BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (255 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacter...   313   2e-84
UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bac...   263   4e-69
UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5        257   2e-67
UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobac...   252   1e-65
UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen l...   232   1e-59
UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   219   6e-56
UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   216   8e-55
UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen l...   215   1e-54
UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=B...   214   3e-54
UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   208   1e-52
UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase sma...   206   4e-52
UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   202   9e-51
UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=...   201   3e-50
UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=P...   200   4e-50
UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=c...   199   6e-50
UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 T...   199   6e-50
UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=c...   199   8e-50
UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=T...   198   1e-49
UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=B...   198   1e-49
UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   197   2e-49
UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   197   2e-49
UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=...   197   4e-49
UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   196   5e-49
UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Ta...   196   7e-49
UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax...   196   9e-49
UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID...   195   1e-48
UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-li...   195   1e-48
UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   195   1e-48
UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   194   3e-48
UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteob...   193   4e-48
UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyce...   193   4e-48
UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=...   193   5e-48
UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   193   6e-48
UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   192   7e-48
UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   192   1e-47
UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=F...   192   1e-47
UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=...   191   2e-47
UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   191   2e-47
UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   191   2e-47
UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   190   3e-47
UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemm...   189   7e-47
UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 ...   189   8e-47
UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=p...   189   9e-47
UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   188   1e-46
UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax...   188   1e-46
UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=...   188   1e-46
UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...   187   3e-46
UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydr...   187   3e-46
UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   187   4e-46
UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometr...   186   7e-46
UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=...   186   7e-46
UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=De...   186   7e-46
UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   186   9e-46
UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   185   1e-45
UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   185   1e-45
UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=c...   184   3e-45
UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=P...   184   3e-45
UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ...   184   3e-45
UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=c...   183   4e-45
UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collins...   183   5e-45
UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   183   5e-45
UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 T...   183   6e-45
UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax...   182   7e-45
UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd s...   182   8e-45
UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collins...   182   1e-44
UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   181   2e-44
UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=...   180   3e-44
UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=S...   179   6e-44
UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   179   6e-44
UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...   179   7e-44
UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea R...   179   8e-44
UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=c...   179   9e-44
UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria...   179   9e-44
UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=T...   179   1e-43
UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=...   177   2e-43
UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=...   177   3e-43
UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=N...   176   5e-43
UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cy...   176   5e-43
UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=D...   176   6e-43
UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=...   176   7e-43
UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   176   8e-43
UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...   175   1e-42
UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   175   1e-42
UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   175   2e-42
UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...   174   2e-42
UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   174   2e-42
UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   174   2e-42
UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=F...   174   2e-42
UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Ta...   174   3e-42
UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Pr...   174   3e-42
UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=...   174   3e-42
UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   172   7e-42
UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=...   171   2e-41
UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit ...   170   4e-41
UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteri...   170   5e-41
UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   169   1e-40
UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarch...   169   1e-40
UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfit...   169   1e-40
UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=F...   168   1e-40
UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea Rep...   167   3e-40
UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Ep...   167   4e-40
UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (Mbx...   165   1e-39
UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   163   4e-39
UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 ...   163   5e-39
UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japoni...   161   2e-38
UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=...   161   2e-38
UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q...   160   3e-38
UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ...   160   3e-38
UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   160   5e-38
UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=S...   159   6e-38
UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=T...   157   3e-37
UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   156   6e-37
UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   156   7e-37
UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   155   1e-36
UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospiri...   154   2e-36
UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   154   3e-36
UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=...   153   7e-36
UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meio...   152   8e-36
UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A...   152   1e-35
UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermopl...   151   2e-35
UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   150   5e-35
UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   150   5e-35
UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarch...   149   6e-35
UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   149   6e-35
UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulf...   149   1e-34
UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   147   4e-34
UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   147   4e-34
UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   145   1e-33
UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=I...   144   3e-33
UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   142   1e-32
UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN    140   3e-32
UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophi...   139   8e-32
UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shige...   137   4e-31
UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   136   6e-31
UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulib...   136   8e-31
UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit fa...   135   2e-30
UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Glucono...   129   8e-29
UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   126   6e-28
UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxi...   124   3e-27
UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax...   120   4e-26
UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax...   119   1e-25
UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanoca...   113   4e-24
UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetom...   112   9e-24
UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, puta...   109   9e-23
UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteria...   107   3e-22
UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=...   100   3e-20
UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n...   100   4e-20
UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax...    98   3e-19
UniRef50_C1GND6 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...    97   4e-19
UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota ...    96   2e-18
UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13...    95   2e-18
UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=G...    89   2e-16
UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subuni...    89   2e-16
UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    88   2e-16
UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    88   3e-16
UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 ...    87   4e-16
UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl v...    87   7e-16
UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria R...    86   8e-16
UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=...    85   2e-15
UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    85   3e-15
UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    84   7e-15
UniRef50_Q6A6I9 NADH dehydrogenase subunit n=2 Tax=Propionibacte...    82   2e-14
UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    79   1e-13
UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Ta...    79   1e-13
UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 ...    77   6e-13
UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subuni...    76   9e-13
UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    75   2e-12
UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit F...    74   6e-12
UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    73   8e-12
UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small sub...    73   9e-12
UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax...    73   1e-11
UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subuni...    72   2e-11
UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria ...    72   2e-11
UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    71   4e-11
UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomirag...    70   6e-11
UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    70   7e-11
UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermo...    70   7e-11
UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermoco...    70   8e-11
UniRef50_C7J5D7 Os07g0116900 protein n=3 Tax=Oryza sativa RepID=...    69   1e-10
UniRef50_A9B2V8 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    69   2e-10
UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silv...    67   4e-10
UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=...    66   1e-09
UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gam...    66   1e-09
UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subuni...    65   2e-09
UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    65   2e-09
UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    65   2e-09
UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Co...    65   2e-09
UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=...    64   5e-09
UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    64   5e-09
UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    63   1e-08
UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 T...    62   1e-08
UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    62   3e-08
UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    61   3e-08
UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI         61   3e-08
UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subuni...    60   8e-08
UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Ta...    59   2e-07
UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=...    59   2e-07
UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH    58   3e-07
UniRef50_Q85WY3 ORF82a n=1 Tax=Pinus koraiensis RepID=Q85WY3_PINKO     57   5e-07
UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehaloc...    57   5e-07
UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clost...    57   6e-07
UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    56   1e-06
UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    56   1e-06
UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=6...    56   1e-06
UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    56   1e-06
UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subuni...    55   2e-06
UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hy...    55   2e-06
UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=De...    55   2e-06
UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, sma...    54   4e-06
UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    54   6e-06
UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    54   7e-06
UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 ...    53   8e-06
UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (...    53   8e-06
UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n...    53   8e-06
UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    53   9e-06
UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subuni...    53   1e-05
UniRef50_A7IHL6 Ni Fe-hydrogenase III large subunit-like protein...    53   1e-05
UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    52   1e-05
UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl v...    52   1e-05
UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteoba...    52   2e-05
UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n...    52   2e-05
UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit fa...    52   2e-05
UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes Re...    52   2e-05
UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquifica...    51   3e-05
UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 T...    51   4e-05
UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    51   5e-05
UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    50   5e-05
UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    50   5e-05
UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH Re...    50   6e-05
UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Ta...    50   6e-05
UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    50   7e-05
UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...    50   7e-05
UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helic...    50   9e-05
UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylo...    49   1e-04
UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfit...    49   2e-04
UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Ep...    49   2e-04
UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit famil...    49   2e-04
UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 ...    48   2e-04
UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    48   3e-04
UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...    48   4e-04
UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacte...    48   4e-04
UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=...    47   6e-04
UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Ar...    47   7e-04
UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteri...    47   8e-04
UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria Re...    46   0.001
UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    46   0.001
UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicob...    46   0.001
UniRef50_Q0FXV5 Putative uncharacterized protein n=1 Tax=Fulvima...    46   0.001
UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteoba...    46   0.001
UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...    46   0.001
UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    46   0.001
UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2...    46   0.001
UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    46   0.002
UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clost...    45   0.002
UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteo...    45   0.002
UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminiba...    45   0.002
UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Pr...    44   0.004
UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ha...    44   0.006
UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Cl...    44   0.007
UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltapr...    44   0.007
UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine t...    43   0.008
UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Ba...    43   0.008
UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n...    43   0.009
UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax...    43   0.011
UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydr...    42   0.014
UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), s...    42   0.015
UniRef50_Q1AZS0 Ni Fe-hydrogenase III large subunit-like protein...    42   0.016
UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Pr...    42   0.019
UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fe...    42   0.019
UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Th...    42   0.021
UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    41   0.033
UniRef50_A9E0C1 Putative uncharacterized protein n=1 Tax=Oceanib...    41   0.050
UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Ac...    40   0.076
UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella...    40   0.093
UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase)...    40   0.096

>UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacteria RepID=HYCG_ECOLI
          Length = 255

 Score =  313 bits (803), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS
Sbjct: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG
Sbjct: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120

Query: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA
Sbjct: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180

Query: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240
           EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE
Sbjct: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240

Query: 241 IVSHLNHVVEEARIR 255
           IVSHLNHVVEEARIR
Sbjct: 241 IVSHLNHVVEEARIR 255


>UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bacteria
           RepID=C7MLM8_CRYCD
          Length = 283

 Score =  263 bits (672), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 146/239 (61%), Positives = 183/239 (76%), Gaps = 4/239 (1%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            P  +D+ IA  KA+LL  IKRS Y+YRVDCGGCNGCEIEIF TL+P+FDAERFGIK + 
Sbjct: 36  EPKVLDQKIAEAKAALLNDIKRSVYIYRVDCGGCNGCEIEIFGTLTPVFDAERFGIKNMA 95

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SPRHADIL++TGAVTRAMR PALRA+++APDPK+ +SYGACG +GGIFHD YCVWGGTDK
Sbjct: 96  SPRHADILVYTGAVTRAMRLPALRAYEAAPDPKLIVSYGACGCTGGIFHDNYCVWGGTDK 155

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK 194
           + PVDVYIPGCPP+PA T+YGFAMALGLL QK+H +   E + + A I+  D+   LR +
Sbjct: 156 LFPVDVYIPGCPPSPAQTIYGFAMALGLLGQKLHEKHLVEGEGEQAPIMFADIPYKLRCE 215

Query: 195 VDREARRLAGYRYGRQIADDYLTQL----GQGEEQVARWLEAENDPRLNEIVSHLNHVV 249
           ++REARR+AGY YGR + D ++  L    G+    V   +EAE+DPR  EI + L  ++
Sbjct: 216 LEREARRMAGYVYGRDLVDTFMQALEPEDGKVLTSVDALIEAESDPRKVEIYADLKQIL 274


>UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5
          Length = 274

 Score =  257 bits (657), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/247 (44%), Positives = 156/247 (63%), Gaps = 11/247 (4%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
           +P  +     + +    L K IKRS  VYR+DCG CNGCEIEIFA ++P++D ERFG K+
Sbjct: 6   VPQDIKTANDLTAKLEHL-KNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKL 64

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
           V +PRHADIL+ +G VTR M  P LRA+++APDPKI +++GACG+SGGIFHD Y VWGG 
Sbjct: 65  VANPRHADILICSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSSGGIFHDAYSVWGGI 124

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ-PL 191
           DKI+PVDVYIPGCPP PA+ +YG  MALG+++QK+H +   +    P  +    +     
Sbjct: 125 DKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQKLHKKSYEDDSTLPPPVEKSVIGDILF 184

Query: 192 RVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVAR---------WLEAENDPRLNEIV 242
              +  E++RL  Y +GR + D Y++ +    +              ++ E DPR  E +
Sbjct: 185 ERDLQAESKRLMSYIFGRALFDKYMSAIKTASDVHDPNSARTAMLEAIKKEEDPRYAECM 244

Query: 243 SHLNHVV 249
           + L++ V
Sbjct: 245 ALLHNDV 251


>UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobacteria
           RepID=C6ANV6_AGGAN
          Length = 258

 Score =  252 bits (643), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 156/251 (62%), Positives = 196/251 (78%), Gaps = 5/251 (1%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           N   P   NGI  P ++DE+IA MK +LLK I+RSAYVYRVDCGGCNGCEIEIF+T++P+
Sbjct: 2   NTQIPMPVNGISTPFSIDENIAKMKQALLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPV 61

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           FDAERFGIKVV SPRHADILLFTG+VTRAMR+PA+RA+Q+APDPKICI+YGACG  GGIF
Sbjct: 62  FDAERFGIKVVASPRHADILLFTGSVTRAMRTPAMRAYQAAPDPKICIAYGACGCGGGIF 121

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           HDLYCVWGG+D+IVPVDVYIPGCPPTPAAT+YGFAMALGLL+QK+  +         A++
Sbjct: 122 HDLYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLKGKQEKADPNAEAKL 181

Query: 183 LHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQV-----ARWLEAENDPR 237
               +   LR+ ++REARRLAGYR G  IA+ ++  + + ++         +LE E DPR
Sbjct: 182 RFPTIPLDLRISLEREARRLAGYRQGGNIANQFMAMMSEDDKVPFGVRLGEYLEREADPR 241

Query: 238 LNEIVSHLNHV 248
           L+EI++ L+ +
Sbjct: 242 LSEIINRLHAI 252


>UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=3
           Tax=cellular organisms RepID=B6YT72_THEON
          Length = 266

 Score =  232 bits (591), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 26/239 (10%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S +V+ VD G CNGC+IEI   L+P +DAER GIK+VPSPRHAD LL +G +TR     
Sbjct: 5   KSVWVFHVDSGSCNGCDIEILDVLTPYYDAERLGIKLVPSPRHADALLVSGPLTRQTYYA 64

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV-------------WGGTDKIV----- 136
              A+++  P P+I ++ G C +SGGIF++ Y +              GG + ++     
Sbjct: 65  VKAAYEAMPPKPRIVVAIGTCASSGGIFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGK 124

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD 196
             D+YIPGCPP+P   LYG A  LGL E+K+         E    +    + + + + + 
Sbjct: 125 KPDMYIPGCPPSPEEILYGLAQLLGLKEKKMKGEYYYAD-EIEFVLPERPIEERIYLTLR 183

Query: 197 REARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
              RR+ GY    ++ +D++  + + +E            RL+E+V       +++R++
Sbjct: 184 ESLRRVVGYFDREKVLEDFMALVEKAQESENP------RERLHELVIGYFLREKDSRVK 236


>UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=638 Tax=cellular organisms
           RepID=NDUS7_HUMAN
          Length = 213

 Score =  219 bits (558), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           +    P+     P P +  E + +    L+   +RS  ++ +  G    C +E+    +P
Sbjct: 42  TQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMHMAAP 99

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +D +RFG+    SPR +D+++  G +T  M     + +   P+P+  +S G+C N GG 
Sbjct: 100 RYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGY 159

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           +H  Y V  G D+IVPVD+YIPGCPPT  A LYG       ++++  
Sbjct: 160 YHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERR 206


>UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=57 Tax=cellular organisms
           RepID=NDUS7_MOUSE
          Length = 224

 Score =  216 bits (549), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 2/159 (1%)

Query: 16  PMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS 75
           P +  E + +    L+   +RS  ++ +  G    C +E+    +P +D +RFG+    S
Sbjct: 67  PRSRAEYVVTKLDDLINWARRS-SLWPMTFG-LACCAVEMMHMAAPRYDMDRFGVVFRAS 124

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G +T  M     + +   P+P+  +S G+C N GG +H  Y V  G D+I
Sbjct: 125 PRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRI 184

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           VPVD+Y+PGCPPT  A LYG       ++++   +    
Sbjct: 185 VPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYR 223


>UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=1
           Tax=Thermococcus onnurineus NA1 RepID=B6YTX0_THEON
          Length = 273

 Score =  215 bits (548), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 30/241 (12%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS +V+ ++ G CNGC+IEI   L+P +D ERFGIK+V SPRHA  LL +G +TR     
Sbjct: 8   RSIWVFHLNTGSCNGCDIEIIDVLTPFYDVERFGIKLVGSPRHAHALLVSGPLTRQAYYG 67

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV---------------WGGTDKIVP-- 137
           A    ++  P+P++ ++ G C  SGGIF++ Y V                GG  +++   
Sbjct: 68  AKETIKAMPPEPRVIVAIGTCTCSGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADL 127

Query: 138 --------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
                     +YIPGCPP P   +YG A  +GL+E+K+  +   + +  P ++  G + +
Sbjct: 128 RDEGEKVGPVIYIPGCPPRPEEIIYGIAQLVGLVEKKLSYQEYSD-ELVPFKLPEGPLEE 186

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVV 249
            +R+ +    R L GY    +I +D++  + + E+        E   RL +  +     V
Sbjct: 187 RIRLTLMERLRHLVGYLDREKILEDFMGLVKEAEKSENP---REELARLVKDYAAKCGDV 243

Query: 250 E 250
            
Sbjct: 244 R 244


>UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=Bacteria
           RepID=NUOB_RUBXD
          Length = 251

 Score =  214 bits (544), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 19/228 (8%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHAD 80
           +I +     L    R   ++ +  G    C IE+ +T     D ERFG      SPR AD
Sbjct: 11  NIITTSTDKLFNWARKNSLWPLQFG-LACCAIEMMSTGMAHNDLERFGAGFFAGSPRQAD 69

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +++ +G V+  M     R ++  P+PK  I+ GAC  SGG F D Y V  G D+++PVDV
Sbjct: 70  VMIVSGTVSTKMAERMTRLYEQMPEPKWVIAMGACAISGGPFLDGYSVLMGADRVIPVDV 129

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQK--IHARGPGELDEQPAEILHGDMVQPLRVKVDR- 197
           Y+PGCPP P A ++G       +E++  +    P          +   + +    ++   
Sbjct: 130 YVPGCPPRPEALIFGIMTLQKKIEREQQVGYEKPRPALVDEEGNIREYLPEREYRQISEG 189

Query: 198 EARRLAG-------YRYGRQIADDYLTQLGQGEEQVARWLEAENDPRL 238
           +A R  G       Y + R+        L  G      W+  E   RL
Sbjct: 190 KAHRPKGIKRLPRTYVFQRK-------GLPPGSMTDVGWIPPEARERL 230


>UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Eukaryota
           RepID=NDUS7_RECAM
          Length = 182

 Score =  208 bits (529), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 4/150 (2%)

Query: 21  ESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA 79
           E I S    L+   ++ S +       G   C +E+  + +  +D +RFGI   PSPR +
Sbjct: 30  EFIVSKMDELVNWARKGSLWPMTF---GLACCAVEMMHSAASRYDLDRFGIIFRPSPRQS 86

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+++  G +T  M     + +    +P+  +S G+C N GG +H  Y V  G D+IVPVD
Sbjct: 87  DVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 146

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
           +Y+PGCPPT  A LYG       +++    
Sbjct: 147 IYVPGCPPTAEALLYGLLQLQKKIKRSRKT 176


>UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase small subunit n=13
           Tax=cellular organisms RepID=B6YU96_THEON
          Length = 175

 Score =  206 bits (525), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 99/174 (56%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           ++  P D N      +  E +    A L + I RS +V+ V+ G CNGC+IEI A L+P 
Sbjct: 2   SIKVPADQNRTNGTTSEREMLEKRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPR 61

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +DAERFG+K+V SPRHAD+LL TG VT          ++  PDPKI I+ G+C   G +F
Sbjct: 62  YDAERFGVKLVGSPRHADVLLVTGPVTDQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVF 121

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
           ++          I+PVDVY+PGCPP P A LYG  +AL  L + +    P   +
Sbjct: 122 YESPFTNAPLSNIIPVDVYVPGCPPRPEAILYGVVLALEKLAKILKGEVPEGEE 175


>UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_HELMI
          Length = 175

 Score =  202 bits (514), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 2/152 (1%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VV 73
           V   + ++I       +    R   ++ +  G    C IE+ AT +  FD  RFG +   
Sbjct: 15  VDELIKKNIIMTSLEAVFNWARGNSLWPLSSG-LACCAIEMMATGASRFDMARFGYEVFR 73

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
           PSPR AD+++  G +T  M     R ++  P+PK  I+ G+C  +GG F D Y V  G D
Sbjct: 74  PSPRQADLIIIAGTLTWKMAPAIQRVYEQMPEPKWIIAMGSCACTGGPFADSYAVVPGVD 133

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           K++PVDVY+PGCPP P A L GF      ++ 
Sbjct: 134 KVIPVDVYVPGCPPRPEALLDGFLKLKAKIQN 165


>UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=NUOB1_THEYD
          Length = 199

 Score =  201 bits (510), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 2/154 (1%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP 76
           +    +        +    R + ++ +  G    C IE+ AT +  +D +RFGI +  +P
Sbjct: 20  IVPAANTIITTLDKIASWGRCSSLWPLTFG-LACCAIEMMATAASHYDLDRFGIIMRATP 78

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           R AD+++  G VT+ M    +  +   P+P+  I+ G+C  SGGIF + Y    G D+I+
Sbjct: 79  RQADVMIIAGTVTKKMAPVIVNLYHQMPEPRYVIAMGSCACSGGIF-NTYSTVQGVDEIL 137

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           PVDVYIPGCPP P A + G       ++ + H +
Sbjct: 138 PVDVYIPGCPPRPEALIEGLLKLQEKIKTEPHKK 171


>UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=Pirellula staleyi
           DSM 6068 RepID=D2R6Y4_9PLAN
          Length = 227

 Score =  200 bits (508), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 82/179 (45%), Gaps = 5/179 (2%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPS 75
             V+E++ +          R + ++ +  G    C IE+ A  +  +D +RFG      +
Sbjct: 28  ARVEENVFTTSVEQAINWARQSSIWPMTFG-LACCAIEMMAAGASRYDMDRFGAGAFRAT 86

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-FHDLYCVWGGTDK 134
           PR AD+++  G VT  M S   R +   PDPK  I+ GAC   GG  F   Y V  G D 
Sbjct: 87  PRQADLMIVAGTVTYKMASRVRRLYNMMPDPKFVIAMGACTVGGGPYFKWGYHVVKGVDL 146

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLE--QKIHARGPGELDEQPAEILHGDMVQPL 191
           +VPVDVYIPGCPP P A L G       ++  +    +  G       E +  ++  P 
Sbjct: 147 VVPVDVYIPGCPPRPEALLEGLMRIQDKIKGHRIAKKKSTGSGFLTVGEKVEDELPIPH 205


>UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=cellular organisms
           RepID=NUOB_GRABC
          Length = 194

 Score =  199 bits (507), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 1/147 (0%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH 78
            D+         L    R+  ++ +  G    C +E+     P +D +RFG+    SPR 
Sbjct: 42  ADKGFVVANLDKLVNWARTGSLWPMTFG-LACCAVEMIHAYMPRYDLDRFGVIPRASPRQ 100

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           +D+++  G +T  M     R +   P+P+  IS G+C N GG +H  Y V  G D+IVPV
Sbjct: 101 SDVMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 160

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQ 165
           DVY+PGCPPT  A +YG       + +
Sbjct: 161 DVYVPGCPPTAEALVYGIMQLQKKIRR 187


>UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 Tax=Thermococcus
           RepID=C5A2Q7_THEGJ
          Length = 283

 Score =  199 bits (507), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 34/244 (13%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS YV+ +D G CNGCEIE+F  L+P +DAER G+++  SPRHA  +  TG +TR     
Sbjct: 4   RSLYVFHLDTGACNGCEIELFDILTPYYDAERLGVRLAASPRHAHAMAATGPLTRQAYYA 63

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV---------------WGGT------- 132
           A  A ++  P P+I ++ G C  SGGIF++ Y +                GG        
Sbjct: 64  AKEAIKAMPPKPRIIVAIGTCACSGGIFYNGYPIYRRPESGREGQEYPRRGGIFELVQDL 123

Query: 133 ---DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
               + V   VYIPGCPP P   LYG A+ALGL+E+++        +E   E+    + +
Sbjct: 124 RDEGEYVGPVVYIPGCPPRPEEILYGVALALGLVEKQVKGEYYT--EEVGFELPEYPIEE 181

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQV------ARWLEAENDPRLNEIVS 243
            +R+ +    + + GY    ++ +D++  + + +           +     DPR++  + 
Sbjct: 182 RIRLSLRERLKYVVGYFDREKVLEDFMELVAKAKSAEELHGLIQGYCLKNPDPRVSLAMR 241

Query: 244 HLNH 247
            L  
Sbjct: 242 VLER 245


>UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=cellular organisms
           RepID=A3DKH2_STAMF
          Length = 165

 Score =  199 bits (506), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 68/138 (49%), Positives = 91/138 (65%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
             S  K I+ + ++   + G CNGC+IE+ A ++PL+D ERFGIK+ PS RHADIL+ TG
Sbjct: 20  GDSKYKIIRYTPWLIHFNTGACNGCDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTG 79

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
           AVT+       R ++  PDPK  ++ GAC  SGG+FH+ Y V  GTDK++PVD+Y+PGCP
Sbjct: 80  AVTKKAAERLKRLYEQMPDPKFVVAVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCP 139

Query: 147 PTPAATLYGFAMALGLLE 164
           P P A L G    L  LE
Sbjct: 140 PRPEAILDGIVKLLKRLE 157


>UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=Thermoproteaceae
           RepID=A8MBS9_CALMQ
          Length = 374

 Score =  198 bits (504), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 18/237 (7%)

Query: 5   LGPRDANGIPVP-MTVDESIASMKASLLKK-IKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           +G    N + +   ++   I  +  SL     K S +   +       C +E     +P 
Sbjct: 1   MGDTTVNTLKITLKSIGMDIKLLPDSLASWGTKFSIWPAHLVT---ACCGVEFAHASAPG 57

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +DAER+G   +  PR  + ++  G VTR M      A++  P PK  I+ G+C   GG+F
Sbjct: 58  YDAERWGFLPIFGPRQTNSIVIEGTVTRKMARIVKTAYEQMPYPKFVIAMGSCAMEGGVF 117

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK-----IHARGPGELDE 177
            + Y V    ++IVPVD ++ GCPPTP A +    M    +E K     I          
Sbjct: 118 WNSYHVVR-VNEIVPVDAWVMGCPPTPEAVIRAIRMVQSKIEGKEVKPNIRPNPVDLSKV 176

Query: 178 QPAEILHGDMVQPLRVKVDR-------EARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
              +        P R++ +        +      +  G+++ D +   L  G +  A
Sbjct: 177 LKPDKPQRPPNPPHRIEFELIKDINVCKPAANVKWELGQKLIDGFKESLKDGVKNTA 233


>UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=Bacteroidales
           RepID=NUOB_BACV8
          Length = 198

 Score =  198 bits (503), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 74/152 (48%), Gaps = 2/152 (1%)

Query: 29  SLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHADILLFTGA 87
             L    RS  ++ +     + C IE  A  +  +D  RFG +V   SPR AD+++  G 
Sbjct: 42  DDLINWGRSNSLWPLTF-ATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIMVAGT 100

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 147
           +T  M     R +    DPK  I+ G C  SGG F   Y V  G DKI+PVDVYIPGCPP
Sbjct: 101 ITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIPGCPP 160

Query: 148 TPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
            P A LYG       ++ +    G    + +P
Sbjct: 161 RPEALLYGMIQLQRKVKLEKFFGGVNRKENEP 192


>UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IG01_9CLOT
          Length = 266

 Score =  197 bits (502), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 90/165 (54%), Gaps = 9/165 (5%)

Query: 8   RDANGIPVPMTVDESI---------ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAT 58
           RD         +DE I           +   + KK  RS  +  VD G CNGC+ EI A 
Sbjct: 102 RDLLRATPLYVIDEEINGTDYELIGKKLNEKVAKKFGRSLNIREVDAGSCNGCDYEIQAL 161

Query: 59  LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
             P  D ERFGI  V SPRHAD+LL TG V+R M    ++ + + P PK+ ++ GAC  S
Sbjct: 162 NGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVVAAGACACS 221

Query: 119 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
           GG+F D Y    G D I+PVDVYIPGCPP P A +YG    +G L
Sbjct: 222 GGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILKGIGRL 266


>UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A1ASR2_PELPD
          Length = 179

 Score =  197 bits (502), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 96/153 (62%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             RS +VY  + GGCNGC+IE+   L+P +D ERFGIK+V SPRHAD++L  G   R+  
Sbjct: 10  FGRSLWVYHANSGGCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQGPAMRSTG 69

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               RA+ + P PK+  + G+C   GGI+HD Y V G  +K++PV+ Y+PGCPP P A +
Sbjct: 70  KALQRAYAAMPGPKLVFAIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPGCPPRPEAII 129

Query: 154 YGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
           +G A+A GL+++K       ++ + P    H +
Sbjct: 130 WGVAVAAGLVDKKTAPVEFKQVSDFPMPRYHPE 162


>UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=Bacteria
           RepID=NUOB2_CHLT3
          Length = 195

 Score =  197 bits (500), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 7/182 (3%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           + +   ++L   + S  ++ +  G    C IE+ AT +  +D ERFGI    SPR +D++
Sbjct: 14  VITAAENVLNWARLS-SLWPMGFG-LACCAIEMMATNASNYDLERFGIFPRSSPRQSDLM 71

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD-LYCVWGGTDKIVPVDVY 141
           +  G VT  M    +R ++  P+P+  +S G+C N GG + +  Y V  G D+I+PVDVY
Sbjct: 72  IVAGTVTFKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVVKGVDRIIPVDVY 131

Query: 142 IPGCPPTPAATLYGFAMALGLL-EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
           +PGCPP P A + G      L+ E+K        ++    + +  +    + V+    A+
Sbjct: 132 VPGCPPRPEALIGGLMKVQELIREEKFAGDRREAIERLKPKKVKAE---DVIVETSASAK 188

Query: 201 RL 202
           +L
Sbjct: 189 KL 190


>UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_CLOB8
          Length = 169

 Score =  196 bits (499), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 5/159 (3%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPR 77
           ++++I   K        R+   + +  G    C IE+ A     +D  RFG +    SPR
Sbjct: 15  IEKNIILTKLDDTLNYFRAHSFWPLTFG-LACCAIEMMAAGGARYDIARFGYEVFRASPR 73

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+++  G +T  M     + +   P+PK  I+ G+C  SGG F D Y V  G D  +P
Sbjct: 74  QADLMIVAGTITEKMAPIVKKIYDQMPEPKWVIAMGSCATSGGPFVDSYNVVPGADTFLP 133

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
           VDVYIPGCPP P A ++G       +   IH +  G  +
Sbjct: 134 VDVYIPGCPPRPEALIHGLLTLKEKI---IHPKEVGRSE 169


>UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Tax=cellular
           organisms RepID=NDHK_THEEB
          Length = 237

 Score =  196 bits (497), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 5/175 (2%)

Query: 1   MSNLLGPRDANGIPVPM---TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFA 57
           M+N   P   N I  P     + E+I     + +    R + ++ +  G    C IE  A
Sbjct: 1   MTNTTSPAILNPIARPEVPQELAENIILTSLNDVYDWARLSSLWPLMYG-TACCFIEFAA 59

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            +   FD +RFG+    SPR AD+++ +G +T  M    +R ++  P PK  I+ GAC  
Sbjct: 60  MIGSRFDFDRFGLVPRNSPRQADLIITSGTITMKMAPALVRLYEQMPSPKYVIAMGACTI 119

Query: 118 SGGIF-HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           +GG+F  D Y    G DK++PVDVY+PGCPP P A +         +  +     
Sbjct: 120 TGGMFSSDSYSAVRGVDKLIPVDVYLPGCPPRPEAIMDAIVKLRKKIANEHINER 174


>UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax=Bacteria
           RepID=NUOB1_ROSS1
          Length = 268

 Score =  196 bits (497), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRA 91
              R + ++ +  G    C IE+ AT    FD  RFG +    SPR AD+++  G VT+ 
Sbjct: 26  NWGRRSSIWPLSFG-LACCAIEMMATGLARFDLARFGAEMFRASPRQADLMIVAGTVTKK 84

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M    +R +   P+P+  IS GAC  SGG F D Y V  G D ++PVDVYIPGCPP P A
Sbjct: 85  MAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEA 144

Query: 152 TLYGFAMALGLLEQKIHA--RGPGELDEQPAEIL 183
            L+        ++ +     R  G+ + +   + 
Sbjct: 145 LLHALMTLQKQIDAQRLNQVRWYGKREAKEYPVP 178


>UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID=B6IT61_RHOCS
          Length = 196

 Score =  195 bits (496), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/186 (39%), Positives = 97/186 (52%), Gaps = 2/186 (1%)

Query: 4   LLGPRDANG-IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           L GPR   G  P   TV+     +  +  +++ RS  + +VD G CN CE+EI A  +P+
Sbjct: 10  LKGPRTIAGPAPADATVEALARRLDTASRRRLGRSLAIRQVDAGSCNACEMEIHALNNPV 69

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +D ERFG   V SPRHAD+LL TG VT  MR   L+ W++ PDPK  ++ G C   GG F
Sbjct: 70  YDLERFGFSFVASPRHADVLLVTGPVTTNMREALLKTWEATPDPKWVVALGQCAIDGGPF 129

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI-HARGPGELDEQPAE 181
            D Y V GG +K+VPVD+ IPGCPP P   L      +    +        G     P E
Sbjct: 130 ADSYAVVGGVEKVVPVDLMIPGCPPRPVDILAALVALIEAEARPPSRPAASGTPAGAPRE 189

Query: 182 ILHGDM 187
                +
Sbjct: 190 RREPTL 195


>UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-like) n=1
           Tax=uncultured methanogenic archaeon RC-I
           RepID=Q0W2C0_UNCMA
          Length = 247

 Score =  195 bits (496), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/145 (46%), Positives = 93/145 (64%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             ++  + K   RS  +  VD G CNGCE+E+ +  + ++D ERFG+ +V SPRHAD LL
Sbjct: 103 RELEKKIKKAFGRSLAIREVDAGSCNGCEVEVNSLSNAIYDIERFGLHIVASPRHADALL 162

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG VTR M    ++++ + PDPK+ I+ GAC  +GGIF D Y V+ G D +VPVDVYIP
Sbjct: 163 VTGPVTRNMERGLMQSYNATPDPKMVIAMGACAITGGIFRDSYAVYNGVDALVPVDVYIP 222

Query: 144 GCPPTPAATLYGFAMALGLLEQKIH 168
           GCPP P A + G  +A+   E+K  
Sbjct: 223 GCPPRPQAIIQGIMLAIDRWEEKRK 247


>UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_HYDS0
          Length = 177

 Score =  195 bits (496), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           I +    LL    R   ++ V   G   C IE+    +  FD +R G+    SPR AD+L
Sbjct: 11  ITTTVDELLSW-GRRNALWPV-TIGLACCAIEMMHAAASRFDIDRLGMIFRASPRQADVL 68

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           +  G V   +       W   P+PK CIS G C ++GG F   Y    G D+I+PVDVYI
Sbjct: 69  IVAGTVVNKVAPMLKLVWDQMPEPKWCISMGGCASAGGPFP-TYSTLQGIDRIIPVDVYI 127

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           PGCPPTP   +YG       + +K   R     +E   ++
Sbjct: 128 PGCPPTPQGLIYGLLELQRKIREKKVTRYEKAFEEFKKDL 167


>UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=14 Tax=Bacteria
           RepID=B1ZSE5_OPITP
          Length = 279

 Score =  194 bits (492), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 97/158 (61%), Gaps = 4/158 (2%)

Query: 13  IPVPMTVDESIASMKASLLKK----IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
            P      E   ++   L  +    + RS ++  VD G CNGCE+EI A   P++D ERF
Sbjct: 122 APQISETGEKTEALGRELQNRIHSLLGRSLHIREVDAGSCNGCEVEINALSGPIYDLERF 181

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           GI +V SPRHAD+LL TG VTR M     + + + P+P++ ++ GACG SGG+F   Y  
Sbjct: 182 GIHLVASPRHADMLLVTGPVTRNMELALRKTYDATPEPRLVVAVGACGCSGGMFGRNYAT 241

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
            G  D ++PVDVYIPGCPP P A L+G  +A+G LE++
Sbjct: 242 CGSVDSVLPVDVYIPGCPPNPFALLHGILLAVGRLEKR 279


>UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteobacteria
           RepID=B9L8U0_NAUPA
          Length = 164

 Score =  193 bits (491), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/142 (42%), Positives = 86/142 (60%)

Query: 30  LLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVT 89
             K  K+S ++   + GGCNGC+IEI A L+P +D ERFG+    +P+ +DILL TG VT
Sbjct: 4   FTKFRKKSPWILHYNTGGCNGCDIEILAALAPKYDIERFGMLNRGNPKQSDILLVTGPVT 63

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
           +  R    R +   P+PK+ ++ GAC + GGIF D Y V  G D I+PVDV+IPGC P  
Sbjct: 64  KRCRDVLRRLYLEMPEPKVVVAMGACAHGGGIFRDFYHVENGVDNIIPVDVWIPGCAPRV 123

Query: 150 AATLYGFAMALGLLEQKIHARG 171
            A + G   A+ + E+K   + 
Sbjct: 124 EAVIDGMVEAVKIWEKKTKEKE 145


>UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyces limnophilus DSM
           3776 RepID=C1ZCK3_PLALI
          Length = 225

 Score =  193 bits (491), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 82/186 (44%), Gaps = 4/186 (2%)

Query: 7   PRDANGIP-VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA 65
           P  + G P +    +E++            + + V+ +  G    C +E+ AT    +D 
Sbjct: 19  PLPSAGSPWIEGRFEENLIVTTLEQAMNWGQLSSVWPLTFG-IACCAMEMMATGMSKYDL 77

Query: 66  ERFGI-KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-FH 123
           +RFG      +PR AD+++  G VT  M S   R +   PDPK  I+ GAC   GG  F 
Sbjct: 78  DRFGSGAFRATPRQADLMIVAGTVTYKMASRIRRLYDQMPDPKYVIAMGACTIGGGPYFK 137

Query: 124 DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEIL 183
             Y V  G D +VPVDVYIPGCPP P A L G       +  +   R        P    
Sbjct: 138 YGYHVVKGVDLVVPVDVYIPGCPPRPEALLEGVMRIQDKIRARKLGRNTVSQLPVPHRSG 197

Query: 184 HGDMVQ 189
           +G +  
Sbjct: 198 YGKLAP 203


>UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=Bacteria
           RepID=NUOB2_ACIBL
          Length = 202

 Score =  193 bits (490), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRH 78
           +++        +    R + V+ +  G    C IE+    +  +D  RFG +   PSPR 
Sbjct: 9   EKNFLLSSVDYVFNWARKSSVWPMTFG-LACCAIEMITASTARYDIARFGSEVFRPSPRQ 67

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           +D+++  G VT  M     R ++  P+PK  ++ GAC + GG F + Y    G DKIVPV
Sbjct: 68  SDLMIVAGTVTLKMAPVVQRIYEQMPEPKWVMAMGACASVGGPF-NTYATLQGVDKIVPV 126

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD 196
           DVY+ GCPP P    YG       ++    A+ P ++       L   M+   R  V 
Sbjct: 127 DVYVVGCPPRPENLFYGLLKLQDKIDHMTLAKRPTDVR------LDETMLDEFRKSVR 178


>UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Ajellomyces
           dermatitidis RepID=C5GDP9_AJEDR
          Length = 245

 Score =  193 bits (490), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKA-----SLLKKIKRSAYVYRVDCGGCNGCEIEIF 56
           S L   R      +  + DE   +M         +    R A ++ +  G    C +E+ 
Sbjct: 67  STLGVARMERSSSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLG-LACCGLEMM 125

Query: 57  ATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACG 116
           A   P +D +R G     SPR +D+L+  G VT  M       +   PDPK  IS G+C 
Sbjct: 126 AVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCA 185

Query: 117 NSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           N GG +H  Y V  G D+++PVDVY+PGCPPT  A +Y  ++    L  K      
Sbjct: 186 NGGGYYHYSYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKLIVKSRTTRI 241


>UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteroidales
           RepID=NUOB_AZOPC
          Length = 191

 Score =  192 bits (489), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRH 78
             +IA  K + L    RS  V+ +     + C IE     +  +D  RFG +V   SPR 
Sbjct: 23  GANIAIAKLNDLINWGRSNSVWPLTF-ATSCCGIEFMCLGAARYDFARFGWEVTRNSPRQ 81

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           AD++   G +   M     R +    +PK  I+ G+C  SGG F   Y    G DKI+PV
Sbjct: 82  ADVVFCCGTIVHKMAPVLKRLYDQMSEPKYVIALGSCAISGGPFKSSYHTIMGIDKIIPV 141

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLE 164
           DVYIPGCPP P A +YG       ++
Sbjct: 142 DVYIPGCPPRPDAMIYGMIQLARKIK 167


>UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=9 Tax=Bacteria
           RepID=B2IID4_BEII9
          Length = 177

 Score =  192 bits (488), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF 63
           L  P      P    +    A +      ++ RS  +  VD G CNGCE+EI A  +  +
Sbjct: 9   LAKPPLTEAGPTDGEIAALAAELDHLARSRLGRSLAIREVDAGSCNGCELEINALGNAFY 68

Query: 64  DAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH 123
           D ERFG++ V SPRHAD+LL TG VT  MR   LR + + P+PK  ++ G C    G+F 
Sbjct: 69  DLERFGLRFVASPRHADVLLVTGPVTHNMREALLRTYDATPNPKWVVAAGTCALGEGVFA 128

Query: 124 DLYCV-WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
           + Y    GG   ++ VD+YIPGCPPTP   L G    +  
Sbjct: 129 ESYACQKGGVSAVIAVDLYIPGCPPTPTDLLKGLLALITK 168


>UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=Fibrobacter
           succinogenes subsp. succinogenes S85 RepID=C9RJJ6_FIBSS
          Length = 211

 Score =  192 bits (487), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 14/203 (6%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHAD 80
           +I +     L    RS  ++    G    C IE  +T    +D  R G +    +PR +D
Sbjct: 9   NIITSSLDFLVNWGRSNSLWPFPYG-TACCAIEFMSTEVGRYDLSRIGSEYVRFTPRQSD 67

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +LL  G +T        R ++   +P+  I+ GAC +SGG F+D YC   G D I+PVDV
Sbjct: 68  VLLVAGTITYKQAPILKRIYEQMAEPRWVIAMGACASSGG-FYDCYCTVPGIDHIIPVDV 126

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
           YI GCPP P A           ++ +          +Q AE +   +   +      EA+
Sbjct: 127 YIGGCPPRPEAFFDAMFDLQKKVKDE-------SFMKQRAESVKEQLE--MIKVKTAEAK 177

Query: 201 RLAGYRYGRQIAD--DYLTQLGQ 221
           R A      ++ D  D++ +  +
Sbjct: 178 REAAACAREKVVDIKDFMKEKQE 200


>UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=Myxococcales
           RepID=NUOB2_SORC5
          Length = 182

 Score =  191 bits (485), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 78/174 (44%), Gaps = 4/174 (2%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKK---IKRSAYVYRVDCGGCNGCEIEIFATL 59
           NL+ P               I +     +       RS  V+ +  G    C IE+  T 
Sbjct: 6   NLMAPPRGWEAKYESDGGGVITTSVDQTVNWLLNWGRSNSVWYMLFG-LACCAIELMQTG 64

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
            P  D ERFG    PSPR +D+ +  G +T  M +   R +    +P+  IS G+C N G
Sbjct: 65  GPRGDLERFGAAPRPSPRSSDLFIIAGTLTYKMATRVKRLYDQMSEPRFVISMGSCSNCG 124

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
           G+F   Y V  G D+I+PVDVY+PGCPP P A L G       ++ +      G
Sbjct: 125 GLFQYAYSVCKGVDQIIPVDVYVPGCPPRPEALLEGLLKIQEKIKSERALGRRG 178


>UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NUN9_HALUD
          Length = 183

 Score =  191 bits (485), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 86/156 (55%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           M   +     RS ++  ++CG CNGC+IE    L P +D ERFGI+   +PRHAD+L+ T
Sbjct: 1   MGRIIDWARNRSPWILHMNCGSCNGCDIETLDALMPRYDVERFGIQQKDTPRHADVLVAT 60

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G VT+ M     R ++  P+PK+ I+ G+C  +GG+F D Y    G D ++PVD+Y+PGC
Sbjct: 61  GPVTKQMAPRLERIYEQMPEPKLVIAAGSCAATGGVFQDCYNCHEGIDDVIPVDMYVPGC 120

Query: 146 PPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE 181
           P +P   + G    L    Q+  A        +  +
Sbjct: 121 PISPETLIDGIVALLEEAGQEAKAERLAAAKPEIVQ 156


>UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774
           RepID=B8J1E3_DESDA
          Length = 185

 Score =  191 bits (484), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 7/160 (4%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S ++   DCG CNGC+IE+ A L+P++D ERFG+    +P+HAD+LL TG V    R  
Sbjct: 14  KSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVNAGNPKHADVLLVTGTVNHRNRHV 73

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
             + ++  P PK  IS GAC  SGG+F D Y V  G   ++PVDV++PGCPP P A + G
Sbjct: 74  LKQIYEQMPSPKAVISLGACNLSGGVFKDTYNVLNGAHNVIPVDVFVPGCPPKPEAIIDG 133

Query: 156 FAMALGLLEQKI-------HARGPGELDEQPAEILHGDMV 188
              ALG+L+ K+           PG+ D  PA     +  
Sbjct: 134 VVEALGVLKAKMGMGPVPQATFMPGDEDGTPAGARDEEAP 173


>UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A9KS72_CLOPH
          Length = 144

 Score =  190 bits (483), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/141 (43%), Positives = 87/141 (61%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +K +K+S ++   D   CNGC+IE+ A L+PL+D ERFGI    +P+HADILL TG+V  
Sbjct: 1   MKFVKKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADILLITGSVNE 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
                  + ++   +PKI ++ G C NSGGIF + Y V GG DK++PVDVY+PGC   P 
Sbjct: 61  QNIPVVKQIYEQMAEPKIVVAVGICANSGGIFAECYNVSGGVDKVLPVDVYVPGCAARPE 120

Query: 151 ATLYGFAMALGLLEQKIHARG 171
           A + G    L +LE+K     
Sbjct: 121 AIIDGVVKGLAILEEKQKYAR 141


>UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A8Z3_GEMAT
          Length = 212

 Score =  189 bits (481), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 3/175 (1%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADIL 82
            + +   L    R+  ++ +  G    C IE  AT +  FD  RFG++ +  SPR AD+L
Sbjct: 27  ITTRLDFLVNWGRAGSLWPMPFG-TACCAIEFMATAASRFDLSRFGMERLSYSPRQADVL 85

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           L  G V   +     R +Q  P PK  IS GAC ++GG+F D Y V  G D I+PVDVY+
Sbjct: 86  LCAGRVPLKLAPVLRRIYQQMPQPKWVISMGACASTGGMF-DNYAVVQGIDTIIPVDVYV 144

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           PGCPP P A ++   M    + Q+        ++  P       +      ++  
Sbjct: 145 PGCPPRPEALMHAIIMLQKKVMQERLKDSTRHVEIDPDPTSQLYIPPSRIDELSE 199


>UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 Tax=cellular
           organisms RepID=NDHK2_CYAP4
          Length = 259

 Score =  189 bits (480), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 85/185 (45%), Gaps = 6/185 (3%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
             +   VP  + E+I       +    R + +Y +  G    C IE  A ++  FD ERF
Sbjct: 12  PISSAEVPPELSENIILTSLDDIYNWARISSIYPLMYG-TACCFIEFAAMIASRFDMERF 70

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-HDLYC 127
           G+    SPR AD+++  G +T  M  P  R +   P+PK  I+ GAC  +GG+F  D   
Sbjct: 71  GMFPRASPRQADLIILAGTLTMQMAVPTRRLYDQMPEPKYVIAMGACMITGGMFSADSPT 130

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM 187
              G DK++P+DVYIPGCPP P A L         L +KI    P E            +
Sbjct: 131 ALRGADKLLPIDVYIPGCPPRPEAILDAVT----KLRKKIANESPQERQNLQQTHRFYSI 186

Query: 188 VQPLR 192
              +R
Sbjct: 187 AHQMR 191


>UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=pseudomallei group
           RepID=A5TDF9_BURMA
          Length = 293

 Score =  189 bits (480), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 2/159 (1%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
           P+ +  D  I +   + +    +   ++ +  G    C +E+       +D +RFG+   
Sbjct: 131 PLTLEKDGFIVTTLDAAM-AAAQKNSLWYMTFG-LACCAVEMMHAAGARYDMDRFGMIPR 188

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR  D+++  G +T  M     R +    +P+  +S G+C N GG +H  Y V  G D
Sbjct: 189 ASPRQCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCD 248

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           +IVPVDVY+PGCPPT  A +YG       + ++     P
Sbjct: 249 RIVPVDVYVPGCPPTAEALVYGLMQLQRKVAERSTHSRP 287


>UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=54 Tax=cellular
           organisms RepID=B2A054_OPITP
          Length = 338

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/142 (40%), Positives = 85/142 (59%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +  +++S ++   D   CNGC+IE  A L+PL+D ER G+    +P+HADI L TGAV  
Sbjct: 1   MLGLRKSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVINTGNPKHADIFLVTGAVNE 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
             +      +   P+PK+ ++ G C +SGGIF D Y + GG D+++PVDVY+PGC   P 
Sbjct: 61  QSKEVIRNIYHQLPEPKVVVAIGVCASSGGIFRDCYNIAGGVDRVIPVDVYVPGCAARPE 120

