKLLYLQGLSCTGCSISLLQADSPSPLSMITDYSQLVFHTDLSATSGAQAMELINSFIDG 99

Query: 80  ---D-ILLFTGAVTRAMRSP-----------ALRAWQSAPDPKICISYGACGNSGGI--F 122
              D +L   GA+   M                RA ++       ++ G+C   GGI   
Sbjct: 100 QAGDYVLAIEGAIPAGMPEACIIDHKPFADYLERAARTMSGA---VAIGSCACDGGIPAA 156

Query: 123 HDLYCVWGGTDKIVP------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
                   G  +           + I GCP  P    +     + +    +    P    
Sbjct: 157 EGNPTGAVGLAEFYRNRNINQPVINIRGCPVHPDWVWHTITHLVLVGNPNLVNGSPRVFF 216

Query: 177 EQPAEILHGDMVQPLRVKVDREA 199
           E+    L              + 
Sbjct: 217 ERRLHELCPRYYDFQEEIFAEKL 239


>UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Magnetococcus sp. MC-1 RepID=A0L609_MAGSM
          Length = 282

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 33/173 (19%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAE-RFGI--KVVPSPRHAD------ILLFTG 86
           +   V      GC G ++ I    + L     R  I   ++ S + +D      + +  G
Sbjct: 10  KKLRVGIYSFTGCAGDQLAILNDTTVLLGLAQRAEICSFIMASSQESDQEGRLDLAIVEG 69

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGG-----------------IFHDL---- 125
           ++       AL   +   D    ++ G C   GG                 ++ D     
Sbjct: 70  SICSEQERTALEKLRQRSDA--LMALGTCAVWGGLPAMNAKTIPIHTMKEQVYGDSTVFP 127

Query: 126 -YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
                    + V VD  + GCP             L  +              
Sbjct: 128 GAREAEPLSRFVKVDYAVTGCPIEIDEFAQVVTAILNGVRPVQTDASVCSECR 180


>UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2KSS0_9ACTO
          Length = 423

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 14/126 (11%)

Query: 78  HADILLFTGAVTRAM---------RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
              IL+  G++             +S      +SA +  + ++ GAC   G +       
Sbjct: 142 QDHILVVNGSIPVKDGGIYCTIGGKSAQQVLEESAENASMILAVGACAVYGSVQAARPNP 201

Query: 129 WG--GTDKIVP--VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
            G  G D+I+     + + GCPP         A  L    +       G       + +H
Sbjct: 202 TGAVGVDEIIKDKPVINVAGCPPIGEVITATLAYILTK-GKAPELDAEGRPLFAYGQRIH 260

Query: 185 GDMVQP 190
               + 
Sbjct: 261 DSCPRR 266


>UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Spirosoma
           linguale DSM 74 RepID=D2QHS8_9SPHI
          Length = 326

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 44/173 (25%), Gaps = 60/173 (34%)

Query: 43  VDCGGCNGCEIEIFATLSP-LFDA-ERFGIKVVPSPR---------------------HA 79
           +  G C+G  +       P + D    FG+ ++  P                        
Sbjct: 7   LQGGACSGNTMSFLNAEEPTVVDLVTDFGVNILWHPSIGLEIGDQVTHLLNDIVSGRTQC 66

Query: 80  DILLFTGAV--------TRA---MRSPALRAWQSAPDPKICISYGACGNSGGI------- 121
           DIL++ G++        T      R         +      ++ G C   GGI       
Sbjct: 67  DILVYEGSIIQGPNGTGTMNYFADRPMQDWVRDLSKVVGYVVAIGDCATWGGIPAVAPNP 126

Query: 122 ---------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
                          F     V  G   ++     IPGCP  P          
Sbjct: 127 SESTGMQFLKKAKGGFLGSDYVSKGGLPVI----NIPGCPAHPDWITQILVAI 175


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.312    0.134    0.359 

Lambda     K      H
   0.267   0.0406    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,409,784,793
Number of Sequences: 3077464
Number of extensions: 60922701
Number of successful extensions: 159211
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 494
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 157968
Number of HSP's gapped (non-prelim): 752
length of query: 255
length of database: 1,040,396,356
effective HSP length: 126
effective length of query: 129
effective length of database: 652,635,892
effective search space: 84190030068
effective search space used: 84190030068
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 91 (39.7 bits)