Query: 151 ATLYGFAMALGLLEQKIHARGP 172
           A + G   ALG+LE+K      
Sbjct: 121 AIIDGVVQALGVLERKQSEMSA 142


>UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax=Bacteria
           RepID=NUOB2_STRGG
          Length = 235

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 4/169 (2%)

Query: 7   PRDANGIPVPMTVD--ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           P D   +P P  +     +A     ++    R   ++  + G    C IE  A      D
Sbjct: 19  PADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFNFG-LACCAIEFIAASMARHD 77

Query: 65  AERFG-IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH 123
             R G I   P PR AD+++ +G VT  M     R ++  P+PK  IS+GAC N GG + 
Sbjct: 78  FIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNCGGPYW 137

Query: 124 DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           D Y V  G D+I+PVDVY+PGCPP P A L G       + ++  A   
Sbjct: 138 DSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARESLAERY 186


>UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=Desulfotomaculum
           acetoxidans DSM 771 RepID=C8W241_DESAS
          Length = 236

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 97/159 (61%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           +G  +   +  P + ++   +++  + K   RS ++  VD G CNGC+ EI +  +P++D
Sbjct: 78  IGETEVPVLTAPASAEDLGRALREKIKKICHRSLHIRYVDAGACNGCDFEINSMTNPVYD 137

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD 124
            +++G+  V SPRHAD+LL TG VTR +     + +++ P P + ++ GAC   GG+F +
Sbjct: 138 IQQYGVDFVASPRHADMLLVTGVVTRNLEIALHKTYEACPRPALVVAVGACACGGGVFKE 197

Query: 125 LYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            Y   GG DK +PVDVY+PGCPPTPA  + G   A+G L
Sbjct: 198 AYASGGGVDKFLPVDVYVPGCPPTPAQIIKGILTAIGRL 236


>UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_ACIBL
          Length = 213

 Score =  187 bits (475), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 12  GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK 71
                   +E I            R   ++ +  G    C IE+ +  +  FD  RFG +
Sbjct: 45  RATFGEQPEEGIVLTTLDNAVNWIRKNSIWPMTFG-LACCAIEMMSMGASRFDIARFGAE 103

Query: 72  -VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
              PSPR +D+++  G V++ M       +   P+PK  IS GAC  SGG+F + Y +  
Sbjct: 104 VFRPSPRQSDLMIIAGRVSQKMAPVIRHLYLQMPEPKWVISMGACATSGGVF-NNYALVQ 162

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
           G ++ +PVD+Y+PGCPP P   +Y   +    ++ + 
Sbjct: 163 GVNQYIPVDIYVPGCPPRPEQLIYAITLLQEKIQAER 199


>UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydrogenasei, chain b)
           (Ndh-1, chain b) n=1 Tax=Persephonella marina EX-H1
           RepID=C0QR84_PERMH
          Length = 181

 Score =  187 bits (474), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 4/173 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           + +++  L    + S +   V   G   C IE+  T +  FD +R GI    SPR +D+L
Sbjct: 11  LTTVEEVLSWGRRNSLWPASV---GLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSDVL 67

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           +  G V   +       +   PDPK  I+ G C ++GG F   Y    G D+I+PVDVY+
Sbjct: 68  IVAGTVVNKVAPMLKLIYDQMPDPKWVIAMGGCSSAGGPFP-TYATLQGVDRIIPVDVYV 126

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
           PGCPPTP A L+G       ++ K   +   E+  +        +    +  +
Sbjct: 127 PGCPPTPQALLWGILELQKKIKAKKEGKVWEEIPVREVPTASQPIPIKEKSPL 179


>UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=A6UVJ5_META3
          Length = 246

 Score =  187 bits (474), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/141 (46%), Positives = 84/141 (59%)

Query: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
           T+ E   S   S+ K   +S Y+  V  GGCN C+ +I    +P++D  RFGIK V SPR
Sbjct: 103 TLKEPDTSSLKSIKKLFGKSVYLREVCAGGCNACDADINVLNTPVYDLSRFGIKFVASPR 162

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
           HAD L+ TG VT+ M    ++ + + P PK  I+ G C  SGGIF +   V GG DKI+P
Sbjct: 163 HADGLVITGPVTKNMELALMKTYDATPSPKFVIAVGTCAISGGIFRENEEVVGGVDKILP 222

Query: 138 VDVYIPGCPPTPAATLYGFAM 158
           VD+YIPGCPP P   LY F  
Sbjct: 223 VDLYIPGCPPHPFTNLYAFVK 243


>UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometricum borinquense
           DSM 11551 RepID=C1VB41_9EURY
          Length = 236

 Score =  186 bits (472), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 5/179 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADI 81
           I +   + +  ++ S  ++ +  G    C IE+  T S   D +RF       SPR AD+
Sbjct: 48  ILTKFDNFMNWVRGS-SMFMLQFG-IACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADV 105

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G +         R +   P+PK  +  G+C  SGG F + Y V  G ++++PVD++
Sbjct: 106 IIVPGTIVSKFAPRMKRVYDQMPEPKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIH 165

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP--AEILHGDMVQPLRVKVDRE 198
           +PGCPP P A +YG A     + +   +    +  E     ++   +++  L  ++D E
Sbjct: 166 VPGCPPRPEALIYGVAKLQQRIAEGESSPVTVKPYELEQFGDLEQDELIDHLADQIDEE 224


>UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=Actinomycetales
           RepID=NUOB1_SALAI
          Length = 188

 Score =  186 bits (472), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 7/156 (4%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
           VP  + E I  +         R   ++  + G    C IE  AT     D  R G+    
Sbjct: 3   VPAVLGEPIRFVL-----NWGRRYSLWVFNFG-LACCAIEFIATSMSRHDFMRLGVIPFA 56

Query: 75  S-PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
             PR AD+++ +G VT  M     R +   P+PK  IS+GAC N GG + D Y V  G D
Sbjct: 57  HGPRQADLMVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVD 116

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
           +++PVDVY+PGCPP P A L+G       +  +   
Sbjct: 117 QLIPVDVYVPGCPPRPEALLHGILRLQEKIAAEGAG 152


>UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=Dehalococcoides
           RepID=NUOB_DEHSC
          Length = 200

 Score =  186 bits (472), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPS 75
                 I S++  L      S +       G   C IE+    +  +D  RFG+     S
Sbjct: 48  PPPGVFITSVEKVLNWSRHYSLWPVMF---GLACCAIEMMCMAASRWDLARFGMDIFRAS 104

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G +T  M     R +   P+PK  ++ GACG SGG+F D Y V  G + +
Sbjct: 105 PRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMGACGTSGGLFRDSYSVVPGFNLV 164

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           VPVDVY+PGCPP P A +         +++
Sbjct: 165 VPVDVYVPGCPPRPEALMRAIMDIHEKIDK 194


>UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           carboxidivorans P7 RepID=C6PUG1_9CLOT
          Length = 242

 Score =  186 bits (471), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 86/143 (60%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +K  +  K KRS  +  VD G CNGC +E+  T +  +D  R+GIK   SPRHAD ++
Sbjct: 100 QEVKEKIYSKFKRSLVLRSVDTGSCNGCMMEVSNTQNTYYDLSRYGIKFAASPRHADGIV 159

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG VT  M+   ++ + +  DPKI I+ G+C  SGGIF D Y V    ++I+ V++ IP
Sbjct: 160 VTGPVTLNMKEALIKTYDAISDPKIVIAVGSCAYSGGIFKDGYSVCEDLNEILKVNLVIP 219

Query: 144 GCPPTPAATLYGFAMALGLLEQK 166
           GCPP+P A LYG    +  L+++
Sbjct: 220 GCPPSPQAILYGMLKIINKLDEE 242


>UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Geobacter
           metallireducens GS-15 RepID=Q39SF9_GEOMG
          Length = 244

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 79/152 (51%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
           +  P +       +   L +   RS     V  GGCN CE +     +  +D  RFGI+ 
Sbjct: 92  LVHPGSEHHHARPLPPDLRRLFGRSLKFREVSAGGCNACEADTNVLSTIGWDLGRFGIQF 151

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
           V SPRHAD L  TG VT  M    L  +++ PDPKI ++ GAC  +GG + D   V  G 
Sbjct: 152 VASPRHADGLWVTGPVTEHMAKALLTTYEAIPDPKIVVACGACAINGGPYIDTPQVCNGV 211

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           D IVPVD+YIPGCPP PA  L G    L  ++
Sbjct: 212 DSIVPVDLYIPGCPPHPATILDGLLRILNKIK 243


>UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Thermofilum
           pendens Hrk 5 RepID=A1RWL1_THEPD
          Length = 245

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
           K      +KRS Y+ RVD G CNGC+IE+F  L+P FD ER G+K+V SPR AD++L TG
Sbjct: 6   KQKAYDALKRSVYLLRVDSGSCNGCDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTG 65

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
            VTR         +++AP P + ++ GAC   GGI++D Y   GG DK++PVDVYIPGCP
Sbjct: 66  PVTRQFLPVLKATYEAAPKPCVVVACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCP 125

Query: 147 PTPAATLYGFAMALGLLEQKIHARGPGELDE-QPAEILHGDMVQ---PLRVKVDREARRL 202
           P P A L+G A+AL +LEQK+         E     +   +       L   +  E  + 
Sbjct: 126 PRPHAILHGVAVALDILEQKVKRSETKADAESFKPALPSLEGAINSWELYRALKLELYKH 185

Query: 203 AGYRYGRQIADDYLTQLG--QGEEQVARWLEAENDPRLNEI 241
            GYR G ++  D L      +  +  A   E     + ++ 
Sbjct: 186 LGYRIGYRVLCDLLRISKGSKDLDDFAAKAEKAVSEKYHDA 226


>UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=cellular organisms
           RepID=NUOB_DEIGD
          Length = 178

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHA 79
           E +       L    RS  ++    G    C IE+ ++     D  RFG +    SPR A
Sbjct: 17  EGVLFSTLEKLVAWGRSNSLWPATFG-LACCAIEMMSSTDGRNDLSRFGSEVFRASPRQA 75

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+++  G +++ M     R +   PDPK  IS GAC +SGG+F + Y V    D +VPVD
Sbjct: 76  DVMIVAGRLSKKMAPIMRRVYDQMPDPKWVISMGACASSGGMF-NNYAVVQNVDHVVPVD 134

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           V++PGCPP P A +Y        +  + +     +L    A
Sbjct: 135 VFVPGCPPRPEALIYAVMQLQKKVRGEAYDARGEQLPMVEA 175


>UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=Planctomycetaceae
           RepID=D2R5G9_9PLAN
          Length = 192

 Score =  184 bits (466), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 8/174 (4%)

Query: 19  VDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSP 76
            +  + +    L    ++ S +           C IE+ AT +   D  RFG +    SP
Sbjct: 6   PENVMVTKLDELANWCRKNSLWPMPFAT---ACCGIELMATGASRHDLARFGAEVFRFSP 62

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           R  D+++  G V   M     R WQ   +PK CIS GAC ++GG+F D Y V  G D+ +
Sbjct: 63  RQCDLMIVAGRVVMKMLPVLQRIWQQMHEPKWCISMGACASTGGVF-DTYAVVQGIDRFI 121

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQK--IHARGPGELDEQPAEILHGDMV 188
           PVD+Y+PGCPP P             ++++  I          Q  +    ++ 
Sbjct: 122 PVDMYVPGCPPRPEQLTQAIIDLQDKIQREGTITGEEFETAARQERKRALQELP 175


>UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular
           organisms RepID=NUBCD_PELCD
          Length = 794

 Score =  184 bits (466), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPS 75
            ++ ++I            R   ++ +  G  + C +E+  +++P FD  RFG + +  +
Sbjct: 3   ESIPKNIILTTLDDAINWGRKNSMWPMFFG-LSCCFVEMMGSMTPRFDLARFGAEVLRGT 61

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G   + M +  LR ++   +PK  I+ G+C NSGG++ D+Y V  G +++
Sbjct: 62  PREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCANSGGMY-DVYSVMQGVNQV 120

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           +PVDVYIPGCPP P A + G       + +K     P
Sbjct: 121 LPVDVYIPGCPPRPEAFMQGLMTLQEKIARKESPARP 157


>UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=cellular organisms
           RepID=C9RKY2_FIBSS
          Length = 419

 Score =  183 bits (465), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 16/206 (7%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           L P+  + IP    V  +I       +    R+  ++ +  G  + C IE+ ++    +D
Sbjct: 6   LAPKILDPIPGGKYVVNAI-----DYVVNWARANSIWPLTYG-TSCCAIEMMSSSMARYD 59

Query: 65  AERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF- 122
             RFG +    SPR AD+ +  G +TR M       W+  P PK  I+ GAC  SGG F 
Sbjct: 60  IARFGSEVFRSSPRQADLFILAGTITRRMAPAIQMLWEQIPGPKYVIAMGACTISGGPFI 119

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI--------HARGPGE 174
           +D Y V  G   ++PVDV++PGCPP P A  +G       + ++           +    
Sbjct: 120 YDNYSVVRGAQNLIPVDVFVPGCPPRPEALFHGLLTLREKILKETCRNPWHEGEPKDVST 179

Query: 175 LDEQPAEILHGDMVQPLRVKVDREAR 200
           +D           ++ ++ +   EAR
Sbjct: 180 MDRYREAAKTWAALEEMKDEQMAEAR 205


>UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
           ATCC 25986 RepID=A4EBM2_9ACTN
          Length = 195

 Score =  183 bits (465), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 60/144 (41%), Positives = 81/144 (56%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
           K+ RS +V   D   CNGC+IE+ A+L+PLFDAERFG+    +P+HADI L TG+V    
Sbjct: 4   KMSRSPWVIHYDGSSCNGCDIEVLASLTPLFDAERFGVVNTGNPKHADIFLVTGSVNAQN 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAAT 152
                + +    +PK  ++ G C  SGG+F D Y V GG D+ +PVDVY PGC   P   
Sbjct: 64  LPVVRQIYNQMLEPKCVVACGICACSGGVFRDAYNVIGGVDRAIPVDVYAPGCAIRPETV 123

Query: 153 LYGFAMALGLLEQKIHARGPGELD 176
           +     A G+L+QK      G   
Sbjct: 124 IDAIVEACGILDQKEAVMRAGGDP 147


>UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=cellular
           organisms RepID=A7I7C9_METB6
          Length = 172

 Score =  183 bits (464), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 1/168 (0%)

Query: 1   MSNLLGPRDANGIPVPMTVDESI-ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATL 59
           +S +LG +    +PV     E I   ++  +  +  RS  +  +D G  N  EIEI    
Sbjct: 5   VSCMLGKKVTGPLPVRDEELERIGREIRREINARFGRSLAIRELDAGSDNAAEIEINNLS 64

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
           +  +D ERFGI  V SPRHAD+LL TGA+T  M   A + + + P PK  ++ G     G
Sbjct: 65  NAYYDVERFGISFVASPRHADVLLVTGAITCNMAIAAQKTYDAMPSPKFVVAVGDDACDG 124

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
           GI+   Y V GG D I PVD+ IPG PP P   L G    +    ++ 
Sbjct: 125 GIYKGTYAVLGGADAIFPVDLKIPGNPPAPIQILTGLLALMRSAGKRT 172


>UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 Tax=Halobacteriaceae
           RepID=B0R3U2_HALS3
          Length = 235

 Score =  183 bits (464), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 5/180 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADI 81
           I +     +  ++ S  ++ +  G    C IE+  T S   D +RF       SPR AD+
Sbjct: 47  ILTKFDKFMNWVRGS-SMFMLQFG-IACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADV 104

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G +         R +   P+PK  ++ G C  SGG F + Y V  G ++++PVD++
Sbjct: 105 MIVPGTIVSKFAPRMKRVYDQMPEPKFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIH 164

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA--EILHGDMVQPLRVKVDREA 199
           IPGCPP P A +YG A     +     +    +  E     ++   ++V  L   +D E+
Sbjct: 165 IPGCPPRPEALVYGVAKLQERIANGESSPVTVKPYELEEFGDLERDEIVDKLAADIDEES 224


>UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax=Bacteria
           RepID=NUOB2_OPITP
          Length = 191

 Score =  182 bits (463), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           M +L+     +   +P  V +     K   L  + R+  ++ +  G    C IE+ A   
Sbjct: 14  MPSLVAATGPSTPEIPPEVSQIARFAKLDDLLALGRANSLWPLTFG-LACCAIEMMAAGM 72

Query: 61  PLFDAERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
             FD  RFG +   PSPR AD+++  G V + M       +    +PK  I+ G C  SG
Sbjct: 73  ARFDISRFGAEVFRPSPRQADVMIVAGTVNKKMAPAVKLLYDQMLEPKWVIAMGQCAISG 132

Query: 120 GIFH--DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           G F     Y V  G D++ PVDVY+PGCPP P A + G       +  K  
Sbjct: 133 GPFKYPGQYAVVEGVDQLFPVDVYVPGCPPRPEALIEGILKLEEKITGKRR 183


>UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd subunit n=1
           Tax=uncultured marine microorganism HF4000_APKG10H11
           RepID=B3TC56_9ZZZZ
          Length = 182

 Score =  182 bits (463), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 59/177 (33%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKI-----KRSAYVYRVDCGGCNGCEIEI 55
           M N+L P     I   +    ++A  K  L+KK+     K S +V  +  G    C  E 
Sbjct: 5   MKNIL-PDGTKTIVQDIVDGVNVAIKKVPLVKKLITWGRKNSLWVVHLTTG---CCSPEF 60

Query: 56  FATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGAC 115
            A     +D ERFG  V+ + R  DIL+  G V   M     R +   PDPK  I+ G C
Sbjct: 61  AALAGAGYDMERFGPLVMAAMRQCDILIIEGQVADKMAEVVKRTYDQMPDPKYVIAVGNC 120

Query: 116 GNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
             SGG + D Y +  G DKI+PVDVY+PGCPP P   +    +    ++++   R  
Sbjct: 121 AISGGFYWDSYSMVMGIDKIIPVDVYVPGCPPRPEDWIDAIRLVQTRMDKEGLDRER 177


>UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GAA3_9ACTN
          Length = 228

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 3/156 (1%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            +S ++   D   CNGC+IE+  ++ PL+D ERFGI    +P+HADI L TG+V      
Sbjct: 5   SKSPWLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINTGNPKHADIFLVTGSVNAQNIE 64

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
                +    +PK+ ++ G C  +GG+F D Y V GG DK +PVDVY PGC   P   + 
Sbjct: 65  VVRHIYDQMLEPKVVVACGICACTGGVFRDCYNVIGGVDKAIPVDVYAPGCAVRPETIID 124

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQP 190
               A+ +L++K      G+    PA      ++  
Sbjct: 125 AVLKAVEILDEKAKLMAAGKD---PATAPRKGLLPR 157


>UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=7 Tax=Trypanosomatidae RepID=NDUS7_TRYBB
          Length = 202

 Score =  181 bits (459), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 12  GIPVPMTVDESIASMKASLLKK-IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI 70
           G   P    +        L +  +  S +       G   C +E+    +  +D +RFGI
Sbjct: 41  GTSKPNNALQYAQMTLHDLTEWCLAYSPWPLTF---GLACCAVEMMHAYASRYDLDRFGI 97

Query: 71  KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
              P+PR A+I++ +G VT  M       +    +PK  IS G+C N GG +H  Y V  
Sbjct: 98  VPRPTPRQAEIIIVSGTVTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLR 157

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           G ++ +PVD +IPGCPP+  + ++        + 
Sbjct: 158 GCERAIPVDFWIPGCPPSAESLVFCLHTLQKKIR 191


>UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=Thermoprotei
           RepID=A2BJ94_HYPBU
          Length = 209

 Score =  180 bits (457), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 25  SMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
            +K+ L   I  S +   +     + C  E  A   P +D+ER G      PR+ ++LL 
Sbjct: 32  PIKSLLDWGISFSLWPVHLTT---SCCGAEFAAVYDPKYDSERLGSLPFTHPRNTNVLLV 88

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            G +TR M   A   W+  P PK  I+ GAC  +GGIF++ Y +    ++I+PVD Y+PG
Sbjct: 89  EGTLTRKMARAARLVWEQMPWPKFVIAMGACAITGGIFYNSYNIVR-VNQILPVDYYVPG 147

Query: 145 CPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAG 204
           CPPTP A           + +          + +P +I     ++ L      +ARR   
Sbjct: 148 CPPTPEAVANALIKLQEKVRK---------GEWKPRDIEDKKFLEELMAPHYEKARRHLE 198

Query: 205 YRYGRQIADD 214
                Q  + 
Sbjct: 199 LLARTQRTER 208


>UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=Sphingobacteriales
           RepID=C7PSH0_CHIPD
          Length = 187

 Score =  179 bits (455), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 3/160 (1%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRH 78
            E   +     +  + R   ++ +     + C IE  AT++  +D  RFG + +  +PR 
Sbjct: 22  GEGFFATTFDQVIGLARKNSIWPLPF-ATSCCGIEFMATMASTYDMSRFGSERMAFTPRQ 80

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
            D+L+  G +++ M     + +    +P+  ++ GAC +SGG+F D Y V  G D+++PV
Sbjct: 81  CDLLMVMGTISKKMAPVLRQVYLQMAEPRWVVAVGACASSGGVF-DTYSVLQGIDQVIPV 139

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           DVY+PGCPP P A + GF     L+ Q+   R   +  ++
Sbjct: 140 DVYVPGCPPRPEAIIDGFMRVQDLVGQESLRRRHSDKYKE 179


>UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Proteobacteria RepID=Q12F15_POLSJ
          Length = 181

 Score =  179 bits (455), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/162 (38%), Positives = 86/162 (53%), Gaps = 3/162 (1%)

Query: 14  PVPMTVDES---IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI 70
           P P   D     I  +   +L  + ++  +  VD G CNGCE+EI A  +P ++ E  GI
Sbjct: 17  PAPGIDDAQRTAIERIHRDILLILGQALTIRAVDAGSCNGCELEIHALNNPYYNIEGLGI 76

Query: 71  KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
           K V SPRHAD+LL TG V+R M     R + + P+PK+ ++ G CG +GGIF D Y   G
Sbjct: 77  KFVASPRHADMLLVTGPVSRHMDEALRRTYDATPEPKLVVAVGDCGCTGGIFGDSYASCG 136

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
               ++PVDV +PGCPP P   L G   A+           P
Sbjct: 137 RVANVIPVDVTVPGCPPPPIEILRGILTAVRQRRPGTAGDNP 178


>UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGC1_9EURY
          Length = 172

 Score =  179 bits (454), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 2/143 (1%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHADIL 82
           A    + +    RS  ++ +  G  + C IE+    +   DA+R G+     SPR +D++
Sbjct: 20  AEKFINTVLNWGRSNSLWPLTFG-TSCCAIEMMTFGATKVDADRLGVLFNGDSPRQSDLI 78

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           L +G +T+ M    L  ++  PDPK  I+ GAC  SGG++HD Y    G D+I+PVD +I
Sbjct: 79  LVSGTITKKMARRLLNVYEQIPDPKYVIAVGACNVSGGLYHDSYNTIEGIDRIMPVDAFI 138

Query: 143 PGCPPTPAATLYGFAMALGLLEQ 165
           PGCPP P   L    +   L+++
Sbjct: 139 PGCPPRPEEFLDAVRVLQKLIKE 161


>UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea RepID=A0B811_METTP
          Length = 190

 Score =  179 bits (454), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 28/189 (14%)

Query: 10  ANGIPVPMTVDESIASMK--------------------------ASLLKKIKRSAYVYRV 43
           ++ IPVP+ +DE I                               ++L   ++++  + +
Sbjct: 4   SDVIPVPVAIDEEIEKWTIWGRPVMDVWFTTTEKIHQIIQMGPIKNVLNWGRKNSLWFLM 63

Query: 44  DCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSA 103
              GC  C +E+     P +D +RFGI    +PR AD+++ +G +TR         W+  
Sbjct: 64  QPMGC--CGVEMLVFGCPHYDCDRFGIIPRATPRQADVMIISGYITRKYLPAIKNLWEQM 121

Query: 104 PDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            +PK CI+ G C  SGG F+D Y +   T    P+DVY+PGCPP P   + GF      +
Sbjct: 122 LEPKWCIAVGECAISGGPFYDSYNIIQNTSDFFPIDVYVPGCPPRPEQFIKGFVELQEKI 181

Query: 164 EQKIHARGP 172
           +Q+   RG 
Sbjct: 182 KQRKDKRGY 190


>UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=cellular organisms
           RepID=NUOB_LEPBA
          Length = 186

 Score =  179 bits (454), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 5/168 (2%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHAD 80
            +A++   +      S + Y         C IE  +T    +D  RFG +    SPR AD
Sbjct: 19  QVATLDNVVQWGQSFSLWPYPFAT---ACCGIEYMSTACADYDIARFGAERPSFSPRQAD 75

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           ++L  G +T  M     + +    +PK  IS GAC +SGG+FH  Y V  G D+I+PVDV
Sbjct: 76  MILVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDV 134

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMV 188
           Y+PGCPP P A L         ++ +       E+  +  EI   +  
Sbjct: 135 YVPGCPPRPEAILDALVKLQKKVQSQGLEARRQEVMRKIEEINERNKP 182


>UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria RepID=A3THJ2_9MICO
          Length = 198

 Score =  179 bits (453), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRAMRS 94
           R A ++    G    C IE+ A  +P +D  RFG++    +PR AD+++  G V+  M  
Sbjct: 24  RKASIWPATFG-LACCAIEMMAVGTPDYDIARFGMERFSATPRQADLMIVAGRVSNKMAP 82

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
              + +   P+PK  IS G C +SGG+F + Y +  G D I+PVD+Y+PGCPP P   L 
Sbjct: 83  VVRQVYDQMPNPKWVISMGVCASSGGMF-NNYAIVQGVDHIIPVDIYLPGCPPRPEMLLN 141

Query: 155 GFAMALGLLEQKIHA 169
                   ++     
Sbjct: 142 AIIELHDQIQNSKLG 156


>UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=Thermoprotei
           RepID=A1RZ48_THEPD
          Length = 171

 Score =  179 bits (453), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 4/167 (2%)

Query: 1   MSNLLGPRDANGI--PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAT 58
           MS  LG      +           +       L+    +  ++ V     + C  E  AT
Sbjct: 1   MSCPLGFVMVGRLEESARKAAQWLVEKTPIRSLRDWAITFSLWPVHF-TTSCCGAEFAAT 59

Query: 59  LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
            +P FDAERFG     SPR  ++++  G +T+ M   A   +   P PK  I+ GAC   
Sbjct: 60  SAPRFDAERFGFLPFNSPRQTNLMVIEGTLTKKMGEAAKIVYDQMPWPKFVIAMGACAID 119

Query: 119 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           GG+F++ Y +    D I+PV+ +IPGCPP P A      M    + +
Sbjct: 120 GGLFYNSYNIVRPKD-ILPVEYFIPGCPPRPEAVAQAIIMLQEKVRK 165


>UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=Bacteria
           RepID=NUOB1_OPITP
          Length = 171

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 3/159 (1%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK- 71
           +     ++  I   KA  +    R+  ++ +  G    C IE+    +  FD  RFG + 
Sbjct: 8   LTYSSAIEGGIVVSKADAVINWIRTNSMWPMPMG-LACCAIELMQVGNGRFDIARFGAEV 66

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
           +  SPR +D ++  G+VT  M     R +     PK  I+ GAC +SGG++   Y    G
Sbjct: 67  MRFSPRQSDCMIVAGSVTYKMAPQIRRIYDQMMSPKWVIAMGACASSGGMYR-SYAHMQG 125

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
            D+I+PVDVYI GCPP P   L         +  +   +
Sbjct: 126 VDRILPVDVYISGCPPRPEGILDALMKLQAKIRTERAGQ 164


>UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=Bacteria
           RepID=NUOB_BLOPB
          Length = 236

 Score =  177 bits (448), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 3/138 (2%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRA 91
              R   ++  + G  + C +E+    + + D  RFG + +  SPR AD ++  G     
Sbjct: 52  NWGRGNSLWPYNFG-LSCCYVEMTTAFTAIHDVARFGSEVLRASPRQADFMVIAGTPFLK 110

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M     R +    +PK  IS GAC NSGG++ D+Y V  G DK +PVD+YIPGCPP P A
Sbjct: 111 MVPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDLYIPGCPPRPEA 169

Query: 152 TLYGFAMALGLLEQKIHA 169
            + G  +    + ++   
Sbjct: 170 YIQGLLLLKKSINEERRP 187


>UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=Nitrosopumilus
           maritimus SCM1 RepID=A9A345_NITMS
          Length = 174

 Score =  176 bits (447), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 6/153 (3%)

Query: 21  ESIASMKASLLKKIKR--SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPR 77
           E              R  S +   ++      C +E  A  SP +D ERFGI     S R
Sbjct: 23  EKAIDKPLGYAINWGRIWSLWPVHIET---ACCSVEFGAASSPRYDVERFGIIEAFGSLR 79

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
             D+++  G +TR M       +   P+PK  I+ GAC  +GG++ D Y V  G D ++P
Sbjct: 80  QCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVIP 139

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           VDVY+PGCPP P   + G  +    +++    +
Sbjct: 140 VDVYVPGCPPRPETLIQGCILLQEKIKRMKARK 172


>UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cystobacterineae
           RepID=NUOB_MYXXD
          Length = 187

 Score =  176 bits (447), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-V 73
              ++    + +   L    K S + Y         C +E  +  +   D  RFG +   
Sbjct: 14  RDESMGWLQSIVSKGLGWARKYSLFTYPYAT---ACCGMEYMSVAASRHDISRFGAEFPR 70

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR AD+L+  G +         R ++   +PK  +++G C +SGG F+D Y V  G D
Sbjct: 71  FSPRQADLLMVVGTINLKQAPILKRVYEQMAEPKWVVAFGVCASSGG-FYDNYAVLQGID 129

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
           +I+PVDVYIPGCPP P   L G  +    +  ++H R     +  P    H
Sbjct: 130 RIIPVDVYIPGCPPRPEQVLDGLMLLQDKIGNQVH-RIAEREEANPTAARH 179


>UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Desulfurococcus
           kamchatkensis 1221n RepID=B8D5A0_DESK1
          Length = 337

 Score =  176 bits (447), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 80/198 (40%), Gaps = 7/198 (3%)

Query: 31  LKKIKRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVT 89
                RS ++       C+ C  +E    +    D ER+G    PSPR +D+ +  G +T
Sbjct: 7   RWAYARSLWMIHY----CSACGAVEFPPLVMAPLDWERYGYMPTPSPRQSDLYIGMGYLT 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
           +      L  ++  P+PK+ ++   C ++GG + D Y  +   D  + V+ ++PGC P P
Sbjct: 63  KKTVKLVLNMYRQMPEPKLVLAGCNCTSTGGPYWDSYATYKRLDDFIEVEGWVPGCMPMP 122

Query: 150 AATLYGFAMALGLLEQKIHARGPGELDEQPAEI--LHGDMVQPLRVKVDREARRLAGYRY 207
              L         L ++       ++     +      ++ +  R + + + +  +    
Sbjct: 123 DDYLSMIEYVRKDLGKRPLNAYVSKIKPDAFKKISEWEELEKQWRKEYEEKIKEDSSKPV 182

Query: 208 GRQIADDYLTQLGQGEEQ 225
             +  + Y +   + E+ 
Sbjct: 183 SYEFKETYPSCYEKDEKS 200


>UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=Proteobacteria
           RepID=NUOB2_RHOS1
          Length = 205

 Score =  176 bits (446), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 9/201 (4%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           MS  +G R     P        + +    L+    R   ++  + G  + C +E+   L+
Sbjct: 1   MSWTIG-RPDAEAPEDRMAASHLFTRLDDLVAW-SRKHSLWPFNFG-LSCCYVEMATALT 57

Query: 61  PLFDAERFGIKVVPS-PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
           P++D  RFG +V+ S PR AD+L+ +G V R M  P  R +    +P+  IS GAC NSG
Sbjct: 58  PVYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSG 117

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
           G++ D+Y V  G D  +PVDVY+PGCPP P A +    +    +  +        + E  
Sbjct: 118 GMY-DIYSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKIATEARPLQI-RMGETG 175

Query: 180 AEILHGDMVQPLRVKVDREAR 200
                  +    R    REAR
Sbjct: 176 PARPFDPIP---RRDALREAR 193


>UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Proteobacteria RepID=D0L1N9_HALNC
          Length = 274

 Score =  176 bits (445), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 89/164 (54%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
            D + +  P T D+ +       L    RS ++  VD G CNGCE EI A L+P ++  R
Sbjct: 108 ADLSRLARPATPDKKLEEKWQKSLAGFGRSLHIRHVDAGSCNGCESEISALLNPFYNLHR 167

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
            G+   PSPR AD+LL TG VT  MR P LR +++ P+P+  ++ G C   GG     Y 
Sbjct: 168 LGVFFTPSPRFADLLLVTGPVTEVMREPLLRTFEAMPEPRWVMALGTCATGGGTNGGGYA 227

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
              G D I+PVD+++PGCPP PAA +    + L    Q++H   
Sbjct: 228 CHQGLDGILPVDIWLPGCPPNPAAIIEALLVLLDRRPQQVHGGR 271


>UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI98_9EURY
          Length = 206

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRA 91
           K  RS  ++ +  G    C IE+    +   DAER G      +PR  D+++  G VT++
Sbjct: 52  KWSRSNSMWPMLFG-LACCAIELMDFGAARIDAERKGYLLFRGTPRQCDVMIVAGWVTKS 110

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M     R ++    PK  ++YG C  +GG +++ Y +  G D+++PVDVY  GCPP P  
Sbjct: 111 MVPRVKRLYEQMASPKYVVAYGECATAGGPWYESYNIVKGIDQVLPVDVYAIGCPPKPEN 170

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPL 191
                      L++K+  +  G  +   AE       + +
Sbjct: 171 LFAALM----KLQEKVGGKVAGSEERTIAENPRRAENERV 206


>UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_SALRD
          Length = 213

 Score =  175 bits (443), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 3/185 (1%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPS 75
            T  +   + +        RS  +  +  G    C IE+     P +D+ RFG + +  S
Sbjct: 6   GTNGQGFFTTRVDTFLNWARSNSLMPMPMG-LACCAIEMMGFAGPKYDSARFGSEAMRFS 64

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G  +  M     R W    DPK CI+ GAC ++GG+ H  Y V  G D  
Sbjct: 65  PRQADLMIVAGWCSYKMSHAIRRVWDQMGDPKWCIAMGACASTGGM-HRCYGVVQGVDNF 123

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
           +PVDVYI GCPP P + L+        +  +       E  +                  
Sbjct: 124 LPVDVYISGCPPRPESVLHALMDIQEKIRNEYSVVQDYEFGKARERAPIMPENTNRFPGQ 183

Query: 196 DREAR 200
             + +
Sbjct: 184 LEKPK 188


>UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_FRAAA
          Length = 281

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 9/176 (5%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADI 81
           + +    L    +RS  ++    G    C IE+ +T +  +D  RFG++    SPR AD+
Sbjct: 12  LLASVEKLANWSRRS-SLWPATFG-LACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADL 69

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G V++ M     + +   P+PK  +S G C +SGG+F + Y +  G D IVPVD+Y
Sbjct: 70  MIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMF-NNYAIVQGVDHIVPVDMY 128

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           +PGCPP P   +         +       GP        E       +P+ V   R
Sbjct: 129 LPGCPPRPEMLMDAIIKLHEKI-----LAGPVTGRTAHTESGSSPYPKPIDVATAR 179


>UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_SORC5
          Length = 194

 Score =  174 bits (442), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 3/159 (1%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADIL 82
           A+ +   L    +   +++        C +E  A  SP FD  RFG +    SPR AD+L
Sbjct: 22  ATTRVDALLNWAKKYSLFQYPF-VTACCGMEYMAMASPRFDMARFGAEVPRFSPRQADLL 80

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
              G +++       R ++   DPK  +++G C + GG F+D Y    G DK++P DVY+
Sbjct: 81  WVVGTISQRQAPALKRIYEQMADPKWVLAFGTCASCGG-FYDNYTTVAGIDKVIPCDVYV 139

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE 181
           PGCPP P A L G  +    + +        +  E PA+
Sbjct: 140 PGCPPRPEAVLDGLMLLQDKIARGDRTPAIVKPREDPAQ 178


>UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Aquificales
           RepID=B2V8R1_SULSY
          Length = 173

 Score =  174 bits (442), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 4/148 (2%)

Query: 19  VDESIASMKASLLKKIKR----SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            DE++  +   L +KI +    S  +  VD G CN CE EI A  +P +D ERFG+K V 
Sbjct: 21  RDENVEILGKQLKEKIDKYFQGSFAIREVDSGSCNACEYEISALSNPYYDIERFGVKFVA 80

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SP+HAD ++ TG +TR M    ++A+++ P+PK  I+ G C   GG F   Y V  G   
Sbjct: 81  SPKHADAIMITGCLTRNMYEAVMKAYENVPNPKFIIAVGDCALDGGTFKGSYAVMDGIKD 140

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGL 162
            +P+D++I GCPP P   + G  + L  
Sbjct: 141 KLPIDIWIKGCPPEPIDIISGLLILLNK 168


>UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=C5CEV5_KOSOT
          Length = 137

 Score =  174 bits (442), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 77/132 (58%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           K +KRS +V+ V    CN C+IEI   L+P +D ERFGIK+V S RHAD+LL TG     
Sbjct: 6   KILKRSLWVFHVSASPCNNCDIEILDMLTPRYDLERFGIKLVGSVRHADVLLVTGMGGCK 65

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           +    +R +  AP P   I+ G C  +G  F + Y   G  D+ VPVD+YIPGCPP P  
Sbjct: 66  VSERVIRIYNQAPKPVFVIAVGTCPVAGATFKESYTRCGPLDRFVPVDLYIPGCPPKPET 125

Query: 152 TLYGFAMALGLL 163
            + G +  LG L
Sbjct: 126 MIAGLSELLGRL 137


>UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=Firmicutes
           RepID=NUOB_DESRM
          Length = 196

 Score =  174 bits (441), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 15  VPMTVDESIASM---KASLLKKIKRSAYVYRVDCGGCNGCEIE-IFATLSPLFDAERFGI 70
            P  + E   ++       L  + R+  ++ +  G    C IE + A     FD  RFG 
Sbjct: 32  EPAVIGEVARTVSVGPLEKLLNLARANSLWPMGFG-LACCAIEGLMAANMARFDLARFGY 90

Query: 71  K-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
           + +  SPR AD++L  G VT+      +R ++   +PK  I+ G+C  SGG F D Y V 
Sbjct: 91  EVMRASPRQADVMLVCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPFVDSYSVV 150

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            G DK++PVDVYIPGC P P A ++GF      +
Sbjct: 151 PGVDKLIPVDVYIPGCAPRPDAVIHGFMKLKEKI 184


>UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Tax=Thaumarchaeota
           RepID=A0RY66_CENSY
          Length = 160

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 6/155 (3%)

Query: 21  ESIASMKASLLKKIKR--SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPR 77
           E              R  S +   ++      C +E  A   P +D ERFGI     S R
Sbjct: 9   EKAIDKPLGYAINWGRIWSLWPVHIET---ACCSVEFGAASGPKYDVERFGIIEAFGSLR 65

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
             D+++  G +TR M       +   P+PK  I+ GAC  +GG++ D Y V  G D ++P
Sbjct: 66  QCDLIVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLP 125

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           VDVY+PGCPP P   + G  +    +++    +  
Sbjct: 126 VDVYVPGCPPRPETLIQGCMLLQEKIKRMRARKEV 160


>UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Proteobacteria
           RepID=NUOB_SHEWM
          Length = 213

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 90/195 (46%), Gaps = 8/195 (4%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
             +   +   V++++   +   L    RS  ++  + G  + C +E+  + +   D  RF
Sbjct: 12  PTSTQTMQEVVEKNLLVTRLEDLVAWGRSNSLWPFNFG-LSCCYVEMATSFTSRHDIARF 70

Query: 69  GIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
           G + +  +PR AD+++ +G V   M       +    +PK  I  G+C NSGG++ D+Y 
Sbjct: 71  GSEVIRATPREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVICMGSCANSGGMY-DVYS 129

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM 187
           V  G D+ +P+D+Y+PGCPP P A +YG  +    +        P +       I   + 
Sbjct: 130 VVQGADRFLPIDLYVPGCPPRPEALMYGLTLLQEAI----KDGAPRQARPLNRTI-TPEE 184

Query: 188 VQPLRVKVDREARRL 202
           +Q    +  R+ +  
Sbjct: 185 IQAFACRNMRDEKHE 199


>UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=2 Tax=Bacteria
           RepID=UPI00016C3AA7
          Length = 201

 Score =  174 bits (440), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 16  PMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VV 73
              + + + +    L    ++ S +           C IE+ AT S  +D  RFG + + 
Sbjct: 4   TNMLPDFMIAPLDYLANMARKHSLWPMPFAT---ACCGIELMATASSRYDIARFGSEAMR 60

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR  D+++  G V   M     R W   P+PK CIS GAC +SGG+F D Y V  G D
Sbjct: 61  FSPRQCDVMIVAGRVAMKMVPVMQRIWLQMPEPKWCISMGACASSGGVF-DTYAVVQGID 119

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           + +PVDVY+PGCPP P   +         +++
Sbjct: 120 RFIPVDVYVPGCPPRPEQLIRAVLDLQEKIQK 151


>UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW47_ACICJ
          Length = 264

 Score =  172 bits (437), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 60/144 (41%), Positives = 81/144 (56%), Gaps = 1/144 (0%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           +  +RS +V  VD G CNGCE E+ A  +P ++  R GI   PSPR AD+LL TG VTRA
Sbjct: 122 RGFRRSLHVRHVDAGSCNGCESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRA 181

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M  P  R W++ P P+  ++ G C  SGGI         G ++ +PVD+Y+PGCPP PAA
Sbjct: 182 MLEPLRRTWEAMPAPRWVMASGTCAVSGGIAPGGP-CLSGLEEALPVDLYLPGCPPNPAA 240

Query: 152 TLYGFAMALGLLEQKIHARGPGEL 175
            +    M LG   Q++        
Sbjct: 241 IIEALLMFLGRRAQRVRGGRIDGE 264


>UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=1 Tax=uncultured
           methanogenic archaeon RC-I RepID=Q0W6T1_UNCMA
          Length = 135

 Score =  171 bits (433), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/134 (47%), Positives = 84/134 (62%), Gaps = 2/134 (1%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +  IKRS +VY    GGC GC+IE+ A++ P +D ER G+++VPSPR+AD+LL TG V  
Sbjct: 1   MNMIKRSPWVYHAHAGGCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPL 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHD--LYCVWGGTDKIVPVDVYIPGCPPT 148
             +    R +   P+PK  I+ GACG S G+F D   Y + G  DKI+PVDV IPGCPP 
Sbjct: 61  HTKPFLERVYAQTPEPKRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPK 120

Query: 149 PAATLYGFAMALGL 162
           P A + G    L +
Sbjct: 121 PEAIMEGIIKVLRM 134


>UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit n=4 Tax=Archaea
           RepID=B6YWP9_THEON
          Length = 191

 Score =  170 bits (431), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 92/159 (57%), Gaps = 11/159 (6%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
            +K S +V+ ++ G CNGC+IEI    +P  D ER GIK+V SPRHAD + FTG +TR  
Sbjct: 1   MVKNSLWVFHLNSGSCNGCDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITREC 60

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI-----------VPVDVY 141
               + A ++ P+PK+ ++ GAC   GGI++D Y V GG  ++            P  V+
Sbjct: 61  LPKVIDALKAVPEPKVVLAIGACACGGGIWYDTYSVIGGVKELYRILKEEYNMEPPATVF 120

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           IPGCPP P A +YG A+A G+LE K       E +E  A
Sbjct: 121 IPGCPPKPEAIIYGVAVASGMLESKQKKTVYVEPEESVA 159


>UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteria
           RepID=Q2T5T7_BURTA
          Length = 174

 Score =  170 bits (430), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 1/158 (0%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           P +      P         ++  +L  + R+  +  +D G CNGCE+E+ A  +P ++ E
Sbjct: 14  PDEPAPAGEPA-WQRDAQPIRQEILDILGRALCIRAIDAGSCNGCELELNALGNPYYNIE 72

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
             GIK V SPRHAD+LL TG +T  MR     A+ + P PK+ ++ G C  +GG+F   Y
Sbjct: 73  GLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVVAAGDCACTGGVFAGSY 132

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
            V G  + +VPVDV I GCPP P   L G   AL  + 
Sbjct: 133 AVCGPVETLVPVDVAIAGCPPRPIDLLRGIRGALERVR 170


>UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Epsilonproteobacteria RepID=B9L626_NAUPA
          Length = 157

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           +  +         +S ++     G    C +E+ A + P +D ER+G  + P+PR ADI+
Sbjct: 1   MLKVLDFFNYARSKSPWIVHFCSG---CCSLEMLAAMGPRYDWERYGYIMTPTPRQADIM 57

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
             TG V++ +    LR ++  P+P+  ++ GAC   GG ++D   V     +I+P DV++
Sbjct: 58  FITGLVSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSVSVIKNMTEILPADVFV 117

Query: 143 PGCPPTPAATLYGFAMALGLLEQ 165
            GCPP P A + G       +++
Sbjct: 118 AGCPPRPEAIIAGLEELKEKIKR 140


>UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarchaeota
           RepID=Y516_METJA
          Length = 148

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/142 (42%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           KRS +V  V+ GGCNGC+IEI A L+P +D E++GI V  +PR AD+LL TG VT     
Sbjct: 8   KRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWAE 67

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
                ++  P+PKI ++ GAC  SGGIF + + V GG DK++PVD  IPGCPP P+  + 
Sbjct: 68  RLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEIIE 126

Query: 155 GFAMALGLLEQKIHARGPGELD 176
                          R   + +
Sbjct: 127 TILKVAPKAIAMREKRLKNKDE 148


>UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfitobacterium
           hafniense RepID=Q24ST9_DESHY
          Length = 155

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 81/133 (60%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
             + L+ +++S ++  +DCG CNGC+ E+ A L+P++D +RFG+  V SPRHADIL+ TG
Sbjct: 22  GEAHLRSLRQSWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTG 81

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
            ++  +   AL  ++  P+PK  I+ G C   GG+F + Y    G  + +PVD+ IPGCP
Sbjct: 82  PMSTHLIQAALATYEGTPNPKRIIAVGDCALDGGMFKEAYAAHNGVGEALPVDIKIPGCP 141

Query: 147 PTPAATLYGFAMA 159
           P+P   L      
Sbjct: 142 PSPDELLKVLLQL 154


>UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=Flavobacteriaceae
           RepID=C6X0Z2_FLAB3
          Length = 185

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 3/159 (1%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-V 72
           P      E   + K S +  + R   ++ +     + C IE  A L+P +DA RFG++  
Sbjct: 14  PPEGFEGEGFFATKLSSVIGMARKYSLWPLPF-ATSCCGIEFMAVLNPTYDASRFGMERN 72

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
             SPR AD+L+  G +++ +     + +    +P+  ++ GAC +SGGIF D Y V  G 
Sbjct: 73  SFSPRQADMLMVCGTISKKLGPVLKQVYTQMAEPRWVVAVGACASSGGIF-DTYSVLQGI 131

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           DKI+PVDVY+PGCPP P   + G      L E +   R 
Sbjct: 132 DKIIPVDVYVPGCPPRPEQIIEGVMQVQALCEGESIRRR 170


>UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea RepID=B1L7S0_KORCO
          Length = 174

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADI 81
           +   ++      I  S +           C  E  A+ +P +DAER G       R  ++
Sbjct: 27  NKRPIRDIRDWGIAFSLWPVHFTT---ACCGAEFAASAAPKYDAERLGFLPFIGIRQCNV 83

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           L   G +++ M   A+  ++  P+PK  I  GAC   GGIF + Y +    D I+PV+V+
Sbjct: 84  LFIEGTLSKKMAEAAIWVYEQMPEPKFVIGMGACAIDGGIFWNSYNIVRPMD-ILPVNVF 142

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
           IPGCPP P A      M    + +    +   
Sbjct: 143 IPGCPPRPEAVAQAIIMLQRKIRKGELVKYED 174


>UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Epsilonproteobacteria
           RepID=A6Q6W5_SULNB
          Length = 168

 Score =  167 bits (422), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 11  NGIPVPMTVDESIASMKASLLKKIKR----SAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
             +     +D+ + ++K  + + +K+    S  +  VD G CN CE E  A  +P +D E
Sbjct: 12  GILTEDTALDKELEAIKREIKENVKKKFAGSLAIRMVDSGSCNACEAECNALSNPYYDLE 71

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           R GI  V SPRHAD++L  G +T  M    L A++  P+PK  I+ GAC      F   +
Sbjct: 72  RLGIYFVASPRHADVMLLNGLMTFNMTPHVLDAYKQIPEPKWVITLGACPVMEAPFEKTF 131

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            V       +PV  +IPGCPP P   + G    L  +
Sbjct: 132 AVKAPAADHLPVAHHIPGCPPEPLEIIRGLLEFLKKI 168


>UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (MbxJ) n=11
           Tax=cellular organisms RepID=C5A4Q2_THEGJ
          Length = 194

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 7/185 (3%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +   L +  ++ +      C GC G  IE+    +  +D ERFGI   P+PR AD+ L
Sbjct: 15  FKLFEPLFRWARKKSLWIVAFCTGCGG--IEMPPLATARYDFERFGIMPNPAPRMADLFL 72

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG VT       +  ++   DPK  +++G+C  +GG++ D Y V    DK +P+DV I 
Sbjct: 73  ITGYVTPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIA 132

Query: 144 GCPPTPAATLYGFAMALGLLEQKIHA--RGPGELDEQPAEILHGDMVQPLRVKVDREARR 201
           GC P P A + G    +  +E       +   E  E   +       +  R   +++A+R
Sbjct: 133 GCMPRPEAVMDGIMEIMRKIENGEADGWKRYRENYEWYRKNQDELFGEGWR---EKDAKR 189

Query: 202 LAGYR 206
              + 
Sbjct: 190 WLAWL 194


>UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2
           Tax=Proteobacteria RepID=Q21TB3_RHOFD
          Length = 254

 Score =  163 bits (413), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 75/139 (53%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +  +L K+  RS  +  V  GGC+GCE+EI A  +  FD  R+GI +V SPRHAD L+
Sbjct: 114 IKVSKALHKRFGRSLKLRSVSAGGCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALV 173

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            +G +TR M       W + P+PK+ I+ GAC  SGG+F D   +           +Y+P
Sbjct: 174 LSGPITRNMAQALQICWDAIPEPKLVIAVGACAISGGVFADSDALDRQFLDNFKPALYVP 233

Query: 144 GCPPTPAATLYGFAMALGL 162
           GCP  P   + G    LG+
Sbjct: 234 GCPAHPLTFISGIMDLLGI 252


>UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 Tax=Magnetococcus
           sp. MC-1 RepID=A0L9R6_MAGSM
          Length = 213

 Score =  163 bits (413), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
               +   E +  ++   L    RS  ++ +  G      IE+   ++P FDA R+G++ 
Sbjct: 30  ATPTVQTGEYLQIVED--LFNWARSNSIWVLGFG-TGCGAIEMRPLMTPRFDAYRYGVQW 86

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
             +PR +++ + +G ++       +RA++    PK  +  G+C  +GG++ D Y      
Sbjct: 87  RATPRQSNLFIVSGYLSVKTLKRVVRAYEQMQSPKYVMGLGSCTINGGMYWDSYNTIKQL 146

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           D  +PVD+Y+ GC P P A L G   AL  + ++    G     E+
Sbjct: 147 DDYLPVDLYVTGCMPRPEALLSGI-EALKKIIREGRGEGANIYAER 191


>UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japonica Group
           RepID=C7IWD0_ORYSJ
          Length = 379

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 2/166 (1%)

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
              FD +R+G+    SPR AD++L  G VT  M    +R ++  P+PK  I+ GAC  +G
Sbjct: 150 GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 209

Query: 120 GIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           G+F  D Y    G DK++PVDVY+PGCPP P A +      LG L   + A      + +
Sbjct: 210 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLLG-LALNLRAYDFVSQEIR 268

Query: 179 PAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEE 224
            AE    +      + ++   R     +        +  +L +  E
Sbjct: 269 AAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEELIRVSE 314


>UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=1 Tax=Conexibacter woesei
           DSM 14684 RepID=UPI0001C31273
          Length = 229

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 4/166 (2%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPR 77
           V+E + +     +    R   ++    G    C IE+ +      D  RFG +    SPR
Sbjct: 44  VEERVLTTTLDKVTAWARGNSMFPATFG-LACCAIEMMSLPGARLDIGRFGFEAFRASPR 102

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+L+ +G V+  M     R +    +P+  IS GAC +S G+F + Y +    DK +P
Sbjct: 103 QADMLILSGRVSIKMAPIVRRIYDQMLEPRWAISMGACCSSMGVF-NNYALV-PADKFMP 160

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEIL 183
           +DV++PGCPP P A  +        +     A      +    E +
Sbjct: 161 IDVHVPGCPPRPEALAHAILKLRSKVHGNPPAGWRERYEAVGTEEV 206


>UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q6C2Q1_YARLI
          Length = 216

 Score =  160 bits (406), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           S++           P +  +   +   ++    ++    + V  G    C +E+    +P
Sbjct: 39  SSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQG-SFWPVTFG-LACCAVEMMHVSAP 96

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +D +R GI    SPR +DI++  G +T  M     + +   P+P+  IS G+C N GG 
Sbjct: 97  RYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSCANGGGY 156

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPT 148
           +H  Y V  G D+IVPV        P 
Sbjct: 157 YHFSYSVVRGCDRIVPVRRLRSRMSPH 183


>UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea
           RepID=Q64DY8_9ARCH
          Length = 788

 Score =  160 bits (406), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 13/178 (7%)

Query: 17  MTVDESIASMKASLLKKIKR-----SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK 71
              D +I  + + +   ++R     S +         + C +E+  T +  +D ER G  
Sbjct: 4   TEKDRNIRILHSGVFTPLRRWATKWSLWPCHFLT---SCCGVELAHTGACGYDMERLGTL 60

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
            +   R A+ ++  G +TR M       W+  PDPK     G CG  GGIF + Y +   
Sbjct: 61  NMGISRQANFIMVEGTITRKMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRP 120

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
           +D IVPVD +IPGCP TP + L G       +E     R    +  +  E+  GD  +
Sbjct: 121 SD-IVPVDFFIPGCPITPESLLRGVRAVQEKIE----GRDNTTIRFKHVELPSGDGEE 173


>UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=cellular
           organisms RepID=A9BJL8_PETMO
          Length = 195

 Score =  160 bits (404), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPR 77
           ++++I   +        +S ++       C GC  +E+  T++  FD ER G+  + +PR
Sbjct: 17  LNDTITFWEKIKNIFRGKSLWMLHY----CTGCGAVELPPTMTARFDMERLGMGPMATPR 72

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+LL TG ++       +  ++    PK  + +G+C  +GGI++D Y V    D  +P
Sbjct: 73  QADVLLITGYLSVKTLRRVIYTYEQMMTPKYLVGFGSCTINGGIYYDSYAVINRLDYYLP 132

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           VD+Y+ GC P P A +  F     ++ +
Sbjct: 133 VDLYVAGCMPRPEAIMNTFKTLENMITK 160


>UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=Staphylothermus
           marinus F1 RepID=A3DM92_STAMF
          Length = 179

 Score =  159 bits (403), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 27  KASLLKKIK-RSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
           K    + ++ RS ++       C+ C  IE+   +    DAER+GI   PSPR AD+L+ 
Sbjct: 8   KLGFAEWVRSRSIWMIHY----CSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVI 63

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            G VT+      +R +   P+P+  +    C  +GG++ D Y      D+ +PVDV++PG
Sbjct: 64  MGYVTKKTLKVLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPG 123

Query: 145 CPPTPAATLYGFAMALGLLEQ-KIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
           C P     L GF      + + +I    P E   +  E+++ ++   +R K+  + R
Sbjct: 124 CMPRAEDWLQGFLKLRKKISEGRIVNPRPVEEPGELEELIYREIE--MREKMMAKVR 178


>UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=Thermoproteaceae
           RepID=A4WJL4_PYRAR
          Length = 196

 Score =  157 bits (397), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A ++      ++ S +   +     + C +E+  T  P FDAER+G+    + R ++++L
Sbjct: 20  AKLEKIFNWGVRWSLWPVHLVT---SCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVIL 76

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
             G +TR M       ++  P+PK  ++ GAC   GG+F + Y V      +  VDVYI 
Sbjct: 77  VEGTITRKMAKVLKMVYEQMPEPKFVLAMGACAVRGGLFWNSYHVVQVDTVVP-VDVYIA 135

Query: 144 GCPPTPAATLYGFAMALGLLEQKI 167
           GCPPTP A +  F M    ++ K 
Sbjct: 136 GCPPTPEAVVRAFIMLHNKIKGKP 159


>UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=Acetobacter
           pasteurianus RepID=C7JEU9_ACEP3
          Length = 165

 Score =  156 bits (395), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/128 (42%), Positives = 73/128 (57%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           +    ++ VD GGC GC +E+ A     +D E  G   V SPR+AD+LL TGA+TRAM  
Sbjct: 25  RWPLLLFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAP 84

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
               AWQ+ P PK  I+ G+C   GG+F + Y V GG ++ V +D+ IPGCPP P   L 
Sbjct: 85  VLEAAWQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLN 144

Query: 155 GFAMALGL 162
           G     G 
Sbjct: 145 GLCSLFGK 152


>UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Desulfovibrio
           RepID=B8IYV4_DESDA
          Length = 254

 Score =  156 bits (394), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 73/128 (57%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            +RS  + +V   GCN CE +     + +FD  RFGI  V SPRHAD ++ TG V+  MR
Sbjct: 127 FRRSLKLRQVSAAGCNACEADCNVLGTLVFDLPRFGIDFVASPRHADGIVLTGPVSENMR 186

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
             A+  + + P+P++ ++ GAC  SGG+F D      G   I+PVD+++PGCPP P   L
Sbjct: 187 LAAIDTYNATPEPRLVVAVGACAISGGLFRDAPQCNNGIADILPVDLFVPGCPPNPWTIL 246

Query: 154 YGFAMALG 161
            G  M   
Sbjct: 247 DGLLMLRE 254


>UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=13 Tax=Bacteria
           RepID=B5E8B5_GEOBB
          Length = 332

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 4/178 (2%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-LFDAERFGIKVVPSPRHADILLF 84
           M+  + +       ++R++ G CNGC++E+  T +   FD E+ G +    P  ADILL 
Sbjct: 1   MQDQVKETPAEPVRLFRINTGSCNGCDVELAVTAAVDEFDVEQLGCRYTEEPHEADILLI 60

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
           TG +T   R+ ALR +  AP+ K+ ++ G C  SGG+F D Y V G   + +PVD+ +PG
Sbjct: 61  TGPLTVRARNEALRLYAEAPETKVTVAVGVCPVSGGVFRDSYAVDGPVQRYLPVDLNVPG 120

Query: 145 CPPTPAATLYGFAMALGLLEQKIHARGPG---ELDEQPAEILHGDMVQPLRVKVDREA 199
           CPP P A L G A A  L   +              +PA+          R+  D +A
Sbjct: 121 CPPRPQALLAGIAQARDLWRARSKGVDAVFAAPPLAKPADEPAQQFPIRGRMSFDPKA 178


>UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospirillum
           RepID=A3ETD3_9BACT
          Length = 169

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/125 (37%), Positives = 63/125 (50%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
             S  +  VD G CN CE+E+ A     +  ER GI+ V SPRHAD+LL TG V+  M  
Sbjct: 33  GGSLSIRHVDAGSCNACELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQMEQ 92

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
           P L   ++   PK  ++ G C   GG+F     V  G D + P    +PGCPP+P+  L 
Sbjct: 93  PLLDTHEAMASPKTVLAVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDILR 152

Query: 155 GFAMA 159
                
Sbjct: 153 ALRGL 157


>UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Actinomycetales RepID=A1SQ82_NOCSJ
          Length = 162

 Score =  154 bits (389), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 73/129 (56%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           +  S  +  VD G CNGCEIE+     P++DAER+G ++V SPRHAD++L TG VT  M 
Sbjct: 34  LAGSVQIRHVDAGSCNGCEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNML 93

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
            P  R  ++ P P++ ++ G C  + G F   Y V G     V VD+ +PGCPP PAA +
Sbjct: 94  EPLRRTVEATPRPRLVLAVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIV 153

Query: 154 YGFAMALGL 162
                  G 
Sbjct: 154 DALRRVTGR 162


>UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=Selaginella
           uncinata RepID=Q2WGH7_SELUN
          Length = 215

 Score =  153 bits (386), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 3/171 (1%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
           R   G+    T D  I +       + +  +        G + C  E    +    D++R
Sbjct: 28  RPTPGVDRAATPDSIIPTTPNDFTNRARLPSSRPPPY--GTSCCFTEFAPLIGSRSDSDR 85

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH-DLY 126
            G     SPR AD+++  G  T  M    +R+++  P+PK  I+ GAC  +GG+   D +
Sbjct: 86  HGSVPRSSPRQADLIITAGTATTKMAPSLVRSYEQTPEPKHAIAMGACTVTGGMLSTDPH 145

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
               G DK +P D Y PG PP P A +         + ++ +     +L E
Sbjct: 146 STVRGVDKSIPADTYPPGRPPKPEAIVDATIKPREKVSRETYDNYRDKLRE 196


>UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meiothermus silvanus
           DSM 9946 RepID=C1XWY8_9DEIN
          Length = 290

 Score =  152 bits (385), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 77/162 (47%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
           +     V  G     + E+    +P  D  RFG  VV SPRHAD LL TG V++ MR   
Sbjct: 127 TLAFREVSAGNTGLDDTEVALAGNPFHDMSRFGFSVVASPRHADALLVTGPVSQNMREAL 186

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
            R +Q+ P+PK  ++ G     G IF +   V GG D++VPVDVY+PG P  PA+ L+G 
Sbjct: 187 WRTYQATPEPKGVVAVGNEAIGGEIFAESAAVVGGVDQVVPVDVYVPGSPARPASILHGL 246

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDRE 198
            +  G  +Q +      E   Q      G      R +   E
Sbjct: 247 LLLSGQTQQVLVGGRLHEERTQVVSSEAGVEASSRRAERGEE 288


>UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus
           profundus DSM 5631 RepID=D2RET0_ARCPR
          Length = 709

 Score =  152 bits (383), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 10/233 (4%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           M      K   S +   +       C +E+    +  +DAER G       R  ++++  
Sbjct: 1   MLKEWGTKW--SLWPVHLVT---ACCGVELAHAYACGYDAERIGSLNYGICRQTNLIIVE 55

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           GA+TR M       W+  P+PK  I  GACG  GG+F + Y +    D +  VDV++PGC
Sbjct: 56  GAITRKMARVLRITWEQMPNPKFVIVMGACGIKGGLFKNSYHMVRPWDVVP-VDVFVPGC 114

Query: 146 PPTPAATLYGFAMALGLLEQKIHARGPGE--LDEQPAEILHGDMVQPLRVKVDREARRLA 203
           PPTP A + G       +E K       E  ++ +  ++     ++  RV+       + 
Sbjct: 115 PPTPEALIRGIVALQKKIEGKEDFDKFEEVSIEVEKGKVRKLPPLKEFRVENPAVVPNVE 174

Query: 204 GYRYGR-QIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHL-NHVVEEARI 254
             R    +  +D L        +   +   ++  R  EI++HL    V++  +
Sbjct: 175 RGRDDYAKTLEDVLGVRVYTVGKDHYYAFVDDVKRSAEILAHLGFDNVKDVNV 227


>UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermoplasmatales
           RepID=Q978D5_THEVO
          Length = 222

 Score =  151 bits (381), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 7/149 (4%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP 76
            T D+ I ++K +     +RS +V+ +D G C  C +E  +  SP +DA R GI +V +P
Sbjct: 69  PTGDQRIFTIKKT-EDTFRRSFHVFPIDSGACGACNMEFLSIFSPQYDANRLGIFMVNTP 127

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           R+AD L+  G +T  M+    RA+++ P+PK+ I+ GAC  +GGI  +        D+  
Sbjct: 128 RYADALIVMGVMTPGMKEALDRAYEAMPEPKLVIAMGACAVTGGIMGE-----NPLDRE- 181

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
             +V I GCPP+P   +     A+    +
Sbjct: 182 KYNVEIAGCPPSPYTLIAALNAAMKDKRK 210


>UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=2
           Tax=Gluconacetobacter diazotrophicus PAl 5
           RepID=B5ZJ00_GLUDA
          Length = 166

 Score =  150 bits (378), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 71/128 (55%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            R   V+ V+ GGC GC +E+ A     +     GI  V +PR A++LL TG +TRAM  
Sbjct: 22  ARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAP 81

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
               AW + P+P+  ++ GAC   GG F + Y V GG +    +D+ +PGCPP+PAA L 
Sbjct: 82  VLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDMTVPGCPPSPAAILA 141

Query: 155 GFAMALGL 162
           G A  L  
Sbjct: 142 GLARVLER 149


>UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Metallosphaera sedula DSM 5348 RepID=A4YGN5_METS5
          Length = 203

 Score =  150 bits (378), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 72/152 (47%), Gaps = 8/152 (5%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
           PV     E++           KRS Y+Y +D G C GC +E+    SP +D  RFGI   
Sbjct: 60  PVFSPTGETLTPRVERSDVTFKRSFYLYPLDAGSCGGCNLELRLISSPQYDMTRFGIFFT 119

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            +P+HAD LL  G + + M     RA+   P PK+ I  G C  SGG+         G  
Sbjct: 120 NTPKHADALLIMGNLGKRMEEVIRRAYDVIPSPKLVILLGTCAISGGV--------TGIP 171

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
             +  DV +PGCPPTPA+ L     A G   +
Sbjct: 172 PDIRGDVIVPGCPPTPASILDALIKAKGGDRK 203


>UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarchaeota
           RepID=Y1363_METJA
          Length = 151

 Score =  149 bits (377), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 8/139 (5%)

Query: 35  KRSAYVYRVDCGGCNGCEIEI-FATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           K+  +V  V  GGCN C+IE+  A  SP +DAE++ + +  +PR ADIL+ TG VT+ + 
Sbjct: 11  KKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVA 70

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHD-------LYCVWGGTDKIVPVDVYIPGCP 146
               + ++  P+PK  ++ GAC   GG++ +          V G  + I+PVDV +PGC 
Sbjct: 71  ESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCA 130

Query: 147 PTPAATLYGFAMALGLLEQ 165
           P P   + G   AL  + +
Sbjct: 131 PRPEDIIAGIVKALPKVIE 149


>UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Euryarchaeota
           RepID=C5U7Y6_9EURY
          Length = 154

 Score =  149 bits (377), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 10/147 (6%)

Query: 30  LLKKIKRS--AYVYRVDCGGCNGCEIE-IFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
           L+KKI R    +V  V  GGCNGC+IE + A  SP +DAE++ + +  +PR  DIL+ +G
Sbjct: 8   LMKKISRKKCIHVMLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTFNPRETDILIVSG 67

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD-------LYCVWGGTDKIVPVD 139
            VT+ ++    + ++  P+PK  ++ G+C  +GG++ +          V G  + I+PVD
Sbjct: 68  CVTKFVKESLRKIYEKIPEPKAVVAIGSCALTGGVYKNIGGDLGTSDFVAGPVENIIPVD 127

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQK 166
           V +PGC P P   + G   A+ L+ ++
Sbjct: 128 VKVPGCAPRPEDIISGIVKAIPLVVER 154


>UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (NADH-ubiquinone oxidoreductase 20 kDa subunit) (Complex
           I-20kD) (CI-20kD) (PSST subunit). n=1 Tax=Gallus gallus
           RepID=UPI0000EC9F96
          Length = 176

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 8/167 (4%)

Query: 7   PRDANGIP----VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           P+ +  +P    VP +  E I +    L+   +R A  +       +     +   L   
Sbjct: 6   PKSSAVVPKKSYVPTSRGEYIVTKLDDLINWARRRACFW---TECFHCVASNMGYLLWKS 62

Query: 63  FDAERFG-IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +   FG I++      +   L        +      A    P+      + +C N GG 
Sbjct: 63  HERSSFGLIQLTAHMPMSTACLPARPHENHLSPHLTSAAGLGPELCFTNIFCSCANGGGY 122

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       ++++  
Sbjct: 123 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRERK 169


>UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Sulfurospirillum deleyianum DSM 6946
           RepID=D1B297_SULD5
          Length = 138

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/134 (41%), Positives = 71/134 (52%), Gaps = 1/134 (0%)

Query: 37  SAYVYRVDCGGCNGCEIEIFA-TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           + YVYR++ G CNGC++EI A  L P F  +  G      P  A+ILL TGA+T      
Sbjct: 4   TLYVYRINTGSCNGCDVEILASVLLPKFGFDALGCVYTNDPTLANILLVTGAITARSTPY 63

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
              A +  P  KI ++ G C  SGG+F D Y + G  D  V VDV I GCPP+P     G
Sbjct: 64  LQAALKQLPSKKIVVALGICPISGGVFRDSYAITGPLDTFVDVDVNISGCPPSPKEIAQG 123

Query: 156 FAMALGLLEQKIHA 169
            A A  L  ++ HA
Sbjct: 124 LAQACELWRERYHA 137


>UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=Sulfolobus
           RepID=D2PJN5_SULIS
          Length = 201

 Score =  147 bits (370), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 8/129 (6%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            KRS Y+Y +D G C GC +E+    SP +D  RF I    +PRHAD L+  G +T  M+
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               +A+++ P+PK+ I  GAC  SGGI  +           +   V I GCPP P   L
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG--------VPLEAVVEISGCPPNPFTIL 192

Query: 154 YGFAMALGL 162
                  G 
Sbjct: 193 EALMKVKGK 201


>UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=19 Tax=Bacteria
           RepID=B1ZSE7_OPITP
          Length = 285

 Score =  145 bits (366), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/130 (40%), Positives = 71/130 (54%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
            A++   L K   RS  + +V  GG    E ++    +  +D  RFGI+ V SPRHAD L
Sbjct: 139 AAALDEKLRKMFGRSLRLRQVSAGGSGAEEADLNVLGTIGWDLGRFGIQFVASPRHADGL 198

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           + TG V++ M     + W++ P PKI I+ GA   SGG+F     V  G D IVPVD+YI
Sbjct: 199 VVTGPVSKGMELALRKTWEAMPAPKIVIAVGAEAISGGVFAGHPQVRNGVDAIVPVDLYI 258

Query: 143 PGCPPTPAAT 152
           PG PP P   
Sbjct: 259 PGWPPHPLTI 268


>UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=Ignicoccus
           hospitalis KIN4/I RepID=A8A9X3_IGNH4
          Length = 207

 Score =  144 bits (363), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 63/168 (37%), Gaps = 13/168 (7%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A +K +L    + S ++  +   G   C IE+        D ER G+    +PR  D++L
Sbjct: 18  APVKEALKWSRRNSLWLLHL---GIMCCAIEMMQAAFAFHDFERLGVLARATPRQVDVIL 74

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV----- 138
             G V R +     R +   P P+  I  G C  +GG +     V  G  +++       
Sbjct: 75  INGPVNRKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDGIHEVIESLPEEY 134

Query: 139 -----DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE 181
                 V + GCPP P   L        L+ +   AR P        E
Sbjct: 135 RKDVHVVNLAGCPPRPEGLLRAILKMEELINEGDLARAPLTRYRLHDE 182


>UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Caminibacter
           mediatlanticus TB-2 RepID=A6DAC3_9PROT
          Length = 140

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 38  AYVYRVDCGGCNGCEIEIFA-TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
             ++R++ G CNGC++EI A  +S  FD ++ G + + +   ADI + TG VT       
Sbjct: 7   PKIFRINTGSCNGCDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFL 66

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
               ++   P + IS G C  + GIF D Y + G  D  V VDV + GCPP P A L G 
Sbjct: 67  KEVIKNHKKPYVVISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGV 126

Query: 157 AMALGLLEQK 166
             A+ +L++K
Sbjct: 127 KTAIDILKRK 136


>UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN
          Length = 214

 Score =  140 bits (354), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 7/170 (4%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           +    P+     P P +  E + +    L+   +RS  ++ +  G    C +E+    +P
Sbjct: 42  TQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMHMAAP 99

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICIS--YGACGNSG 119
            +D +RFG+    SPR +D+++  G +T  M     ++    PD    +   +G     G
Sbjct: 100 RYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKS-PPRPDAGAALRGLHGELRQRG 158

Query: 120 GIFHDLYCVWGGTDKIVPVDVYI-PGCPPTPAATLYGFAMALGLLEQKIH 168
            +   L+ + G   +      ++ P  P T  A LYG       ++++  
Sbjct: 159 RLLP-LFLLGGEGLRPHRARGHLHPRLPTTAEALLYGILQLQRKIKRERR 207


>UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophilus torridus
           RepID=Q6L0U2_PICTO
          Length = 202

 Score =  139 bits (350), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA 79
           ++ I+ +  S+ KK ++S  +Y +D G C  C  E+F+   P +D  R+ I    +PRHA
Sbjct: 69  NDDISIISGSIDKKFRKSLNIYSIDSGTCGACNSELFSISIPEYDLTRYHIFFTNTPRHA 128

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D ++ +G    +M+     A  + P P   I  GAC  SGGI    +         +   
Sbjct: 129 DAIILSGIYNESMKDVIDNALGAMPKPGYLILLGACALSGGIIGSGHE--------IKAV 180

Query: 140 VYIPGCPPTPAATLYGFAMAL 160
           + IPGCPP P   L G    +
Sbjct: 181 LEIPGCPPNPYTILKGLRRLM 201


>UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shigella sp. D9
           RepID=UPI0001B52F0A
          Length = 173

 Score =  137 bits (344), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/117 (69%), Positives = 94/117 (80%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           + P     +  P+T+DE    MK  LL+ I+RSAYVYRVDCGGCN CEIEIFA ++P+FD
Sbjct: 1   MSPVLTQHVSQPITLDEQTQKMKQHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFD 60

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
           AERFGIKV+ SPRHADILLFTGAVTRAMR PALRA++SAPD KIC+SYGACG  GG 
Sbjct: 61  AERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGAGGGF 117


>UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW77_ACICJ
          Length = 164

 Score =  136 bits (343), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 63/141 (44%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           + RS  V  VD G C GCEIEI A           GI +V   R ADILL TG  TR + 
Sbjct: 22  LGRSLAVRHVDAGSCGGCEIEIAACRRLRGGMAAHGIAMVEDLRAADILLVTGVATRNLA 81

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               ++      P+  ++ G C   GG+F  +  V GG   ++PVD+ I GCPP P   L
Sbjct: 82  EAVRKSLAGMAPPRFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQIL 141

Query: 154 YGFAMALGLLEQKIHARGPGE 174
            G    +    ++        
Sbjct: 142 AGLVALVEANAREPRRARVEP 162


>UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulibacter bethesdensis
           CGDNIH1 RepID=Q0BPG7_GRABC
          Length = 174

 Score =  136 bits (342), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 1/152 (0%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
           D   +P   TV   IA  ++S   K+ ++  +  V+ GG + C +E+ A  +      R 
Sbjct: 17  DTASLPHAETVAALIARRRSSARPKLGQALSILHVESGGGSACLLELEALRAAPGLLARH 76

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           G++ V SP HADILL TG     + S   +AW++ P P+  I+ G      G+    Y  
Sbjct: 77  GLRFVTSPLHADILLITGDGCHNLTSAIHQAWEAMPGPRWAIAVGDGAAGDGLLRGSYAS 136

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
            G  ++ +P D+ IPG PP     L G    +
Sbjct: 137 TGNMEE-IPFDLVIPGSPPAADTILSGLRALV 167


>UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2
           Tax=Aciduliprofundum boonei T469 RepID=B5ICA0_9EURY
          Length = 179

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 12/131 (9%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             +S +++ +D G C+ C  EI    SP +D  R G    P PRHADILL  G  T  M 
Sbjct: 60  FNKSVHIFVLDVGSCSSCNREISLLNSPQYDLHRLGFFFTPVPRHADILLVIGEPTEKMI 119

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
                A++  P+PKI ++ GAC N               +KI+ VD  + GCPP P A L
Sbjct: 120 PVLKEAYEQMPEPKIVMTAGACAN------------EKIEKIIKVDARVSGCPPQPIAIL 167

Query: 154 YGFAMALGLLE 164
               M  G   
Sbjct: 168 KALLMLTGRWN 178


>UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans
           RepID=Q5FU78_GLUOX
          Length = 161

 Score =  129 bits (325), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 59/124 (47%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           R   +Y ++ GGC GC +EI +     F  E+ G   V  P  AD LL TGAVTR     
Sbjct: 35  RPIGLYVLEAGGCEGCFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVCAEM 94

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
             R W++ P  +  I+ GAC   GG F   Y   GG + + PV   I GCPP+P   L  
Sbjct: 95  VDRVWRAMPPGRSLIAVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSPDDILRA 154

Query: 156 FAMA 159
               
Sbjct: 155 LQEL 158


>UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LSU0_ACIC1
          Length = 269

 Score =  126 bits (317), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 21/182 (11%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKR---SAYVYRVDCGGCNGCEIEIFATLS 60
               RD   +P     D+++A+++A L ++ +    S +V  VD G     E E+ A L+
Sbjct: 88  PAAHRDLLVVPALPETDDALAAVRAELARRTRLLRRSIHVRHVDAGSDGADEWEVLALLN 147

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           P++D  R GI    SPRHAD+LL TG  +R M +P  R  Q+AP P + I+ G    SGG
Sbjct: 148 PVYDIHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIAAGTDAISGG 207

Query: 121 IFHDLYCVWGGTDKIV------------------PVDVYIPGCPPTPAATLYGFAMALGL 162
           + H  Y   GG   ++                   VD+++PG PPTP A L+   +A+G 
Sbjct: 208 LVHPTYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPTPFALLHALLLAMGR 267

Query: 163 LE 164
           L+
Sbjct: 268 LQ 269


>UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           n=1 Tax=Taeniopygia guttata RepID=UPI000194DF39
          Length = 183

 Score =  124 bits (311), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 45/171 (26%)

Query: 2   SNLLGPRDANGIP----VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFA 57
           S++   + +  +P    VP +  E + +    L+   +RS  ++ +  G    C +E+  
Sbjct: 47  SSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMH 104

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
             +P +D +RFG+    SPR AD+++  G +T  M     +       P           
Sbjct: 105 MAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRK------KP---------PC 149

Query: 118 SGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
            G                         CPPT  A LYG       ++++  
Sbjct: 150 RG------------------------RCPPTAEALLYGILQLQRKIKREKR 176


>UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax=Leptospira biflexa
           serovar Patoc RepID=B0SCU6_LEPBA
          Length = 273

 Score =  120 bits (301), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           KR      V  GG N  E E+ A+ + +FD+ER GI+ V SP+HAD ++F+G ++  M  
Sbjct: 136 KRGFLYREVAAGGNNTVESELNASFNSVFDSEREGIRCVASPKHADTIVFSGPISEQMEG 195

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
           P   AW    +P+  I+ G    SGG+F       G   K    D+YI G PP P   L 
Sbjct: 196 PLQTAWDVLSEPRALIACGTEAVSGGLFPK-----GKIPK--EPDLYISGDPPRPDVILQ 248

Query: 155 GFAMALGL 162
           GF + +G 
Sbjct: 249 GFRLLIGR 256


>UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax=Leptospira
           RepID=Q04P25_LEPBJ
          Length = 273

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRS-----AYVYRVDCGGCNGCEIEIFATLSP 61
            R+A  +     + +    M+   +K+ +++          V   G N  E EI A+ + 
Sbjct: 100 DREALKVTYTNGMPDEKPEMETEEVKRFRKTTKKTGFQFREVAASGNNTTEAEINASFNA 159

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
           LFD+E   I+VV SP+HAD L+++G V   M  P   AW++ P PK  ++ G+   SGG+
Sbjct: 160 LFDSEASKIRVVASPKHADALVYSGPVGPNMEEPLNTAWETMPSPKALVACGSEAVSGGL 219

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           F       G   K    D++I G PP P   +  F   +G  E    A 
Sbjct: 220 FK-----LGKLPK--EPDLFIGGDPPRPDVIISAFRYLMGTRELSFTAE 261


>UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanocaldococcus
           RepID=Y726_METJA
          Length = 216

 Score =  113 bits (284), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 8/168 (4%)

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG-------T 132
           DI+L  GAV         +  +   + K+ I+ G+C  SGG    L  +  G        
Sbjct: 26  DIVLVGGAVNLDDEEEVKKIMEIRKNSKVLIAVGSCAVSGGFQRMLIGLENGFPQRFVRI 85

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLR 192
             +V VD  I GCPP            +   ++ + +    +  E  A     D    + 
Sbjct: 86  GDVVKVDYAIIGCPPDEEEVERIVKAVIEKDKEIVDSYLILKPYEVIAGKPIIDAYMKVN 145

Query: 193 VKVDREARRLAGYRYGRQIADDYLTQLGQ-GEEQVARWLEAENDPRLN 239
             +    + L      + I D++ T  G    +  A  L  +  P++N
Sbjct: 146 DVLLTSNKELCLGCDDKPINDEFCTGCGTCVAKCPANALTIDEKPKVN 193


>UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2H7B9_CHAGB
          Length = 189

 Score =  112 bits (281), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 53/150 (35%), Gaps = 48/150 (32%)

Query: 15  VPMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
            P +V E   S    L+   ++ S +       G   C IE+     P +D +R GI   
Sbjct: 74  RPNSVTEYALSTLDGLINWARQGSLWPMSF---GLACCAIEMMHLSMPRYDNDRQGIIFR 130

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR +D+++  G                                            G D
Sbjct: 131 ASPRQSDVMIVAG--------------------------------------------GVD 146

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
           +IVPVD+Y+PGCPPT  A  YG       +
Sbjct: 147 RIVPVDIYVPGCPPTAEALQYGIFQLQKKM 176


>UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, putative n=1
           Tax=Ricinus communis RepID=B9SD17_RICCO
          Length = 188

 Score =  109 bits (272), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPA 150
           M    +R ++  P+PK  I+ GAC  +GG+F  D Y    G DK++PVD Y+ GCPP P 
Sbjct: 1   MAPSLVRLYEQIPEPKYVIAMGACTITGGMFSTDSYSTIRGVDKLIPVDAYLSGCPPKPE 60

Query: 151 ATLYGFAMALGLLEQKIHARGPGELDEQP 179
           A +         L ++I+        E  
Sbjct: 61  AVIDAITKLRKKLSREIYEDRIRSQPENR 89


>UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteriaceae
           RepID=B2N3C8_ECOLX
          Length = 124

 Score =  107 bits (268), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           +DV+IPGCPPTPAAT++GFA+ALGLL+QKIHA    +      + L   +    R+ ++R
Sbjct: 6   IDVWIPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIER 65

Query: 198 EARRLAGYRYGRQIADDYLTQLGQGE--EQVARWLEAENDPRLNEIVSHLNHVVE 250
           EARRLAGYR GR+I D  L  L       +V  WL   +DPRLN IV  L  V+ 
Sbjct: 66  EARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLRDADDPRLNSIVQQLFRVLR 120


>UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=Thermococcus
           onnurineus NA1 RepID=B6YTV9_THEON
          Length = 225

 Score =  100 bits (250), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 49/145 (33%), Gaps = 13/145 (8%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFTGAVTRAM 92
              V  VD GGC GC + I      L D     I  +          D+ + TG      
Sbjct: 3   KLKVLHVDVGGCEGCNVSIIRAYPKLMDLIELDISYLRKDECKLDEYDVAIITGGACMNE 62

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIF---------HDLYCVWGGTDKIVPVDVYIP 143
                   +        +++G+C    GI             +  +   + ++ VD  IP
Sbjct: 63  PRILEELKEIREKAHTVVAFGSCATFSGILRFCRGGQEPRPDHRNFQPINSVIKVDYSIP 122

Query: 144 GCPPTPAATLYGFAMALGLLEQKIH 168
           GCPPTP      F   +   E+++ 
Sbjct: 123 GCPPTPQMLQSFFKFYINGDERRLR 147


>UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n=1 Tax=Thermococcus
           gammatolerans EJ3 RepID=C5A2R7_THEGJ
          Length = 229

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 13/145 (8%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFTGAVTRAM 92
              V  VD  GC GC + I      L +     I  +          D+ L TG      
Sbjct: 6   KLKVLHVDFAGCEGCNVSIIRAYPKLMNEIDLDISYLRDGSCQYGEYDVALITGGACMNE 65

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIF---------HDLYCVWGGTDKIVPVDVYIP 143
                   +     ++ +++G+C + GGI             +  +   + ++PVD  IP
Sbjct: 66  PRILEELKEIREKARVVVAFGSCASLGGILRFARGGQEPRPDHRNFQPINSVIPVDYSIP 125

Query: 144 GCPPTPAATLYGFAMALGLLEQKIH 168
           GCPPTP      F   +   E ++ 
Sbjct: 126 GCPPTPQMLQSFFKFFMAGNESRLR 150


>UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax=Euryarchaeota
           RepID=FRHG_METBF
          Length = 259

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 54/161 (33%), Gaps = 17/161 (10%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLF----DAERFGIKVV-PSPRH---ADILLFTGA 87
               +  V   GC GC + +      L     D       +     RH    D+ L  G+
Sbjct: 3   NKIKIGHVHMSGCTGCLVSLADNNLGLIKILDDYADLVYCLTLADVRHIPEMDVALVEGS 62

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL---------YCVWGGTDKIVPV 138
           V            ++    KI ++ G+C   G I             +  +     ++ V
Sbjct: 63  VCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHESYLPIGDLIDV 122

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
           DVYIPGCPP+P        MA  LLE     +       +P
Sbjct: 123 DVYIPGCPPSPELIRNVAVMAYLLLEGNEEQKELAGKYLKP 163


>UniRef50_C1GND6 NADH-ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Paracoccidioides brasiliensis Pb01
           RepID=C1GND6_PARBA
          Length = 159

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATL 59
           +S L   R+A  I   +++ E        ++   +  S +       G   C +E+ A  
Sbjct: 16  VSTLGVIREAERISSLISLQEEKNGSIDKVVNWAREGSLWPLSF---GLACCNMEMMAVS 72

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS 102
            P +D +R G     SPR +D+++   AVT+            
Sbjct: 73  MPRYDQDRLGTIFRASPRQSDVIIVADAVTKQDGPRLAVTRGQ 115


>UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota RepID=A6UVU9_META3
          Length = 227

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 20/140 (14%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIK------VVPSPRH---ADILLFTGAVTR 90
           V  V    C GC + +  T   L D    G         +   R    ADI+L  G+V  
Sbjct: 4   VAHVQLSSCCGCLVSLTDTYEKLLDV--LGAIDLVYSQTIADAREIPEADIILVEGSVCL 61

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFH---------DLYCVWGGTDKIVPVDVY 141
                   A       KI ++ GAC  +GGI            ++  +    ++V  D+ 
Sbjct: 62  DDHHAMEIAQDVGKKAKILVALGACAATGGITRFCRGGQMSKPIHSSFSPITEVVKCDLA 121

Query: 142 IPGCPPTPAATLYGFAMALG 161
           IPGCPP+P   +     A+ 
Sbjct: 122 IPGCPPSPEIIVGLITAAIE 141


>UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13
           Tax=Methanococcales RepID=VHUG_METJA
          Length = 288

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 66/234 (28%), Gaps = 45/234 (19%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD----AERFGIKVVPSPRHA----DILLFTGAVT 89
             V  +   GC+GC I +      L +     E     ++  P+      D+ L  G + 
Sbjct: 6   VKVGMIQLCGCSGCHISLLDLHDKLLEVLPNLEIVYAPIIADPKEIPEGIDVFLVEGGIR 65

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLYCV--------- 128
                      +     KI I++G C   GGI             + +Y           
Sbjct: 66  NEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKEELLNYVYSTDSTENKGEI 123

Query: 129 -----------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
                             + VD  IPGCPPTP          L   E K+  +   +   
Sbjct: 124 PSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIALLNGEEPKLPTKIVCDECP 183

Query: 178 QPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLE 231
           +  E +     +  +   +                  + T+ G G +  +  + 
Sbjct: 184 RKKENV---FPETFKRTHEGRPDPERCLFEQGYTCLGFATRAGCGAKCPSAGVP 234


>UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
           RepID=UPI0000E81815
          Length = 187

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 54/167 (32%)

Query: 7   PRDANGIP----VPMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSP 61
           P+ +  +P    VP +  E I +    L+   +R S +   +    C             
Sbjct: 63  PKSSAVVPKKSYVPTSRGEYIVTKLDDLINWARRTSLWPSMLAQQNC------------- 109

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
                                         +    L    + P+         C N GG 
Sbjct: 110 -----------------------------HLHPALLGLSAAEPEDG-------CANGGGY 133

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       ++++  
Sbjct: 134 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRERK 180


>UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subunit n=2
           Tax=Methanopyrus kandleri RepID=Q8TYW2_METKA
          Length = 305

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 46/192 (23%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV---------VPSPRHADILLFTGAVTR 90
           +       C GC + +      L D     I++            P H ++ +  G++  
Sbjct: 6   IATAQLSSCVGCHVSLLDLHEKLLDLLEDAIEIEYCYVLVDQKEIPEHVNVAVIEGSI-- 63

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGG----------------IFHDLYCV------ 128
                   A +      I ++ G C   GG                +F +          
Sbjct: 64  RNEEDLEVAEELREAADIVVAVGTCACYGGVHGLANLYQLDDILEWVFKETPTTDDEGET 123

Query: 129 -----------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
                           +++ VD  +PGCPP P +        L   E ++        +E
Sbjct: 124 PEEVVPELFGYVRPLPEVIDVDYMLPGCPPKPESIAEVITAILEDREPELPTTNL--CEE 181

Query: 178 QPAEILHGDMVQ 189
            P E     + +
Sbjct: 182 CPREKEDIPIEE 193


>UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2 Tax=Roseiflexus
           RepID=A5UWN9_ROSS1
          Length = 127

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPAL 97
             VYR + G C GC++E+ A L+         I    +P  AD+LL TG +T   +   +
Sbjct: 2   IQVYRFNTGSCGGCDLEVIAALAAA-----ADIDWAATPHEADVLLLTGPLTTDTKKAFM 56

Query: 98  RAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP--GCPPTPAATLYG 155
              Q        I+ G C   G  F       GG   I  + V++   GCPPTP   +  
Sbjct: 57  ALLQELDHRAPIIAVGRCAIDGHPFG-----RGGVAVIPNLTVHLSLDGCPPTPTQIVEA 111

Query: 156 FAMALGLLEQKIHARG 171
                   E       
Sbjct: 112 IRTIAMDREDGAAGER 127


>UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLU1_SYNFM
          Length = 184

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 47/168 (27%), Gaps = 42/168 (25%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF-GIKVVPS------PRHADILLFTG 86
                 +     GGC GC + +      L D      I   P       P   D+ L  G
Sbjct: 5   ASNKVRLATAWFGGCAGCHMSLLDLDERLIDVVGLVDIVYSPVADIKVFPEGVDVTLVEG 64

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------------------- 121
           A           A +     KI I++G C  +G +                         
Sbjct: 65  ACCN--DENVHLAHEVRERSKIVIAFGDCAVTGNVPSMRNRLDRDQMINSVYFEGPGKPP 122

Query: 122 --------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
                      L        +++PVD+++PGCPP P          L 
Sbjct: 123 PTSVLGHFLPTLIPKVLPLHQVIPVDIFLPGCPPDPERIWAAIVALLK 170


>UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 Tax=Dictyoglomus
           RepID=B5YB68_DICT6
          Length = 180

 Score = 87.4 bits (215), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 55/176 (31%), Gaps = 45/176 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP--------RHADILLFTGAV 88
              V  V C GC+GC +        L +    G+++  +P           DI +  GAV
Sbjct: 3   KIKVASVWCEGCSGCHMSFLDMDERLVELINKGLEINATPITDLKIPDEGTDIGIIEGAV 62

Query: 89  -TRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLYCVWGG 131
            T                 KI ++ G C   GGI                +        G
Sbjct: 63  ATDHHEEEVKMM---RERCKIIVALGDCAVFGGIPTMRNYIPREELLERGYITTESTVDG 119

Query: 132 -----------------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                             ++++ VD+Y+PGCPP+  A  Y     L     K+   
Sbjct: 120 KIPTSPEIGKHLPKTKAVNEVIKVDLYVPGCPPSADAIYYVLKEVLEGRIPKLEGE 175


>UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing
           hydrogenase), gamma subunit n=2 Tax=Euryarchaeota
           RepID=Q0W6J6_UNCMA
          Length = 305

 Score = 86.7 bits (213), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 61/206 (29%), Gaps = 47/206 (22%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLS---PLFDAERFGIKVV-----PSPRHADILLFTGAV 88
              V     G C GCEI +  T     P+ D   F    V       P+ A + + +G V
Sbjct: 3   KVKVAETWIGACAGCEISVLDTHEALLPILDKIEFVYIPVLMDTKHIPK-ATVGIVSGCV 61

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGG---------------------------- 120
                       +   +  I ++ G+C   GG                            
Sbjct: 62  --RNSDNLHELLEMRKNVDILVALGSCACFGGTPGMANLYTPEQLLEEVYVTTKSTKNEI 119

Query: 121 ---IFHDLYCVW----GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP- 172
               + D               V VD  IPGC P PA         LG  E K+  +   
Sbjct: 120 QRHPYMDGLPTLLPDAKPLSDYVKVDAMIPGCGPRPAMIAQAILSLLGAAEYKLSTKSVC 179

Query: 173 GELDEQPAEILHGDMVQPLRVKVDRE 198
            E   + +E     +++P    +D +
Sbjct: 180 DECAREKSERNLKKILRPFEGTIDEK 205


>UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria RepID=A1SU83_PSYIN
          Length = 433

 Score = 86.3 bits (212), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 62/196 (31%), Gaps = 57/196 (29%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPSP--------RHADILL 83
           K K+   +      GC GC +        L +  ER  +++  SP           D+ L
Sbjct: 253 KPKKKLKLATCSLAGCFGCHMSFLDMDERLIELLER--VELSRSPLNDIKTCAPDCDLGL 310

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI---------------------- 121
             GAV        LR +      KI I+ G+C  +GG+                      
Sbjct: 311 IEGAVCNTENIAVLRHF--RESCKIIIAVGSCAINGGVPSLRNNIDVKDCLDEAYLNGIG 368

Query: 122 -----------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                         L        +++ VD ++PGCPP   A        L          
Sbjct: 369 LVNPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPADAFWKILNDLLD--------- 419

Query: 171 GPGELDEQPAEILHGD 186
             G+  E P ++LH D
Sbjct: 420 --GKEPELPYDLLHFD 433


>UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=Methanococcus
           RepID=FRHG_METVO
          Length = 243

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 50/158 (31%), Gaps = 36/158 (22%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFG------------------------IKVV 73
             +  +   GC GC I +  T   L D    G                        +   
Sbjct: 2   VKIAHIHMSGCTGCLISLTDTYEKLLDI--LGSVELVYALTLTGEKTEITETDDKILIER 59

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPK-ICISYGACGNSGGIFH--------- 123
             P   DI L  G+V             +  + K   ++ GAC  SGG+           
Sbjct: 60  DIPGGIDIALVEGSVCLDDHHSMDDILTTRKNSKKSLVALGACAASGGVTRFRRVGQMSQ 119

Query: 124 DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
             +  +     ++ VD+ +PGCPP+  + +     AL 
Sbjct: 120 PSHASFVPIGDVIKVDLALPGCPPSTESIVKLLTAALE 157


>UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=4
           Tax=Proteobacteria RepID=Q21RP8_RHOFD
          Length = 188

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 51/166 (30%), Gaps = 44/166 (26%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP----RH---ADILLFTGAV 88
           R   V  V   GC GC +        LFD     I+   SP    +     DI L  G +
Sbjct: 11  RKLKVATVSLAGCFGCHMSFLDIDERLFDLIEH-IEFDRSPLTDIKQVGACDIGLIEGGL 69

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGG------------IFHDLY---------- 126
                       +     K  ++ GAC  +GG            +  ++Y          
Sbjct: 70  CN--AENVQVLREFRAHCKTLVAVGACAITGGLPAQRNHLDLGQLLTEVYRSRPGLSAGG 127

Query: 127 ------------CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                              ++V VD  +PGCPP+  A  +  +  +
Sbjct: 128 AIPNDPELPLLLNKVHPIREVVHVDYSLPGCPPSADAFWHFLSDLM 173


>UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n=46 Tax=Bacteria
           RepID=Q3M430_ANAVT
          Length = 181

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 49/180 (27%), Gaps = 43/180 (23%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG---IKVVPS----PRHADILLFTGAVT 89
              +  V  GGC+GC +        L D                  P   D++L  GA+ 
Sbjct: 3   RLKLATVWLGGCSGCHMSFLDLDEWLIDLAAQADVVFSPFADIKEYPEGVDVVLVEGAIA 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG------------------------------ 119
                            +I IS+G C  +G                              
Sbjct: 63  N--EEHLTTIKIVRERSQILISFGDCAVTGNVTALRNPLGSAEPVLQRCYIQAVDINPQI 120

Query: 120 ----GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGEL 175
               GI   L         IVPVD+Y+PGCPP+           L      +  R   + 
Sbjct: 121 PQEPGIVPPLLDRVTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQGKTPHLSGREFIKF 180


>UniRef50_Q6A6I9 NADH dehydrogenase subunit n=2 Tax=Propionibacterium acnes
           RepID=Q6A6I9_PROAC
          Length = 132

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 15/120 (12%)

Query: 39  YVYRVDCGGCNGCEIEIFAT---LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
            VY VD      C +E  A     +P+ +    G  +        ++L +G VT  +   
Sbjct: 11  SVYVVDL-ALACCGVESGAAVLANAPVREEIPDGAPI--------VVLVSGTVTTGLAPV 61

Query: 96  ALRAWQS--APDPKICISYGACGNSGGIFHDLYCVWGGT-DKIVPVDVYIPGCPPTPAAT 152
                       P   +++GAC  +GG + D   V  G  D  V  D +IPGCPP P   
Sbjct: 62  VSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPPGPETL 121


>UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=6 Tax=Bacteria
           RepID=B8G3U7_CHLAD
          Length = 177

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 53/172 (30%), Gaps = 43/172 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAER---FGIKVVPS----PRHADILLFTGAVT 89
              +  +  GGC+GC + +      L +           +      P H D+ L  GA+ 
Sbjct: 3   RIRIATIWLGGCSGCHMSLLDLDEWLIELAAQADLVYSPIADVKRFPSHVDVTLIEGAIA 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG------------------------------ 119
                    A  +  + KI +S+G C  SG                              
Sbjct: 63  NN--EHLELAHIARRNSKIIVSFGDCAVSGNVTALRNPLGSPEQLLQQVYIEHSDPRGKI 120

Query: 120 ----GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
               GI   L        +++PVD Y+ GCPP+           L   + ++
Sbjct: 121 PHEPGIVPVLLDKVMPVHQVIPVDYYLSGCPPSAPRIRALLEALLTGRKPEV 172


>UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Tax=Bacteria
           RepID=Q2LYD8_SYNAS
          Length = 253

 Score = 78.9 bits (193), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 35/153 (22%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH---------ADI 81
           ++++     V   D   C GC++++      L D    G   V   R           D+
Sbjct: 1   MERMLMKPKVAFFDFACCEGCQLQVANLGEALLDI--LGAIDVVEFREVMSEKWDKNYDV 58

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG----------------IFHDL 125
            +  G++T        R  +      + I+YG+C   GG                ++   
Sbjct: 59  AIVEGSITDEHAE--QRIRKIRDRSAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVYGKD 116

Query: 126 YCVW-----GGTDKIVPVDVYIPGCPP-TPAAT 152
           Y ++         ++V VD +I GCP   P   
Sbjct: 117 YQLFDSKKTRPIHQVVKVDYFINGCPVYHPEVI 149


>UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 Tax=Ixodes
           scapularis RepID=B7QG38_IXOSC
          Length = 162

 Score = 77.0 bits (188), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            + +    +P+  IS G+C N GG +H  Y V  G D+I+PVD+Y+PG
Sbjct: 78  RKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 125


>UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Methanopyrus kandleri RepID=Q8TXX1_METKA
          Length = 238

 Score = 76.3 bits (186), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 52/173 (30%), Gaps = 15/173 (8%)

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH--------DLYC-VW 129
           ADIL   GAV  A      +  ++A      +S G+C  +GG           D Y    
Sbjct: 43  ADILFVEGAVDFADAETLEKLEEAASAVSTVVSLGSCAATGGFERHVIGMRDPDRYHFTV 102

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP--GELDEQPAEILHGDM 187
               K V  D  I GCPPT               E ++       G+      E+     
Sbjct: 103 FPAAKFVETDYAINGCPPTTDVIASFLRALEEENEDELRPYEVLSGDFHGLTPELSAPVT 162

Query: 188 VQ--PLRVKVDREARRLAGYRYGRQI-ADDYLTQLGQ-GEEQVARWLEAENDP 236
               P+   +    + L        I  D +    G       A  +E +  P
Sbjct: 163 GPTVPVEDVLLTSNKDLCLGCDLDVIEKDLFCVGCGTCAASCPAWAIEMDEKP 215


>UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n=7
           Tax=Deltaproteobacteria RepID=A0LP54_SYNFM
          Length = 324

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 70/241 (29%), Gaps = 68/241 (28%)

Query: 46  GGCNGCEIEIFATLSP---------------LFDAERFGIK----VVPSPRHADILLFTG 86
             C GCEI +                     LFD + FG       +  P  ADI + +G
Sbjct: 11  SSCAGCEISMLNMGGLFLELLKEIRIVHMPLLFDHKYFGQAGEENFIGIP-EADIGIVSG 69

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLYCV------ 128
            +          A +     +I ++ G C   GGI            F   Y        
Sbjct: 70  GI--RNEEQLEVALKVRAQCRILVALGTCATHGGIPALMNRYSDEDLFRRYYRTSETTEA 127

Query: 129 WGGTDKIVP--------------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
               +++VP              VDVY+ GCPP P      F   L            G+
Sbjct: 128 AAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPDYLGAMFRTLLD-----------GQ 176

Query: 175 LDEQPAEILHGDMVQPLRVK-VDREARRL--AGYRYGRQIADDYLTQLGQGEEQVARWLE 231
             E P + +          K   ++ RR   +      +   +    L QG   +     
Sbjct: 177 WPEMPTKSVCDTCPTRREGKGNVQKIRRFTRSARFQNEKPLSEMKCLLEQGLLCMGPVTR 236

Query: 232 A 232
           A
Sbjct: 237 A 237


>UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit FrhG n=1
           Tax=Methanobrevibacter ruminantium M1
           RepID=UPI0001C420D3
          Length = 319

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 17/148 (11%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFA----TLSPLFDAER--FGIKVVP--SPRHADIL 82
           ++K+     +  +   GC G  + +        + L D     +G  +V        D+ 
Sbjct: 84  VEKVADKPKIGYIHMSGCTGDGMSLTENYDILSTLLTDMVDIVYGTTLVDLWEMPEMDLA 143

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH---------DLYCVWGGTD 133
           L  G+V            +      +  ++G+C  +G               +  +    
Sbjct: 144 LVEGSVCLQDEHSVKELMEVREKAGLVCAFGSCAMTGCFTRYARGGQLAQPKHESFVPIS 203

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALG 161
            +V VD  IPGCP +P          + 
Sbjct: 204 DLVKVDCAIPGCPASPEIIAKVVVALIN 231


>UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=D2REQ3_ARCPR
          Length = 321

 Score = 73.2 bits (178), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 51/181 (28%), Gaps = 60/181 (33%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKV-------------VPSPRHA-DIL 82
             +  +  GGC GC++ +      L D  E   I                  P  + D+ 
Sbjct: 3   LKLAYLLVGGCGGCDMAVVDLSEKLVDALEHLEIVFWAPTVADVKYKDLEAMPDQSIDLG 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLY---- 126
           L +G V        ++  +     KI +++G C   GGI            F + Y    
Sbjct: 63  LISGMVRNKENEHLVKVMRQ--KCKIIVAFGICAALGGIPGMANMHKNEELFENAYIKSP 120

Query: 127 ---------------------------CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
                                            D+++ VD Y+ GCPP            
Sbjct: 121 STDNPNNVIPQPVSKEGEFELTLPEFLDRVKPIDEVIEVDYYVGGCPPHHDHVAKVVEAV 180

Query: 160 L 160
           +
Sbjct: 181 I 181


>UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small subunit n=5
           Tax=Dehalococcoides RepID=D2BHA4_DEHSV
          Length = 312

 Score = 73.2 bits (178), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 75/258 (29%), Gaps = 59/258 (22%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDA--------------------ERFGIKVVPSPRHA 79
           V       C GCE+ I     PL D                     +  GIK    P  A
Sbjct: 4   VAEEWFAVCGGCELSILDIGEPLLDVLPNLKIVHMPVLMDHKLLGQKGDGIKY-EIP-EA 61

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLYC 127
           D+ + TG +          A +     K+ ++ G C   GGI               ++ 
Sbjct: 62  DLGIITGGI--RNEENRELALEMRKKCKLIVALGTCACFGGIPALANLSTTEDMLKQVFS 119

Query: 128 VWGG---------------------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
              G                      D+I+ VD+++PGCPPTPA  +      L      
Sbjct: 120 KEKGTDPASPPGDKSLPKMLDRVYAVDEIITVDIHLPGCPPTPAHIVELLTAVLAGKTFA 179

Query: 167 IHARGPGELDEQPAEILH--GDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEE 224
           +  R   +      E     G + +PL+       R         Q           G  
Sbjct: 180 LPERSVCDTCPTIREKQSTGGSIKRPLQNAQFTPGRYDNMRCLNEQGLFCLGPVTKAGCN 239

Query: 225 QVARWLEAENDPRLNEIV 242
           ++     +E  PR  +  
Sbjct: 240 RILGADPSEEIPRCIKAY 257


>UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax=Euryarchaeota
           RepID=MVHG_METTH
          Length = 308

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 58/203 (28%), Gaps = 49/203 (24%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP----------RHADILL 83
           +     +  +  GGC+GC + I      + D          SP             D+++
Sbjct: 1   MAEKIKIGTMWLGGCSGCHLSIADFHEKIIDVMEH-ADFEFSPVLMDTKYDEIPELDVVI 59

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-----FHDLYCV---------- 128
             G +          A +     K  ISYG C   GGI       D   V          
Sbjct: 60  IEGGIVN--DENREFAEELREKAKFVISYGTCAVYGGIPGLRNLWDKDEVIEEAYINSIT 117

Query: 129 -------------------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
                                   +++ VD  +PGCPP            L   E ++  
Sbjct: 118 TPNEEGVIPSEDVPHLEGRVKPLGEVIDVDFEVPGCPPRSDVAAEAVMALLTGEEIELPE 177

Query: 170 RGPGE--LDEQPAEILHGDMVQP 190
               E    E+P E L  D ++ 
Sbjct: 178 TNLCEVCPREKPPEGLAMDFIKR 200


>UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subunit, FrhG n=3
           Tax=Methanobacteriaceae RepID=A5UM99_METS3
          Length = 276

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 12  GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIF-------ATLSPLFD 64
            I     V+E+ A +  +  +       +  +   GC G  + +          L+ + D
Sbjct: 22  KIESAPEVEETAAPVAETKQETATNKPRIGYIHLSGCTGDGMSLTENYDILDVVLTEMVD 81

Query: 65  AERFGIKVVP--SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI- 121
              +G  +V        D+ L  G+V            ++     +  ++G+C  +G   
Sbjct: 82  IV-YGQTLVDLWEMPEMDLCLIEGSVCLQDEHSVHELLEAREKSALICAFGSCALNGCFT 140

Query: 122 --------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
                       +  +     +V VDV +PGCP  P            
Sbjct: 141 TYARGGQQAQPKHESFLPISSLVKVDVALPGCPVAPEMIAKTVVALCN 188


>UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria RepID=Q59113_9BACT
          Length = 179

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 53/175 (30%), Gaps = 44/175 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP-------RHADILLFTGAVT 89
            A V       C GC +        L D  +  ++++ SP        + D+ + +G + 
Sbjct: 3   KAKVATFWLEACAGCHMSFLDLDERLIDLFQ-NVEILFSPIVDAKDIPNIDVGVLSGGLG 61

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLYCVWG--- 130
                    A +     K  +++G C   GGI                + +         
Sbjct: 62  N--VEEVELAKKMRERCKYLVAWGDCAVFGGINCMRNFIPKDVVLREGYIETASTVNPQG 119

Query: 131 ---------------GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                            D  V VDVY+PGCPP      Y F   L     K+ + 
Sbjct: 120 IVPSEDIPELLPRALPIDYEVKVDVYVPGCPPDADTIYYVFKELLAGRVPKVPSE 174


>UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=10
           Tax=Chlorobiaceae RepID=B4SFA2_PELPB
          Length = 258

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 27/150 (18%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVP--SPRH---ADILLFTGAVTR 90
              +   D   C GC++++    S L D      I+     S       DI L  G+++R
Sbjct: 14  RLKIASFDFTCCEGCQLQLANRESTLADFLNLLDIRNFRELSSEQHDDYDIALIEGSISR 73

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTD--------------- 133
                  R  +     KI +++G C   GGI    + +      D               
Sbjct: 74  QDE--VERLLKIRQQAKILVAFGTCACFGGINSLKNRFPAREMIDAVYPGMPIETLPVRK 131

Query: 134 --KIVPVDVYIPGCPPTPAATLYGFAMALG 161
              +V VD+ IPGCP             + 
Sbjct: 132 ISDVVKVDLSIPGCPVDKREVERIVVSLVR 161


>UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomiragia
           RepID=C6YT65_9GAMM
          Length = 268

 Score = 70.1 bits (170), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 50/174 (28%), Gaps = 38/174 (21%)

Query: 28  ASLLKKIKRSAYVYRVDCGGCNGCEIEIFA------TLSPLFDAERF-GIKVVPSPRHAD 80
              LK +     +       C+GC++ +        TL+ + D   F     +      D
Sbjct: 4   QDKLKNLAPRPKIAVHKFSSCDGCQLALINDAVSLLTLAEMVDIVHFAEAGPLDEFADVD 63

Query: 81  ILLFTGAV-TRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------------ 121
           I    G+V T        +        K  I+ GAC  +GGI                  
Sbjct: 64  IAFIEGSVNTHHDIPRLQKI---REKAKYVIAIGACAVAGGIQALRNYTNAAELLEWQKA 120

Query: 122 ---------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
                      +         + V VD  I GCP T    L      L  +E +
Sbjct: 121 VYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQILKAIRQLLFGVEPE 174


>UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Nautilia
           profundicola AmH RepID=B9L8N0_NAUPA
          Length = 288

 Score = 70.1 bits (170), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 52/161 (32%), Gaps = 27/161 (16%)

Query: 37  SAYVYRVDCGGCNGCEIEIFAT--LSPLFDAERFGIKVVP-----SPRHADILLFTGAVT 89
              V  +D   C GC         +S LF+   F    +        +  D+L+  GA+ 
Sbjct: 4   KLNVIWIDAVTCYGCTHSFLNYKEISSLFEKVNFEYHPLFLSNDLEIKQCDLLIVEGAL- 62

Query: 90  RAMRSPALRAWQSAP-----DPKICISYGACGNSGGIFHDL--YCVWGGT------DKIV 136
           +        +            K  ++ G C   GG+F +   Y            DKI+
Sbjct: 63  KNNYPRLGYSLNELISKLFFKAKKVLALGTCAVYGGMFGEGLMYNKEQKGHYYKCRDKII 122

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
                +PGCPP P      F + +    +KI         +
Sbjct: 123 ----NLPGCPPHPDWI--AFVLDMISENKKIALDDLNRPKD 157


>UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermococcus sibiricus MM
           739 RepID=C6A155_THESM
          Length = 267

 Score = 70.1 bits (170), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 30/158 (18%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-----VPSP--RHADILL 83
           ++++     +       C GC+++       L   ++  I+        S   +  DI  
Sbjct: 4   VRRMSEKVKIGFYALTSCYGCQLQFAMMDEVLQLLDKANIECWFMLERGSDEDKEVDIAF 63

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLYC---- 127
             G+V+           +     KI I+ G+C   GG+            +  +Y     
Sbjct: 64  IEGSVSTQ--EEVELVKKIREKAKIVIAVGSCAVHGGVQSWDKDKEFNELWKTVYGDAHV 121

Query: 128 -----VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                +    +K + VD  + GCPP     LY     L
Sbjct: 122 KFEPKMAEPVEKYIKVDYKLYGCPPEKKDFLYALGTLL 159


>UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermococcaceae
           RepID=B6YSK0_THEON
          Length = 246

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 43/160 (26%), Gaps = 29/160 (18%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP-------RHADILLFTGAVT 89
              +   +   C GC + I      LFD   F                H D+ L TG V+
Sbjct: 4   KLKLAVFELTDCGGCALNILFLYEKLFDLLEFYEITEFHMATSLSEGSHYDVALVTGTVS 63

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG---------------GIFHDLYCVWGGTD- 133
                  L+  ++       I+ G C   G                ++ D        D 
Sbjct: 64  SQRDLALLK--EARNHSDYLIALGTCATHGSVQASVEGSIREKLKRVYGDEGNPMRALDS 121

Query: 134 ----KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
               + V VD  +PGCP                +E     
Sbjct: 122 KPVVEYVAVDFALPGCPYDKNEVYQVLMDIAKGIEPVKKD 161


>UniRef50_C7J5D7 Os07g0116900 protein n=3 Tax=Oryza sativa RepID=C7J5D7_ORYSJ
          Length = 114

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 48  CNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRA 99
              C +E+    +  +D +RF +   PSPR +D ++  G +T  M     + 
Sbjct: 58  LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPALGKT 109


>UniRef50_A9B2V8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Herpetosiphon aurantiacus ATCC 23779
           RepID=A9B2V8_HERA2
          Length = 124

 Score = 68.5 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 13/132 (9%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPAL 97
             VY ++ G      IE+      +       +    +P HADI + TG +   +R    
Sbjct: 2   IAVYHLNAGSTG---IEVRILAEAI--RSARNLTWAATPAHADIFVLTGPIPLLLRPALS 56

Query: 98  RAW-QSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI--VPVDVYIPGCPPTPAATLY 154
             W     D    I+ G     G  F       GG  ++  + V   I G PPT AA   
Sbjct: 57  NVWRDFIADRAPLIALGRASIDGHPFG-----RGGLAELPEIQVAAKIDGDPPTVAAIQA 111

Query: 155 GFAMALGLLEQK 166
           G   AL     K
Sbjct: 112 GIVQALNARTAK 123


>UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silvestris BL2
           RepID=B8ERX2_METSB
          Length = 190

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 46/165 (27%), Gaps = 43/165 (26%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP---LFDAERFGIKVVPS----PRHADILLFTGAVT 89
              +      GC GC + +         L D     +          R  D+    G  +
Sbjct: 13  KPRLATCSLTGCFGCHMSLLDIDERILELIDLVDLDVSPFDDKKSFDRPVDVGFVEGGCS 72

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLYCVWGGT- 132
                      +     +I +S GAC  +GG+                +     + GG  
Sbjct: 73  N--EYNVKELIEFRKHCRILVSVGACAINGGVPAMRNTVGLRECLEAVYLHGVSLEGGGM 130

Query: 133 -----------------DKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                             ++V +D ++PGCPP+  A        L
Sbjct: 131 IPNDEDLPLLLDRVYPSHEVVKIDYFLPGCPPSGDAIWAALKALL 175


>UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=Methanocella
           paludicola SANAE RepID=D1Z1F3_METPS
          Length = 235

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 16/141 (11%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPSPRHA------DILLFTGAVT 89
                 V    C+GCEI        L D  +   I+ +   + A      DI+   GA  
Sbjct: 3   KPKFAYVHLAACSGCEISFLDNFERLLDMMDMVDIEYMTLIKDATDIPKVDIVFVDGAAC 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGN---------SGGIFHDLYCVWGGTDKIVPVDV 140
                      ++  +    +++G C +          G +    +  +    ++V VD 
Sbjct: 63  LQSEDAVETLKKARENATYLVAWGGCSSTATINNFSRGGQLPQPQHESFPPIKRLVKVDA 122

Query: 141 YIPGCPPTPAATLYGFAMALG 161
            +PG PP P          + 
Sbjct: 123 SVPGSPPGPGMAYNVIRAFVE 143


>UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gamma (VhuG) n=1
           Tax=Archaeoglobus fulgidus RepID=O28898_ARCFU
          Length = 293

 Score = 65.8 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 43/160 (26%), Gaps = 42/160 (26%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP----------SPRHADILLFTGAVT 89
           V      GC+GC + +      + D  R  +               P   D     G + 
Sbjct: 4   VAFYIAHGCSGCTMSMLDLGERMNDF-RMRVAWAAPTLGDGKYDRIP-EVDYAFIEGGIG 61

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIF--------------------------- 122
                      +     +  +++G C + GGI                            
Sbjct: 62  L--SEHVEIVRELREKSETLVAFGICASCGGIMGLANLHSKEEILEDVFGSAKSSVGDLR 119

Query: 123 -HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
             ++       D +V VD YI GCPPTP      F     
Sbjct: 120 IPEMLEFVKPLDSVVEVDCYIGGCPPTPEQIYNAFKAIFE 159


>UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=uncultured methanogenic archaeon RC-I
           RepID=Q0W2X8_UNCMA
          Length = 232

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 18/142 (12%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKV-------VPSPRHADILLFTGAV 88
                 V    C+GCEI        + D  +   I            P+  D+L   GA 
Sbjct: 3   KPKFAYVHLAACSGCEISFLDNFERVLDMMDMVDIDYMTLIADATEIPK-VDLLFVDGAA 61

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGN---------SGGIFHDLYCVWGGTDKIVPVD 139
               +       ++  +    +++G C +          G      +  +    ++V VD
Sbjct: 62  CLQSKESVESLKKARENTGFLVAWGGCSSTATINNFSRGGQSPQPQHESFPQISRLVKVD 121

Query: 140 VYIPGCPPTPAATLYGFAMALG 161
            ++PG PP P          + 
Sbjct: 122 AFVPGSPPGPEMAYNVIRAFVE 143


>UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NPL1_HALUD
          Length = 266

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 47/161 (29%), Gaps = 30/161 (18%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAE------RFGIKVVPSPRHADILLFTGAVTR 90
              V   D  GC G ++++      L D         F   +       +I    G V  
Sbjct: 6   KPRVAFFDFTGCEGDQLQVINLEDRLLDLVEVVEVVSFREAMTEHSDEYEIAFVEGGVAT 65

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHD------LYCV 128
           A      R      +  + ++ G+C   GGI                + +       Y +
Sbjct: 66  AHDE--RRLTDIRDNADVVVALGSCAAFGGINALRNHQDFETVKERVYGEDADSITSYPI 123

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
               + ++ V+  IPGCP      L      +   E  I  
Sbjct: 124 ARPIEDVIEVEYEIPGCPIDREEFLGAVTALVNGAEPSIPN 164


>UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Desulfohalobium retbaense DSM 5692
           RepID=C8X546_DESRD
          Length = 334

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 76/255 (29%), Gaps = 68/255 (26%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG--------IKVVPSPRHA------ 79
           + R   +     G C GC++ +  T   L +             +    S   A      
Sbjct: 1   MSRRMSIAMNWAGACGGCDVSLLDTQGKLLELTAVADVVYWPVALDYKRSDLEALPEKSV 60

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG------------IFHDLYC 127
           DI LF G V       A  A +     ++ ++YGAC   GG            IF   Y 
Sbjct: 61  DIGLFNGVV--RTSEQAEDARRLRERCRVLVAYGACACHGGIPGLANQSDREEIFRVAYQ 118

Query: 128 -------------------------------VWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
                                                ++V VD ++PGCPPTP   L   
Sbjct: 119 DTVSTDNPDQIRPQQRTPVPGGEVTLPAFHDSVRALHQVVDVDYFLPGCPPTPERILD-- 176

Query: 157 AMALGLLEQKIHARG--PGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADD 214
              LG+++         P      P   L  +     R +  R  R    YR    +AD 
Sbjct: 177 --LLGVVQAYNAGDDLPPAGSILAPEATLCQECP---RAETRRAGRMPRLYRPHEIVADP 231

Query: 215 YLTQLGQGEEQVARW 229
               L QG   +  +
Sbjct: 232 ETCFLEQGVICMGPF 246


>UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Coriobacteriaceae
           RepID=C7MNR7_CRYCD
          Length = 439

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 27/154 (17%)

Query: 81  ILLFTGAVTRAMRSPALRA---------WQSAPDPKICISYGACGNSGGIFHDLYCVWG- 130
           IL++ GAV       ALR           ++AP     ++ G+C  +GG         G 
Sbjct: 125 ILIYEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAGA 184

Query: 131 -GTDKIVP------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEIL 183
            G +K +         V IPGCP  P   +      + ++ +        +      E +
Sbjct: 185 VGVEKFLKESGINVPVVNIPGCPANPEWLVAVLVDVV-MMNKLPALDYENKPALIFDETI 243

Query: 184 HGDMVQPLRVKV---------DREARRLAGYRYG 208
           H +  +    +          + EA+    Y  G
Sbjct: 244 HDNCERRGHFENGEFVYQFGSEEEAKNYCLYAMG 277


>UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YFX1_THEYD
          Length = 318

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 50/182 (27%), Gaps = 60/182 (32%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAE-RFGIKV-------------VPSPRHA-DI 81
              +     GGC GC+I +      L D      I                  P  + D+
Sbjct: 3   KPKLAYYLAGGCGGCDIAVVDISEMLVDVALAVDIVFWAPTVADVKYKDLEAMPDGSIDV 62

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDL 125
            LFTG V  +      +        K+ I++G C   GGI                + + 
Sbjct: 63  GLFTGNVRNSEHEHIAKVL--RNKCKVLIAFGICAACGGIKGLVNLHTTDELLDKAYVNT 120

Query: 126 YCV---------------------------WGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
           +                                 D++V VD YI GCPP        F  
Sbjct: 121 FSTDNPNKELPQTTCVVDGKYELTLPTLMYARPLDEVVKVDYYIGGCPPHYEHVKAAFTA 180

Query: 159 AL 160
            L
Sbjct: 181 LL 182


>UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NU23_HALUD
          Length = 191

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 49/174 (28%), Gaps = 45/174 (25%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS--------PRHADILLFTGAVTRA 91
           V  V  GGC+GC +E       L D     + +V S           AD+ +  G VT  
Sbjct: 17  VATVCLGGCSGCHMEFLNVDHGLVDLVE-EVDIVASHMIVDEKGVPEADVGIAEGVVTNE 75

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGI----------------------------FH 123
                        +    +++G C    GI                            F 
Sbjct: 76  ENVEVAEEL--RENCDTVVAWGDCAALRGIMSLRNYQDRDEMLEETFMGEADDESEVPFG 133

Query: 124 DLYCV------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           D   V          D+ + VDVY+PGCPP                  +I    
Sbjct: 134 DDEGVPKLLEDARPLDEYIDVDVYVPGCPPDAEVMKESLEALARGETPEIEGDK 187


>UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Candidatus
           Desulforudis audaxviator MP104C RepID=B1I576_DESAP
          Length = 317

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 50/177 (28%), Gaps = 59/177 (33%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAER-FGIKVVP---SPRHADI----------L 82
              +       C GC++ I      + D      I   P     ++AD+           
Sbjct: 3   KLKLASYWAAACGGCDVAILDIHEKIVDVAAVADIVFWPIAVDFKYADVEGYEDGFIDVC 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI--------------------- 121
           LF GA+  +      +        K+ +++G+C  SGGI                     
Sbjct: 63  LFHGAIRNSEGEHVAKLL--RKKSKVMVAFGSCAISGGIPGLANFKQKNDIFYRVYIESQ 120

Query: 122 ----------------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
                                   + Y        +V VD ++PGCPPT A      
Sbjct: 121 STQNPEKVYPQTHYAVPEGVLELPEFYKEVKSLSDVVDVDYFMPGCPPTSAQIWAVI 177


>UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1
           Tax=Sulfurihydrogenibium azorense Az-Fu1
           RepID=C1DUT4_SULAA
          Length = 249

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 29/145 (20%)

Query: 43  VDCGGCNGCEIEIFATLSPLFDAERFGIKV------VPSPRHADILLFTGAVTRAMRSPA 96
                C+GC++        L + E F I        V +  + D     G+V+       
Sbjct: 6   FKFSSCDGCQLSFINLSGELAELENFSIDYFLEGQSVNNYEYFDFSFVEGSVS--TTEEI 63

Query: 97  LRAWQSAPDPKICISYGACGNSGGI-----FHD------LYCVWG----------GTDKI 135
            R        K+ +  GAC  SGG+     F +      +Y                 ++
Sbjct: 64  ERIKDIRERSKVLVGIGACAVSGGVQSIRNFRNIDDIKTVYNTVDITKNVLENALPISQV 123

Query: 136 VPVDVYIPGCPPTPAATLYGFAMAL 160
           V VD  I GCP +           L
Sbjct: 124 VKVDFEIRGCPVSTDVVKDFINSIL 148


>UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK1_9DELT
          Length = 178

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 50/171 (29%), Gaps = 55/171 (32%)

Query: 37  SAYVYRVDCGGCNGCEIEIFA--------------TLSPLFDAERFGIKVVPSPRHADIL 82
              V  V   GC+GC +                    SPL D + F       P   D+ 
Sbjct: 4   RLRVATVWLDGCSGCHMSFLDMDELLLELAPRLELAYSPLVDRKEF-------PDRVDLA 56

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-------------------FH 123
           L  GAV+        R        ++ ++ G C   G +                     
Sbjct: 57  LLEGAVSTPEDEAKARL--VRAHSRLVVALGDCACQGNVPALRNRLDNEQLLDLVYRQQA 114

Query: 124 DLYCVWG-------------GTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
           D                      +++ VD+++PGCPP PAA +      L 
Sbjct: 115 DGPAAAPPDRNVPPLLTHSLPLHRVIAVDLFLPGCPPPPAAIVRALTAVLD 165


>UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKF2_SYNFM
          Length = 300

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 49/162 (30%), Gaps = 51/162 (31%)

Query: 48  CNGCEIEIFATLSPLFD-AERFGIK------------------VVPSPRHADILLFTGAV 88
           C GCE+ I      L D  ER  I                   VV  PR AD+ + +G +
Sbjct: 14  CAGCEVAILDQGELLLDILERISIVHAPILMDSKYRDPAGDSDVVSIPR-ADVGIVSGGI 72

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGI--------------------------- 121
                     A        I I+ G+C   GGI                           
Sbjct: 73  --RTEHGLAVAKAVRESCDILIANGSCACMGGIPSLANLVPPDVLKQGVPNLEHGVEDGD 130

Query: 122 --FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
                L       +++VPVD+++PGCPP            L 
Sbjct: 131 FELPPLTARVAAINEVVPVDIFLPGCPPPTHLFAAALQAVLE 172


>UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI
          Length = 180

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 40/152 (26%)

Query: 47  GCNGCEIEIFATLSPLFDA-ERFGIKVVP------SPRHADILLFTGAVTRAMRSPALRA 99
           GC+GC +        L +  E   I   P       P   D+ +  G+++        +A
Sbjct: 16  GCSGCHMSFLDLDERLIELVEHVEIVYSPLVDTKELPARVDVGILEGSISSEDD--LEKA 73

Query: 100 WQSAPDPKICISYGACGNSGG------------IFHDLY-------------------CV 128
                     +S G C  +G             +F   Y                     
Sbjct: 74  RLFRERCTRLVSLGDCAVTGNVPAMRNHFKLADVFDRAYRENVTLQPQIPTRRVPALLTP 133

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                  V VDV++PGCPP+  A  +  +  +
Sbjct: 134 VKPVHGEVKVDVFVPGCPPSADAIWHVLSELI 165


>UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Candidatus Korarchaeum cryptofilum OPF8
           RepID=B1L5Y5_KORCO
          Length = 319

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 54/181 (29%), Gaps = 59/181 (32%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVP-------------SPRHADIL 82
            A +    C  C GCE         LFD  E   I + P                  D+ 
Sbjct: 3   KAKIAFYWCASCGGCEEAQVDLADKLFDLIEAADIVLWPVAMDFKKEDVEKVGDGSIDVA 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLY 126
           +  G +  +     ++        K+ I+YG+C + GGI                + +  
Sbjct: 63  IINGGIRTSEHEEMVKLL--RRKSKLVIAYGSCAHMGGIPALANAYTRESILKYVYEEAP 120

Query: 127 CVWG---------------------------GTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
            V                               D ++ VD YIPGCPPTP  T    +  
Sbjct: 121 TVTNPEGKRPKTRVSVDGMDFELPEFLEYLDPLDAVIDVDYYIPGCPPTPEITWEAVSSI 180

Query: 160 L 160
           L
Sbjct: 181 L 181


>UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Tax=Thermococcaceae
           RepID=B6YU80_THEON
          Length = 265

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 23/102 (22%)

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FH 123
           DI    G+V+           +   + KI ++ GAC   GG+                + 
Sbjct: 54  DIAFIEGSVS--TEEEVELVKKIRENAKIVVAVGACATQGGVQSWEKDKSLEELWKAVYG 111

Query: 124 DL-----YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
           D        +    +  + VD  I GCPP     +Y     L
Sbjct: 112 DGKVKFEPKMAEPLENYIKVDYRIYGCPPEKKDFIYAIGTFL 153


>UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=Geobacter
           RepID=Q39QE2_GEOMG
          Length = 316

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 75/269 (27%), Gaps = 71/269 (26%)

Query: 48  CNGCEIEIFATLSPLFDAERFGIKVVPSPRHADI--------LLFTGAV-TRAMRSPALR 98
           C+GC + I      +       + +   P   D+         L +GA+ T   R  A+ 
Sbjct: 14  CSGCHVAIVDLHEKILAVLE-SVTIQRCPVLTDVKDYPKAKLGLVSGAIRTEHDRHAAI- 71

Query: 99  AWQSAPDPKICISYGACGNSGGIFHDL--------------------------------Y 126
             +      + I++G+C   GGI                                     
Sbjct: 72  --EMRKSCDLIIAWGSCAVYGGIAGAGNVHSRQEIIDAVYIGNKTTATHAPPTKEVSALE 129

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH---------ARGPGELDE 177
                 D ++ VD+Y+PGC P PA         L     +            R   + + 
Sbjct: 130 PSVSPLDSVIDVDLYLPGCAPHPAFVFDALLALLEGRSPRTATGESVCARCRRKMEKTEV 189

Query: 178 QPAEILHGDMVQPLRVKVDREARRLAGY-RYGRQIADDYL----------TQLGQGEEQV 226
                    +  P R  + +      GY   G    D  +          +       QV
Sbjct: 190 DRIRKNSEGVPDPDRCFLSQ------GYLCMGSVTLDRCMSPCPLNGIPCSGCAGATMQV 243

Query: 227 ARWLEAENDPRLNEIVSHLNHVVEEARIR 255
                 +    + E +S L  +  EA +R
Sbjct: 244 LAEPNRDIRTEIAERMSRLTEIPREAIVR 272


>UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH
          Length = 330

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 53/193 (27%), Gaps = 34/193 (17%)

Query: 37  SAYVYRVDCGGCNGCE------IEIFATLSPLFDAERFGIKVVPSPRHAD---------- 80
              V  +  G C GC         + A +      E     +  S   A+          
Sbjct: 72  RPSVVWLHFGECTGCSEAFLRTPNVGAIILETISVEYHETIMAASGHQAEKSLEQAIKTH 131

Query: 81  ----ILLFTGAVTRAMRSP---------ALRAWQSAPDPKICISYGACGNSGGI--FHDL 125
               I +  G++  A                A    P   + I+ G C   GGI      
Sbjct: 132 KGKFICVVEGSIATAYNGAYGKVGGRTFLEIANDVIPKAAVTIALGTCAAYGGIPSAAPN 191

Query: 126 YCVWGGTDKIVPV-DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
              + G    + V  + I GCPP P   L      L    + I     G      AE +H
Sbjct: 192 PGGYKGVKDAIGVATINISGCPPNPLNLLSTIVKYLNK--ETIELDELGRPLFAYAETVH 249

Query: 185 GDMVQPLRVKVDR 197
               +    + D 
Sbjct: 250 DRCPRLKHFENDE 262


>UniRef50_Q85WY3 ORF82a n=1 Tax=Pinus koraiensis RepID=Q85WY3_PINKO
          Length = 82

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 115 CGNSGGIFH-------DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
           C   G +++       D Y      DK++PVDVY P CP  P   +         
Sbjct: 21  CSCPGSMYYHIEMFGTDSYSTVHEVDKLIPVDVYSPDCPTEPEVIIDAITKLRER 75


>UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehalococcoides
           RepID=D2BG44_DEHSV
          Length = 354

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 37/132 (28%), Gaps = 22/132 (16%)

Query: 81  ILLFTGAVTRAMRSP--------------ALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           +L+  G+V                            AP     ++ G C   GGI     
Sbjct: 112 VLVIEGSVPLKDDGVYAEIGEKDGEGITMLEHVLNLAPKALAVVAAGTCSAFGGITASAP 171

Query: 127 CVWGG--TDKIVP------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
              G     +I+         V +PGCPP P   +   A  L      +     G     
Sbjct: 172 NPTGAKAVSEILKEHNITTPVVNLPGCPPHPDWVVGTLATVLMSGLDALDLDDMGRPKAY 231

Query: 179 PAEILHGDMVQP 190
             ++LH    + 
Sbjct: 232 YGKLLHDQCPRR 243


>UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clostridia
           RepID=Q3ABV6_CARHZ
          Length = 354

 Score = 57.0 bits (136), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 61/220 (27%), Gaps = 41/220 (18%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-----LFDAER 67
               + + +S+  +  +L    K    V  +    C GC + +  ++ P     L +   
Sbjct: 16  TAATLGLSQSVPEVAYALENAAKGQPPVIWIQGASCTGCSVSLLNSVHPDIKEILLEIIN 75

Query: 68  FGIKVVPSPRHADI-----------------LLFTGAVTRAM--------------RSPA 96
                  S     +                 L+  GAV                     +
Sbjct: 76  LKFHPNISAATGHVAVEAFLGEAEKNKGKFFLVVEGAVPTKDNGVYCSIGEKDGRELYFS 135

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPV--DVYIPGCPPTPAAT 152
               +     K  I+ G C   GGI        G     +++     + IPGCPP P   
Sbjct: 136 EVVKELGEKAKAVIAIGTCAAFGGIPAADPNPTGCVPVTEVIDPKKVLNIPGCPPHPDWF 195

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLR 192
           +   A  L L  +       G        I+H +  +   
Sbjct: 196 VGSLAHVL-LYNELPKTDKFGRPKMFYEGIIHDNCPRRQY 234


>UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R9W3_AMMDK
          Length = 319

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 50/184 (27%), Gaps = 59/184 (32%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPS------------PRHA- 79
           +     +       C GC++ I  T     D  +   I  +P             P    
Sbjct: 1   MAEKLKIASYWAADCGGCDVAILDTHEKFLDIVQAADIVFMPIAVDIKEKDVEAFPDGYI 60

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG----------------IFH 123
           D+  F GA+  +      +        K+ +++G+C   GG                ++ 
Sbjct: 61  DVCFFHGAIRNSENEHMAKLL--RRKSKVLVAFGSCAMMGGVPGLANFKDREGILSRVYF 118

Query: 124 DLYCVWGG---------------------------TDKIVPVDVYIPGCPPTPAATLYGF 156
           +                                     +V VD ++PGCPP     +  F
Sbjct: 119 ESPSTDNPDKVLPQTETQVREGVLTLPAFYEEVKTLADVVDVDYFMPGCPPASHQIVNVF 178

Query: 157 AMAL 160
              +
Sbjct: 179 QAIV 182


>UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ferroglobus
           placidus DSM 10642 RepID=C8S807_FERPL
          Length = 299

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 50/169 (29%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA-----------DILLF 84
           +   +      GC+GC +  F        +ERF +   P   ++           D+   
Sbjct: 2   KKIRLAFYTASGCSGCILSFFDLEEFFLSSERFSVVWAPMFTNSKLEDLEKIERIDLTFI 61

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI--FHDLYC--------------- 127
            G++  +     ++        +  ++ G C   GG+    + Y                
Sbjct: 62  EGSIRLSEHEEIVKIL--REKSEKVVALGTCAVFGGVPGLSNFYSDEEILSDVFDSDENA 119

Query: 128 --------------------VWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
                                    ++++ VD ++PGCPP+    L   
Sbjct: 120 PKPRTLLDGKYELTLPEFKDEMKRVEEVIEVDHFVPGCPPSKNQLLKII 168


>UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=63
           Tax=Proteobacteria RepID=PHNS_DESDA
          Length = 315

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 62/250 (24%), Gaps = 54/250 (21%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK----------------------V 72
            R   V  +    C GC   +  T  P  D                              
Sbjct: 53  GRRPSVVYLHAAECTGCSEALLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAA 112

Query: 73  VPSPRHAD--ILLFTGAVTRAM-----RSPALRAWQSA----PDPKICISYGACGNSGGI 121
           V  P   D  I L  GA+   M            +       P  K  +S G C   GGI
Sbjct: 113 VNGP---DGFICLVEGAIPTGMDNKYGYIAGHTMYDICKNILPKAKAVVSIGTCACYGGI 169

Query: 122 --FHDLYCVWGGTDKIVP----VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGEL 175
                      G +          + +PGCPP P   +      L    QKI     G  
Sbjct: 170 QAAKPNPTAAKGINDCYADLGVKAINVPGCPPNPLNMVGTLVAFLK--GQKIELDEVGRP 227

Query: 176 DEQPAEILHGDMVQPLRVK--------VDREARR-LAGYRYGRQIADDYLTQLGQGEEQV 226
                + +H    +                EAR+    Y  G +  + Y     +     
Sbjct: 228 VMFFGQSVHDLCERRKHFDAGEFAPSFNSEEARKGWCLYDVGCKGPETY-NNCPKVLFNE 286

Query: 227 ARWLEAENDP 236
             W  A   P
Sbjct: 287 TNWPVAAGHP 296


>UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU12_9AQUI
          Length = 252

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 48/158 (30%), Gaps = 27/158 (17%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH----ADILLFTGAVT 89
           +K    V       C+GC+         L++   F    +    +     DI    G+V+
Sbjct: 1   MKNKLRVGVFKLSSCDGCQAIFLDL-PSLWEHLDFRYWFLGKSENKLEPIDIAFVEGSVS 59

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI-----------FHDLYC---------VW 129
                 A    +     ++ ++ GAC  SGGI           F  +Y            
Sbjct: 60  TQ--EEAEFIKEVREKARLLVTIGACATSGGIQALRNFGSLEEFSSVYPKPEFIKVLKRS 117

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
               + V VD  I GCP  P          L     +I
Sbjct: 118 TPISEHVKVDYEIYGCPINPHILENFVKALLHSRRPEI 155


>UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subunit n=2
           Tax=Campylobacter RepID=B9KFD7_CAMLR
          Length = 544

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 67/220 (30%), Gaps = 54/220 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP-----LFD---AERFGIKVVPSPRHA--------- 79
           S     +    C GC   +  T  P     +FD    E     +  S   A         
Sbjct: 62  SLIWLHL--SECTGCSESLLRTSLPDFLDLIFDFISLEYHETFMSASGHQAESHLEEVLE 119

Query: 80  --DILL-FTGAVT-------------RAMRSPALRAWQSAPDPKICISYGACGNSGGI-- 121
             D LL   G V                      +    A + K   + G C + GGI  
Sbjct: 120 KKDFLLAVEGGVCAIDPFYLTIGAHGENGYEILQKC---AKNAKTIFAMGTCSSFGGIQA 176

Query: 122 FHDLYCVWGGTDKIVPVDV-YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
            H       G  K++   V  IPGCPP+ A  +      +      +  +     D+   
Sbjct: 177 AHPNPTKSIGISKVLEEKVINIPGCPPSDANIIAALCFYI------LFEQDMALDDQNRP 230

Query: 181 EILHGDMVQPLRVKVDREARRLAG----YRYGRQIADDYL 216
             L+G  +  L    +R+A+  AG         +I + Y 
Sbjct: 231 LALYGKCLHDL---CERKAKFEAGNFAQSFDDEKIKEGYC 267


>UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hydrogenobaculum sp.
           Y04AAS1 RepID=B4U5S1_HYDS0
          Length = 320

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 51/179 (28%), Gaps = 48/179 (26%)

Query: 28  ASLLKKIKRSAYVYRVDCGG--CNGCEIEIFATLSPLF-DAERFGIKVVPSPRHAD---- 80
             ++  +K+   +  +   G  C  C   +  + SP+F D               D    
Sbjct: 37  NDIINALKQKPRIPVLWFHGLECTCCSESLMRSSSPVFSDMVSL------ISLEYDDLIS 90

Query: 81  ----------------------ILLFTGAVTRAMRSPA---------LRAWQSAPDPKIC 109
                                 IL   G++T                    ++A   K  
Sbjct: 91  ASCGENLLNYKKKIIEQYKGNYILAIEGSITEFEDGACCMVGGRSFNEELLEAAEGAKAI 150

Query: 110 ISYGACGNSGGI--FHDLYCVWGGTDKIVP--VDVYIPGCPPTPAATLYGFAMALGLLE 164
           I++G+C + G +   +         D I+     V +PGCPP P          L   E
Sbjct: 151 IAWGSCASFGCVQVAYPNPTKSSSVDTIIKNKPIVKVPGCPPIPEVMASVIVYMLLKDE 209


>UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Desulfitobacterium
           hafniense RepID=B8FWY3_DESHD
          Length = 375

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 42/197 (21%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSP------------LFDAE--------RFGIKVVPS 75
               +  V+ G C G  I +    SP             +D           + + +   
Sbjct: 38  NKLPIIMVETGTCTGDSISLDNIWSPTLSDIFTNITEWRYDWTMMQSQGELAYDVLLEIE 97

Query: 76  PRHAD--ILLFTGAVTRAMRSP--------------ALRAWQSAPDPKICISYGACGNSG 119
              A   +LL  G++ R                        +     K  ++ G C   G
Sbjct: 98  KNQAHEFVLLVQGSMIRRDGGHYNYAGLENGQLITGLDLVRRLGLKAKYVVAVGHCATYG 157

Query: 120 GIFHDLYCVWG--GTDKIVPVD--VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGEL 175
           G            G   I+P    + + GCP  P   +         L  +      G  
Sbjct: 158 GPVAGYPNPTQSTGVQNILPERRVINVSGCPAHPDWIMGTLLHL--ALYGEPELEKFGRP 215

Query: 176 DEQPAEILHGDMVQPLR 192
                E +H +  +   
Sbjct: 216 KMFFGETIHNNCPRRRY 232


>UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit
           [Precursor] n=1 Tax=Desulfotalea psychrophila
           RepID=Q6ARY6_DESPS
          Length = 300

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 39/193 (20%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL-- 62
           L  + +  + +  +    +A    +L     +  ++       C+GC I +  + SP   
Sbjct: 12  LSAKMSVVLGLGSSAIPQVAEALEALTTGRSKVLWL---QAQSCSGCSISMLDSESPGPA 68

Query: 63  -FDAERFGIKVVPSPRHAD-----------------ILLFTGAVTRAMRSPALR------ 98
               +   +    +   A                  IL+  G++   M    +       
Sbjct: 69  ELLTQYISLLFHHTLSAATGESCMHIVRKSVQQGGYILVVEGSIPAGMPEACMMGGIPVG 128

Query: 99  --AWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT--------DKIVPVDVYIPGCPPT 148
               Q+A      I+ G C   GGI        G          +KI    + IPGCP  
Sbjct: 129 ELIKQAAERADYVIALGTCAAFGGIPAAEGNPTGAVPLGPFLQANKIKTPIINIPGCPSH 188

Query: 149 PAATLYGFAMALG 161
           P   +        
Sbjct: 189 PDWLVGTLVHLCK 201


>UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Allochromatium vinosum DSM 180 RepID=C5S9B0_CHRVI
          Length = 251

 Score = 53.5 bits (127), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 48/162 (29%), Gaps = 31/162 (19%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSP------LFDAERFGIKVVPSPRHADILLFTGAVT 89
               V   +   C GC++ +  TL        + +  +F   +        I    G+ T
Sbjct: 1   MKPKVAFFEFTSCEGCQLTVLDTLQRHPELLEVIEIVQFREAMSERGEDYQIAFIEGSCT 60

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------------FHDLYC 127
           R       +  +     +I ++ GAC + GGI                      + + Y 
Sbjct: 61  RPSDEA--KIREIREQAQIVVALGACAHLGGINAIRNRMPLEQTREYVYGDKKDWFETYP 118

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
                  ++ VD  IPGCP             L   +  I  
Sbjct: 119 -ARPLSAVIEVDAVIPGCPIDRKEFATAVTHLLQGRKPAIPD 159


>UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GED7_9FIRM
          Length = 254

 Score = 53.5 bits (127), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 48/159 (30%), Gaps = 29/159 (18%)

Query: 38  AYVYRVDCGGCNGCEIEIFAT------LSPLFDAERFGIKVVPS-PRHADILLFTGAVTR 90
             V       C+GC++E          L  L D   F +    + P   DI    G++  
Sbjct: 5   PKVAIFKFASCSGCQLEFLNLEPVLLDLLGLVDLTHFVMARRENKPGPYDIGFVEGSIVN 64

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG-------------------- 130
                  R  Q+  D  + ++ GAC   GG+                             
Sbjct: 65  --PEDIERLKQARRDCGLLVAIGACACHGGLQSLNNGTPQREVEARVYEHPAEVSSLKSY 122

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
             D+ V +D  + GCP      +     AL  +  +I  
Sbjct: 123 PVDEYVDIDAKLSGCPINKNELVEFVKSALLGVTPRIRP 161


>UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 Tax=Bacteria
           RepID=HOXY_RALEH
          Length = 209

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 45/183 (24%), Gaps = 45/183 (24%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS------ 75
               M  +L    +    V  +   GC GC +        L         +  S      
Sbjct: 15  PATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLPLLEKVTLLRSSLTDIKR 74

Query: 76  -PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------F 122
            P    I    G V+               +  I IS GAC   GG+             
Sbjct: 75  IPERCAIGFVEGGVSS--EENIETLEHFRENCDILISVGACAVWGGVPAMRNVFELKDCL 132

Query: 123 HDLY------------------------CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
            + Y                               ++V +D +IPGCPP   A       
Sbjct: 133 AEAYVNSATAVPGAKAVVPFHPDIPRITTKVYPCHEVVKMDYFIPGCPPDGDAIFKVLDD 192

Query: 159 ALG 161
            + 
Sbjct: 193 LVN 195


>UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound
           hydrogenase small subunit)
           (Hydrogen:quinoneoxidoreductase) n=3 Tax=Bacteria
           RepID=C1DUF2_SULAA
          Length = 416

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 16/92 (17%)

Query: 81  ILLFTGAVTRAMRSP----------ALRAWQSAPDPKICISYGACGNSGGI---FHDLYC 127
           +L   G++   M               R  + A D K  I+ GAC + GG+   + +   
Sbjct: 166 LLFVEGSIPVKMEYAFTTGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTG 225

Query: 128 VWGGTDKI--VPVDVYIPGCPPTPAATLYGFA 157
             G  D +  VPV V IP CP  P   +    
Sbjct: 226 AVGVMDVVSGVPV-VNIPACPANPVNIVGVIM 256


>UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n=17 Tax=Bacteria
           RepID=PHNS1_DESVH
          Length = 317

 Score = 53.1 bits (126), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 42/166 (25%), Gaps = 42/166 (25%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK----------------------V 72
            R   V  +    C GC   +     P  D                              
Sbjct: 54  SRRPSVVYLHNAECTGCSESVLRAFQPYLDELILDTISLDYHETIMAAAGDAAEAALHQA 113

Query: 73  VPSPRHAD--ILLFTGAVTRA---------MRSPALRAWQSAPDPKICISYGACGNSGGI 121
           V +P   D  I +  GA+  A           +         P  K  I+YG C   GG+
Sbjct: 114 VANP---DGFICIVEGAIPTADNGIYGKVANHTMLSICSDIVPKAKAVIAYGTCATFGGV 170

Query: 122 --FHDLYCVWGGTDKIVPV----DVYIPGCPPTPAATLYGFAMALG 161
                      G +  +       + + GCPP P   +      L 
Sbjct: 171 QAAKPNPTGAKGLNDALKHLGVNAINLAGCPPNPYNLVGTLVYYLK 216


>UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=29 Tax=Bacteria
           RepID=Q2J4E9_FRASC
          Length = 278

 Score = 53.1 bits (126), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 49/168 (29%), Gaps = 34/168 (20%)

Query: 45  CGGCNGCEIEIFAT------LSPLFDAERF---GIKVVPSPRHADILLFTGAVTRAMRSP 95
              C+GC++ +         L+   D   F       V  P   D+ L  G+VT      
Sbjct: 25  FASCDGCQLTLLDCEDELLSLAGEIDVSYFLEASSATVDGP--YDLSLVEGSVT--TEQD 80

Query: 96  ALRAWQSAPDPKICISYGACGNSGGI---------------------FHDLYCVWGGTDK 134
             R  Q     +  ++ GAC  +GGI                     +            
Sbjct: 81  VERIHQVRAASRRLVTIGACATAGGIQALRNFADVGDFLAAVYATPAYVSTLATSTPIST 140

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
            V VD  + GCP  P   L   +  L      I +       ++   +
Sbjct: 141 HVRVDFELQGCPINPRQLLEVISAFLARRRPNISSSAVCTECKRRGTV 188


>UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Candidatus Korarchaeum cryptofilum OPF8
           RepID=B1L3Q1_KORCO
          Length = 258

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 43/182 (23%)

Query: 45  CGGCNGCEIEIFATLS---------PLFDAERFGIKVVPSPRHAD----ILLFTGAVTRA 91
                GC+ E    L           L D   F +    S +  D    I    G+V+  
Sbjct: 8   FYSLTGCQGEYLTILGMEDILLDLLSLVDIAEFKL---ASSKEYDGKVDIAFVEGSVS-- 62

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------HDLYCVWG-- 130
                    +   + KI ++ G C   GGI                     +LY   G  
Sbjct: 63  TERDLEYIKRIRGNSKILVALGDCAVWGGIQASTSGQDPKELMRSVYKTEKNLYGFLGEH 122

Query: 131 -GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP---GELDEQPAEILHGD 186
            G  ++VPVD  I GCP             +  ++ ++         ++ E P  I+   
Sbjct: 123 KGISEVVPVDYEIQGCPIEGKEFARVLIDLVRDVKPELPDYPVCIECKVREIPCLIVERG 182

Query: 187 MV 188
           + 
Sbjct: 183 LP 184


>UniRef50_A7IHL6 Ni Fe-hydrogenase III large subunit-like protein n=4
           Tax=Proteobacteria RepID=A7IHL6_XANP2
          Length = 110

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            L+   D  R G+     PR A++LL    +   M   A  A+   P P+  +  G    
Sbjct: 41  ALAAGLDLSRAGLTEADGPRQANVLLVMLPLPAPMLKAATVAYAQMPRPRTVLVLGEGVI 100

Query: 118 SGGIFHDL 125
           +     D 
Sbjct: 101 APLPEPDS 108


>UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Rhodomicrobium vannielii ATCC 17100
           RepID=D2LGK5_RHOVA
          Length = 358

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 51/220 (23%), Gaps = 54/220 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP----LFDAERFGIKVVPSPRHA------------- 79
              +  +  GGC GC + +    SP      D  R  +   PS   A             
Sbjct: 23  RLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYHALIARIL 82

Query: 80  ------DILLFTGAVTRAM-------------RSPALRAWQSAPDPKICISYGACGNSGG 120
                 DIL   GA+ R               +       + A      I+ G+C   GG
Sbjct: 83  SGQQPLDILCVEGAILRGPNGTGRFHLQPGTGKPVMQLVAELAACAGHVIAIGSCTAYGG 142

Query: 121 IFHDLYCVWGGTDKIVP------------------VDVYIPGCPPTPAATLYGFAMALGL 162
           +      V                             + I GCP  P   +         
Sbjct: 143 VSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPAINIAGCPTHPGWIVETLVQLGDG 202

Query: 163 LEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL 202
                     G        ++H    +    +    A+  
Sbjct: 203 TFSASDLDTYGRPRFYADHLVHHGCTRNEFYEYKASAKEP 242


>UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing
           hydrogenase), gamma subunit n=3 Tax=Euryarchaeota
           RepID=Q0W6U0_UNCMA
          Length = 306

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 32/140 (22%)

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGG------------IFHDLYCVWGG------- 131
             +    R  +     K  I++G C   GG            I + +Y    G       
Sbjct: 61  RNKENMERVKKLRQRAKTVIAFGTCACYGGVSGLSILHSRDEILNGVYTNRQGTTTNVIP 120

Query: 132 -------------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
                           ++ VD YI GCPP            +      +  +      ++
Sbjct: 121 NQDIPDLLYRGYAVGDVIKVDYYITGCPPKEFFLRQILLPLIEGRIPDLQKKSVCSECDR 180

Query: 179 PAEILHGDMVQPLRVKVDRE 198
              ++    ++     V  E
Sbjct: 181 EMVLVKDWKIKRRYEGVPEE 200


>UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteobacteria
           RepID=C3XGH6_9HELI
          Length = 425

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 50/184 (27%), Gaps = 36/184 (19%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG 69
           A  +   + +  + A + A   +   R   ++ +    C GC   +  +  P  D+  F 
Sbjct: 93  AAVVTASIGLPATFAPLTARAAELADRVPIIW-LHMAECTGCSESLLRSEDPCIDSIIFD 151

Query: 70  I--------KVVPSPRHAD--------------ILLFTGAVTRAMRSPALR--------- 98
                     +  S   A+              +++  G + +                 
Sbjct: 152 YVSMEYHETIMAASGYQAEKSLEDAVKKYDGRYVMMVEGGIPKDTEYFLTIGASGRTGAE 211

Query: 99  -AWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV-PVDVYIPGCPPTPAATLY 154
                A       + G C + GG+               I+    + +PGCPP     + 
Sbjct: 212 ECRHVAKHAAAIFAIGTCSSFGGVQAAAPNPTNAHPLSDIIDKKVINVPGCPPNEKNIVG 271

Query: 155 GFAM 158
               
Sbjct: 272 TLMQ 275


>UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n=10
           Tax=Deltaproteobacteria RepID=PHSS_DESBA
          Length = 315

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 49/177 (27%), Gaps = 50/177 (28%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPL-----FDAERFGIKVV-----PSPRHADI 81
           +  K++  ++ V   GC GC + +   + P       D                   A +
Sbjct: 35  EGAKKAPVIW-VQGQGCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHM 93

Query: 82  ------------LLFTGAVT-------------------RAMRSPALRAWQSAPDPKICI 110
                       LL  GA+                        +        AP     +
Sbjct: 94  YEIAEKFNGNFFLLVEGAIPTAKEGRYCIVGETLDAKGHHHEVTMMELIRDLAPKSLATV 153

Query: 111 SYGACGNSGGIFHDLYCVWG--------GTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
           + G C   GGI      V G          +KI  + V +PGCPP P   +     A
Sbjct: 154 AVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAA 210


>UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2
           Tax=Aciduliprofundum boonei T469 RepID=B5IEA4_9EURY
          Length = 248

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 29/161 (18%)

Query: 43  VDCGGCNGCEIEIFATLSPLFDAERF-GIKVVPSPRHAD-----ILLFTGAVTRAMRSPA 96
                C GC ++     + + +  ++ GI      +  +     I    G  T       
Sbjct: 6   FSLSCCEGCSVQFLNLENEILEILKYMGINNFRLAKEINEWPVEIAFVEGTPTNRDE--I 63

Query: 97  LRAWQSAPDPKICISYGACGNSGGI--------------FHDLYCVWGGTDK-----IVP 137
           ++  +     KI ++ G C  +GG+               ++        D       V 
Sbjct: 64  IKLLKIRKYSKILVALGTCAATGGVPAIVNTLEKKEAMKIYNGVPPKIPIDAKQLKYYVD 123

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           VD  + GCP +           L  L +    +      E 
Sbjct: 124 VDYILYGCPFSKEELKELITSVL--LGKGFRNKRYSVCVEC 162


>UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes RepID=A5I2W4_CLOBH
          Length = 290

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 17/109 (15%)

Query: 81  ILLFTGAVTRAMR--------------SPALRAWQSAPDPKICISYGACGNSGGI--FHD 124
           ILL  GAV+                  +       +    K  ++ G C + GGI     
Sbjct: 97  ILLVDGAVSTKENGYYNIIANYRGRPVTALEAIKMAGEKAKYVVTVGTCSSYGGISAAKP 156

Query: 125 LYCVWGGTDKIV-PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
                   D ++    + +PGCP  P   +   A  +   + ++  +G 
Sbjct: 157 NPSGSKSVDAVINKEVIKLPGCPCHPDWVVGTLAHLVTYGKPELDNKGR 205


>UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquificaceae
           RepID=A7BI79_HYDTH
          Length = 345

 Score = 51.2 bits (121), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 81  ILLFTGAVTRAMRSP---------ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG- 130
           IL+  G+V+   +                ++A +  + I+ G+C + GGI H      G 
Sbjct: 114 ILIVEGSVSPRNKGVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGA 173

Query: 131 -GTDKIV--PVDVYIPGCPPTPAATLYGF 156
               +I+     V IPGCPP     +   
Sbjct: 174 VPVSQILGDRQVVNIPGCPPISDVMVAVI 202


>UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Persephonella
           marina EX-H1 RepID=C0QP84_PERMH
          Length = 249

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 50/178 (28%), Gaps = 54/178 (30%)

Query: 43  VDCGGCNGCEIEIFATLS------------------PLFDAERFGIKVVPSPRHADILLF 84
                C+GC+I  F                         + ERF I              
Sbjct: 7   FKFASCDGCQISFFDISEMLSHLEEKVRIKYFIEGQDRNEFERFDISF-----------I 55

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI--------FHDLYCVW------- 129
            G+V+   +    +  +     +  ++ GAC +SGGI        + D+ C         
Sbjct: 56  EGSVSTPEQE--EKVKKIRDVSEYVVTIGACSSSGGIQSVRNFSDYKDIVCSVYPKPEMI 113

Query: 130 ------GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE 181
                       + VD  I GCP    A L      +  L +K +        E   +
Sbjct: 114 KSLERSRPVSDYIDVDFEIRGCPINKEALLEVIYSVI--LGKKPYNPEYPVCMECKRK 169


>UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=delta
           proteobacterium MLMS-1 RepID=Q1NJF2_9DELT
          Length = 366

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 59/228 (25%), Gaps = 65/228 (28%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERF---------------GIKVVPSPRHADI 81
              +       C GCEI +      + + +                  I+ +     A +
Sbjct: 4   KPKLAIYWAAACGGCEIAVVNLHEKILELDAAFELFFCPCLLDTKKGDIEALADGEIA-V 62

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-------------------- 121
            LF GA+  +      +        +  I++G+C   G I                    
Sbjct: 63  TLFNGAIRTSENEEMAQLL--RRKSQTLIAFGSCAVEGCIPGLANLYDRTAIFNTVYLDN 120

Query: 122 -----------------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
                                    + Y        +V VD +IPGCPP P         
Sbjct: 121 PSLDNPAGILPQTRSQVPEGELRLPEFYDRVQTLADVVAVDFFIPGCPPEPPRIWQAVES 180

Query: 159 ALGLL----EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL 202
            L       +Q + A       E P +I    + +  R        R+
Sbjct: 181 LLNGDPPPPDQVLGAGKLAVCHECPRKIEEKKIKRFYRNHQMISDHRV 228


>UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Geobacter
           RepID=B5EBV9_GEOBB
          Length = 251

 Score = 50.4 bits (119), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 45/151 (29%)

Query: 47  GCNGCEIEIFATL------SPLFDAERF--------GIKVVPSPRHADILLFTGAVTRAM 92
            C+GC++ +          +  FD   F        G          D  +  GAV+   
Sbjct: 13  ACSGCQLTLLNCEDELAQVAARFDLVSFPMAESVEGGAPF-------DAAIVEGAVS--T 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGG-----------------IFHDLYCVWG----- 130
                  ++     ++ ++ G C   GG                 ++ D           
Sbjct: 64  PGDLANLFRLRNSSRLLVALGTCAIFGGVAAMNNGVSTREELVAAVYGDGEKTVESFAPA 123

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
                V VD  I GCPP     +      L 
Sbjct: 124 PLTNFVSVDFSITGCPPEKQEVMALLCALLN 154


>UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n=8 Tax=cellular
           organisms RepID=A4YF94_METS5
          Length = 322

 Score = 50.4 bits (119), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 37/156 (23%), Gaps = 39/156 (25%)

Query: 80  DILLFTGAV--------TRAM---RSPALRAWQSAPDPKICISYGACGNSGGI------- 121
           DILLF G++        T  M   +       + AP     ++ G C + GGI       
Sbjct: 67  DILLFEGSIVRGPAGKGTFNMFAGKPMMWWVREIAPQANYIVAVGDCASFGGIPAADPNP 126

Query: 122 ----------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
                               +    G        + + GCP  P   +    + L     
Sbjct: 127 TESTGLQFHRKEMSGFLGKDFRCKSGL-----PVINLSGCPVHPEWLITTLTLILRGEMN 181

Query: 166 KIHARGPGELDEQPAEILHGDMVQPLRVKVDREARR 201
           +             A        +          + 
Sbjct: 182 QEMLDEFNRPRIFYATTTQFGCPRQPYFTYKISTKE 217


>UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH RepID=B9L9V0_NAUPA
          Length = 306

 Score = 50.4 bits (119), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 34/148 (22%)

Query: 43  VDCGGCNGCEIEIFATLSPLFD-AERF-GIKVVPSPRHAD----------------ILLF 84
           +    C+GC +       P+ +   RF  I   P+   +D                IL+ 
Sbjct: 43  LQALSCDGCSVNFLNAEIPVTEILNRFANIVFHPTIMASDGKEAMDILMNYKSDNMILVV 102

Query: 85  TGAVTRAMRSPALR--------AWQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDK 134
            GA+  AM    +           + A + K  ++ G C    GI    ++Y   G    
Sbjct: 103 EGAIPTAMPHACMMGEMFVNDIILKKAKEAKAIVAAGTCATFAGICDMKNMYTKAGSVKY 162

Query: 135 IVPVD------VYIPGCPPTPAATLYGF 156
            +  +      V +P CP  P   LY  
Sbjct: 163 FLETNNINTPVVNLPTCPMKPKHLLYTL 190


>UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Tax=Bacteria
           RepID=B0TDW1_HELMI
          Length = 395

 Score = 50.4 bits (119), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 55/197 (27%), Gaps = 37/197 (18%)

Query: 29  SLLKKIKRSAYVYRVDCGGCNGCEIEIF--------ATLSPLFDAERFGIKVVPSPRHAD 80
             L+  +R   ++R +   C  C               +  +   +     +V +   A+
Sbjct: 68  EALETKRRMPVIWR-NFQECTCCTESFIRTQHPKASDIIMTMISLDYHETLMVAAGHQAE 126

Query: 81  --------------ILLFTGAVTRAM---------RSPALRAWQSAPDPKICISYGACGN 117
                         IL   GA+             R+      + A   K  I++G+C  
Sbjct: 127 EAVAKAIEDNRGNYILAVEGAIPVKDGGIYCCIAGRTAVDMLKEEAKHAKAIIAWGSCAV 186

Query: 118 SGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
           +G +        G      I+     + +PGCP      + G    +   E+       G
Sbjct: 187 NGCVQAANPNPTGAVPVQDIIKDKPIINVPGCPAIAE-VMAGVITHVLTFERLPELDSQG 245

Query: 174 ELDEQPAEILHGDMVQP 190
                    +H    + 
Sbjct: 246 RPKAFYGHRIHDKCNRR 262


>UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Eggerthella
           lenta DSM 2243 RepID=C8WGI4_EGGLE
          Length = 261

 Score = 50.1 bits (118), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 47/153 (30%), Gaps = 34/153 (22%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFG-IKVV--------PSPRHADILLFTGAV 88
             V  V    C GC+++I    + L D    G I +         P P   D+ +  GAV
Sbjct: 15  PRVVVVGLASCFGCQLQITNAEAHLLDV--LGQIDLRYWQLASSDPMPEDFDVAIIEGAV 72

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGI-------FHDLYCVW------------ 129
           T       +R+          I+ GAC  + GI       F +                 
Sbjct: 73  TTEESEATVRSL--REKAGAIIAVGACATTAGIPGMAAEGFLERPGQVYDRVPSACGDMV 130

Query: 130 --GGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
                  ++ VD  +  CP      +     AL
Sbjct: 131 APRAVGAVIDVDFEVRACPIDSYDFIDVLQRAL 163


>UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1U6F3_9DELT
          Length = 328

 Score = 50.1 bits (118), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 16/126 (12%)

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFH--DLYCVWGGTDKIVP--VDVYIPGCPPTPAA 151
                +        I+YG C + GG+           G D++ P    + +PGCPP P +
Sbjct: 150 LENTTKVVEKALATITYGTCASYGGVQKAAPNPTACKGVDELFPGKPIINVPGCPPNPYS 209

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD--------REARRLA 203
            +      +     ++     G       E +H +  +     +D         EAR+  
Sbjct: 210 LVGTIVYYVTKGVPEL--DSVGRPVAFYGESVHDNCPRQEFFNMDQFAPSFGSEEARK-- 265

Query: 204 GYRYGR 209
           G+   +
Sbjct: 266 GWCLRK 271


>UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helicobacter bilis ATCC
           43879 RepID=C3XE47_9HELI
          Length = 593

 Score = 49.7 bits (117), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 32/152 (21%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK---------------VVPSPRHAD-- 80
             V  +    C GC   +  T +P F+   F I                 V +  HA+  
Sbjct: 65  LKVVWLHLQECTGCSESLLRTETPSFEVLLFDIFKIVYHDLVMVSSGHGAVAALEHANSH 124

Query: 81  ---ILLFTGAVTRAMRSPALRA-----WQSAP----DPKICISYGACGNSGGIFHDLYCV 128
              +LL  G++        +       +        + +   + G C + GGI       
Sbjct: 125 EKYVLLVEGSIPMGFAKDYITLGDRNGYDEISHLIHNAEAVFAIGTCSSFGGIQSAYPNP 184

Query: 129 WGG--TDKIVPVDV-YIPGCPPTPAATLYGFA 157
             G    +I   ++  +PGCPP+    +    
Sbjct: 185 TNGHALSEIFEREIINVPGCPPSDKNIVATLL 216


>UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylobacterales
           RepID=Q30QL6_SULDN
          Length = 293

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 16/102 (15%)

Query: 78  HADILLFTGAVTRAM----RSPALRAWQSAPDPKICISYGACGNSGGIFHDL-YCVWGGT 132
             ++L+  GA++                 +   +  ++ G C   GGIF +  Y    G 
Sbjct: 58  ECEVLIIEGAISEEFQRGGVPIFEIIKNYSKRVQKILTVGTCATFGGIFRESDYKDTAGM 117

Query: 133 D-----------KIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
                         +   + I GCP  P   +         +
Sbjct: 118 HFDQDRALHNFSDFLDKTISISGCPIHPEVLVNTLYAIKKSV 159


>UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfitobacterium
           hafniense RepID=Q24VQ2_DESHY
          Length = 319

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 31/162 (19%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK--------VVPSPR 77
           +  +    + +   ++ +   GC GC   + +++ P  +     +         +  S  
Sbjct: 49  IAEAAEANLSKKPVIW-MQGQGCTGCSESLLSSVDPGPEEIILDLLSVRYHPTLMAASGE 107

Query: 78  HA-----D-------ILLFTGAVTRAM--------RSPALRAWQSAPDPKICISYGACGN 117
            A     D       IL+  G++  A         +    +   +A   +  I+ G+C  
Sbjct: 108 QAVQSLEDCIAQGHYILVLEGSIPTADSRYCFVEGKPFIEQFKLAAEKAEAVIAVGSCAC 167

Query: 118 SGGIFHDLYCVWGGTDKIVPV--DVYIPGCPPTPAATLYGFA 157
            GGI    +    G  +++     V +P CP  P   +    
Sbjct: 168 YGGIPRAGFTGAAGAQEVLEGVKVVNLPSCPVKPDRLVGLLL 209


>UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Epsilonproteobacteria
           RepID=A6QAV6_SULNB
          Length = 298

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 21/100 (21%)

Query: 79  ADILLFTGAVTRAMRSPALRAWQS-------APDPKICISYGACGNSGGIFHDLYC---- 127
            D+L+  GA             +        A   K  IS G C   GGIF +       
Sbjct: 61  CDLLIVEGA--FKEEGFLKSGVEVSSVLKKYADKAKYIISAGTCATFGGIFKENDPEEIS 118

Query: 128 --VWGGTDKIVPVDVY------IPGCPPTPAATLYGFAMA 159
              + G +K    + Y      +PGCP  P    Y   M 
Sbjct: 119 GFCFDGEEKTPRYESYASKLISLPGCPIHPRWLSYLLLMI 158


>UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit family n=14
           Tax=Campylobacter RepID=Q5HT18_CAMJR
          Length = 497

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 70/233 (30%), Gaps = 43/233 (18%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF 63
           ++       +   +++   I ++     +   ++  V+ +    C GC   +     P F
Sbjct: 30  VINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVW-LHLCECTGCSESLLRADLPSF 88

Query: 64  D--------AERFGIKVVPSPRHA----------DILL-FTG----------AVTRAMRS 94
           D         E     +  +   A          D +L   G           +     S
Sbjct: 89  DELVFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGES 148

Query: 95  PALRAWQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDKIV-PVDVYIPGCPPTPAA 151
                 + A   K   + G C + GGI   +       G  +++    V IPGCPP+   
Sbjct: 149 GYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDIN 208

Query: 152 TLY-----GFAMALGLLEQKIHARGPG-----ELDEQPAEILHGDMVQPLRVK 194
            +           L  L+++            ++ E+ A+   G   +    +
Sbjct: 209 IIATLSFFALFGVLPELDEQNRPVWAYGKCLHDICERKAKFESGIFAEHFDDE 261


>UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 Tax=Bacteria
           RepID=C5Q420_STAAU
          Length = 37

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 219 LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
           LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR
Sbjct: 1   LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 37


>UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=10
           Tax=Proteobacteria RepID=B5EQ53_ACIF5
          Length = 265

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 42/148 (28%), Gaps = 38/148 (25%)

Query: 45  CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA-----------DILLFTGAVTRAMR 93
              C+GC++          D  R   ++V     A           DI    G+V+    
Sbjct: 13  FSSCDGCQLAFLNLGE---DLLRL-AELVEIVHFAEAGPVDPDAVVDIAFVEGSVSTPED 68

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFH---------------------DLYCVWGGT 132
               R  +   + +  IS GAC  +GG+                                
Sbjct: 69  E--ERIQKIRKNSRHLISIGACATAGGLQALRNLADGPGWIAEIYAQPEHIHSLATSTPI 126

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMAL 160
              VPVD+ + GCP      L      L
Sbjct: 127 AAHVPVDLELWGCPVNGRQVLGAVRALL 154


>UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Denitrovibrio
           acetiphilus DSM 12809 RepID=C1SPM4_9BACT
          Length = 310

 Score = 47.7 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 16/98 (16%)

Query: 80  DILLFTGAVTRAMRSPALR----AWQSA----PDPKICISYGACGNSGGIFHDLYCVWGG 131
            IL+  G++   M+   +      + +           ++ G+C   GGI        G 
Sbjct: 103 HILVLEGSIPAEMKKACMLGEEPLYDALKKHLEKASAVVASGSCSCFGGIPASGANETGA 162

Query: 132 TD--------KIVPVDVYIPGCPPTPAATLYGFAMALG 161
            D         I    + IPGCP  P   +   A  LG
Sbjct: 163 IDIVQYMRETGISKPLIKIPGCPVHPDRLMGTVAYILG 200


>UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacteria
           RepID=MBHS_OLICO
          Length = 360

 Score = 47.7 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 13/126 (10%)

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDKIV--PVDVYIPGCPPT 148
           +    +   +A   K  IS+G+C + G +              +++     + +PGCPP 
Sbjct: 138 KPFVDQLRYAAKHAKAIISWGSCASHGCVQAARPNPTRATPVHQVITDKPIIKVPGCPPI 197

Query: 149 PAATLYGFAMAL--GLLEQKIHARGPG-----ELDEQPAEILHGDMVQPLRVKVDREARR 201
                      L  G L +      P       + ++     H D  Q +    D  ARR
Sbjct: 198 AEVMTGVITYMLTFGKLPELDRTGRPKMFYSQRIHDKCYRRPHFDAGQFVESFDDEGARR 257

Query: 202 LAGYRY 207
             GY  
Sbjct: 258 --GYCL 261


>UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=Endoriftia persephone
           'Hot96_1+Hot96_2' RepID=UPI0001698F29
          Length = 156

 Score = 47.0 bits (110), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 45  CGGCNGCEIEIFATLSPLFDA-ERFGIKVVP-----SP-RHADILLFTGAVTRAMRSPAL 97
              C+GC++ +      L +      I          P  H D+ L  G+++        
Sbjct: 15  FSSCDGCQLALLNLGEALLELPNYLEIVHFAEAGPSDPTAHVDLALVEGSIS--TPEDIE 72

Query: 98  RAWQSAPDPKICISYGACGNSGGI 121
           R  Q   +    IS GAC  +GGI
Sbjct: 73  RIRQVRKNSDYLISIGACATAGGI 96


>UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Archaeoglobaceae
           RepID=D2RD73_ARCPR
          Length = 352

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 19/115 (16%)

Query: 79  ADILLFTGAV------TRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH-------DL 125
           A IL+  GAV      T   +       ++A      I+ G C   GGI           
Sbjct: 110 AKILIVEGAVQDEGFCTIHGKDFREHLKEAAEVADYIIAVGQCATYGGIPGAKPWDGEPN 169

Query: 126 YCVWGGTDKIV------PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
                G    +         + IP CP  P   +   A  +  +  ++   G  +
Sbjct: 170 PTGAKGVQDFLYEVGINKTVINIPCCPAHPDHIIVTLASLMLGVVPELDKYGRPK 224


>UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteria RepID=MBHS_BRAJA
          Length = 363

 Score = 46.6 bits (109), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDKIV--PVDVYIPGCPPT 148
           +    +    A D    I++GAC + G +             DK++     + +PGCPP 
Sbjct: 139 KPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNKPIIKVPGCPPI 198

Query: 149 PAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQP 190
               + G    +    +       G      ++ +H    + 
Sbjct: 199 AE-VMTGVVTFITTFGKLPELDRQGRPKMFYSQRIHDKCYRR 239


>UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria RepID=C0QPV6_PERMH
          Length = 306

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 26/121 (21%)

Query: 80  DILLFTGAVTRAMRSPALRAW-------QSAPDPKICISYGACGNSGGIFHDLYCV---- 128
           D L+  GAVT   R   +  +       +        I+ G C   G  +  LY      
Sbjct: 63  DFLIIEGAVTSNKRFHRIGKYSIKYIINKLKSKADYIIAVGNCAVHGN-YPALYNPDQIT 121

Query: 129 -----WGGTDKIVP---------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
                  G   ++P           + I GCP  P             L+ K+ ++   +
Sbjct: 122 GIQFGLNGKKGLLPQKFRTKSGYPVINITGCPVHPEWITKTVLTLSYGLDLKLDSQNRPK 181

Query: 175 L 175
            
Sbjct: 182 E 182


>UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Opitutus
           terrae PB90-1 RepID=B1ZXG1_OPITP
          Length = 334

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 49/182 (26%), Gaps = 59/182 (32%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVPSP-----RHADIL-------- 82
              V    C  C GCE  I      +    E   I   P       +  D L        
Sbjct: 3   KPKVAFYWCAACGGCEEAIVDFAEDILGVIEAVDIVFWPVAMDFKKKDVDALPDQGITAT 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI--------------------- 121
              GA+  + +    +        +  I+YGAC + GGI                     
Sbjct: 63  FLNGAIRTSEQEEMAQLL--RRKSQFLIAYGACAHLGGIPGLANQFDREQLLSYVYEQTP 120

Query: 122 ----------------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
                                   +        D++V VD YIPGCPPTP  T       
Sbjct: 121 TIDNPTHVRPQPAHQNNGHSLTLPEFRHTVRSLDQVVAVDYYIPGCPPTPKITKAAITAL 180

Query: 160 LG 161
           L 
Sbjct: 181 LE 182


>UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicobacter
           RepID=Q7VJP5_HELHP
          Length = 552

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 29/151 (19%)

Query: 81  ILLFTGAVTR-AMRSPAL----------RAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
           IL+  G V+                      + A   +   + G C + GG+        
Sbjct: 122 ILVIEGGVSLGNHAHFLTSGADSITGEEECKEVAQKAQAIFAVGTCSSFGGVQAAYPNPT 181

Query: 130 G--GTDKIVPVDV-YIPGCPPTPAATLYGFAMALGLLEQKI----------HARGPGELD 176
              G D  +   +  IPGCPP+ A  +      + L E             + +   ++ 
Sbjct: 182 QSIGIDSFLSQRIINIPGCPPSEANIIGSILYYILLQELPPTDSLHRPIWSYGKNLHDMC 241

Query: 177 EQPAEILHGDMVQPLRVKVDREARRLAGYRY 207
           E+ A+   GD VQ        +     GY  
Sbjct: 242 ERKAKFESGDFVQSFDDPHLED-----GYCL 267


>UniRef50_Q0FXV5 Putative uncharacterized protein n=1 Tax=Fulvimarina pelagi
           HTCC2506 RepID=Q0FXV5_9RHIZ
          Length = 391

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 55  IFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICI 110
           +   L  LF+  RF      SPRHA I L  G +    R    R     P P++ +
Sbjct: 11  MRDRLERLFNDARF--VRAASPRHAAIFLIAGRMRLEDREDLRRLHDQMPHPRVTL 64


>UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteobacteria
           RepID=Q31DZ5_THICR
          Length = 813

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 15/92 (16%)

Query: 81  ILLFTGAVTRAMRSPALRAWQSAP-----------DPKICISYGACGNSGGIFHDLYCVW 129
           IL+  GAV   M    LR                      ++ G+C   GG+        
Sbjct: 606 ILIVEGAVPLGMGGNFLRIGPQGETGEALLKRVAQHASAVMAVGSCAFDGGVVAAAPNPT 665

Query: 130 G--GTDKIVPVD--VYIPGCPPTPAATLYGFA 157
           G  G  + +  D  + +PGCP  P   +    
Sbjct: 666 GAVGVSEALGRDDIINLPGCPVNPINVVGTLL 697


>UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfurivibrio
           alkaliphilus AHT2 RepID=C8R2V0_9DELT
          Length = 305

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 50/203 (24%), Gaps = 44/203 (21%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSP-----LFDAERFGIKV---VPSPRHA---------- 79
             +  +    C GC I +    SP     + D  +          S   A          
Sbjct: 40  PKLLYLQGLSCTGCSISLLQADSPSPLSMITDYSQLVFHTDLSATSGAQAMELINSFIDG 99

Query: 80  ---D-ILLFTGAVTRAMRSP-----------ALRAWQSAPDPKICISYGACGNSGGI--F 122
              D +L   GA+   M                RA ++       ++ G+C   GGI   
Sbjct: 100 QAGDYVLAIEGAIPAGMPEACIIDHKPFADYLERAARTMSGA---VAIGSCACDGGIPAA 156

Query: 123 HDLYCVWGGTDKIVP------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
                   G  +           + I GCP  P    +     + +    +    P    
Sbjct: 157 EGNPTGAVGLAEFYRNRNINQPVINIRGCPVHPDWVWHTITHLVLVGNPNLVNGSPRVFF 216

Query: 177 EQPAEILHGDMVQPLRVKVDREA 199
           E+    L              + 
Sbjct: 217 ERRLHELCPRYYDFQEEIFAEKL 239


>UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Magnetococcus sp. MC-1 RepID=A0L609_MAGSM
          Length = 282

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 33/173 (19%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAE-RFGI--KVVPSPRHAD------ILLFTG 86
           +   V      GC G ++ I    + L     R  I   ++ S + +D      + +  G
Sbjct: 10  KKLRVGIYSFTGCAGDQLAILNDTTVLLGLAQRAEICSFIMASSQESDQEGRLDLAIVEG 69

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGG-----------------IFHDL---- 125
           ++       AL   +   D    ++ G C   GG                 ++ D     
Sbjct: 70  SICSEQERTALEKLRQRSDA--LMALGTCAVWGGLPAMNAKTIPIHTMKEQVYGDSTVFP 127

Query: 126 -YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
                    + V VD  + GCP             L  +              
Sbjct: 128 GAREAEPLSRFVKVDYAVTGCPIEIDEFAQVVTAILNGVRPVQTDASVCSECR 180


>UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2KSS0_9ACTO
          Length = 423

 Score = 45.8 bits (107), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 14/126 (11%)

Query: 78  HADILLFTGAVTRAM---------RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
              IL+  G++             +S      +SA +  + ++ GAC   G +       
Sbjct: 142 QDHILVVNGSIPVKDGGIYCTIGGKSAQQVLEESAENASMILAVGACAVYGSVQAARPNP 201

Query: 129 WG--GTDKIVP--VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
            G  G D+I+     + + GCPP         A  L    +       G       + +H
Sbjct: 202 TGAVGVDEIIKDKPVINVAGCPPIGEVITATLAYILTK-GKAPELDAEGRPLFAYGQRIH 260

Query: 185 GDMVQP 190
               + 
Sbjct: 261 DSCPRR 266


>UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Spirosoma
           linguale DSM 74 RepID=D2QHS8_9SPHI
          Length = 326

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 44/173 (25%), Gaps = 60/173 (34%)

Query: 43  VDCGGCNGCEIEIFATLSP-LFDA-ERFGIKVVPSPR---------------------HA 79
           +  G C+G  +       P + D    FG+ ++  P                        
Sbjct: 7   LQGGACSGNTMSFLNAEEPTVVDLVTDFGVNILWHPSIGLEIGDQVTHLLNDIVSGRTQC 66

Query: 80  DILLFTGAV--------TRA---MRSPALRAWQSAPDPKICISYGACGNSGGI------- 121
           DIL++ G++        T      R         +      ++ G C   GGI       
Sbjct: 67  DILVYEGSIIQGPNGTGTMNYFADRPMQDWVRDLSKVVGYVVAIGDCATWGGIPAVAPNP 126

Query: 122 ---------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
                          F     V  G   ++     IPGCP  P          
Sbjct: 127 SESTGMQFLKKAKGGFLGSDYVSKGGLPVI----NIPGCPAHPDWITQILVAI 175


>UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clostridium botulinum
           RepID=B2TM84_CLOBB
          Length = 313

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 53/181 (29%), Gaps = 41/181 (22%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP--------LFDAERFGIKV 72
           E I      +  + K       ++  GC G  I +  +  P        L +   FG   
Sbjct: 34  EMIDKATEEIKARNKEKINAIWLETSGCFGEVISLLNSEMPDLPFVLKNLVNMTFFGSIC 93

Query: 73  --------------VPSPRHADILLFTGAVTRAMR--------------SPALRAWQSAP 104
                         + S +   ILL  GA+                   +      Q+A 
Sbjct: 94  GDQGEKAYERILDTLNSDKEY-ILLVCGAIPINADGLYTVLATYQGRKITAMELVKQAAQ 152

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGT---DKIVPVD-VYIPGCPPTPAATLYGFAMAL 160
             K  IS G C   GG       V       + ++  D + IPGCP  P  TL      +
Sbjct: 153 KAKYIISIGTCACYGGPTAAKPNVSQALSVKEYLMRNDIINIPGCPANPVWTLGTVGYLI 212

Query: 161 G 161
            
Sbjct: 213 N 213


>UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteobacteria
           RepID=Q2W8A6_MAGSA
          Length = 384

 Score = 45.0 bits (105), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 51/180 (28%), Gaps = 54/180 (30%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA----ERFGIKVVPSPR-----HA--- 79
           ++   +  +Y + CGGC G  +    + +P  D        GI VV  P       A   
Sbjct: 69  RRPGMNLNLYWLQCGGCGGDTMSFLNSETP--DILQLFSGLGIDVVYHPSLSNTSQAEQH 126

Query: 80  -------------DILLFTGAV-----------TRAMRSPALRAWQSAPDPKICISYGAC 115
                        DIL+  GAV           T+  R         A   +  ++ G C
Sbjct: 127 SQLEVISSGEMPLDILVVEGAVLRGPAGTGMYDTKGRRPKKDIVAALARQARFVVAAGTC 186

Query: 116 GNSGGI------------FHDL-YCVWGGTDKIVP---VDVYIPGCPPTPAATLYGFAMA 159
              GG             FH      + G D         + + GCP  P          
Sbjct: 187 AAFGGFGARTEIEATGLQFHRSEPGGFLGADFRAKSGLPVLNLSGCPCHPQVLSSVLTAL 246


>UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminibacter mediatlanticus
           TB-2 RepID=A6DCC1_9PROT
          Length = 369

 Score = 45.0 bits (105), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG-----GTDKIVPV 138
             G +  +  +      + A   K  I+ G C + GG+        G     G D I   
Sbjct: 145 VYGTIGPSGETYKDHLLRLASKAKAIIAVGNCASFGGVVAANPNPTGATGVMGVDGINVP 204

Query: 139 DVYIPGCPPTPAATLYGFAM 158
            + +P CP  P   +    M
Sbjct: 205 IINLPACPVNPETMIGVLIM 224


>UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Proteobacteria
           RepID=A5GFC8_GEOUR
          Length = 378

 Score = 44.3 bits (103), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 36/168 (21%)

Query: 25  SMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-----LFDAERFGI---KVVPSP 76
           +  A  ++K    + ++ +    C GC   +  +  P     + D          +  S 
Sbjct: 41  TKVAEAMEKNGNPSVIW-LHFQECTGCSESLLRSTHPTISTLILDMISLDYHETLMAGSG 99

Query: 77  RHAD--------------ILLFTGAVTRAM---------RSPALRAWQSAPDPKICISYG 113
             A+              +L+  GA+             ++       +A +    IS G
Sbjct: 100 AQAEKSLHDSMLANKGKYLLVVEGAIPTKESGIYCKVGGKTALESLQHAASNAAAIISIG 159

Query: 114 ACGNSGGIFHDLYCVWG--GTDKIVP--VDVYIPGCPPTPAATLYGFA 157
            C + GGI        G  G   IV     + IPGCPP+P   L    
Sbjct: 160 TCASYGGIQSVGPNPTGAVGVRDIVKDKPIINIPGCPPSPYNLLSTVM 207


>UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Halothermothrix
           orenii H 168 RepID=B8D1R7_HALOH
          Length = 334

 Score = 43.5 bits (101), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 8/80 (10%)

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT---DKIVPVDVY 141
            G VT       +R        K  ++ G C + GG       + G     D +    + 
Sbjct: 128 EGPVT---AVELVRWLGEL--AKYAVAVGTCASFGGASAASPNITGSVALGDVLDRQIIN 182

Query: 142 IPGCPPTPAATLYGFAMALG 161
           + GCP  P   +   A    
Sbjct: 183 VSGCPINPDWFVGTLAHLQM 202


>UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Clostridium
           RepID=B8HZS9_CLOCE
          Length = 299

 Score = 43.5 bits (101), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 17/109 (15%)

Query: 81  ILLFTGAVTRAMR--------------SPALRAWQSAPDPKICISYGACGNSGGI--FHD 124
           IL   GAV                   +               I+ GAC + GG+     
Sbjct: 98  ILAVEGAVATKNNGMYNVIGRWQGKPVTALNAIKLLGEKASYVIALGACASHGGVSAAKP 157

Query: 125 LYCVWGGTDKIV-PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
                     I+    + +PGCP  P   +   A  L   E ++  R  
Sbjct: 158 NPSDCVSVQSILNRKVIKLPGCPCHPDWFMGTLAHILLYGEPELDNRDR 206


>UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltaproteobacteria
           RepID=Q1NM22_9DELT
          Length = 343

 Score = 43.5 bits (101), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 65/217 (29%), Gaps = 41/217 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS-PLFDA-ER 67
           A G    ++ DE +A+          R   V+ +    C+GC + +  T    + D   R
Sbjct: 31  AAGAAPLLSFDELLAA--EGGENPFPRPNLVW-LQGASCSGCSLSLLNTEEITVLDLLTR 87

Query: 68  FG-IKVVPSPRHAD------------------ILLFTGAVTRAMRSPALRAWQSAPD--- 105
           F  +   P+   A                   +L+  G +   M    L A +   +   
Sbjct: 88  FSRLLYHPTLAQATGNQVTDLLTKLTTGVEPYLLVLEGGIPAGMPHACLLAHRPFEEWVS 147

Query: 106 -----PKICISYGACGNSGGI--FHDLYCVWGGTDKIVPVD------VYIPGCPPTPAAT 152
                   C++ G C   GG+             D+ +         V +P CP  P   
Sbjct: 148 RLAQGADACVAVGTCAAFGGVAAMPGTLTGVVSLDRHLATRDIAVPLVNLPSCPMKPEHL 207

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
           +Y      G   +     G G      A  +H    +
Sbjct: 208 VYTLLH-YGRHRRLPELDGRGRPRRFFANTVHQRCPR 243


>UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine translocation
           pathway signal n=1 Tax=delta proteobacterium MLMS-1
           RepID=Q1NRB7_9DELT
          Length = 299

 Score = 43.1 bits (100), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 45/165 (27%), Gaps = 44/165 (26%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSP-----LFDAERFGIKV---VPSPRHA----DILL-- 83
             +  +    C GC I +    SP     + D  +          S   A    +  +  
Sbjct: 37  PKILYLQGLSCTGCSISLLQAASPTPLEMITDYSQLAFHTDLSSTSGAQAMELINAFIDG 96

Query: 84  --------FTGAVTRAMRSP-----------ALRAWQSAPDPKICISYGACGNSGGIFHD 124
                     GAV   M                RA ++       ++ G+C   GGI   
Sbjct: 97  EAGEYFLAIEGAVPGTMPRACVIDHQPFASYLERAARTMSGA---VAVGSCACDGGIPAA 153

Query: 125 LYCVWGGTD--------KIVPVDVYIPGCPPTPAATLYGFAMALG 161
                G           ++ P+ + I GCP  P    +     + 
Sbjct: 154 EGNPTGAIGLREFYRQRELEPLLIDIRGCPIHPDWLWHTITHLVK 198


>UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Bacteria
           RepID=B2UPQ9_AKKM8
          Length = 398

 Score = 43.1 bits (100), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 76/255 (29%), Gaps = 45/255 (17%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGC------------ 51
           ++       +   ++  + IA      +  +KR   ++ +    C GC            
Sbjct: 44  MISLMGVATVTGGISNAQEIA----DKMAALKRPVVIW-LQLQECTGCLESTIRSYNEEI 98

Query: 52  -EIEIFATLSPLFDA------ERFGIKVVPSPRHADILLFTGAVTRAMR----SPALRAW 100
            ++ + A   P  +       E     +  + R   IL+  G+V         + A    
Sbjct: 99  GDMVLSAVSMPYVELLMAPSGEAANQALEDAIREPHILVINGSVPVNDGGVYCTVAGDTV 158

Query: 101 QSA-----PDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAA 151
           ++       +    ++ G+C   G I        G  G   I+     + +PGCPP    
Sbjct: 159 ENMLRHCAENASHILAVGSCAYFGSIQAARPNPTGAVGIRDILTDRTVINVPGCPPIGDV 218

Query: 152 TLYGFAMALG-------LLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARR-LA 203
                   L         LE +        +        H D  Q + V  D  AR    
Sbjct: 219 ITAVIMYILTFDRAPECDLESRPLMAYGTRIHNNCPRRAHFDAGQFVNVFDDENARECFC 278

Query: 204 GYRYGRQIADDYLTQ 218
            Y+ G +  D +   
Sbjct: 279 LYKVGCKGPDTFSPC 293


>UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n=9
           Tax=Desulfovibrio RepID=PHNS2_DESVH
          Length = 324

 Score = 43.1 bits (100), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGT---DKIVPVD---VYIPGCPPTPAATLYGFAMA 159
            K  I+ G C + GGI        G     + + P     + I GCPP P   +      
Sbjct: 155 AKAVIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPINIAGCPPNPVNYIGTVVHL 214

Query: 160 LGLLEQKIHARGPGELDEQPAEILHGDMVQP 190
           L     ++     G         +H    + 
Sbjct: 215 LTKGMPEL--DSAGRPKMFYGTTVHDQCERR 243


>UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax=Helicobacter cinaedi CCUG
           18818 RepID=UPI000197A0EB
          Length = 554

 Score = 42.7 bits (99), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 19/150 (12%)

Query: 81  ILLFTGAVTR-AMRSPAL----------RAWQSAPDPKICISYGACGNSGGI--FHDLYC 127
           IL+  G V+                      + A   +   + G C + GG+   +    
Sbjct: 122 ILVIEGGVSLGENAYFLTSGADSTNGENECLEVARHAQAIFAIGTCSSFGGVQAAYPNPT 181

Query: 128 VWGGTDKIVP-VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
              G    +    V IPGCPP+  A + G  M   LL++               + LH  
Sbjct: 182 QSQGISTFLRQPIVNIPGCPPS-EANMIGSLMYYILLQEIPPCDSLNRPLWSYGKNLHEM 240

Query: 187 MVQPLRVKVDREARRLAGYRYGRQIADDYL 216
             +  +     E+          ++ D Y 
Sbjct: 241 CERKAKF----ESGDFVESFDDERLQDGYC 266


>UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydrogenibium azorense
           Az-Fu1 RepID=C1DUE6_SULAA
          Length = 312

 Score = 42.4 bits (98), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 24/104 (23%), Gaps = 25/104 (24%)

Query: 80  DILLFTGAVTRAMRSPALRAWQSAP-------DPKICISYGACGNSGGIFHDLYC-VWGG 131
           + L+  GAV         + +                ++ G C   G  F  LY     G
Sbjct: 70  NFLVVEGAVNTKKDEVFFQGFDVFEILNNLKDKSDYILAVGNCACYGN-FPALYNENVKG 128

Query: 132 TDKIVP----------------VDVYIPGCPPTPAATLYGFAMA 159
                                   + I GCP  P   +      
Sbjct: 129 LQYRFKDKGGFLGEDFKTKSGYPIINITGCPAHPEWIVRTILSL 172


>UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), small subunit n=2
           Tax=Euryarchaeota RepID=Q0W5V7_UNCMA
          Length = 388

 Score = 42.4 bits (98), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 51/196 (26%), Gaps = 63/196 (32%)

Query: 29  SLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP--------------LFD--AERFGIKV 72
           ++    K+  ++      GC GC         P                D    + GI +
Sbjct: 42  AIADSRKKLLWLR---GSGCGGCTASFLNGGYPDVLAALDSVGAVITYHDGLMAQQGITL 98

Query: 73  VPSPRHAD-----------------ILLFTGAV----------TRAMRSPALRAW-QSAP 104
               +  D                 +L+  GA+                     + ++A 
Sbjct: 99  DGVSKTPDTYNALKKLDLLIDSGDYVLVVEGAIPNGPDGTGKYCTTGGRAVKEIFSEAAE 158

Query: 105 DPKICISYGACGNSGGI-------------FHDLYCVWGGTDKIV---PVDVYIPGCPPT 148
             +  I+ G C   GGI              +     + G    +      + +PGCP  
Sbjct: 159 KAETIIALGTCAAFGGISSAGRSVTDARGVAYTGASRFNGILSELNMRKKVINVPGCPAH 218

Query: 149 PAATLYGFAMALGLLE 164
           P   L   A  L   E
Sbjct: 219 PDWFLLTLADVLSGAE 234


>UniRef50_Q1AZS0 Ni Fe-hydrogenase III large subunit-like protein n=1
           Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZS0_RUBXD
          Length = 540

 Score = 42.4 bits (98), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGA 114
             +   D E  G+ +   PRHA +LL  G +  A+R  A   +     P+  ++ GA
Sbjct: 36  ARARGLDVEAAGLGMTGVPRHASVLLVVGELPAALRRAAAVVYAQMMRPRAVLAAGA 92


>UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Proteobacteria
           RepID=C6NZV2_9PROT
          Length = 371

 Score = 42.0 bits (97), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 42/150 (28%), Gaps = 22/150 (14%)

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           G   + +P ++      G     M        ++A      ++ G C   GGI       
Sbjct: 129 GSIPMGNPGYS---AIAGISNHDM------LVETAKGAAAIVAVGTCATYGGIPMADPNP 179

Query: 129 WG--GTDKIV--PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
            G      IV     + +PGCPP P   + G                 G       E +H
Sbjct: 180 TGAVPVSDIVKDKPIINVPGCPPIP-VVMTGVLAHFLTFGGIPELDALGRPKSFYGETIH 238

Query: 185 GDMVQP-------LRVKVDREARRLAGYRY 207
               +             D EA R  G+  
Sbjct: 239 DRCYRRPFYDQGKFAETFDDEAARN-GWCL 267


>UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ferroglobus placidus
           DSM 10642 RepID=C8S958_FERPL
          Length = 355

 Score = 42.0 bits (97), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 45/150 (30%)

Query: 47  GCNGCEIEIFATLSP-LFD-AERFGIKVVPSPR----------------HADILLFTGAV 88
             + C + +     P L+D  E   + +   P                   D+L+  G++
Sbjct: 49  SDSACTVSLLQAADPDLYDAVEELKVGIYFHPTVMPDFGDKAIKVLEEIEPDVLVLEGSI 108

Query: 89  -TRAMRSP-------------ALRAWQSAPDPKI-CISYGACGNSGGI------FHDLYC 127
            T  M                     +  P  K+  + +G+C   GGI            
Sbjct: 109 PTGDMEYACTFGERNGKPVTLVEWLNELIPKTKVAVVGFGSCATYGGIPSAKDFEGKSPT 168

Query: 128 VWGGTDKIVP------VDVYIPGCPPTPAA 151
              G  + +         V +PGCP  P  
Sbjct: 169 NAVGLYQFLKDKKPAVPVVLLPGCPGHPDW 198


>UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Thermosinus
           carboxydivorans Nor1 RepID=A1HLY8_9FIRM
          Length = 325

 Score = 42.0 bits (97), Expect = 0.021,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 60/199 (30%), Gaps = 23/199 (11%)

Query: 54  EIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYG 113
           E+ A  +  +     G   V + RH   L   G         A R  Q A   K  ++ G
Sbjct: 97  EVRARYAGQYYLVVEGAVPVAAGRHTATL---GEHNGQPVPFADRVRQMAAKAKAVMAVG 153

Query: 114 ACGNSGGI--FHDLYCVWGGTDKIVPVD--VYIPGCPPTPAATLYGFAMA-------LGL 162
            C   GGI               +V     V +PGCP  P   L             L  
Sbjct: 154 TCAAYGGIPAAGVNPTASKAVSAVVRGTPLVNVPGCPIHPDWVLGTLLHLIRYGMPELDK 213

Query: 163 LEQKIH--ARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLG 220
           L++ +    +   ++ E+  +   G   + L             Y+ G +    +     
Sbjct: 214 LQRPLMFFGKSIHDICERRPDFDQGRFAKKLSEP-------GCLYKLGCKGPMAFGDCAE 266

Query: 221 QGEEQVARWLEAENDPRLN 239
           +     A W    N P L+
Sbjct: 267 RKFNNGANWCVGANSPCLS 285


>UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=10 Tax=Bacteria
           RepID=D2ATL3_STRRD
          Length = 358

 Score = 41.2 bits (95), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 11/69 (15%)

Query: 103 APDPKICISYGACGNSGGI--FHDLYCVWGGTDKIVPVD---------VYIPGCPPTPAA 151
           AP     ++ G C   GGI           G    +  D         V +PGCP  P  
Sbjct: 137 APKATAVLAAGTCATYGGIHAMAGNPTGAMGVADYLGWDWRSKAGLPIVNVPGCPIQPDN 196

Query: 152 TLYGFAMAL 160
                   L
Sbjct: 197 LSETILYLL 205


>UniRef50_A9E0C1 Putative uncharacterized protein n=1 Tax=Oceanibulbus indolifex
           HEL-45 RepID=A9E0C1_9RHOB
          Length = 340

 Score = 40.8 bits (94), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPK 107
           G++VV +PR A +LL  G +  A+     R     P P+
Sbjct: 36  GLRVVETPRAAAVLLVVGTIPEALIPQLHRLHDQLPHPR 74


>UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Actinobacteria
           (class) RepID=D1VJL8_9ACTO
          Length = 416

 Score = 40.0 bits (92), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 23/80 (28%), Gaps = 13/80 (16%)

Query: 94  SPALRAWQSAPDPKI--CISYGACGNSGGI--FHDLYCVWGGTDKIVPVD---------V 140
              + AW     PK    ++ G C   GGI           G    +  D         V
Sbjct: 165 PITVNAWLDRLAPKALAVLAVGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSSAGIPIV 224

Query: 141 YIPGCPPTPAATLYGFAMAL 160
            +PGCP  P          L
Sbjct: 225 CVPGCPIQPDNLSETIVYLL 244


>UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella tarda EIB202
           RepID=D0ZEI9_EDWTE
          Length = 471

 Score = 39.7 bits (91), Expect = 0.093,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 112 YGACGNSGGI--FHDLYCVWGGTDKIV--PVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
           +G C + G +             DK++     + +PGCPP P   +      +   ++  
Sbjct: 255 WGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPD-VMSAIITYMVTFDRLP 313

Query: 168 HARGPGELDEQPAEILHGDMVQP 190
                G       + +H    + 
Sbjct: 314 DVDRMGRPLMFYGQRIHDKCYRR 336


>UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase) (Membrane-bound
           hydrogenase small subunit) n=23 Tax=Bacteria
           RepID=Q0RN51_FRAAA
          Length = 359

 Score = 39.7 bits (91), Expect = 0.096,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 11/69 (15%)

Query: 103 APDPKICISYGACGNSGGI--FHDLYCVWGGTDKIVPVD---------VYIPGCPPTPAA 151
           AP     I+ G C   GGI           G    +  D         V +PGCP  P  
Sbjct: 133 APRAWAVIAIGTCAAYGGIHAMAGNPTGSMGLLDYLGRDFTSAGNLPIVNVPGCPVQPDD 192

Query: 152 TLYGFAMAL 160
            +      L
Sbjct: 193 FMETLTWLL 201


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacter...   287   2e-76
UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bac...   243   6e-63
UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5        239   8e-62
UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobac...   230   4e-59
UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   218   1e-55
UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen l...   216   8e-55
UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   212   1e-53
UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=B...   208   1e-52
UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   201   2e-50
UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen l...   198   1e-49
UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=c...   192   7e-48
UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=P...   192   8e-48
UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=...   192   1e-47
UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=c...   191   2e-47
UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase sma...   191   2e-47
UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   191   3e-47
UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID...   190   4e-47
UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=B...   190   4e-47
UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   189   7e-47
UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=...   189   7e-47
UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Ta...   188   1e-46
UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   187   3e-46
UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   186   7e-46
UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyce...   185   1e-45
UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...   185   1e-45
UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax...   185   1e-45
UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   185   1e-45
UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   185   1e-45
UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=...   185   1e-45
UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=...   184   2e-45
UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemm...   184   2e-45
UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-li...   184   2e-45
UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=p...   184   2e-45
UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   184   2e-45
UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   184   3e-45
UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax...   183   4e-45
UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   183   5e-45
UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 ...   183   5e-45
UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   182   8e-45
UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=F...   182   1e-44
UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   182   1e-44
UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 T...   181   2e-44
UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteob...   181   2e-44
UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   181   2e-44
UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   180   3e-44
UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=...   180   5e-44
UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=...   180   5e-44
UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=S...   179   5e-44
UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=T...   179   7e-44
UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometr...   179   8e-44
UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ...   179   9e-44
UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax...   178   2e-43
UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=c...   177   2e-43
UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=De...   177   2e-43
UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   177   3e-43
UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   176   5e-43
UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   176   6e-43
UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 T...   176   6e-43
UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd s...   176   8e-43
UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   176   1e-42
UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=P...   175   1e-42
UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=c...   175   1e-42
UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydr...   175   1e-42
UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=...   175   2e-42
UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   174   2e-42
UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=...   173   4e-42
UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...   173   4e-42
UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...   173   5e-42
UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collins...   173   6e-42
UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collins...   173   6e-42
UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=N...   172   1e-41
UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria...   172   1e-41
UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=c...   171   1e-41
UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=T...   170   4e-41
UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   170   4e-41
UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...   169   6e-41
UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=...   169   6e-41
UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Ta...   169   6e-41
UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea R...   169   6e-41
UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=...   169   7e-41
UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japoni...   169   8e-41
UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=...   169   8e-41
UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   169   1e-40
UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Pr...   169   1e-40
UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (Mbx...   167   3e-40
UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cy...   167   3e-40
UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=F...   167   3e-40
UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=F...   167   4e-40
UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   166   5e-40
UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   166   7e-40
UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   166   8e-40
UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfit...   165   1e-39
UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=...   165   1e-39
UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   165   2e-39
UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=D...   164   3e-39
UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   164   3e-39
UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   164   3e-39
UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   164   4e-39
UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A...   164   4e-39
UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteri...   163   5e-39
UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q...   161   2e-38
UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarch...   161   2e-38
UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea Rep...   159   9e-38
UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 ...   156   5e-37
UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Ep...   156   7e-37
UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit ...   156   7e-37
UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   156   7e-37
UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=...   153   7e-36
UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ...   151   2e-35
UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   151   2e-35
UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   151   2e-35
UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meio...   150   6e-35
UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   149   8e-35
UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=S...   148   2e-34
UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=T...   147   4e-34
UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   147   4e-34
UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   145   1e-33
UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   144   2e-33
UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospiri...   144   4e-33
UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermopl...   143   4e-33
UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=...   143   5e-33
UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   141   2e-32
UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   141   2e-32
UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulf...   140   3e-32
UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   140   4e-32
UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   140   5e-32
UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   139   1e-31
UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarch...   139   1e-31
UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN    138   2e-31
UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=I...   137   5e-31
UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   137   5e-31
UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   136   7e-31
UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13...   136   8e-31
UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophi...   130   4e-29
UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=6...   127   3e-28
UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxi...   127   4e-28
UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit fa...   126   9e-28
UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Glucono...   125   1e-27
UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shige...   125   2e-27
UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small sub...   125   2e-27
UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulib...   124   3e-27
UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clost...   123   4e-27
UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   123   8e-27
UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanoca...   122   2e-26
UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteoba...   120   5e-26
UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n...   119   7e-26
UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH   117   3e-25
UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Ta...   115   1e-24
UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=...   115   2e-24
UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subuni...   114   2e-24
UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n...   114   4e-24
UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, sma...   114   4e-24
UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfit...   113   5e-24
UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax...   112   9e-24
UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax...   112   1e-23
UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...   112   2e-23
UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=De...   111   2e-23
UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl v...   110   3e-23
UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria R...   110   4e-23
UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=...   110   5e-23
UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax...   109   7e-23
UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetom...   109   8e-23
UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehaloc...   109   1e-22
UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   109   1e-22
UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 ...   109   1e-22
UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   107   3e-22
UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, puta...   107   3e-22
UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   107   4e-22
UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   107   5e-22
UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax...   106   6e-22
UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subuni...   106   7e-22
UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota ...   105   1e-21
UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   105   2e-21
UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Co...   104   2e-21
UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteri...   104   3e-21
UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquifica...   104   3e-21
UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hy...   104   3e-21
UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit famil...   103   6e-21
UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   102   8e-21
UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomirag...   102   8e-21
UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   102   9e-21
UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   102   1e-20
UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermo...   102   2e-20
UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subuni...   101   2e-20
UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subuni...   101   2e-20
UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2...   101   2e-20
UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   100   6e-20
UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   100   7e-20
UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=G...   100   8e-20
UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteoba...    99   2e-19
UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 T...    99   2e-19
UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Ta...    98   2e-19
UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clost...    98   2e-19
UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=...    98   2e-19
UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gam...    98   3e-19
UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (...    97   3e-19
UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermoco...    97   4e-19
UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=...    97   5e-19
UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helic...    97   5e-19
UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit F...    97   5e-19
UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteria...    97   6e-19
UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    96   8e-19
UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    96   8e-19
UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacte...    96   9e-19
UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria ...    96   9e-19
UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subuni...    96   1e-18
UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n...    95   2e-18
UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silv...    95   2e-18
UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    95   2e-18
UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    94   3e-18
UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    94   5e-18
UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH Re...    94   5e-18
UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicob...    94   6e-18
UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes Re...    93   7e-18
UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subuni...    93   1e-17
UniRef50_C1GND6 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...    92   1e-17
UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    92   2e-17
UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 ...    91   4e-17
UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI         90   6e-17
UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    90   9e-17
UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=...    89   1e-16
UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    88   2e-16
UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Ar...    88   3e-16
UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylo...    88   3e-16
UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    87   4e-16
UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Ta...    87   5e-16
UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    86   8e-16
UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subuni...    85   2e-15
UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    85   2e-15
UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...    85   2e-15
UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Ep...    84   3e-15
UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    84   3e-15
UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    84   4e-15
UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...    84   4e-15
UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    84   5e-15
UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    83   7e-15
UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    83   8e-15
UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 T...    83   9e-15
UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    83   1e-14
UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    81   5e-14
UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    80   9e-14
UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit fa...    79   2e-13
UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl v...    78   2e-13
UniRef50_Q6A6I9 NADH dehydrogenase subunit n=2 Tax=Propionibacte...    77   4e-13
UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    77   6e-13
UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 ...    76   1e-12
UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria Re...    76   1e-12
UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=...    68   4e-10
UniRef50_A9B2V8 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    65   2e-09
UniRef50_C7J5D7 Os07g0116900 protein n=3 Tax=Oryza sativa RepID=...    65   3e-09
UniRef50_Q85WY3 ORF82a n=1 Tax=Pinus koraiensis RepID=Q85WY3_PINKO     56   1e-06
UniRef50_A7IHL6 Ni Fe-hydrogenase III large subunit-like protein...    53   9e-06
UniRef50_Q0FXV5 Putative uncharacterized protein n=1 Tax=Fulvima...    48   3e-04
UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 ...    46   0.001

Sequences not found previously or not previously below threshold:

UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminiba...   103   5e-21
UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Pr...   100   3e-20
UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n...   100   7e-20
UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Pr...    96   2e-18
UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Peloto...    94   4e-18
UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella...    92   1e-17
UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Ba...    92   2e-17
UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Th...    91   3e-17
UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltapr...    91   5e-17
UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n...    90   8e-17
UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax...    89   1e-16
UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax...    89   2e-16
UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacter...    88   3e-16
UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Cl...    87   5e-16
UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=B...    86   2e-15
UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Ve...    85   2e-15
UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subu...    84   5e-15
UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fr...    84   6e-15
UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteo...    77   4e-13
UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydr...    77   5e-13
UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ha...    77   5e-13
UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine t...    75   2e-12
UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fe...    73   7e-12
UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Cl...    73   8e-12
UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_...    72   1e-11
UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Ac...    72   2e-11
UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), s...    70   8e-11
UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    69   2e-10
UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    66   9e-10
UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fl...    61   3e-08
UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase)...    61   4e-08
UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small sub...    56   9e-07
UniRef50_C9LFS3 2-methylthioadenine synthetase n=10 Tax=Bacteroi...    41   0.043
UniRef50_Q1AZS0 Ni Fe-hydrogenase III large subunit-like protein...    41   0.046

>UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacteria RepID=HYCG_ECOLI
          Length = 255

 Score =  287 bits (735), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS
Sbjct: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG
Sbjct: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120

Query: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA
Sbjct: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180

Query: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240
           EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE
Sbjct: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240

Query: 241 IVSHLNHVVEEARIR 255
           IVSHLNHVVEEARIR
Sbjct: 241 IVSHLNHVVEEARIR 255


>UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bacteria
           RepID=C7MLM8_CRYCD
          Length = 283

 Score =  243 bits (619), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 146/244 (59%), Positives = 184/244 (75%), Gaps = 4/244 (1%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            P  +D+ IA  KA+LL  IKRS Y+YRVDCGGCNGCEIEIF TL+P+FDAERFGIK + 
Sbjct: 36  EPKVLDQKIAEAKAALLNDIKRSVYIYRVDCGGCNGCEIEIFGTLTPVFDAERFGIKNMA 95

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SPRHADIL++TGAVTRAMR PALRA+++APDPK+ +SYGACG +GGIFHD YCVWGGTDK
Sbjct: 96  SPRHADILVYTGAVTRAMRLPALRAYEAAPDPKLIVSYGACGCTGGIFHDNYCVWGGTDK 155

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK 194
           + PVDVYIPGCPP+PA T+YGFAMALGLL QK+H +   E + + A I+  D+   LR +
Sbjct: 156 LFPVDVYIPGCPPSPAQTIYGFAMALGLLGQKLHEKHLVEGEGEQAPIMFADIPYKLRCE 215

Query: 195 VDREARRLAGYRYGRQIADDYLTQL----GQGEEQVARWLEAENDPRLNEIVSHLNHVVE 250
           ++REARR+AGY YGR + D ++  L    G+    V   +EAE+DPR  EI + L  ++ 
Sbjct: 216 LEREARRMAGYVYGRDLVDTFMQALEPEDGKVLTSVDALIEAESDPRKVEIYADLKQILT 275

Query: 251 EARI 254
              +
Sbjct: 276 SKIV 279


>UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5
          Length = 274

 Score =  239 bits (609), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 110/247 (44%), Positives = 156/247 (63%), Gaps = 11/247 (4%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
           +P  +     + +    L K IKRS  VYR+DCG CNGCEIEIFA ++P++D ERFG K+
Sbjct: 6   VPQDIKTANDLTAKLEHL-KNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKL 64

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
           V +PRHADIL+ +G VTR M  P LRA+++APDPKI +++GACG+SGGIFHD Y VWGG 
Sbjct: 65  VANPRHADILICSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSSGGIFHDAYSVWGGI 124

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ-PL 191
           DKI+PVDVYIPGCPP PA+ +YG  MALG+++QK+H +   +    P  +    +     
Sbjct: 125 DKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQKLHKKSYEDDSTLPPPVEKSVIGDILF 184

Query: 192 RVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVAR---------WLEAENDPRLNEIV 242
              +  E++RL  Y +GR + D Y++ +    +              ++ E DPR  E +
Sbjct: 185 ERDLQAESKRLMSYIFGRALFDKYMSAIKTASDVHDPNSARTAMLEAIKKEEDPRYAECM 244

Query: 243 SHLNHVV 249
           + L++ V
Sbjct: 245 ALLHNDV 251


>UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobacteria
           RepID=C6ANV6_AGGAN
          Length = 258

 Score =  230 bits (586), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 156/251 (62%), Positives = 196/251 (78%), Gaps = 5/251 (1%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           N   P   NGI  P ++DE+IA MK +LLK I+RSAYVYRVDCGGCNGCEIEIF+T++P+
Sbjct: 2   NTQIPMPVNGISTPFSIDENIAKMKQALLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPV 61

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           FDAERFGIKVV SPRHADILLFTG+VTRAMR+PA+RA+Q+APDPKICI+YGACG  GGIF
Sbjct: 62  FDAERFGIKVVASPRHADILLFTGSVTRAMRTPAMRAYQAAPDPKICIAYGACGCGGGIF 121

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           HDLYCVWGG+D+IVPVDVYIPGCPPTPAAT+YGFAMALGLL+QK+  +         A++
Sbjct: 122 HDLYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLKGKQEKADPNAEAKL 181

Query: 183 LHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQV-----ARWLEAENDPR 237
               +   LR+ ++REARRLAGYR G  IA+ ++  + + ++         +LE E DPR
Sbjct: 182 RFPTIPLDLRISLEREARRLAGYRQGGNIANQFMAMMSEDDKVPFGVRLGEYLEREADPR 241

Query: 238 LNEIVSHLNHV 248
           L+EI++ L+ +
Sbjct: 242 LSEIINRLHAI 252


>UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=638 Tax=cellular organisms
           RepID=NDUS7_HUMAN
          Length = 213

 Score =  218 bits (556), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 2/173 (1%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           +    P+     P P +  E + +    L+   +RS  ++ +  G    C +E+    +P
Sbjct: 42  TQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMHMAAP 99

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +D +RFG+    SPR +D+++  G +T  M     + +   P+P+  +S G+C N GG 
Sbjct: 100 RYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGY 159

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           +H  Y V  G D+IVPVD+YIPGCPPT  A LYG       ++++   +    
Sbjct: 160 YHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYR 212


>UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=3
           Tax=cellular organisms RepID=B6YT72_THEON
          Length = 266

 Score =  216 bits (549), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 26/239 (10%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S +V+ VD G CNGC+IEI   L+P +DAER GIK+VPSPRHAD LL +G +TR     
Sbjct: 5   KSVWVFHVDSGSCNGCDIEILDVLTPYYDAERLGIKLVPSPRHADALLVSGPLTRQTYYA 64

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV-------------WGGTDKIV----- 136
              A+++  P P+I ++ G C +SGGIF++ Y +              GG + ++     
Sbjct: 65  VKAAYEAMPPKPRIVVAIGTCASSGGIFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGK 124

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD 196
             D+YIPGCPP+P   LYG A  LGL E+K+         E    +    + + + + + 
Sbjct: 125 KPDMYIPGCPPSPEEILYGLAQLLGLKEKKMKGEYYYAD-EIEFVLPERPIEERIYLTLR 183

Query: 197 REARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
              RR+ GY    ++ +D++  + + +E            RL+E+V       +++R++
Sbjct: 184 ESLRRVVGYFDREKVLEDFMALVEKAQESENP------RERLHELVIGYFLREKDSRVK 236


>UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=57 Tax=cellular organisms
           RepID=NDUS7_MOUSE
          Length = 224

 Score =  212 bits (539), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 2/159 (1%)

Query: 16  PMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS 75
           P +  E + +    L+   +RS  ++ +  G    C +E+    +P +D +RFG+    S
Sbjct: 67  PRSRAEYVVTKLDDLINWARRS-SLWPMTFG-LACCAVEMMHMAAPRYDMDRFGVVFRAS 124

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G +T  M     + +   P+P+  +S G+C N GG +H  Y V  G D+I
Sbjct: 125 PRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRI 184

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           VPVD+Y+PGCPPT  A LYG       ++++   +    
Sbjct: 185 VPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYR 223


>UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=Bacteria
           RepID=NUOB_RUBXD
          Length = 251

 Score =  208 bits (530), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 9/225 (4%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRH 78
           + +I +     L    R   ++ +  G    C IE+ +T     D ERFG      SPR 
Sbjct: 9   EPNIITTSTDKLFNWARKNSLWPLQFG-LACCAIEMMSTGMAHNDLERFGAGFFAGSPRQ 67

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           AD+++ +G V+  M     R ++  P+PK  I+ GAC  SGG F D Y V  G D+++PV
Sbjct: 68  ADVMIVSGTVSTKMAERMTRLYEQMPEPKWVIAMGACAISGGPFLDGYSVLMGADRVIPV 127

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE--ILHGDMVQPLRVKVD 196
           DVY+PGCPP P A ++G       +E++              E   +   + +    ++ 
Sbjct: 128 DVYVPGCPPRPEALIFGIMTLQKKIEREQQVGYEKPRPALVDEEGNIREYLPEREYRQIS 187

Query: 197 R-EARRLAG--YRYGRQIADDYLTQLGQGEEQVARWLEAENDPRL 238
             +A R  G        +       L  G      W+  E   RL
Sbjct: 188 EGKAHRPKGIKRLPRTYVFQR--KGLPPGSMTDVGWIPPEARERL 230


>UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Eukaryota
           RepID=NDUS7_RECAM
          Length = 182

 Score =  201 bits (511), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHAD 80
           E I S    L+    R   ++ +  G    C +E+  + +  +D +RFGI   PSPR +D
Sbjct: 30  EFIVSKMDELVNWA-RKGSLWPMTFG-LACCAVEMMHSAASRYDLDRFGIIFRPSPRQSD 87

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +++  G +T  M     + +    +P+  +S G+C N GG +H  Y V  G D+IVPVD+
Sbjct: 88  VMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDI 147

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHA 169
           Y+PGCPPT  A LYG       +++    
Sbjct: 148 YVPGCPPTAEALLYGLLQLQKKIKRSRKT 176


>UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=1
           Tax=Thermococcus onnurineus NA1 RepID=B6YTX0_THEON
          Length = 273

 Score =  198 bits (503), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 30/241 (12%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS +V+ ++ G CNGC+IEI   L+P +D ERFGIK+V SPRHA  LL +G +TR     
Sbjct: 8   RSIWVFHLNTGSCNGCDIEIIDVLTPFYDVERFGIKLVGSPRHAHALLVSGPLTRQAYYG 67

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV---------------WGGTDKIVP-- 137
           A    ++  P+P++ ++ G C  SGGIF++ Y V                GG  +++   
Sbjct: 68  AKETIKAMPPEPRVIVAIGTCTCSGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADL 127

Query: 138 --------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
                     +YIPGCPP P   +YG A  +GL+E+K+  +   + +  P ++  G + +
Sbjct: 128 RDEGEKVGPVIYIPGCPPRPEEIIYGIAQLVGLVEKKLSYQEYSD-ELVPFKLPEGPLEE 186

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVV 249
            +R+ +    R L GY    +I +D++  + + E+        E   RL +  +     V
Sbjct: 187 RIRLTLMERLRHLVGYLDREKILEDFMGLVKEAEKSENP---REELARLVKDYAAKCGDV 243

Query: 250 E 250
            
Sbjct: 244 R 244


>UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=cellular organisms
           RepID=NUOB_GRABC
          Length = 194

 Score =  192 bits (489), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP 76
              D+         L    R+  ++ +  G    C +E+     P +D +RFG+    SP
Sbjct: 40  EMADKGFVVANLDKLVNWARTGSLWPMTFG-LACCAVEMIHAYMPRYDLDRFGVIPRASP 98

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           R +D+++  G +T  M     R +   P+P+  IS G+C N GG +H  Y V  G D+IV
Sbjct: 99  RQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 158

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PVDVY+PGCPPT  A +YG       + +
Sbjct: 159 PVDVYVPGCPPTAEALVYGIMQLQKKIRR 187


>UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=Pirellula staleyi
           DSM 6068 RepID=D2R6Y4_9PLAN
          Length = 227

 Score =  192 bits (488), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 5/181 (2%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPR 77
           V+E++ +          R + ++ +  G    C IE+ A  +  +D +RFG      +PR
Sbjct: 30  VEENVFTTSVEQAINWARQSSIWPMTFG-LACCAIEMMAAGASRYDMDRFGAGAFRATPR 88

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-FHDLYCVWGGTDKIV 136
            AD+++  G VT  M S   R +   PDPK  I+ GAC   GG  F   Y V  G D +V
Sbjct: 89  QADLMIVAGTVTYKMASRVRRLYNMMPDPKFVIAMGACTVGGGPYFKWGYHVVKGVDLVV 148

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLE--QKIHARGPGELDEQPAEILHGDMVQPLRVK 194
           PVDVYIPGCPP P A L G       ++  +    +  G       E +  ++  P    
Sbjct: 149 PVDVYIPGCPPRPEALLEGLMRIQDKIKGHRIAKKKSTGSGFLTVGEKVEDELPIPHHSG 208

Query: 195 V 195
            
Sbjct: 209 Y 209


>UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=NUOB1_THEYD
          Length = 199

 Score =  192 bits (487), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 10/169 (5%)

Query: 10  ANGIPVPMTVDESI--------ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
            + +  P+ +++ I               +    R + ++ +  G    C IE+ AT + 
Sbjct: 5   VDTVTEPVEIEQGIKIVPAANTIITTLDKIASWGRCSSLWPLTFG-LACCAIEMMATAAS 63

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +D +RFGI +  +PR AD+++  G VT+ M    +  +   P+P+  I+ G+C  SGGI
Sbjct: 64  HYDLDRFGIIMRATPRQADVMIIAGTVTKKMAPVIVNLYHQMPEPRYVIAMGSCACSGGI 123

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           F + Y    G D+I+PVDVYIPGCPP P A + G       ++ + H +
Sbjct: 124 F-NTYSTVQGVDEILPVDVYIPGCPPRPEALIEGLLKLQEKIKTEPHKK 171


>UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=cellular organisms
           RepID=A3DKH2_STAMF
          Length = 165

 Score =  191 bits (486), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/137 (49%), Positives = 91/137 (66%)

Query: 28  ASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGA 87
            S  K I+ + ++   + G CNGC+IE+ A ++PL+D ERFGIK+ PS RHADIL+ TGA
Sbjct: 21  DSKYKIIRYTPWLIHFNTGACNGCDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTGA 80

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 147
           VT+       R ++  PDPK  ++ GAC  SGG+FH+ Y V  GTDK++PVD+Y+PGCPP
Sbjct: 81  VTKKAAERLKRLYEQMPDPKFVVAVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCPP 140

Query: 148 TPAATLYGFAMALGLLE 164
            P A L G    L  LE
Sbjct: 141 RPEAILDGIVKLLKRLE 157


>UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase small subunit n=13
           Tax=cellular organisms RepID=B6YU96_THEON
          Length = 175

 Score =  191 bits (484), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 99/174 (56%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           ++  P D N      +  E +    A L + I RS +V+ V+ G CNGC+IEI A L+P 
Sbjct: 2   SIKVPADQNRTNGTTSEREMLEKRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPR 61

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +DAERFG+K+V SPRHAD+LL TG VT          ++  PDPKI I+ G+C   G +F
Sbjct: 62  YDAERFGVKLVGSPRHADVLLVTGPVTDQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVF 121

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
           ++          I+PVDVY+PGCPP P A LYG  +AL  L + +    P   +
Sbjct: 122 YESPFTNAPLSNIIPVDVYVPGCPPRPEAILYGVVLALEKLAKILKGEVPEGEE 175


>UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_HELMI
          Length = 175

 Score =  191 bits (484), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 2/151 (1%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VV 73
           V   + ++I       +    R   ++ +   G   C IE+ AT +  FD  RFG +   
Sbjct: 15  VDELIKKNIIMTSLEAVFNWARGNSLWPLS-SGLACCAIEMMATGASRFDMARFGYEVFR 73

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
           PSPR AD+++  G +T  M     R ++  P+PK  I+ G+C  +GG F D Y V  G D
Sbjct: 74  PSPRQADLIIIAGTLTWKMAPAIQRVYEQMPEPKWIIAMGSCACTGGPFADSYAVVPGVD 133

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           K++PVDVY+PGCPP P A L GF      ++
Sbjct: 134 KVIPVDVYVPGCPPRPEALLDGFLKLKAKIQ 164


>UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID=B6IT61_RHOCS
          Length = 196

 Score =  190 bits (482), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 72/186 (38%), Positives = 95/186 (51%), Gaps = 2/186 (1%)

Query: 4   LLGPRDAN-GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           L GPR      P   TV+     +  +  +++ RS  + +VD G CN CE+EI A  +P+
Sbjct: 10  LKGPRTIAGPAPADATVEALARRLDTASRRRLGRSLAIRQVDAGSCNACEMEIHALNNPV 69

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +D ERFG   V SPRHAD+LL TG VT  MR   L+ W++ PDPK  ++ G C   GG F
Sbjct: 70  YDLERFGFSFVASPRHADVLLVTGPVTTNMREALLKTWEATPDPKWVVALGQCAIDGGPF 129

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL-EQKIHARGPGELDEQPAE 181
            D Y V GG +K+VPVD+ IPGCPP P   L      +             G     P E
Sbjct: 130 ADSYAVVGGVEKVVPVDLMIPGCPPRPVDILAALVALIEAEARPPSRPAASGTPAGAPRE 189

Query: 182 ILHGDM 187
                +
Sbjct: 190 RREPTL 195


>UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=Bacteroidales
           RepID=NUOB_BACV8
          Length = 198

 Score =  190 bits (482), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 74/152 (48%), Gaps = 2/152 (1%)

Query: 29  SLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHADILLFTGA 87
             L    RS  ++ +     + C IE  A  +  +D  RFG +V   SPR AD+++  G 
Sbjct: 42  DDLINWGRSNSLWPLTFA-TSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIMVAGT 100

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 147
           +T  M     R +    DPK  I+ G C  SGG F   Y V  G DKI+PVDVYIPGCPP
Sbjct: 101 ITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIPGCPP 160

Query: 148 TPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
            P A LYG       ++ +    G    + +P
Sbjct: 161 RPEALLYGMIQLQRKVKLEKFFGGVNRKENEP 192


>UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Ajellomyces
           dermatitidis RepID=C5GDP9_AJEDR
          Length = 245

 Score =  189 bits (480), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 56/176 (31%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKA-----SLLKKIKRSAYVYRVDCGGCNGCEIEIF 56
           S L   R      +  + DE   +M         +    R A ++ +  G    C +E+ 
Sbjct: 67  STLGVARMERSSSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLG-LACCGLEMM 125

Query: 57  ATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACG 116
           A   P +D +R G     SPR +D+L+  G VT  M       +   PDPK  IS G+C 
Sbjct: 126 AVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCA 185

Query: 117 NSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           N GG +H  Y V  G D+++PVDVY+PGCPPT  A +Y  ++    L  K      
Sbjct: 186 NGGGYYHYSYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKLIVKSRTTRI 241


>UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=Myxococcales
           RepID=NUOB2_SORC5
          Length = 182

 Score =  189 bits (480), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 78/174 (44%), Gaps = 4/174 (2%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKK---IKRSAYVYRVDCGGCNGCEIEIFATL 59
           NL+ P               I +     +       RS  V+ +  G    C IE+  T 
Sbjct: 6   NLMAPPRGWEAKYESDGGGVITTSVDQTVNWLLNWGRSNSVWYMLFG-LACCAIELMQTG 64

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
            P  D ERFG    PSPR +D+ +  G +T  M +   R +    +P+  IS G+C N G
Sbjct: 65  GPRGDLERFGAAPRPSPRSSDLFIIAGTLTYKMATRVKRLYDQMSEPRFVISMGSCSNCG 124

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
           G+F   Y V  G D+I+PVDVY+PGCPP P A L G       ++ +      G
Sbjct: 125 GLFQYAYSVCKGVDQIIPVDVYVPGCPPRPEALLEGLLKIQEKIKSERALGRRG 178


>UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Tax=cellular
           organisms RepID=NDHK_THEEB
          Length = 237

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 5/175 (2%)

Query: 1   MSNLLGPRDANGIPVPM---TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFA 57
           M+N   P   N I  P     + E+I     + +    R + ++ +  G    C IE  A
Sbjct: 1   MTNTTSPAILNPIARPEVPQELAENIILTSLNDVYDWARLSSLWPLMYG-TACCFIEFAA 59

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            +   FD +RFG+    SPR AD+++ +G +T  M    +R ++  P PK  I+ GAC  
Sbjct: 60  MIGSRFDFDRFGLVPRNSPRQADLIITSGTITMKMAPALVRLYEQMPSPKYVIAMGACTI 119

Query: 118 SGGIF-HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           +GG+F  D Y    G DK++PVDVY+PGCPP P A +         +  +     
Sbjct: 120 TGGMFSSDSYSAVRGVDKLIPVDVYLPGCPPRPEAIMDAIVKLRKKIANEHINER 174


>UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_CLOB8
          Length = 169

 Score =  187 bits (474), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 5/161 (3%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPS 75
             ++++I   K        R+   + +  G    C IE+ A     +D  RFG +    S
Sbjct: 13  EQIEKNIILTKLDDTLNYFRAHSFWPLTFG-LACCAIEMMAAGGARYDIARFGYEVFRAS 71

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G +T  M     + +   P+PK  I+ G+C  SGG F D Y V  G D  
Sbjct: 72  PRQADLMIVAGTITEKMAPIVKKIYDQMPEPKWVIAMGSCATSGGPFVDSYNVVPGADTF 131

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
           +PVDVYIPGCPP P A ++G       +   IH +  G  +
Sbjct: 132 LPVDVYIPGCPPRPEALIHGLLTLKEKI---IHPKEVGRSE 169


>UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IG01_9CLOT
          Length = 266

 Score =  186 bits (471), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 90/165 (54%), Gaps = 9/165 (5%)

Query: 8   RDANGIPVPMTVDESI---------ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAT 58
           RD         +DE I           +   + KK  RS  +  VD G CNGC+ EI A 
Sbjct: 102 RDLLRATPLYVIDEEINGTDYELIGKKLNEKVAKKFGRSLNIREVDAGSCNGCDYEIQAL 161

Query: 59  LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
             P  D ERFGI  V SPRHAD+LL TG V+R M    ++ + + P PK+ ++ GAC  S
Sbjct: 162 NGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVVAAGACACS 221

Query: 119 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
           GG+F D Y    G D I+PVDVYIPGCPP P A +YG    +G L
Sbjct: 222 GGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILKGIGRL 266


>UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyces limnophilus DSM
           3776 RepID=C1ZCK3_PLALI
          Length = 225

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 4/187 (2%)

Query: 6   GPRDANGIP-VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
            P  + G P +    +E++            + + V+ +  G    C +E+ AT    +D
Sbjct: 18  NPLPSAGSPWIEGRFEENLIVTTLEQAMNWGQLSSVWPLTFG-IACCAMEMMATGMSKYD 76

Query: 65  AERFGI-KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-F 122
            +RFG      +PR AD+++  G VT  M S   R +   PDPK  I+ GAC   GG  F
Sbjct: 77  LDRFGSGAFRATPRQADLMIVAGTVTYKMASRIRRLYDQMPDPKYVIAMGACTIGGGPYF 136

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
              Y V  G D +VPVDVYIPGCPP P A L G       +  +   R        P   
Sbjct: 137 KYGYHVVKGVDLVVPVDVYIPGCPPRPEALLEGVMRIQDKIRARKLGRNTVSQLPVPHRS 196

Query: 183 LHGDMVQ 189
            +G +  
Sbjct: 197 GYGKLAP 203


>UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_ACIBL
          Length = 213

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 12  GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK 71
                   +E I            R   ++ +  G    C IE+ +  +  FD  RFG +
Sbjct: 45  RATFGEQPEEGIVLTTLDNAVNWIRKNSIWPMTFG-LACCAIEMMSMGASRFDIARFGAE 103

Query: 72  -VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
              PSPR +D+++  G V++ M       +   P+PK  IS GAC  SGG+F + Y +  
Sbjct: 104 VFRPSPRQSDLMIIAGRVSQKMAPVIRHLYLQMPEPKWVISMGACATSGGVF-NNYALVQ 162

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
           G ++ +PVD+Y+PGCPP P   +Y   +    ++ + 
Sbjct: 163 GVNQYIPVDIYVPGCPPRPEQLIYAITLLQEKIQAER 199


>UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax=Bacteria
           RepID=NUOB1_ROSS1
          Length = 268

 Score =  185 bits (469), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRA 91
              R + ++ +  G    C IE+ AT    FD  RFG +    SPR AD+++  G VT+ 
Sbjct: 26  NWGRRSSIWPLSFG-LACCAIEMMATGLARFDLARFGAEMFRASPRQADLMIVAGTVTKK 84

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M    +R +   P+P+  IS GAC  SGG F D Y V  G D ++PVDVYIPGCPP P A
Sbjct: 85  MAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEA 144

Query: 152 TLYGFAMALGLLEQKIHA--RGPGELDEQPAEIL 183
            L+        ++ +     R  G+ + +   + 
Sbjct: 145 LLHALMTLQKQIDAQRLNQVRWYGKREAKEYPVP 178


>UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteroidales
           RepID=NUOB_AZOPC
          Length = 191

 Score =  185 bits (469), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRH 78
             +IA  K + L    RS  V+ +     + C IE     +  +D  RFG +V   SPR 
Sbjct: 23  GANIAIAKLNDLINWGRSNSVWPLTFA-TSCCGIEFMCLGAARYDFARFGWEVTRNSPRQ 81

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           AD++   G +   M     R +    +PK  I+ G+C  SGG F   Y    G DKI+PV
Sbjct: 82  ADVVFCCGTIVHKMAPVLKRLYDQMSEPKYVIALGSCAISGGPFKSSYHTIMGIDKIIPV 141

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLE 164
           DVYIPGCPP P A +YG       ++
Sbjct: 142 DVYIPGCPPRPDAMIYGMIQLARKIK 167


>UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_HYDS0
          Length = 177

 Score =  185 bits (469), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 74/163 (45%), Gaps = 2/163 (1%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA 79
                +     L    R   ++ V  G    C IE+    +  FD +R G+    SPR A
Sbjct: 7   GNGFITTTVDELLSWGRRNALWPVTIG-LACCAIEMMHAAASRFDIDRLGMIFRASPRQA 65

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+L+  G V   +       W   P+PK CIS G C ++GG F   Y    G D+I+PVD
Sbjct: 66  DVLIVAGTVVNKVAPMLKLVWDQMPEPKWCISMGGCASAGGPFP-TYSTLQGIDRIIPVD 124

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           VYIPGCPPTP   +YG       + +K   R     +E   ++
Sbjct: 125 VYIPGCPPTPQGLIYGLLELQRKIREKKVTRYEKAFEEFKKDL 167


>UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=Bacteria
           RepID=NUOB2_CHLT3
          Length = 195

 Score =  185 bits (469), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA 79
              + +   ++L   + S  ++ +  G    C IE+ AT +  +D ERFGI    SPR +
Sbjct: 11  GGVVITAAENVLNWARLS-SLWPMGFG-LACCAIEMMATNASNYDLERFGIFPRSSPRQS 68

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD-LYCVWGGTDKIVPV 138
           D+++  G VT  M    +R ++  P+P+  +S G+C N GG + +  Y V  G D+I+PV
Sbjct: 69  DLMIVAGTVTFKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVVKGVDRIIPV 128

Query: 139 DVYIPGCPPTPAATLYGFAMALGLL-EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           DVY+PGCPP P A + G      L+ E+K        ++    + +     + + V+   
Sbjct: 129 DVYVPGCPPRPEALIGGLMKVQELIREEKFAGDRREAIERLKPKKVK---AEDVIVETSA 185

Query: 198 EARRL 202
            A++L
Sbjct: 186 SAKKL 190


>UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=Bacteria
           RepID=NUOB2_ACIBL
          Length = 202

 Score =  184 bits (468), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRH 78
           +++        +    R + V+ +  G    C IE+    +  +D  RFG +   PSPR 
Sbjct: 9   EKNFLLSSVDYVFNWARKSSVWPMTFG-LACCAIEMITASTARYDIARFGSEVFRPSPRQ 67

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           +D+++  G VT  M     R ++  P+PK  ++ GAC + GG F + Y    G DKIVPV
Sbjct: 68  SDLMIVAGTVTLKMAPVVQRIYEQMPEPKWVMAMGACASVGGPF-NTYATLQGVDKIVPV 126

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
           DVY+ GCPP P    YG       ++    A+ P ++     E +  +  + +R+  
Sbjct: 127 DVYVVGCPPRPENLFYGLLKLQDKIDHMTLAKRPTDVRLD--ETMLDEFRKSVRIAQ 181


>UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A8Z3_GEMAT
          Length = 212

 Score =  184 bits (468), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 3/189 (1%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG 69
           +    V     +   + +   L    R+  ++ +  G    C IE  AT +  FD  RFG
Sbjct: 13  SAITHVDAGGHDGWITTRLDFLVNWGRAGSLWPMPFG-TACCAIEFMATAASRFDLSRFG 71

Query: 70  IK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           ++ +  SPR AD+LL  G V   +     R +Q  P PK  IS GAC ++GG+F D Y V
Sbjct: 72  MERLSYSPRQADVLLCAGRVPLKLAPVLRRIYQQMPQPKWVISMGACASTGGMF-DNYAV 130

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMV 188
             G D I+PVDVY+PGCPP P A ++   M    + Q+        ++  P       + 
Sbjct: 131 VQGIDTIIPVDVYVPGCPPRPEALMHAIIMLQKKVMQERLKDSTRHVEIDPDPTSQLYIP 190

Query: 189 QPLRVKVDR 197
                ++  
Sbjct: 191 PSRIDELSE 199


>UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-like) n=1
           Tax=uncultured methanogenic archaeon RC-I
           RepID=Q0W2C0_UNCMA
          Length = 247

 Score =  184 bits (468), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 98/159 (61%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG 69
           A+       V+ S   ++  + K   RS  +  VD G CNGCE+E+ +  + ++D ERFG
Sbjct: 89  ASKAKPDFDVESSGRELEKKIKKAFGRSLAIREVDAGSCNGCEVEVNSLSNAIYDIERFG 148

Query: 70  IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
           + +V SPRHAD LL TG VTR M    ++++ + PDPK+ I+ GAC  +GGIF D Y V+
Sbjct: 149 LHIVASPRHADALLVTGPVTRNMERGLMQSYNATPDPKMVIAMGACAITGGIFRDSYAVY 208

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
            G D +VPVDVYIPGCPP P A + G  +A+   E+K  
Sbjct: 209 NGVDALVPVDVYIPGCPPRPQAIIQGIMLAIDRWEEKRK 247


>UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=pseudomallei group
           RepID=A5TDF9_BURMA
          Length = 293

 Score =  184 bits (467), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 2/172 (1%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           ++    P      P+ +  D  I +   + +    +   ++ +  G    C +E+     
Sbjct: 118 VTGSSTPFGMANHPLTLEKDGFIVTTLDAAM-AAAQKNSLWYMTFG-LACCAVEMMHAAG 175

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
             +D +RFG+    SPR  D+++  G +T  M     R +    +P+  +S G+C N GG
Sbjct: 176 ARYDMDRFGMIPRASPRQCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGG 235

Query: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
            +H  Y V  G D+IVPVDVY+PGCPPT  A +YG       + ++     P
Sbjct: 236 YYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLMQLQRKVAERSTHSRP 287


>UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=9 Tax=Bacteria
           RepID=B2IID4_BEII9
          Length = 177

 Score =  184 bits (467), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 84/160 (52%), Gaps = 1/160 (0%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF 63
           L  P      P    +    A +      ++ RS  +  VD G CNGCE+EI A  +  +
Sbjct: 9   LAKPPLTEAGPTDGEIAALAAELDHLARSRLGRSLAIREVDAGSCNGCELEINALGNAFY 68

Query: 64  DAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH 123
           D ERFG++ V SPRHAD+LL TG VT  MR   LR + + P+PK  ++ G C    G+F 
Sbjct: 69  DLERFGLRFVASPRHADVLLVTGPVTHNMREALLRTYDATPNPKWVVAAGTCALGEGVFA 128

Query: 124 DLYCV-WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
           + Y    GG   ++ VD+YIPGCPPTP   L G    +  
Sbjct: 129 ESYACQKGGVSAVIAVDLYIPGCPPTPTDLLKGLLALITK 168


>UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NUN9_HALUD
          Length = 183

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 86/156 (55%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           M   +     RS ++  ++CG CNGC+IE    L P +D ERFGI+   +PRHAD+L+ T
Sbjct: 1   MGRIIDWARNRSPWILHMNCGSCNGCDIETLDALMPRYDVERFGIQQKDTPRHADVLVAT 60

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G VT+ M     R ++  P+PK+ I+ G+C  +GG+F D Y    G D ++PVD+Y+PGC
Sbjct: 61  GPVTKQMAPRLERIYEQMPEPKLVIAAGSCAATGGVFQDCYNCHEGIDDVIPVDMYVPGC 120

Query: 146 PPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE 181
           P +P   + G    L    Q+  A        +  +
Sbjct: 121 PISPETLIDGIVALLEEAGQEAKAERLAAAKPEIVQ 156


>UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax=Bacteria
           RepID=NUOB2_STRGG
          Length = 235

 Score =  183 bits (465), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 80/171 (46%), Gaps = 4/171 (2%)

Query: 7   PRDANGIPVPMTVD--ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           P D   +P P  +     +A     ++    R   ++  + G    C IE  A      D
Sbjct: 19  PADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFNFG-LACCAIEFIAASMARHD 77

Query: 65  AERFG-IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH 123
             R G I   P PR AD+++ +G VT  M     R ++  P+PK  IS+GAC N GG + 
Sbjct: 78  FIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNCGGPYW 137

Query: 124 DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           D Y V  G D+I+PVDVY+PGCPP P A L G       + ++  A     
Sbjct: 138 DSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARESLAERYAT 188


>UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=14 Tax=Bacteria
           RepID=B1ZSE5_OPITP
          Length = 279

 Score =  183 bits (465), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 97/158 (61%), Gaps = 4/158 (2%)

Query: 13  IPVPMTVDESIASMKASLLKK----IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
            P      E   ++   L  +    + RS ++  VD G CNGCE+EI A   P++D ERF
Sbjct: 122 APQISETGEKTEALGRELQNRIHSLLGRSLHIREVDAGSCNGCEVEINALSGPIYDLERF 181

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           GI +V SPRHAD+LL TG VTR M     + + + P+P++ ++ GACG SGG+F   Y  
Sbjct: 182 GIHLVASPRHADMLLVTGPVTRNMELALRKTYDATPEPRLVVAVGACGCSGGMFGRNYAT 241

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
            G  D ++PVDVYIPGCPP P A L+G  +A+G LE++
Sbjct: 242 CGSVDSVLPVDVYIPGCPPNPFALLHGILLAVGRLEKR 279


>UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 Tax=cellular
           organisms RepID=NDHK2_CYAP4
          Length = 259

 Score =  183 bits (464), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 1   MSNLLGPR---DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFA 57
           MS  L        +   VP  + E+I       +    R + +Y +  G    C IE  A
Sbjct: 1   MSTPLDHSIRNPISSAEVPPELSENIILTSLDDIYNWARISSIYPLMYG-TACCFIEFAA 59

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            ++  FD ERFG+    SPR AD+++  G +T  M  P  R +   P+PK  I+ GAC  
Sbjct: 60  MIASRFDMERFGMFPRASPRQADLIILAGTLTMQMAVPTRRLYDQMPEPKYVIAMGACMI 119

Query: 118 SGGIF-HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
           +GG+F  D      G DK++P+DVYIPGCPP P A L         +  +       
Sbjct: 120 TGGMFSADSPTALRGADKLLPIDVYIPGCPPRPEAILDAVTKLRKKIANESPQERQN 176


>UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A1ASR2_PELPD
          Length = 179

 Score =  182 bits (463), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 96/153 (62%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             RS +VY  + GGCNGC+IE+   L+P +D ERFGIK+V SPRHAD++L  G   R+  
Sbjct: 10  FGRSLWVYHANSGGCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQGPAMRSTG 69

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               RA+ + P PK+  + G+C   GGI+HD Y V G  +K++PV+ Y+PGCPP P A +
Sbjct: 70  KALQRAYAAMPGPKLVFAIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPGCPPRPEAII 129

Query: 154 YGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
           +G A+A GL+++K       ++ + P    H +
Sbjct: 130 WGVAVAAGLVDKKTAPVEFKQVSDFPMPRYHPE 162


>UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=Fibrobacter
           succinogenes subsp. succinogenes S85 RepID=C9RJJ6_FIBSS
          Length = 211

 Score =  182 bits (461), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 14/203 (6%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHAD 80
           +I +     L    RS  ++    G    C IE  +T    +D  R G +    +PR +D
Sbjct: 9   NIITSSLDFLVNWGRSNSLWPFPYG-TACCAIEFMSTEVGRYDLSRIGSEYVRFTPRQSD 67

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +LL  G +T        R ++   +P+  I+ GAC +SGG F+D YC   G D I+PVDV
Sbjct: 68  VLLVAGTITYKQAPILKRIYEQMAEPRWVIAMGACASSGG-FYDCYCTVPGIDHIIPVDV 126

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
           YI GCPP P A           ++ +          +Q AE +   +   +      EA+
Sbjct: 127 YIGGCPPRPEAFFDAMFDLQKKVKDE-------SFMKQRAESVKEQLE--MIKVKTAEAK 177

Query: 201 RLAGYRYGRQIAD--DYLTQLGQ 221
           R A      ++ D  D++ +  +
Sbjct: 178 REAAACAREKVVDIKDFMKEKQE 200


>UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=54 Tax=cellular
           organisms RepID=B2A054_OPITP
          Length = 338

 Score =  182 bits (461), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/141 (41%), Positives = 85/141 (60%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +  +++S ++   D   CNGC+IE  A L+PL+D ER G+    +P+HADI L TGAV  
Sbjct: 1   MLGLRKSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVINTGNPKHADIFLVTGAVNE 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
             +      +   P+PK+ ++ G C +SGGIF D Y + GG D+++PVDVY+PGC   P 
Sbjct: 61  QSKEVIRNIYHQLPEPKVVVAIGVCASSGGIFRDCYNIAGGVDRVIPVDVYVPGCAARPE 120

Query: 151 ATLYGFAMALGLLEQKIHARG 171
           A + G   ALG+LE+K     
Sbjct: 121 AIIDGVVQALGVLERKQSEMS 141


>UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 Tax=Thermococcus
           RepID=C5A2Q7_THEGJ
          Length = 283

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 34/244 (13%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS YV+ +D G CNGCEIE+F  L+P +DAER G+++  SPRHA  +  TG +TR     
Sbjct: 4   RSLYVFHLDTGACNGCEIELFDILTPYYDAERLGVRLAASPRHAHAMAATGPLTRQAYYA 63

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV---------------WGGT------- 132
           A  A ++  P P+I ++ G C  SGGIF++ Y +                GG        
Sbjct: 64  AKEAIKAMPPKPRIIVAIGTCACSGGIFYNGYPIYRRPESGREGQEYPRRGGIFELVQDL 123

Query: 133 ---DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
               + V   VYIPGCPP P   LYG A+ALGL+E+++      E      E+    + +
Sbjct: 124 RDEGEYVGPVVYIPGCPPRPEEILYGVALALGLVEKQVKGEYYTEEVGF--ELPEYPIEE 181

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQV------ARWLEAENDPRLNEIVS 243
            +R+ +    + + GY    ++ +D++  + + +           +     DPR++  + 
Sbjct: 182 RIRLSLRERLKYVVGYFDREKVLEDFMELVAKAKSAEELHGLIQGYCLKNPDPRVSLAMR 241

Query: 244 HLNH 247
            L  
Sbjct: 242 VLER 245


>UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteobacteria
           RepID=B9L8U0_NAUPA
          Length = 164

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/145 (42%), Positives = 86/145 (59%)

Query: 30  LLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVT 89
             K  K+S ++   + GGCNGC+IEI A L+P +D ERFG+    +P+ +DILL TG VT
Sbjct: 4   FTKFRKKSPWILHYNTGGCNGCDIEILAALAPKYDIERFGMLNRGNPKQSDILLVTGPVT 63

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
           +  R    R +   P+PK+ ++ GAC + GGIF D Y V  G D I+PVDV+IPGC P  
Sbjct: 64  KRCRDVLRRLYLEMPEPKVVVAMGACAHGGGIFRDFYHVENGVDNIIPVDVWIPGCAPRV 123

Query: 150 AATLYGFAMALGLLEQKIHARGPGE 174
            A + G   A+ + E+K   +    
Sbjct: 124 EAVIDGMVEAVKIWEKKTKEKEFMR 148


>UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774
           RepID=B8J1E3_DESDA
          Length = 185

 Score =  181 bits (459), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 88/146 (60%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S ++   DCG CNGC+IE+ A L+P++D ERFG+    +P+HAD+LL TG V    R  
Sbjct: 14  KSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVNAGNPKHADVLLVTGTVNHRNRHV 73

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
             + ++  P PK  IS GAC  SGG+F D Y V  G   ++PVDV++PGCPP P A + G
Sbjct: 74  LKQIYEQMPSPKAVISLGACNLSGGVFKDTYNVLNGAHNVIPVDVFVPGCPPKPEAIIDG 133

Query: 156 FAMALGLLEQKIHARGPGELDEQPAE 181
              ALG+L+ K+      +    P +
Sbjct: 134 VVEALGVLKAKMGMGPVPQATFMPGD 159


>UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A9KS72_CLOPH
          Length = 144

 Score =  180 bits (457), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/141 (43%), Positives = 87/141 (61%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +K +K+S ++   D   CNGC+IE+ A L+PL+D ERFGI    +P+HADILL TG+V  
Sbjct: 1   MKFVKKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADILLITGSVNE 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
                  + ++   +PKI ++ G C NSGGIF + Y V GG DK++PVDVY+PGC   P 
Sbjct: 61  QNIPVVKQIYEQMAEPKIVVAVGICANSGGIFAECYNVSGGVDKVLPVDVYVPGCAARPE 120

Query: 151 ATLYGFAMALGLLEQKIHARG 171
           A + G    L +LE+K     
Sbjct: 121 AIIDGVVKGLAILEEKQKYAR 141


>UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=Actinomycetales
           RepID=NUOB1_SALAI
          Length = 188

 Score =  180 bits (456), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 7/156 (4%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
           VP  + E I       +    R   ++  + G    C IE  AT     D  R G+    
Sbjct: 3   VPAVLGEPIR-----FVLNWGRRYSLWVFNFG-LACCAIEFIATSMSRHDFMRLGVIPFA 56

Query: 75  S-PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
             PR AD+++ +G VT  M     R +   P+PK  IS+GAC N GG + D Y V  G D
Sbjct: 57  HGPRQADLMVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVD 116

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
           +++PVDVY+PGCPP P A L+G       +  +   
Sbjct: 117 QLIPVDVYVPGCPPRPEALLHGILRLQEKIAAEGAG 152


>UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=Desulfotomaculum
           acetoxidans DSM 771 RepID=C8W241_DESAS
          Length = 236

 Score =  180 bits (456), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 97/159 (61%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           +G  +   +  P + ++   +++  + K   RS ++  VD G CNGC+ EI +  +P++D
Sbjct: 78  IGETEVPVLTAPASAEDLGRALREKIKKICHRSLHIRYVDAGACNGCDFEINSMTNPVYD 137

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD 124
            +++G+  V SPRHAD+LL TG VTR +     + +++ P P + ++ GAC   GG+F +
Sbjct: 138 IQQYGVDFVASPRHADMLLVTGVVTRNLEIALHKTYEACPRPALVVAVGACACGGGVFKE 197

Query: 125 LYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            Y   GG DK +PVDVY+PGCPPTPA  + G   A+G L
Sbjct: 198 AYASGGGVDKFLPVDVYVPGCPPTPAQIIKGILTAIGRL 236


>UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=Sphingobacteriales
           RepID=C7PSH0_CHIPD
          Length = 187

 Score =  179 bits (455), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 3/174 (1%)

Query: 6   GPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA 65
             +  +         E   +     +  + R   ++ +     + C IE  AT++  +D 
Sbjct: 8   NEKVKSVAVPEGYSGEGFFATTFDQVIGLARKNSIWPLPFA-TSCCGIEFMATMASTYDM 66

Query: 66  ERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD 124
            RFG + +  +PR  D+L+  G +++ M     + +    +P+  ++ GAC +SGG+F D
Sbjct: 67  SRFGSERMAFTPRQCDLLMVMGTISKKMAPVLRQVYLQMAEPRWVVAVGACASSGGVF-D 125

Query: 125 LYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
            Y V  G D+++PVDVY+PGCPP P A + GF     L+ Q+   R   +  ++
Sbjct: 126 TYSVLQGIDQVIPVDVYVPGCPPRPEAIIDGFMRVQDLVGQESLRRRHSDKYKE 179


>UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=Thermoproteaceae
           RepID=A8MBS9_CALMQ
          Length = 374

 Score =  179 bits (455), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 95/237 (40%), Gaps = 18/237 (7%)

Query: 5   LGPRDANGIPVP-MTVDESIASMKASLLKK-IKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           +G    N + +   ++   I  +  SL     K S +   +       C +E     +P 
Sbjct: 1   MGDTTVNTLKITLKSIGMDIKLLPDSLASWGTKFSIWPAHLVT---ACCGVEFAHASAPG 57

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +DAER+G   +  PR  + ++  G VTR M      A++  P PK  I+ G+C   GG+F
Sbjct: 58  YDAERWGFLPIFGPRQTNSIVIEGTVTRKMARIVKTAYEQMPYPKFVIAMGSCAMEGGVF 117

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE-----QKIHARGPGELDE 177
            + Y V    ++IVPVD ++ GCPPTP A +    M    +E       I          
Sbjct: 118 WNSYHVVR-VNEIVPVDAWVMGCPPTPEAVIRAIRMVQSKIEGKEVKPNIRPNPVDLSKV 176

Query: 178 QPAEILHGDMVQPLRVKVDR-------EARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
              +        P R++ +        +      +  G+++ D +   L  G +  A
Sbjct: 177 LKPDKPQRPPNPPHRIEFELIKDINVCKPAANVKWELGQKLIDGFKESLKDGVKNTA 233


>UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometricum borinquense
           DSM 11551 RepID=C1VB41_9EURY
          Length = 236

 Score =  179 bits (454), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 5/179 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADI 81
           I +   + +  ++ S  ++ +  G    C IE+  T S   D +RF       SPR AD+
Sbjct: 48  ILTKFDNFMNWVRGS-SMFMLQFG-IACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADV 105

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G +         R +   P+PK  +  G+C  SGG F + Y V  G ++++PVD++
Sbjct: 106 IIVPGTIVSKFAPRMKRVYDQMPEPKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIH 165

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP--AEILHGDMVQPLRVKVDRE 198
           +PGCPP P A +YG A     + +   +    +  E     ++   +++  L  ++D E
Sbjct: 166 VPGCPPRPEALIYGVAKLQQRIAEGESSPVTVKPYELEQFGDLEQDELIDHLADQIDEE 224


>UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular
           organisms RepID=NUBCD_PELCD
          Length = 794

 Score =  179 bits (454), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPS 75
            ++ ++I            R   ++ +  G  + C +E+  +++P FD  RFG + +  +
Sbjct: 3   ESIPKNIILTTLDDAINWGRKNSMWPMFFG-LSCCFVEMMGSMTPRFDLARFGAEVLRGT 61

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G   + M +  LR ++   +PK  I+ G+C NSGG++ D+Y V  G +++
Sbjct: 62  PREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCANSGGMY-DVYSVMQGVNQV 120

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           +PVDVYIPGCPP P A + G       + +K     P
Sbjct: 121 LPVDVYIPGCPPRPEAFMQGLMTLQEKIARKESPARP 157


>UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax=Bacteria
           RepID=NUOB2_OPITP
          Length = 191

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           M +L+     +   +P  V +     K   L  + R+  ++ +  G    C IE+ A   
Sbjct: 14  MPSLVAATGPSTPEIPPEVSQIARFAKLDDLLALGRANSLWPLTFG-LACCAIEMMAAGM 72

Query: 61  PLFDAERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
             FD  RFG +   PSPR AD+++  G V + M       +    +PK  I+ G C  SG
Sbjct: 73  ARFDISRFGAEVFRPSPRQADVMIVAGTVNKKMAPAVKLLYDQMLEPKWVIAMGQCAISG 132

Query: 120 GIF--HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           G F     Y V  G D++ PVDVY+PGCPP P A + G       +  K  
Sbjct: 133 GPFKYPGQYAVVEGVDQLFPVDVYVPGCPPRPEALIEGILKLEEKITGKRR 183


>UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=cellular organisms
           RepID=NUOB_DEIGD
          Length = 178

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHA 79
           E +       L    RS  ++    G    C IE+ ++     D  RFG +    SPR A
Sbjct: 17  EGVLFSTLEKLVAWGRSNSLWPATFG-LACCAIEMMSSTDGRNDLSRFGSEVFRASPRQA 75

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+++  G +++ M     R +   PDPK  IS GAC +SGG+F + Y V    D +VPVD
Sbjct: 76  DVMIVAGRLSKKMAPIMRRVYDQMPDPKWVISMGACASSGGMF-NNYAVVQNVDHVVPVD 134

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           V++PGCPP P A +Y        +  + +     +L    A
Sbjct: 135 VFVPGCPPRPEALIYAVMQLQKKVRGEAYDARGEQLPMVEA 175


>UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=Dehalococcoides
           RepID=NUOB_DEHSC
          Length = 200

 Score =  177 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 2/156 (1%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPS 75
                 +       +    R   ++ V  G    C IE+    +  +D  RFG+     S
Sbjct: 46  EEPPPGVFITSVEKVLNWSRHYSLWPVMFG-LACCAIEMMCMAASRWDLARFGMDIFRAS 104

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G +T  M     R +   P+PK  ++ GACG SGG+F D Y V  G + +
Sbjct: 105 PRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMGACGTSGGLFRDSYSVVPGFNLV 164

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           VPVDVY+PGCPP P A +         +++    + 
Sbjct: 165 VPVDVYVPGCPPRPEALMRAIMDIHEKIDKTRILKR 200


>UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Geobacter
           metallireducens GS-15 RepID=Q39SF9_GEOMG
          Length = 244

 Score =  177 bits (449), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 79/152 (51%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
           +  P +       +   L +   RS     V  GGCN CE +     +  +D  RFGI+ 
Sbjct: 92  LVHPGSEHHHARPLPPDLRRLFGRSLKFREVSAGGCNACEADTNVLSTIGWDLGRFGIQF 151

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
           V SPRHAD L  TG VT  M    L  +++ PDPKI ++ GAC  +GG + D   V  G 
Sbjct: 152 VASPRHADGLWVTGPVTEHMAKALLTTYEAIPDPKIVVACGACAINGGPYIDTPQVCNGV 211

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           D IVPVD+YIPGCPP PA  L G    L  ++
Sbjct: 212 DSIVPVDLYIPGCPPHPATILDGLLRILNKIK 243


>UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=A6UVJ5_META3
          Length = 246

 Score =  176 bits (447), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 65/144 (45%), Positives = 84/144 (58%)

Query: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
           T+ E   S   S+ K   +S Y+  V  GGCN C+ +I    +P++D  RFGIK V SPR
Sbjct: 103 TLKEPDTSSLKSIKKLFGKSVYLREVCAGGCNACDADINVLNTPVYDLSRFGIKFVASPR 162

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
           HAD L+ TG VT+ M    ++ + + P PK  I+ G C  SGGIF +   V GG DKI+P
Sbjct: 163 HADGLVITGPVTKNMELALMKTYDATPSPKFVIAVGTCAISGGIFRENEEVVGGVDKILP 222

Query: 138 VDVYIPGCPPTPAATLYGFAMALG 161
           VD+YIPGCPP P   LY F     
Sbjct: 223 VDLYIPGCPPHPFTNLYAFVKFFK 246


>UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           carboxidivorans P7 RepID=C6PUG1_9CLOT
          Length = 242

 Score =  176 bits (447), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 86/143 (60%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +K  +  K KRS  +  VD G CNGC +E+  T +  +D  R+GIK   SPRHAD ++
Sbjct: 100 QEVKEKIYSKFKRSLVLRSVDTGSCNGCMMEVSNTQNTYYDLSRYGIKFAASPRHADGIV 159

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG VT  M+   ++ + +  DPKI I+ G+C  SGGIF D Y V    ++I+ V++ IP
Sbjct: 160 VTGPVTLNMKEALIKTYDAISDPKIVIAVGSCAYSGGIFKDGYSVCEDLNEILKVNLVIP 219

Query: 144 GCPPTPAATLYGFAMALGLLEQK 166
           GCPP+P A LYG    +  L+++
Sbjct: 220 GCPPSPQAILYGMLKIINKLDEE 242


>UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 Tax=Halobacteriaceae
           RepID=B0R3U2_HALS3
          Length = 235

 Score =  176 bits (446), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 5/179 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHADI 81
           I +     +  ++ S  ++ +  G    C IE+  T S   D +RF       SPR AD+
Sbjct: 47  ILTKFDKFMNWVRGS-SMFMLQFG-IACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADV 104

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G +         R +   P+PK  ++ G C  SGG F + Y V  G ++++PVD++
Sbjct: 105 MIVPGTIVSKFAPRMKRVYDQMPEPKFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIH 164

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP--AEILHGDMVQPLRVKVDRE 198
           IPGCPP P A +YG A     +     +    +  E     ++   ++V  L   +D E
Sbjct: 165 IPGCPPRPEALVYGVAKLQERIANGESSPVTVKPYELEEFGDLERDEIVDKLAADIDEE 223


>UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd subunit n=1
           Tax=uncultured marine microorganism HF4000_APKG10H11
           RepID=B3TC56_9ZZZZ
          Length = 182

 Score =  176 bits (445), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 57/176 (32%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKK---IKRSAYVYRVDCGGCNGCEIEIFA 57
           M N+L P     I   +    ++A  K  L+KK     R   ++ V       C  E  A
Sbjct: 5   MKNIL-PDGTKTIVQDIVDGVNVAIKKVPLVKKLITWGRKNSLWVVHLT-TGCCSPEFAA 62

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
                +D ERFG  V+ + R  DIL+  G V   M     R +   PDPK  I+ G C  
Sbjct: 63  LAGAGYDMERFGPLVMAAMRQCDILIIEGQVADKMAEVVKRTYDQMPDPKYVIAVGNCAI 122

Query: 118 SGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
           SGG + D Y +  G DKI+PVDVY+PGCPP P   +    +    ++++   R   
Sbjct: 123 SGGFYWDSYSMVMGIDKIIPVDVYVPGCPPRPEDWIDAIRLVQTRMDKEGLDRERP 178


>UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=7 Tax=Trypanosomatidae RepID=NDUS7_TRYBB
          Length = 202

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 12  GIPVPMTVDESIASMKASLLKK-IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI 70
           G   P    +        L +  +  S +       G   C +E+    +  +D +RFGI
Sbjct: 41  GTSKPNNALQYAQMTLHDLTEWCLAYSPWPLTF---GLACCAVEMMHAYASRYDLDRFGI 97

Query: 71  KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
              P+PR A+I++ +G VT  M       +    +PK  IS G+C N GG +H  Y V  
Sbjct: 98  VPRPTPRQAEIIIVSGTVTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLR 157

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           G ++ +PVD +IPGCPP+  + ++        + 
Sbjct: 158 GCERAIPVDFWIPGCPPSAESLVFCLHTLQKKIR 191


>UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=Planctomycetaceae
           RepID=D2R5G9_9PLAN
          Length = 192

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 5/173 (2%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPR 77
           + E++   K   L    R   ++ +       C IE+ AT +   D  RFG +    SPR
Sbjct: 5   LPENVMVTKLDELANWCRKNSLWPMPFA-TACCGIELMATGASRHDLARFGAEVFRFSPR 63

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
             D+++  G V   M     R WQ   +PK CIS GAC ++GG+F D Y V  G D+ +P
Sbjct: 64  QCDLMIVAGRVVMKMLPVLQRIWQQMHEPKWCISMGACASTGGVF-DTYAVVQGIDRFIP 122

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQK--IHARGPGELDEQPAEILHGDMV 188
           VD+Y+PGCPP P             ++++  I          Q  +    ++ 
Sbjct: 123 VDMYVPGCPPRPEQLTQAIIDLQDKIQREGTITGEEFETAARQERKRALQELP 175


>UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=cellular organisms
           RepID=C9RKY2_FIBSS
          Length = 419

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 16/206 (7%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           L P+  + IP    V  +I       +    R+  ++ +  G  + C IE+ ++    +D
Sbjct: 6   LAPKILDPIPGGKYVVNAI-----DYVVNWARANSIWPLTYG-TSCCAIEMMSSSMARYD 59

Query: 65  AERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF- 122
             RFG +    SPR AD+ +  G +TR M       W+  P PK  I+ GAC  SGG F 
Sbjct: 60  IARFGSEVFRSSPRQADLFILAGTITRRMAPAIQMLWEQIPGPKYVIAMGACTISGGPFI 119

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI--------HARGPGE 174
           +D Y V  G   ++PVDV++PGCPP P A  +G       + ++           +    
Sbjct: 120 YDNYSVVRGAQNLIPVDVFVPGCPPRPEALFHGLLTLREKILKETCRNPWHEGEPKDVST 179

Query: 175 LDEQPAEILHGDMVQPLRVKVDREAR 200
           +D           ++ ++ +   EAR
Sbjct: 180 MDRYREAAKTWAALEEMKDEQMAEAR 205


>UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydrogenasei, chain b)
           (Ndh-1, chain b) n=1 Tax=Persephonella marina EX-H1
           RepID=C0QR84_PERMH
          Length = 181

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 4/173 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           + +++  L    + S +   V   G   C IE+  T +  FD +R GI    SPR +D+L
Sbjct: 11  LTTVEEVLSWGRRNSLWPASV---GLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSDVL 67

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           +  G V   +       +   PDPK  I+ G C ++GG F   Y    G D+I+PVDVY+
Sbjct: 68  IVAGTVVNKVAPMLKLIYDQMPDPKWVIAMGGCSSAGGPFP-TYATLQGVDRIIPVDVYV 126

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
           PGCPPTP A L+G       ++ K   +   E+  +        +    +  +
Sbjct: 127 PGCPPTPQALLWGILELQKKIKAKKEGKVWEEIPVREVPTASQPIPIKEKSPL 179


>UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=Proteobacteria
           RepID=NUOB2_RHOS1
          Length = 205

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 9/211 (4%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           MS  +G R     P        + +    L+    R   ++  + G  + C +E+   L+
Sbjct: 1   MSWTIG-RPDAEAPEDRMAASHLFTRLDDLVAW-SRKHSLWPFNFG-LSCCYVEMATALT 57

Query: 61  PLFDAERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
           P++D  RFG + +  +PR AD+L+ +G V R M  P  R +    +P+  IS GAC NSG
Sbjct: 58  PVYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSG 117

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
           G++ D+Y V  G D  +PVDVY+PGCPP P A +    +    +  +        + E  
Sbjct: 118 GMY-DIYSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKIATEARPLQI-RMGETG 175

Query: 180 AEILHGDMVQPLRVKVDREARRLAGYRYGRQ 210
                  + +       REAR         +
Sbjct: 176 PARPFDPIPRR---DALREARMAVTRLADPE 203


>UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=cellular
           organisms RepID=A7I7C9_METB6
          Length = 172

 Score =  174 bits (441), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 1/168 (0%)

Query: 1   MSNLLGPRDANGIPVPMTVDESI-ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATL 59
           +S +LG +    +PV     E I   ++  +  +  RS  +  +D G  N  EIEI    
Sbjct: 5   VSCMLGKKVTGPLPVRDEELERIGREIRREINARFGRSLAIRELDAGSDNAAEIEINNLS 64

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
           +  +D ERFGI  V SPRHAD+LL TGA+T  M   A + + + P PK  ++ G     G
Sbjct: 65  NAYYDVERFGISFVASPRHADVLLVTGAITCNMAIAAQKTYDAMPSPKFVVAVGDDACDG 124

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
           GI+   Y V GG D I PVD+ IPG PP P   L G    +    ++ 
Sbjct: 125 GIYKGTYAVLGGADAIFPVDLKIPGNPPAPIQILTGLLALMRSAGKRT 172


>UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=Bacteria
           RepID=NUOB1_OPITP
          Length = 171

 Score =  173 bits (439), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK- 71
           +     ++  I   KA  +    R+  ++ +  G    C IE+    +  FD  RFG + 
Sbjct: 8   LTYSSAIEGGIVVSKADAVINWIRTNSMWPMPMG-LACCAIELMQVGNGRFDIARFGAEV 66

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
           +  SPR +D ++  G+VT  M     R +     PK  I+ GAC +SGG++   Y    G
Sbjct: 67  MRFSPRQSDCMIVAGSVTYKMAPQIRRIYDQMMSPKWVIAMGACASSGGMYR-SYAHMQG 125

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
            D+I+PVDVYI GCPP P   L         +  +   +  
Sbjct: 126 VDRILPVDVYISGCPPRPEGILDALMKLQAKIRTERAGQNL 166


>UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGC1_9EURY
          Length = 172

 Score =  173 bits (439), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 5/157 (3%)

Query: 17  MTVDESIASMKASLLK---KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
             + E +       +       RS  ++ +  G  + C IE+    +   DA+R G+   
Sbjct: 10  PGLYEVVFMKAEKFINTVLNWGRSNSLWPLTFG-TSCCAIEMMTFGATKVDADRLGVLFN 68

Query: 74  P-SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
             SPR +D++L +G +T+ M    L  ++  PDPK  I+ GAC  SGG++HD Y    G 
Sbjct: 69  GDSPRQSDLILVSGTITKKMARRLLNVYEQIPDPKYVIAVGACNVSGGLYHDSYNTIEGI 128

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
           D+I+PVD +IPGCPP P   L    +   L+++    
Sbjct: 129 DRIMPVDAFIPGCPPRPEEFLDAVRVLQKLIKENRSK 165


>UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_SORC5
          Length = 194

 Score =  173 bits (439), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 4/178 (2%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRH 78
           +   A+ +   L    +   +++        C +E  A  SP FD  RFG +    SPR 
Sbjct: 18  EHGFATTRVDALLNWAKKYSLFQYPF-VTACCGMEYMAMASPRFDMARFGAEVPRFSPRQ 76

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           AD+L   G +++       R ++   DPK  +++G C + GG F+D Y    G DK++P 
Sbjct: 77  ADLLWVVGTISQRQAPALKRIYEQMADPKWVLAFGTCASCGG-FYDNYTTVAGIDKVIPC 135

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE-ILHGDMVQPLRVKV 195
           DVY+PGCPP P A L G  +    + +        +  E PA+   H   +Q     +
Sbjct: 136 DVYVPGCPPRPEAVLDGLMLLQDKIARGDRTPAIVKPREDPAQTTEHLVTLQRKERSL 193


>UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
           ATCC 25986 RepID=A4EBM2_9ACTN
          Length = 195

 Score =  173 bits (438), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/144 (41%), Positives = 81/144 (56%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
           K+ RS +V   D   CNGC+IE+ A+L+PLFDAERFG+    +P+HADI L TG+V    
Sbjct: 4   KMSRSPWVIHYDGSSCNGCDIEVLASLTPLFDAERFGVVNTGNPKHADIFLVTGSVNAQN 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAAT 152
                + +    +PK  ++ G C  SGG+F D Y V GG D+ +PVDVY PGC   P   
Sbjct: 64  LPVVRQIYNQMLEPKCVVACGICACSGGVFRDAYNVIGGVDRAIPVDVYAPGCAIRPETV 123

Query: 153 LYGFAMALGLLEQKIHARGPGELD 176
           +     A G+L+QK      G   
Sbjct: 124 IDAIVEACGILDQKEAVMRAGGDP 147


>UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GAA3_9ACTN
          Length = 228

 Score =  173 bits (438), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 77/148 (52%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            +S ++   D   CNGC+IE+  ++ PL+D ERFGI    +P+HADI L TG+V      
Sbjct: 5   SKSPWLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINTGNPKHADIFLVTGSVNAQNIE 64

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
                +    +PK+ ++ G C  +GG+F D Y V GG DK +PVDVY PGC   P   + 
Sbjct: 65  VVRHIYDQMLEPKVVVACGICACTGGVFRDCYNVIGGVDKAIPVDVYAPGCAVRPETIID 124

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEI 182
               A+ +L++K      G+        
Sbjct: 125 AVLKAVEILDEKAKLMAAGKDPATAPRK 152


>UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=Nitrosopumilus
           maritimus SCM1 RepID=A9A345_NITMS
          Length = 174

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 3/172 (1%)

Query: 1   MSNLLGPRDANG-IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATL 59
           + +L+ P +AN  +     + E              R   ++ V       C +E  A  
Sbjct: 2   LKDLVTPENANVFVGKLGDILEKAIDKPLGYAINWGRIWSLWPVHI-ETACCSVEFGAAS 60

Query: 60  SPLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
           SP +D ERFGI +   S R  D+++  G +TR M       +   P+PK  I+ GAC  +
Sbjct: 61  SPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAIT 120

Query: 119 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           GG++ D Y V  G D ++PVDVY+PGCPP P   + G  +    +++    +
Sbjct: 121 GGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCILLQEKIKRMKARK 172


>UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria RepID=A3THJ2_9MICO
          Length = 198

 Score =  172 bits (435), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPR 77
           +           +    R A ++    G    C IE+ A  +P +D  RFG++    +PR
Sbjct: 7   LPAGFVLTTLESVAGYMRKASIWPATFG-LACCAIEMMAVGTPDYDIARFGMERFSATPR 65

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+++  G V+  M     + +   P+PK  IS G C +SGG+F + Y +  G D I+P
Sbjct: 66  QADLMIVAGRVSNKMAPVVRQVYDQMPNPKWVISMGVCASSGGMF-NNYAIVQGVDHIIP 124

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLE 164
           VD+Y+PGCPP P   L         ++
Sbjct: 125 VDIYLPGCPPRPEMLLNAIIELHDQIQ 151


>UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=cellular organisms
           RepID=NUOB_LEPBA
          Length = 186

 Score =  171 bits (434), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 10  ANGIPVPMTV-DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
              +  P  +  +         + +  +S  ++         C IE  +T    +D  RF
Sbjct: 4   TETLSKPGEMFGDMFQVATLDNVVQWGQSFSLWPYPFA-TACCGIEYMSTACADYDIARF 62

Query: 69  GIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
           G +    SPR AD++L  G +T  M     + +    +PK  IS GAC +SGG+FH  Y 
Sbjct: 63  GAERPSFSPRQADMILVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMFH-TYG 121

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM 187
           V  G D+I+PVDVY+PGCPP P A L         ++ +       E+  +  EI   + 
Sbjct: 122 VLQGVDRILPVDVYVPGCPPRPEAILDALVKLQKKVQSQGLEARRQEVMRKIEEINERNK 181

Query: 188 V 188
            
Sbjct: 182 P 182


>UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=Thermoprotei
           RepID=A1RZ48_THEPD
          Length = 171

 Score =  170 bits (431), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 1   MSNLLGPRDANGI--PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAT 58
           MS  LG      +           +       L+    +  ++ V     + C  E  AT
Sbjct: 1   MSCPLGFVMVGRLEESARKAAQWLVEKTPIRSLRDWAITFSLWPVHFT-TSCCGAEFAAT 59

Query: 59  LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
            +P FDAERFG     SPR  ++++  G +T+ M   A   +   P PK  I+ GAC   
Sbjct: 60  SAPRFDAERFGFLPFNSPRQTNLMVIEGTLTKKMGEAAKIVYDQMPWPKFVIAMGACAID 119

Query: 119 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           GG+F++ Y +      I+PV+ +IPGCPP P A      M    + +
Sbjct: 120 GGLFYNSYNIVRP-KDILPVEYFIPGCPPRPEAVAQAIIMLQEKVRK 165


>UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Proteobacteria RepID=Q12F15_POLSJ
          Length = 181

 Score =  170 bits (431), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/150 (40%), Positives = 83/150 (55%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           I  +   +L  + ++  +  VD G CNGCE+EI A  +P ++ E  GIK V SPRHAD+L
Sbjct: 29  IERIHRDILLILGQALTIRAVDAGSCNGCELEIHALNNPYYNIEGLGIKFVASPRHADML 88

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           L TG V+R M     R + + P+PK+ ++ G CG +GGIF D Y   G    ++PVDV +
Sbjct: 89  LVTGPVSRHMDEALRRTYDATPEPKLVVAVGDCGCTGGIFGDSYASCGRVANVIPVDVTV 148

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           PGCPP P   L G   A+           P
Sbjct: 149 PGCPPPPIEILRGILTAVRQRRPGTAGDNP 178


>UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI98_9EURY
          Length = 206

 Score =  169 bits (429), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 2/154 (1%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVT 89
           + K  RS  ++ +  G    C IE+    +   DAER G      +PR  D+++  G VT
Sbjct: 50  VVKWSRSNSMWPMLFG-LACCAIELMDFGAARIDAERKGYLLFRGTPRQCDVMIVAGWVT 108

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
           ++M     R ++    PK  ++YG C  +GG +++ Y +  G D+++PVDVY  GCPP P
Sbjct: 109 KSMVPRVKRLYEQMASPKYVVAYGECATAGGPWYESYNIVKGIDQVLPVDVYAIGCPPKP 168

Query: 150 AATLYGFAMALGLLEQKIHARGPGELDEQPAEIL 183
                        +  K+       + E P    
Sbjct: 169 ENLFAALMKLQEKVGGKVAGSEERTIAENPRRAE 202


>UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=2 Tax=Bacteria
           RepID=UPI00016C3AA7
          Length = 201

 Score =  169 bits (429), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 3/142 (2%)

Query: 25  SMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILL 83
                 L  + R   ++ +       C IE+ AT S  +D  RFG + +  SPR  D+++
Sbjct: 12  IAPLDYLANMARKHSLWPMPFA-TACCGIELMATASSRYDIARFGSEAMRFSPRQCDVMI 70

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
             G V   M     R W   P+PK CIS GAC +SGG+F D Y V  G D+ +PVDVY+P
Sbjct: 71  VAGRVAMKMVPVMQRIWLQMPEPKWCISMGACASSGGVF-DTYAVVQGIDRFIPVDVYVP 129

Query: 144 GCPPTPAATLYGFAMALGLLEQ 165
           GCPP P   +         +++
Sbjct: 130 GCPPRPEQLIRAVLDLQEKIQK 151


>UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Tax=Thaumarchaeota
           RepID=A0RY66_CENSY
          Length = 160

 Score =  169 bits (429), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRHA 79
           E              R   ++ V       C +E  A   P +D ERFGI +   S R  
Sbjct: 9   EKAIDKPLGYAINWGRIWSLWPVHI-ETACCSVEFGAASGPKYDVERFGIIEAFGSLRQC 67

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+++  G +TR M       +   P+PK  I+ GAC  +GG++ D Y V  G D ++PVD
Sbjct: 68  DLIVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPVD 127

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           VY+PGCPP P   + G  +    +++    +  
Sbjct: 128 VYVPGCPPRPETLIQGCMLLQEKIKRMRARKEV 160


>UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea RepID=A0B811_METTP
          Length = 190

 Score =  169 bits (429), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 1/166 (0%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           P           + + I       +    R   ++ +       C +E+     P +D +
Sbjct: 26  PVMDVWFTTTEKIHQIIQMGPIKNVLNWGRKNSLWFL-MQPMGCCGVEMLVFGCPHYDCD 84

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           RFGI    +PR AD+++ +G +TR         W+   +PK CI+ G C  SGG F+D Y
Sbjct: 85  RFGIIPRATPRQADVMIISGYITRKYLPAIKNLWEQMLEPKWCIAVGECAISGGPFYDSY 144

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
            +   T    P+DVY+PGCPP P   + GF      ++Q+   RG 
Sbjct: 145 NIIQNTSDFFPIDVYVPGCPPRPEQFIKGFVELQEKIKQRKDKRGY 190


>UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=Bacteria
           RepID=NUOB_BLOPB
          Length = 236

 Score =  169 bits (429), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 30  LLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAV 88
            +    R   ++  + G  + C +E+    + + D  RFG + +  SPR AD ++  G  
Sbjct: 49  KIVNWGRGNSLWPYNFG-LSCCYVEMTTAFTAIHDVARFGSEVLRASPRQADFMVIAGTP 107

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPT 148
              M     R +    +PK  IS GAC NSGG++ D+Y V  G DK +PVD+YIPGCPP 
Sbjct: 108 FLKMVPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDLYIPGCPPR 166

Query: 149 PAATLYGFAMALGLLEQKIHA 169
           P A + G  +    + ++   
Sbjct: 167 PEAYIQGLLLLKKSINEERRP 187


>UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japonica Group
           RepID=C7IWD0_ORYSJ
          Length = 379

 Score =  169 bits (428), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 2/176 (1%)

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
              FD +R+G+    SPR AD++L  G VT  M    +R ++  P+PK  I+ GAC  +G
Sbjct: 150 GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 209

Query: 120 GIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           G+F  D Y    G DK++PVDVY+PGCPP P A +      L  L   + A      + +
Sbjct: 210 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLL-GLALNLRAYDFVSQEIR 268

Query: 179 PAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEN 234
            AE    +      + ++   R     +        +  +L +  E         +
Sbjct: 269 AAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEELIRVSEFYGPTGPEAS 324


>UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=Thermoprotei
           RepID=A2BJ94_HYPBU
          Length = 209

 Score =  169 bits (428), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 25  SMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
            +K+ L   I  S +   +     + C  E  A   P +D+ER G      PR+ ++LL 
Sbjct: 32  PIKSLLDWGISFSLWPVHLTT---SCCGAEFAAVYDPKYDSERLGSLPFTHPRNTNVLLV 88

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            G +TR M   A   W+  P PK  I+ GAC  +GGIF++ Y +    ++I+PVD Y+PG
Sbjct: 89  EGTLTRKMARAARLVWEQMPWPKFVIAMGACAITGGIFYNSYNIVR-VNQILPVDYYVPG 147

Query: 145 CPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAG 204
           CPPTP A           + +          + +P +I     ++ L      +ARR   
Sbjct: 148 CPPTPEAVANALIKLQEKVRKG---------EWKPRDIEDKKFLEELMAPHYEKARRHLE 198

Query: 205 YRYGRQIADD 214
                Q  + 
Sbjct: 199 LLARTQRTER 208


>UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_SALRD
          Length = 213

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 3/189 (1%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK- 71
                T  +   + +        RS  +  +  G    C IE+     P +D+ RFG + 
Sbjct: 2   AGSSGTNGQGFFTTRVDTFLNWARSNSLMPMPMG-LACCAIEMMGFAGPKYDSARFGSEA 60

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
           +  SPR AD+++  G  +  M     R W    DPK CI+ GAC ++GG+ H  Y V  G
Sbjct: 61  MRFSPRQADLMIVAGWCSYKMSHAIRRVWDQMGDPKWCIAMGACASTGGM-HRCYGVVQG 119

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPL 191
            D  +PVDVYI GCPP P + L+        +  +       E  +              
Sbjct: 120 VDNFLPVDVYISGCPPRPESVLHALMDIQEKIRNEYSVVQDYEFGKARERAPIMPENTNR 179

Query: 192 RVKVDREAR 200
                 + +
Sbjct: 180 FPGQLEKPK 188


>UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Proteobacteria
           RepID=NUOB_SHEWM
          Length = 213

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 4/204 (1%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
             +   +   V++++   +   L    RS  ++  + G  + C +E+  + +   D  RF
Sbjct: 12  PTSTQTMQEVVEKNLLVTRLEDLVAWGRSNSLWPFNFG-LSCCYVEMATSFTSRHDIARF 70

Query: 69  GIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
           G + +  +PR AD+++ +G V   M       +    +PK  I  G+C NSGG++ D+Y 
Sbjct: 71  GSEVIRATPREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVICMGSCANSGGMY-DVYS 129

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK-IHARGPGELDEQPAEILHGD 186
           V  G D+ +P+D+Y+PGCPP P A +YG  +    ++        P      P EI    
Sbjct: 130 VVQGADRFLPIDLYVPGCPPRPEALMYGLTLLQEAIKDGAPRQARPLNRTITPEEIQAFA 189

Query: 187 MVQPLRVKVDREARRLAGYRYGRQ 210
                  K ++  +          
Sbjct: 190 CRNMRDEKHEQRIKADKLTPPDEV 213


>UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (MbxJ) n=11
           Tax=cellular organisms RepID=C5A4Q2_THEGJ
          Length = 194

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 8/177 (4%)

Query: 33  KIKRSAYVYRVDCGGCNGCE-IEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           +  R   ++ V    C GC  IE+    +  +D ERFGI   P+PR AD+ L TG VT  
Sbjct: 23  RWARKKSLWIVAF--CTGCGGIEMPPLATARYDFERFGIMPNPAPRMADLFLITGYVTPK 80

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
                +  ++   DPK  +++G+C  +GG++ D Y V    DK +P+DV I GC P P A
Sbjct: 81  TLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPRPEA 140

Query: 152 TLYGFAMALGLLEQKIHA--RGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYR 206
            + G    +  +E       +   E  E   +       +  R   +++A+R   + 
Sbjct: 141 VMDGIMEIMRKIENGEADGWKRYRENYEWYRKNQDELFGEGWR---EKDAKRWLAWL 194


>UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cystobacterineae
           RepID=NUOB_MYXXD
          Length = 187

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 6/171 (3%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-V 73
              ++    + +   L    K S + Y         C +E  +  +   D  RFG +   
Sbjct: 14  RDESMGWLQSIVSKGLGWARKYSLFTYPYAT---ACCGMEYMSVAASRHDISRFGAEFPR 70

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR AD+L+  G +         R ++   +PK  +++G C +SGG F+D Y V  G D
Sbjct: 71  FSPRQADLLMVVGTINLKQAPILKRVYEQMAEPKWVVAFGVCASSGG-FYDNYAVLQGID 129

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
           +I+PVDVYIPGCPP P   L G  +    +  ++H R     +  P    H
Sbjct: 130 RIIPVDVYIPGCPPRPEQVLDGLMLLQDKIGNQVH-RIAEREEANPTAARH 179


>UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=Firmicutes
           RepID=NUOB_DESRM
          Length = 196

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 6/155 (3%)

Query: 14  PVPMTVDESIASM---KASLLKKIKRSAYVYRVDCGGCNGCEIE-IFATLSPLFDAERFG 69
             P  + E   ++       L  + R+  ++ +  G    C IE + A     FD  RFG
Sbjct: 31  AEPAVIGEVARTVSVGPLEKLLNLARANSLWPMGFG-LACCAIEGLMAANMARFDLARFG 89

Query: 70  IK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
            + +  SPR AD++L  G VT+      +R ++   +PK  I+ G+C  SGG F D Y V
Sbjct: 90  YEVMRASPRQADVMLVCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPFVDSYSV 149

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
             G DK++PVDVYIPGC P P A ++GF      +
Sbjct: 150 VPGVDKLIPVDVYIPGCAPRPDAVIHGFMKLKEKI 184


>UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=Flavobacteriaceae
           RepID=C6X0Z2_FLAB3
          Length = 185

 Score =  167 bits (422), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 3/159 (1%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-V 72
           P      E   + K S +  + R   ++ +     + C IE  A L+P +DA RFG++  
Sbjct: 14  PPEGFEGEGFFATKLSSVIGMARKYSLWPLPFA-TSCCGIEFMAVLNPTYDASRFGMERN 72

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
             SPR AD+L+  G +++ +     + +    +P+  ++ GAC +SGGIF D Y V  G 
Sbjct: 73  SFSPRQADMLMVCGTISKKLGPVLKQVYTQMAEPRWVVAVGACASSGGIF-DTYSVLQGI 131

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           DKI+PVDVY+PGCPP P   + G      L E +   R 
Sbjct: 132 DKIIPVDVYVPGCPPRPEQIIEGVMQVQALCEGESIRRR 170


>UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=C5CEV5_KOSOT
          Length = 137

 Score =  166 bits (421), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 77/132 (58%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           K +KRS +V+ V    CN C+IEI   L+P +D ERFGIK+V S RHAD+LL TG     
Sbjct: 6   KILKRSLWVFHVSASPCNNCDIEILDMLTPRYDLERFGIKLVGSVRHADVLLVTGMGGCK 65

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           +    +R +  AP P   I+ G C  +G  F + Y   G  D+ VPVD+YIPGCPP P  
Sbjct: 66  VSERVIRIYNQAPKPVFVIAVGTCPVAGATFKESYTRCGPLDRFVPVDLYIPGCPPKPET 125

Query: 152 TLYGFAMALGLL 163
            + G +  LG L
Sbjct: 126 MIAGLSELLGRL 137


>UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_FRAAA
          Length = 281

 Score =  166 bits (420), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 8/170 (4%)

Query: 29  SLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGA 87
             L    R + ++    G    C IE+ +T +  +D  RFG++    SPR AD+++  G 
Sbjct: 17  EKLANWSRRSSLWPATFG-LACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADLMIVAGR 75

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 147
           V++ M     + +   P+PK  +S G C +SGG+F + Y +  G D IVPVD+Y+PGCPP
Sbjct: 76  VSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMF-NNYAIVQGVDHIVPVDMYLPGCPP 134

Query: 148 TPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
            P   +         +       GP        E       +P+ V   R
Sbjct: 135 RPEMLMDAIIKLHEKI-----LAGPVTGRTAHTESGSSPYPKPIDVATAR 179


>UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Thermofilum
           pendens Hrk 5 RepID=A1RWL1_THEPD
          Length = 245

 Score =  166 bits (419), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 85/230 (36%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
           K      +KRS Y+ RVD G CNGC+IE+F  L+P FD ER G+K+V SPR AD++L TG
Sbjct: 6   KQKAYDALKRSVYLLRVDSGSCNGCDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTG 65

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
            VTR         +++AP P + ++ GAC   GGI++D Y   GG DK++PVDVYIPGCP
Sbjct: 66  PVTRQFLPVLKATYEAAPKPCVVVACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCP 125

Query: 147 PTPAATLYGFAMALGLLEQKIHARGPGELDE-QPAEILHGDMVQ---PLRVKVDREARRL 202
           P P A L+G A+AL +LEQK+         E     +   +       L   +  E  + 
Sbjct: 126 PRPHAILHGVAVALDILEQKVKRSETKADAESFKPALPSLEGAINSWELYRALKLELYKH 185

Query: 203 AGYRYGRQIADDYLTQLG--QGEEQVARWLEAENDPRLNEIVSHLNHVVE 250
            GYR G ++  D L      +  +  A   E     + ++  + +   V 
Sbjct: 186 LGYRIGYRVLCDLLRISKGSKDLDDFAAKAEKAVSEKYHD--ARITEAVR 233


>UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfitobacterium
           hafniense RepID=Q24ST9_DESHY
          Length = 155

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 83/141 (58%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH 78
           + E       + L+ +++S ++  +DCG CNGC+ E+ A L+P++D +RFG+  V SPRH
Sbjct: 14  LSEKRLEQGEAHLRSLRQSWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRH 73

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           ADIL+ TG ++  +   AL  ++  P+PK  I+ G C   GG+F + Y    G  + +PV
Sbjct: 74  ADILMCTGPMSTHLIQAALATYEGTPNPKRIIAVGDCALDGGMFKEAYAAHNGVGEALPV 133

Query: 139 DVYIPGCPPTPAATLYGFAMA 159
           D+ IPGCPP+P   L      
Sbjct: 134 DIKIPGCPPSPDELLKVLLQL 154


>UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=1 Tax=uncultured
           methanogenic archaeon RC-I RepID=Q0W6T1_UNCMA
          Length = 135

 Score =  165 bits (417), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/133 (47%), Positives = 83/133 (62%), Gaps = 2/133 (1%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +  IKRS +VY    GGC GC+IE+ A++ P +D ER G+++VPSPR+AD+LL TG V  
Sbjct: 1   MNMIKRSPWVYHAHAGGCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPL 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHD--LYCVWGGTDKIVPVDVYIPGCPPT 148
             +    R +   P+PK  I+ GACG S G+F D   Y + G  DKI+PVDV IPGCPP 
Sbjct: 61  HTKPFLERVYAQTPEPKRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPK 120

Query: 149 PAATLYGFAMALG 161
           P A + G    L 
Sbjct: 121 PEAIMEGIIKVLR 133


>UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Proteobacteria RepID=D0L1N9_HALNC
          Length = 274

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 89/164 (54%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
            D + +  P T D+ +       L    RS ++  VD G CNGCE EI A L+P ++  R
Sbjct: 108 ADLSRLARPATPDKKLEEKWQKSLAGFGRSLHIRHVDAGSCNGCESEISALLNPFYNLHR 167

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
            G+   PSPR AD+LL TG VT  MR P LR +++ P+P+  ++ G C   GG     Y 
Sbjct: 168 LGVFFTPSPRFADLLLVTGPVTEVMREPLLRTFEAMPEPRWVMALGTCATGGGTNGGGYA 227

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
              G D I+PVD+++PGCPP PAA +    + L    Q++H   
Sbjct: 228 CHQGLDGILPVDIWLPGCPPNPAAIIEALLVLLDRRPQQVHGGR 271


>UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Desulfurococcus
           kamchatkensis 1221n RepID=B8D5A0_DESK1
          Length = 337

 Score =  164 bits (415), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 83/204 (40%), Gaps = 8/204 (3%)

Query: 26  MKASLLKKI-KRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           M   + +    RS ++       C+ C  +E    +    D ER+G    PSPR +D+ +
Sbjct: 1   MLERIARWAYARSLWMIHY----CSACGAVEFPPLVMAPLDWERYGYMPTPSPRQSDLYI 56

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
             G +T+      L  ++  P+PK+ ++   C ++GG + D Y  +   D  + V+ ++P
Sbjct: 57  GMGYLTKKTVKLVLNMYRQMPEPKLVLAGCNCTSTGGPYWDSYATYKRLDDFIEVEGWVP 116

Query: 144 GCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI--LHGDMVQPLRVKVDREARR 201
           GC P P   L         L ++       ++     +      ++ +  R + + + + 
Sbjct: 117 GCMPMPDDYLSMIEYVRKDLGKRPLNAYVSKIKPDAFKKISEWEELEKQWRKEYEEKIKE 176

Query: 202 LAGYRYGRQIADDYLTQLGQGEEQ 225
            +      +  + Y +   + E+ 
Sbjct: 177 DSSKPVSYEFKETYPSCYEKDEKS 200


>UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW47_ACICJ
          Length = 264

 Score =  164 bits (414), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 60/144 (41%), Positives = 81/144 (56%), Gaps = 1/144 (0%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           +  +RS +V  VD G CNGCE E+ A  +P ++  R GI   PSPR AD+LL TG VTRA
Sbjct: 122 RGFRRSLHVRHVDAGSCNGCESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRA 181

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M  P  R W++ P P+  ++ G C  SGGI         G ++ +PVD+Y+PGCPP PAA
Sbjct: 182 MLEPLRRTWEAMPAPRWVMASGTCAVSGGIAPGGP-CLSGLEEALPVDLYLPGCPPNPAA 240

Query: 152 TLYGFAMALGLLEQKIHARGPGEL 175
            +    M LG   Q++        
Sbjct: 241 IIEALLMFLGRRAQRVRGGRIDGE 264


>UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Aquificales
           RepID=B2V8R1_SULSY
          Length = 173

 Score =  164 bits (414), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 4/148 (2%)

Query: 19  VDESIASMKASLLKKIKR----SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            DE++  +   L +KI +    S  +  VD G CN CE EI A  +P +D ERFG+K V 
Sbjct: 21  RDENVEILGKQLKEKIDKYFQGSFAIREVDSGSCNACEYEISALSNPYYDIERFGVKFVA 80

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SP+HAD ++ TG +TR M    ++A+++ P+PK  I+ G C   GG F   Y V  G   
Sbjct: 81  SPKHADAIMITGCLTRNMYEAVMKAYENVPNPKFIIAVGDCALDGGTFKGSYAVMDGIKD 140

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGL 162
            +P+D++I GCPP P   + G  + L  
Sbjct: 141 KLPIDIWIKGCPPEPIDIISGLLILLNK 168


>UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Epsilonproteobacteria RepID=B9L626_NAUPA
          Length = 157

 Score =  164 bits (414), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           +  +         +S ++     G    C +E+ A + P +D ER+G  + P+PR ADI+
Sbjct: 1   MLKVLDFFNYARSKSPWIVHFCSG---CCSLEMLAAMGPRYDWERYGYIMTPTPRQADIM 57

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
             TG V++ +    LR ++  P+P+  ++ GAC   GG ++D   V     +I+P DV++
Sbjct: 58  FITGLVSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSVSVIKNMTEILPADVFV 117

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARG 171
            GCPP P A + G       +++   +  
Sbjct: 118 AGCPPRPEAIIAGLEELKEKIKRGEPSAS 146


>UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus
           profundus DSM 5631 RepID=D2RET0_ARCPR
          Length = 709

 Score =  164 bits (414), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 6/228 (2%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           LK+      ++ V       C +E+    +  +DAER G       R  ++++  GA+TR
Sbjct: 2   LKEWGTKWSLWPVHL-VTACCGVELAHAYACGYDAERIGSLNYGICRQTNLIIVEGAITR 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
            M       W+  P+PK  I  GACG  GG+F + Y +    D +        GCPPTP 
Sbjct: 61  KMARVLRITWEQMPNPKFVIVMGACGIKGGLFKNSYHMVRPWDVVPVDVFVP-GCPPTPE 119

Query: 151 ATLYGFAMALGLLEQKIHARGPGE--LDEQPAEILHGDMVQPLRVKVDREARRLAGYRYG 208
           A + G       +E K       E  ++ +  ++     ++  RV+       +   R  
Sbjct: 120 ALIRGIVALQKKIEGKEDFDKFEEVSIEVEKGKVRKLPPLKEFRVENPAVVPNVERGRDD 179

Query: 209 R-QIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHL-NHVVEEARI 254
             +  +D L        +   +   ++  R  EI++HL    V++  +
Sbjct: 180 YAKTLEDVLGVRVYTVGKDHYYAFVDDVKRSAEILAHLGFDNVKDVNV 227


>UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteria
           RepID=Q2T5T7_BURTA
          Length = 174

 Score =  163 bits (413), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 84/162 (51%), Gaps = 1/162 (0%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           P +      P         ++  +L  + R+  +  +D G CNGCE+E+ A  +P ++ E
Sbjct: 14  PDEPAPAGEPA-WQRDAQPIRQEILDILGRALCIRAIDAGSCNGCELELNALGNPYYNIE 72

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
             GIK V SPRHAD+LL TG +T  MR     A+ + P PK+ ++ G C  +GG+F   Y
Sbjct: 73  GLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVVAAGDCACTGGVFAGSY 132

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
            V G  + +VPVDV I GCPP P   L G   AL  +     
Sbjct: 133 AVCGPVETLVPVDVAIAGCPPRPIDLLRGIRGALERVRTGPR 174


>UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q6C2Q1_YARLI
          Length = 216

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 2/147 (1%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           S++           P +  +   +   ++    ++    + V  G    C +E+    +P
Sbjct: 39  SSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQG-SFWPVTFG-LACCAVEMMHVSAP 96

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +D +R GI    SPR +DI++  G +T  M     + +   P+P+  IS G+C N GG 
Sbjct: 97  RYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSCANGGGY 156

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPT 148
           +H  Y V  G D+IVPV        P 
Sbjct: 157 YHFSYSVVRGCDRIVPVRRLRSRMSPH 183


>UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarchaeota
           RepID=Y516_METJA
          Length = 148

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/143 (41%), Positives = 82/143 (57%), Gaps = 1/143 (0%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            KRS +V  V+ GGCNGC+IEI A L+P +D E++GI V  +PR AD+LL TG VT    
Sbjct: 7   RKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 66

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
                 ++  P+PKI ++ GAC  SGGIF + + V GG DK++PVD  IPGCPP P+  +
Sbjct: 67  ERLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEII 125

Query: 154 YGFAMALGLLEQKIHARGPGELD 176
                           R   + +
Sbjct: 126 ETILKVAPKAIAMREKRLKNKDE 148


>UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea RepID=B1L7S0_KORCO
          Length = 174

 Score =  159 bits (402), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 4/150 (2%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADI 81
           +   ++      I  S +           C  E  A+ +P +DAER G       R  ++
Sbjct: 27  NKRPIRDIRDWGIAFSLWPVHFTT---ACCGAEFAASAAPKYDAERLGFLPFIGIRQCNV 83

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           L   G +++ M   A+  ++  P+PK  I  GAC   GGIF + Y +    D I+PV+V+
Sbjct: 84  LFIEGTLSKKMAEAAIWVYEQMPEPKFVIGMGACAIDGGIFWNSYNIVRPMD-ILPVNVF 142

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           IPGCPP P A      M    + +    + 
Sbjct: 143 IPGCPPRPEAVAQAIIMLQRKIRKGELVKY 172


>UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 Tax=Magnetococcus
           sp. MC-1 RepID=A0L9R6_MAGSM
          Length = 213

 Score =  156 bits (395), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIK 71
               +   E +  ++   L    RS  ++ +  G   GC  IE+   ++P FDA R+G++
Sbjct: 30  ATPTVQTGEYLQIVED--LFNWARSNSIWVLGFG--TGCGAIEMRPLMTPRFDAYRYGVQ 85

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
              +PR +++ + +G ++       +RA++    PK  +  G+C  +GG++ D Y     
Sbjct: 86  WRATPRQSNLFIVSGYLSVKTLKRVVRAYEQMQSPKYVMGLGSCTINGGMYWDSYNTIKQ 145

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
            D  +PVD+Y+ GC P P A L G       + ++    G     E+  
Sbjct: 146 LDDYLPVDLYVTGCMPRPEALLSGIEAL-KKIIREGRGEGANIYAERFE 193


>UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Epsilonproteobacteria
           RepID=A6Q6W5_SULNB
          Length = 168

 Score =  156 bits (394), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 11  NGIPVPMTVDESIASMKASLLKKIKR----SAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
             +     +D+ + ++K  + + +K+    S  +  VD G CN CE E  A  +P +D E
Sbjct: 12  GILTEDTALDKELEAIKREIKENVKKKFAGSLAIRMVDSGSCNACEAECNALSNPYYDLE 71

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           R GI  V SPRHAD++L  G +T  M    L A++  P+PK  I+ GAC      F   +
Sbjct: 72  RLGIYFVASPRHADVMLLNGLMTFNMTPHVLDAYKQIPEPKWVITLGACPVMEAPFEKTF 131

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            V       +PV  +IPGCPP P   + G    L  +
Sbjct: 132 AVKAPAADHLPVAHHIPGCPPEPLEIIRGLLEFLKKI 168


>UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit n=4 Tax=Archaea
           RepID=B6YWP9_THEON
          Length = 191

 Score =  156 bits (394), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 90/154 (58%), Gaps = 11/154 (7%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           K S +V+ ++ G CNGC+IEI    +P  D ER GIK+V SPRHAD + FTG +TR    
Sbjct: 3   KNSLWVFHLNSGSCNGCDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLP 62

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI-----------VPVDVYIP 143
             + A ++ P+PK+ ++ GAC   GGI++D Y V GG  ++            P  V+IP
Sbjct: 63  KVIDALKAVPEPKVVLAIGACACGGGIWYDTYSVIGGVKELYRILKEEYNMEPPATVFIP 122

Query: 144 GCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
           GCPP P A +YG A+A G+LE K       E +E
Sbjct: 123 GCPPKPEAIIYGVAVASGMLESKQKKTVYVEPEE 156


>UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2
           Tax=Proteobacteria RepID=Q21TB3_RHOFD
          Length = 254

 Score =  156 bits (394), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 74/138 (53%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +  +L K+  RS  +  V  GGC+GCE+EI A  +  FD  R+GI +V SPRHAD L+
Sbjct: 114 IKVSKALHKRFGRSLKLRSVSAGGCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALV 173

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            +G +TR M       W + P+PK+ I+ GAC  SGG+F D   +           +Y+P
Sbjct: 174 LSGPITRNMAQALQICWDAIPEPKLVIAVGACAISGGVFADSDALDRQFLDNFKPALYVP 233

Query: 144 GCPPTPAATLYGFAMALG 161
           GCP  P   + G    LG
Sbjct: 234 GCPAHPLTFISGIMDLLG 251


>UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=1 Tax=Conexibacter woesei
           DSM 14684 RepID=UPI0001C31273
          Length = 229

 Score =  153 bits (386), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 4/173 (2%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPR 77
           V+E + +     +    R   ++    G    C IE+ +      D  RFG +    SPR
Sbjct: 44  VEERVLTTTLDKVTAWARGNSMFPATFG-LACCAIEMMSLPGARLDIGRFGFEAFRASPR 102

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+L+ +G V+  M     R +    +P+  IS GAC +S G+F + Y +    DK +P
Sbjct: 103 QADMLILSGRVSIKMAPIVRRIYDQMLEPRWAISMGACCSSMGVF-NNYALV-PADKFMP 160

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQP 190
           +DV++PGCPP P A  +        +     A      +    E + G   +P
Sbjct: 161 IDVHVPGCPPRPEALAHAILKLRSKVHGNPPAGWRERYEAVGTEEVVGAADRP 213


>UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea
           RepID=Q64DY8_9ARCH
          Length = 788

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 6/161 (3%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           L++      ++       + C +E+  T +  +D ER G   +   R A+ ++  G +TR
Sbjct: 21  LRRWATKWSLWPCHFL-TSCCGVELAHTGACGYDMERLGTLNMGISRQANFIMVEGTITR 79

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
            M       W+  PDPK     G CG  GGIF + Y +      IVPVD +IPGCP TP 
Sbjct: 80  KMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRP-SDIVPVDFFIPGCPITPE 138

Query: 151 ATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPL 191
           + L G       +E     R    +  +  E+  GD  +  
Sbjct: 139 SLLRGVRAVQEKIE----GRDNTTIRFKHVELPSGDGEENR 175


>UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Desulfovibrio
           RepID=B8IYV4_DESDA
          Length = 254

 Score =  151 bits (381), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 78/154 (50%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
           R+   I     V +             +RS  + +V   GCN CE +     + +FD  R
Sbjct: 101 REDLLIVPGKPVTQPATPPVPGKFAIFRRSLKLRQVSAAGCNACEADCNVLGTLVFDLPR 160

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
           FGI  V SPRHAD ++ TG V+  MR  A+  + + P+P++ ++ GAC  SGG+F D   
Sbjct: 161 FGIDFVASPRHADGIVLTGPVSENMRLAAIDTYNATPEPRLVVAVGACAISGGLFRDAPQ 220

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
              G   I+PVD+++PGCPP P   L G  M   
Sbjct: 221 CNNGIADILPVDLFVPGCPPNPWTILDGLLMLRE 254


>UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=cellular
           organisms RepID=A9BJL8_PETMO
          Length = 195

 Score =  151 bits (381), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 5/154 (3%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPR 77
           ++++I   +        +S ++       C GC  +E+  T++  FD ER G+  + +PR
Sbjct: 17  LNDTITFWEKIKNIFRGKSLWMLHY----CTGCGAVELPPTMTARFDMERLGMGPMATPR 72

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+LL TG ++       +  ++    PK  + +G+C  +GGI++D Y V    D  +P
Sbjct: 73  QADVLLITGYLSVKTLRRVIYTYEQMMTPKYLVGFGSCTINGGIYYDSYAVINRLDYYLP 132

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           VD+Y+ GC P P A +  F     ++ +      
Sbjct: 133 VDLYVAGCMPRPEAIMNTFKTLENMITKGEANGW 166


>UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meiothermus silvanus
           DSM 9946 RepID=C1XWY8_9DEIN
          Length = 290

 Score =  150 bits (378), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 80/189 (42%), Gaps = 11/189 (5%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG 69
               P P T  E                     V  G     + E+    +P  D  RFG
Sbjct: 111 VEPTPPPPTRAELHLPT-----------LAFREVSAGNTGLDDTEVALAGNPFHDMSRFG 159

Query: 70  IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
             VV SPRHAD LL TG V++ MR    R +Q+ P+PK  ++ G     G IF +   V 
Sbjct: 160 FSVVASPRHADALLVTGPVSQNMREALWRTYQATPEPKGVVAVGNEAIGGEIFAESAAVV 219

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
           GG D++VPVDVY+PG P  PA+ L+G  +  G  +Q +      E   Q      G    
Sbjct: 220 GGVDQVVPVDVYVPGSPARPASILHGLLLLSGQTQQVLVGGRLHEERTQVVSSEAGVEAS 279

Query: 190 PLRVKVDRE 198
             R +   E
Sbjct: 280 SRRAERGEE 288


>UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=Acetobacter
           pasteurianus RepID=C7JEU9_ACEP3
          Length = 165

 Score =  149 bits (376), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 55/128 (42%), Positives = 73/128 (57%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           +    ++ VD GGC GC +E+ A     +D E  G   V SPR+AD+LL TGA+TRAM  
Sbjct: 25  RWPLLLFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAP 84

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
               AWQ+ P PK  I+ G+C   GG+F + Y V GG ++ V +D+ IPGCPP P   L 
Sbjct: 85  VLEAAWQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLN 144

Query: 155 GFAMALGL 162
           G     G 
Sbjct: 145 GLCSLFGK 152


>UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=Staphylothermus
           marinus F1 RepID=A3DM92_STAMF
          Length = 179

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 27  KASLLKKIK-RSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
           K    + ++ RS ++       C+ C  IE+   +    DAER+GI   PSPR AD+L+ 
Sbjct: 8   KLGFAEWVRSRSIWMIHY----CSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVI 63

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            G VT+      +R +   P+P+  +    C  +GG++ D Y      D+ +PVDV++PG
Sbjct: 64  MGYVTKKTLKVLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPG 123

Query: 145 CPPTPAATLYGFAMALGLL-EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
           C P     L GF      + E +I    P E   +  E+++ ++   +R K+  + R
Sbjct: 124 CMPRAEDWLQGFLKLRKKISEGRIVNPRPVEEPGELEELIYREIE--MREKMMAKVR 178


>UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=Thermoproteaceae
           RepID=A4WJL4_PYRAR
          Length = 196

 Score =  147 bits (370), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A ++      ++ S +   +     + C +E+  T  P FDAER+G+    + R ++++L
Sbjct: 20  AKLEKIFNWGVRWSLWPVHLVT---SCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVIL 76

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
             G +TR M       ++  P+PK  ++ GAC   GG+F + Y V      +  VDVYI 
Sbjct: 77  VEGTITRKMAKVLKMVYEQMPEPKFVLAMGACAVRGGLFWNSYHVVQVDTVVP-VDVYIA 135

Query: 144 GCPPTPAATLYGFAMALGLLEQKI 167
           GCPPTP A +  F M    ++ K 
Sbjct: 136 GCPPTPEAVVRAFIMLHNKIKGKP 159


>UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Actinomycetales RepID=A1SQ82_NOCSJ
          Length = 162

 Score =  147 bits (370), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 73/129 (56%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           +  S  +  VD G CNGCEIE+     P++DAER+G ++V SPRHAD++L TG VT  M 
Sbjct: 34  LAGSVQIRHVDAGSCNGCEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNML 93

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
            P  R  ++ P P++ ++ G C  + G F   Y V G     V VD+ +PGCPP PAA +
Sbjct: 94  EPLRRTVEATPRPRLVLAVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIV 153

Query: 154 YGFAMALGL 162
                  G 
Sbjct: 154 DALRRVTGR 162


>UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=13 Tax=Bacteria
           RepID=B5E8B5_GEOBB
          Length = 332

 Score =  145 bits (366), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 4/185 (2%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-LFDAERFGIKVVPSPRHADILLF 84
           M+  + +       ++R++ G CNGC++E+  T +   FD E+ G +    P  ADILL 
Sbjct: 1   MQDQVKETPAEPVRLFRINTGSCNGCDVELAVTAAVDEFDVEQLGCRYTEEPHEADILLI 60

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
           TG +T   R+ ALR +  AP+ K+ ++ G C  SGG+F D Y V G   + +PVD+ +PG
Sbjct: 61  TGPLTVRARNEALRLYAEAPETKVTVAVGVCPVSGGVFRDSYAVDGPVQRYLPVDLNVPG 120

Query: 145 CPPTPAATLYGFAMALGLLEQKIHARG---PGELDEQPAEILHGDMVQPLRVKVDREARR 201
           CPP P A L G A A  L   +              +PA+          R+  D +A  
Sbjct: 121 CPPRPQALLAGIAQARDLWRARSKGVDAVFAAPPLAKPADEPAQQFPIRGRMSFDPKACV 180

Query: 202 LAGYR 206
                
Sbjct: 181 DCRMC 185


>UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Metallosphaera sedula DSM 5348 RepID=A4YGN5_METS5
          Length = 203

 Score =  144 bits (364), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 71/152 (46%), Gaps = 8/152 (5%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
           PV     E++           KRS Y+Y +D G C GC +E+    SP +D  RFGI   
Sbjct: 60  PVFSPTGETLTPRVERSDVTFKRSFYLYPLDAGSCGGCNLELRLISSPQYDMTRFGIFFT 119

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            +P+HAD LL  G + + M     RA+   P PK+ I  G C  SGG          G  
Sbjct: 120 NTPKHADALLIMGNLGKRMEEVIRRAYDVIPSPKLVILLGTCAISGG--------VTGIP 171

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
             +  DV +PGCPPTPA+ L     A G   +
Sbjct: 172 PDIRGDVIVPGCPPTPASILDALIKAKGGDRK 203


>UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospirillum
           RepID=A3ETD3_9BACT
          Length = 169

 Score =  144 bits (362), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 66/136 (48%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
             S  +  VD G CN CE+E+ A     +  ER GI+ V SPRHAD+LL TG V+  M  
Sbjct: 33  GGSLSIRHVDAGSCNACELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQMEQ 92

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
           P L   ++   PK  ++ G C   GG+F     V  G D + P    +PGCPP+P+  L 
Sbjct: 93  PLLDTHEAMASPKTVLAVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDILR 152

Query: 155 GFAMALGLLEQKIHAR 170
                      K  +R
Sbjct: 153 ALRGLSRPGPGKPPSR 168


>UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermoplasmatales
           RepID=Q978D5_THEVO
          Length = 222

 Score =  143 bits (361), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 6/153 (3%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
           +P      +             +RS +V+ +D G C  C +E  +  SP +DA R GI +
Sbjct: 64  LPDYKPTGDQRIFTIKKTEDTFRRSFHVFPIDSGACGACNMEFLSIFSPQYDANRLGIFM 123

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
           V +PR+AD L+  G +T  M+    RA+++ P+PK+ I+ GAC  +GGI  +        
Sbjct: 124 VNTPRYADALIVMGVMTPGMKEALDRAYEAMPEPKLVIAMGACAVTGGIMGEN-----PL 178

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           D+    +V I GCPP+P   +     A+    +
Sbjct: 179 DRE-KYNVEIAGCPPSPYTLIAALNAAMKDKRK 210


>UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=Selaginella
           uncinata RepID=Q2WGH7_SELUN
          Length = 215

 Score =  143 bits (361), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 5/172 (2%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIK-RSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           R   G+    T D  I +       + +  S+        G + C  E    +    D++
Sbjct: 28  RPTPGVDRAATPDSIIPTTPNDFTNRARLPSSRPPPY---GTSCCFTEFAPLIGSRSDSD 84

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH-DL 125
           R G     SPR AD+++  G  T  M    +R+++  P+PK  I+ GAC  +GG+   D 
Sbjct: 85  RHGSVPRSSPRQADLIITAGTATTKMAPSLVRSYEQTPEPKHAIAMGACTVTGGMLSTDP 144

Query: 126 YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
           +    G DK +P D Y PG PP P A +         + ++ +     +L E
Sbjct: 145 HSTVRGVDKSIPADTYPPGRPPKPEAIVDATIKPREKVSRETYDNYRDKLRE 196


>UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Sulfurospirillum deleyianum DSM 6946
           RepID=D1B297_SULD5
          Length = 138

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 1/130 (0%)

Query: 38  AYVYRVDCGGCNGCEIEIFA-TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
            YVYR++ G CNGC++EI A  L P F  +  G      P  A+ILL TGA+T       
Sbjct: 5   LYVYRINTGSCNGCDVEILASVLLPKFGFDALGCVYTNDPTLANILLVTGAITARSTPYL 64

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
             A +  P  KI ++ G C  SGG+F D Y + G  D  V VDV I GCPP+P     G 
Sbjct: 65  QAALKQLPSKKIVVALGICPISGGVFRDSYAITGPLDTFVDVDVNISGCPPSPKEIAQGL 124

Query: 157 AMALGLLEQK 166
           A A  L  ++
Sbjct: 125 AQACELWRER 134


>UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=2
           Tax=Gluconacetobacter diazotrophicus PAl 5
           RepID=B5ZJ00_GLUDA
          Length = 166

 Score =  141 bits (355), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 71/128 (55%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            R   V+ V+ GGC GC +E+ A     +     GI  V +PR A++LL TG +TRAM  
Sbjct: 22  ARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAP 81

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
               AW + P+P+  ++ GAC   GG F + Y V GG +    +D+ +PGCPP+PAA L 
Sbjct: 82  VLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDMTVPGCPPSPAAILA 141

Query: 155 GFAMALGL 162
           G A  L  
Sbjct: 142 GLARVLER 149


>UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (NADH-ubiquinone oxidoreductase 20 kDa subunit) (Complex
           I-20kD) (CI-20kD) (PSST subunit). n=1 Tax=Gallus gallus
           RepID=UPI0000EC9F96
          Length = 176

 Score =  140 bits (354), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 8/173 (4%)

Query: 7   PRDANGIP----VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           P+ +  +P    VP +  E I +    L+   +R A          +     +   L   
Sbjct: 6   PKSSAVVPKKSYVPTSRGEYIVTKLDDLINWARRRAC---FWTECFHCVASNMGYLLWKS 62

Query: 63  FDAERFG-IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +   FG I++      +   L        +      A    P+      + +C N GG 
Sbjct: 63  HERSSFGLIQLTAHMPMSTACLPARPHENHLSPHLTSAAGLGPELCFTNIFCSCANGGGY 122

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       ++++   +    
Sbjct: 123 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRERKLQIWYR 175


>UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Euryarchaeota
           RepID=C5U7Y6_9EURY
          Length = 154

 Score =  140 bits (353), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/147 (34%), Positives = 85/147 (57%), Gaps = 10/147 (6%)

Query: 30  LLKKIKRS--AYVYRVDCGGCNGCEIE-IFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
           L+KKI R    +V  V  GGCNGC+IE + A  SP +DAE++ + +  +PR  DIL+ +G
Sbjct: 8   LMKKISRKKCIHVMLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTFNPRETDILIVSG 67

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD-------LYCVWGGTDKIVPVD 139
            VT+ ++    + ++  P+PK  ++ G+C  +GG++ +          V G  + I+PVD
Sbjct: 68  CVTKFVKESLRKIYEKIPEPKAVVAIGSCALTGGVYKNIGGDLGTSDFVAGPVENIIPVD 127

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQK 166
           V +PGC P P   + G   A+ L+ ++
Sbjct: 128 VKVPGCAPRPEDIISGIVKAIPLVVER 154


>UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=19 Tax=Bacteria
           RepID=B1ZSE7_OPITP
          Length = 285

 Score =  140 bits (352), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/146 (37%), Positives = 76/146 (52%), Gaps = 1/146 (0%)

Query: 8   RDANGIPVPMTVDESIASMKAS-LLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           R+   +  P   +  +A+     L K   RS  + +V  GG    E ++    +  +D  
Sbjct: 123 REDLVLGAPGQEEVRLAAALDEKLRKMFGRSLRLRQVSAGGSGAEEADLNVLGTIGWDLG 182

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           RFGI+ V SPRHAD L+ TG V++ M     + W++ P PKI I+ GA   SGG+F    
Sbjct: 183 RFGIQFVASPRHADGLVVTGPVSKGMELALRKTWEAMPAPKIVIAVGAEAISGGVFAGHP 242

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAAT 152
            V  G D IVPVD+YIPG PP P   
Sbjct: 243 QVRNGVDAIVPVDLYIPGWPPHPLTI 268


>UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=Sulfolobus
           RepID=D2PJN5_SULIS
          Length = 201

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 8/129 (6%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            KRS Y+Y +D G C GC +E+    SP +D  RF I    +PRHAD L+  G +T  M+
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               +A+++ P+PK+ I  GAC  SGGI  +           +   V I GCPP P   L
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEGVP--------LEAVVEISGCPPNPFTIL 192

Query: 154 YGFAMALGL 162
                  G 
Sbjct: 193 EALMKVKGK 201


>UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarchaeota
           RepID=Y1363_METJA
          Length = 151

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFAT-LSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
             K+  +V  V  GGCN C+IE+     SP +DAE++ + +  +PR ADIL+ TG VT+ 
Sbjct: 9   ARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKV 68

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHD-------LYCVWGGTDKIVPVDVYIPG 144
           +     + ++  P+PK  ++ GAC   GG++ +          V G  + I+PVDV +PG
Sbjct: 69  VAESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPG 128

Query: 145 CPPTPAATLYGFAMALGLLEQ 165
           C P P   + G   AL  + +
Sbjct: 129 CAPRPEDIIAGIVKALPKVIE 149


>UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN
          Length = 214

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 7/176 (3%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           +    P+     P P +  E + +    L+   +RS  ++ +  G    C +E+    +P
Sbjct: 42  TQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMHMAAP 99

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICIS--YGACGNSG 119
            +D +RFG+    SPR +D+++  G +T  M     ++    PD    +   +G     G
Sbjct: 100 RYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKS-PPRPDAGAALRGLHGELRQRG 158

Query: 120 GIFHDLYCVWGGTDKIVPVDVYI-PGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
            +         G  +      ++ P  P T  A LYG       ++++   +    
Sbjct: 159 RLLPLFLLGGEGL-RPHRARGHLHPRLPTTAEALLYGILQLQRKIKRERRLQIWYR 213


>UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=Ignicoccus
           hospitalis KIN4/I RepID=A8A9X3_IGNH4
          Length = 207

 Score =  137 bits (344), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 67/189 (35%), Gaps = 16/189 (8%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A +K +L    + S ++  +   G   C IE+        D ER G+    +PR  D++L
Sbjct: 18  APVKEALKWSRRNSLWLLHL---GIMCCAIEMMQAAFAFHDFERLGVLARATPRQVDVIL 74

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP------ 137
             G V R +     R +   P P+  I  G C  +GG +     V  G  +++       
Sbjct: 75  INGPVNRKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDGIHEVIESLPEEY 134

Query: 138 ----VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM---VQP 190
                 V + GCPP P   L        L+ +   AR P        E            
Sbjct: 135 RKDVHVVNLAGCPPRPEGLLRAILKMEELINEGDLARAPLTRYRLHDEEGSDKKVVDPML 194

Query: 191 LRVKVDREA 199
                +R+A
Sbjct: 195 RYAYNNRKA 203


>UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Caminibacter
           mediatlanticus TB-2 RepID=A6DAC3_9PROT
          Length = 140

 Score =  137 bits (344), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 1/130 (0%)

Query: 38  AYVYRVDCGGCNGCEIEIFA-TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
             ++R++ G CNGC++EI A  +S  FD ++ G + + +   ADI + TG VT       
Sbjct: 7   PKIFRINTGSCNGCDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFL 66

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
               ++   P + IS G C  + GIF D Y + G  D  V VDV + GCPP P A L G 
Sbjct: 67  KEVIKNHKKPYVVISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGV 126

Query: 157 AMALGLLEQK 166
             A+ +L++K
Sbjct: 127 KTAIDILKRK 136


>UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW77_ACICJ
          Length = 164

 Score =  136 bits (342), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 63/140 (45%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           + RS  V  VD G C GCEIEI A           GI +V   R ADILL TG  TR + 
Sbjct: 22  LGRSLAVRHVDAGSCGGCEIEIAACRRLRGGMAAHGIAMVEDLRAADILLVTGVATRNLA 81

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               ++      P+  ++ G C   GG+F  +  V GG   ++PVD+ I GCPP P   L
Sbjct: 82  EAVRKSLAGMAPPRFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQIL 141

Query: 154 YGFAMALGLLEQKIHARGPG 173
            G    +    ++       
Sbjct: 142 AGLVALVEANAREPRRARVE 161


>UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13
           Tax=Methanococcales RepID=VHUG_METJA
          Length = 288

 Score =  136 bits (342), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 63/234 (26%), Gaps = 45/234 (19%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVPS-------PRHADILLFTGAVT 89
             V  +   GC+GC I +      L +      I   P        P   D+ L  G + 
Sbjct: 6   VKVGMIQLCGCSGCHISLLDLHDKLLEVLPNLEIVYAPIIADPKEIPEGIDVFLVEGGIR 65

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFH------------DLYCV--------- 128
                      +     KI I++G C   GGI               +Y           
Sbjct: 66  NEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKEELLNYVYSTDSTENKGEI 123

Query: 129 -----------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
                             + VD  IPGCPPTP          L   E K+  +   +   
Sbjct: 124 PSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIALLNGEEPKLPTKIVCDECP 183

Query: 178 QPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLE 231
           +  E +     +  +   +                  + T+ G G +  +  + 
Sbjct: 184 RKKENV---FPETFKRTHEGRPDPERCLFEQGYTCLGFATRAGCGAKCPSAGVP 234


>UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophilus torridus
           RepID=Q6L0U2_PICTO
          Length = 202

 Score =  130 bits (327), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA 79
           ++ I+ +  S+ KK ++S  +Y +D G C  C  E+F+   P +D  R+ I    +PRHA
Sbjct: 69  NDDISIISGSIDKKFRKSLNIYSIDSGTCGACNSELFSISIPEYDLTRYHIFFTNTPRHA 128

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D ++ +G    +M+     A  + P P   I  GAC  SGGI    +         +   
Sbjct: 129 DAIILSGIYNESMKDVIDNALGAMPKPGYLILLGACALSGGIIGSGHE--------IKAV 180

Query: 140 VYIPGCPPTPAATLYGFAMAL 160
           + IPGCPP P   L G    +
Sbjct: 181 LEIPGCPPNPYTILKGLRRLM 201


>UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=63
           Tax=Proteobacteria RepID=PHNS_DESDA
          Length = 315

 Score =  127 bits (319), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 66/271 (24%), Gaps = 52/271 (19%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK- 71
             V + +    A           R   V  +    C GC   +  T  P  D        
Sbjct: 31  TAVAVAMGMGPAFATDVAAALTGRRPSVVYLHAAECTGCSEALLRTYQPFIDTLILDTIS 90

Query: 72  ---------------------VVPSPRHADILLFTGAVTRAM---------RSPALRAWQ 101
                                 V  P    I L  GA+   M          +       
Sbjct: 91  LDYHETIMAAAGEAAEEALQAAVNGPDGF-ICLVEGAIPTGMDNKYGYIAGHTMYDICKN 149

Query: 102 SAPDPKICISYGACGNSGGIF--HDLYCVWGGTDKI-----VPVDVYIPGCPPTPAATLY 154
             P  K  +S G C   GGI           G +       V   + +PGCPP P   + 
Sbjct: 150 ILPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKA-INVPGCPPNPLNMVG 208

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK--------VDREARR-LAGY 205
                L    QKI     G       + +H    +                EAR+    Y
Sbjct: 209 TLVAFLKG--QKIELDEVGRPVMFFGQSVHDLCERRKHFDAGEFAPSFNSEEARKGWCLY 266

Query: 206 RYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
             G +  + Y     +       W  A   P
Sbjct: 267 DVGCKGPETY-NNCPKVLFNETNWPVAAGHP 296


>UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           n=1 Tax=Taeniopygia guttata RepID=UPI000194DF39
          Length = 183

 Score =  127 bits (318), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 45/171 (26%)

Query: 2   SNLLGPRDANGIP----VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFA 57
           S++   + +  +P    VP +  E + +    L+   +RS  ++ +  G    C +E+  
Sbjct: 47  SSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMH 104

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
             +P +D +RFG+    SPR AD+++  G +T  M             P           
Sbjct: 105 MAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPAL------RKKP---------PC 149

Query: 118 SGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
            G                         CPPT  A LYG       ++++  
Sbjct: 150 RG------------------------RCPPTAEALLYGILQLQRKIKREKR 176


>UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2
           Tax=Aciduliprofundum boonei T469 RepID=B5ICA0_9EURY
          Length = 179

 Score =  126 bits (316), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 12/132 (9%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             +S +++ +D G C+ C  EI    SP +D  R G    P PRHADILL  G  T  M 
Sbjct: 60  FNKSVHIFVLDVGSCSSCNREISLLNSPQYDLHRLGFFFTPVPRHADILLVIGEPTEKMI 119

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
                A++  P+PKI ++ GAC N               +KI+ VD  + GCPP P A L
Sbjct: 120 PVLKEAYEQMPEPKIVMTAGACAN------------EKIEKIIKVDARVSGCPPQPIAIL 167

Query: 154 YGFAMALGLLEQ 165
               M  G    
Sbjct: 168 KALLMLTGRWNP 179


>UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans
           RepID=Q5FU78_GLUOX
          Length = 161

 Score =  125 bits (314), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/127 (36%), Positives = 61/127 (48%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
           + +R   +Y ++ GGC GC +EI +     F  E+ G   V  P  AD LL TGAVTR  
Sbjct: 32  RRERPIGLYVLEAGGCEGCFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVC 91

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAAT 152
                R W++ P  +  I+ GAC   GG F   Y   GG + + PV   I GCPP+P   
Sbjct: 92  AEMVDRVWRAMPPGRSLIAVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSPDDI 151

Query: 153 LYGFAMA 159
           L      
Sbjct: 152 LRALQEL 158


>UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shigella sp. D9
           RepID=UPI0001B52F0A
          Length = 173

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 81/116 (69%), Positives = 94/116 (81%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           + P     +  P+T+DE    MK  LL+ I+RSAYVYRVDCGGCN CEIEIFA ++P+FD
Sbjct: 1   MSPVLTQHVSQPITLDEQTQKMKQHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFD 60

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           AERFGIKV+ SPRHADILLFTGAVTRAMR PALRA++SAPD KIC+SYGACG  GG
Sbjct: 61  AERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGAGGG 116


>UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small subunit n=5
           Tax=Dehalococcoides RepID=D2BHA4_DEHSV
          Length = 312

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 73/259 (28%), Gaps = 57/259 (22%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP-------------------RH 78
             V       C GCE+ I     PL D     +K+V  P                     
Sbjct: 2   VRVAEEWFAVCGGCELSILDIGEPLLDVLP-NLKIVHMPVLMDHKLLGQKGDGIKYEIPE 60

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------- 121
           AD+ + TG +          A +     K+ ++ G C   GGI                 
Sbjct: 61  ADLGIITGGIRNEENREL--ALEMRKKCKLIVALGTCACFGGIPALANLSTTEDMLKQVF 118

Query: 122 ----------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
                              +       D+I+ VD+++PGCPPTPA  +      L     
Sbjct: 119 SKEKGTDPASPPGDKSLPKMLDRVYAVDEIITVDIHLPGCPPTPAHIVELLTAVLAGKTF 178

Query: 166 KIHARGPGELDEQPAEILH--GDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGE 223
            +  R   +      E     G + +PL+       R         Q           G 
Sbjct: 179 ALPERSVCDTCPTIREKQSTGGSIKRPLQNAQFTPGRYDNMRCLNEQGLFCLGPVTKAGC 238

Query: 224 EQVARWLEAENDPRLNEIV 242
            ++     +E  PR  +  
Sbjct: 239 NRILGADPSEEIPRCIKAY 257


>UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulibacter bethesdensis
           CGDNIH1 RepID=Q0BPG7_GRABC
          Length = 174

 Score =  124 bits (311), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 1/159 (0%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           S+     D   +P   TV   IA  ++S   K+ ++  +  V+ GG + C +E+ A  + 
Sbjct: 10  SHPGLWDDTASLPHAETVAALIARRRSSARPKLGQALSILHVESGGGSACLLELEALRAA 69

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
                R G++ V SP HADILL TG     + S   +AW++ P P+  I+ G      G+
Sbjct: 70  PGLLARHGLRFVTSPLHADILLITGDGCHNLTSAIHQAWEAMPGPRWAIAVGDGAAGDGL 129

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
               Y   G  ++ +P D+ IPG PP     L G    +
Sbjct: 130 LRGSYASTGNMEE-IPFDLVIPGSPPAADTILSGLRALV 167


>UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clostridia
           RepID=Q3ABV6_CARHZ
          Length = 354

 Score =  123 bits (309), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 72/271 (26%), Gaps = 51/271 (18%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-----LFDAER 67
               + + +S+  +  +L    K    V  +    C GC + +  ++ P     L +   
Sbjct: 16  TAATLGLSQSVPEVAYALENAAKGQPPVIWIQGASCTGCSVSLLNSVHPDIKEILLEIIN 75

Query: 68  FGIKVVPSPRHADI-----------------LLFTGAVTRAMR--------------SPA 96
                  S     +                 L+  GAV                     +
Sbjct: 76  LKFHPNISAATGHVAVEAFLGEAEKNKGKFFLVVEGAVPTKDNGVYCSIGEKDGRELYFS 135

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPV--DVYIPGCPPTPAAT 152
               +     K  I+ G C   GGI        G     +++     + IPGCPP P   
Sbjct: 136 EVVKELGEKAKAVIAIGTCAAFGGIPAADPNPTGCVPVTEVIDPKKVLNIPGCPPHPDWF 195

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARR-------LAGY 205
           +   A  L L  +       G        I+H +  +         A+        L   
Sbjct: 196 VGSLAHVL-LYNELPKTDKFGRPKMFYEGIIHDNCPRRQYFDNSIFAKDFSEPGCLLLLG 254

Query: 206 RYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
             G     D  T+L  G      W      P
Sbjct: 255 CKGPVTHSDCPTRLWNGG---VNWCIKAGHP 282


>UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LSU0_ACIC1
          Length = 269

 Score =  123 bits (308), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKR---SAYVYRVDCGGCNGCEIEIFA 57
           +      RD   +P     D+++A+++A L ++ +    S +V  VD G     E E+ A
Sbjct: 85  IPAPAAHRDLLVVPALPETDDALAAVRAELARRTRLLRRSIHVRHVDAGSDGADEWEVLA 144

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            L+P++D  R GI    SPRHAD+LL TG  +R M +P  R  Q+AP P + I+ G    
Sbjct: 145 LLNPVYDIHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIAAGTDAI 204

Query: 118 SGGIFHDLYCVWGGTDKIV------------------PVDVYIPGCPPTP 149
           SGG+ H  Y   GG   ++                   VD+++PG PPTP
Sbjct: 205 SGGLVHPTYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPTP 254


>UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanocaldococcus
           RepID=Y726_METJA
          Length = 216

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 18/203 (8%)

Query: 45  CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAP 104
             GC  C   I       ++            +  DI+L  GAV         +  +   
Sbjct: 1   MTGCGSCGKIIKNIEKKYYNQL----------KEKDIVLVGGAVNLDDEEEVKKIMEIRK 50

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGG-------TDKIVPVDVYIPGCPPTPAATLYGFA 157
           + K+ I+ G+C  SGG    L  +  G          +V VD  I GCPP          
Sbjct: 51  NSKVLIAVGSCAVSGGFQRMLIGLENGFPQRFVRIGDVVKVDYAIIGCPPDEEEVERIVK 110

Query: 158 MALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLT 217
             +   ++ + +    +  E  A     D    +   +    + L      + I D++ T
Sbjct: 111 AVIEKDKEIVDSYLILKPYEVIAGKPIIDAYMKVNDVLLTSNKELCLGCDDKPINDEFCT 170

Query: 218 QLG-QGEEQVARWLEAENDPRLN 239
             G    +  A  L  +  P++N
Sbjct: 171 GCGTCVAKCPANALTIDEKPKVN 193


>UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteobacteria
           RepID=C3XGH6_9HELI
          Length = 425

 Score =  120 bits (300), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 64/270 (23%), Gaps = 47/270 (17%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD----- 64
           A  +   + +  + A + A   +   R   +  +    C GC   +  +  P  D     
Sbjct: 93  AAVVTASIGLPATFAPLTARAAELADRVP-IIWLHMAECTGCSESLLRSEDPCIDSIIFD 151

Query: 65  ---AERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSPA----------L 97
               E     +  S   A+              +++  G + +                 
Sbjct: 152 YVSMEYHETIMAASGYQAEKSLEDAVKKYDGRYVMMVEGGIPKDTEYFLTIGASGRTGAE 211

Query: 98  RAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV-PVDVYIPGCPPTPAATLY 154
                A       + G C + GG+               I+    + +PGCPP     + 
Sbjct: 212 ECRHVAKHAAAIFAIGTCSSFGGVQAAAPNPTNAHPLSDIIDKKVINVPGCPPNEKNIVG 271

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV--------DREARR-LAGY 205
                +  L   +               +H    +  R           D  A+     Y
Sbjct: 272 TLMQHI--LFGDMALDAFHRPKWAYGHRIHDLCERRGRFDAGEFVQHFGDENAKNGYCLY 329

Query: 206 RYGRQIADDYLTQLGQGEEQVARWLEAEND 235
           + G +    +             W      
Sbjct: 330 KVGCKGPYTFNNCSKLRFNSHTNWPIGAGH 359


>UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n=17 Tax=Bacteria
           RepID=PHNS1_DESVH
          Length = 317

 Score =  119 bits (299), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 68/270 (25%), Gaps = 50/270 (18%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD-------- 64
           I V M +  + A   A  L    R   V  +    C GC   +     P  D        
Sbjct: 33  IAVTMGMGPAFAPEVARALTG-SRRPSVVYLHNAECTGCSESVLRAFQPYLDELILDTIS 91

Query: 65  AERFGIKV--------------VPSPRHADILLFTGAVTRAM---------RSPALRAWQ 101
            +     +              V +P    I +  GA+  A           +       
Sbjct: 92  LDYHETIMAAAGDAAEAALHQAVANPDGF-ICIVEGAIPTADNGIYGKVANHTMLSICSD 150

Query: 102 SAPDPKICISYGACGNSGGIF--HDLYCVWGGTDKIVPV----DVYIPGCPPTPAATLYG 155
             P  K  I+YG C   GG+           G +  +       + + GCPP P   +  
Sbjct: 151 IVPKAKAVIAYGTCATFGGVQAAKPNPTGAKGLNDALKHLGVNAINLAGCPPNPYNLVGT 210

Query: 156 FAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV--------DREARR-LAGYR 206
               L                    + +H +  +                EAR+    Y 
Sbjct: 211 LVYYL-KNNAAPEMDEFNRPLMFFGQSVHDNCPRLKHFDAGEFAPSFESEEARKGWCLYE 269

Query: 207 YGRQIADDYLTQLGQGEEQVARWLEAENDP 236
            G +     +    + +     W      P
Sbjct: 270 LGCKGPST-MNNCPKIKFNQTNWPVEAGHP 298


>UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH
          Length = 330

 Score =  117 bits (294), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 60/239 (25%), Gaps = 44/239 (18%)

Query: 37  SAYVYRVDCGGCNGCEIEIF------ATLSPLFDAERFGIKVVPSPRHAD---------- 80
              V  +  G C GC           A +      E     +  S   A+          
Sbjct: 72  RPSVVWLHFGECTGCSEAFLRTPNVGAIILETISVEYHETIMAASGHQAEKSLEQAIKTH 131

Query: 81  ----ILLFTGAVTRAMRSP---------ALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
               I +  G++  A                A    P   + I+ G C   GGI      
Sbjct: 132 KGKFICVVEGSIATAYNGAYGKVGGRTFLEIANDVIPKAAVTIALGTCAAYGGIPSAAPN 191

Query: 128 VWG--GTDKIVPVD-VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
             G  G    + V  + I GCPP P   L      L    + I     G      AE +H
Sbjct: 192 PGGYKGVKDAIGVATINISGCPPNPLNLLSTIVKYLNK--ETIELDELGRPLFAYAETVH 249

Query: 185 GDMVQPLRVKVDR------EARRLAGYR---YGRQIADDYLTQLGQGEEQVARWLEAEN 234
               +    + D             GY     G +  + Y       +         + 
Sbjct: 250 DRCPRLKHFENDEFVEEFGSKEAELGYCLYHMGCKGPETY-NNCPTAKFNDGTSFPIQA 307


>UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Tax=Bacteria
           RepID=B0TDW1_HELMI
          Length = 395

 Score =  115 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 71/251 (28%), Gaps = 46/251 (18%)

Query: 12  GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP--------LF 63
            +   + ++   A   A  L+  +R   ++R +   C  C      T  P        + 
Sbjct: 51  VMAASLGLEPGAAGAIAEALETKRRMPVIWR-NFQECTCCTESFIRTQHPKASDIIMTMI 109

Query: 64  DAERFGIKVVPSPRHAD--------------ILLFTGAVTRAM---------RSPALRAW 100
             +     +V +   A+              IL   GA+             R+      
Sbjct: 110 SLDYHETLMVAAGHQAEEAVAKAIEDNRGNYILAVEGAIPVKDGGIYCCIAGRTAVDMLK 169

Query: 101 QSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAATLYGF 156
           + A   K  I++G+C  +G +        G      I+     + +PGCP          
Sbjct: 170 EEAKHAKAIIAWGSCAVNGCVQAANPNPTGAVPVQDIIKDKPIINVPGCPAIAEVMAGVI 229

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK--------VDREARR-LAGYRY 207
              L   E+       G         +H    +              D+ A+     Y+ 
Sbjct: 230 THVLT-FERLPELDSQGRPKAFYGHRIHDKCNRRAYFDAGMFVENFDDQGAKEGWCLYKL 288

Query: 208 GRQIADDYLTQ 218
           G +  + Y + 
Sbjct: 289 GCKGPNTYNSC 299


>UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=Thermococcus
           onnurineus NA1 RepID=B6YTV9_THEON
          Length = 225

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 49/147 (33%), Gaps = 13/147 (8%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFTGAVTRA 91
               V  VD GGC GC + I      L D     I  +          D+ + TG     
Sbjct: 2   EKLKVLHVDVGGCEGCNVSIIRAYPKLMDLIELDISYLRKDECKLDEYDVAIITGGACMN 61

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFH---------DLYCVWGGTDKIVPVDVYI 142
                    +        +++G+C    GI             +  +   + ++ VD  I
Sbjct: 62  EPRILEELKEIREKAHTVVAFGSCATFSGILRFCRGGQEPRPDHRNFQPINSVIKVDYSI 121

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHA 169
           PGCPPTP      F   +   E+++  
Sbjct: 122 PGCPPTPQMLQSFFKFYINGDERRLRL 148


>UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subunit n=2
           Tax=Methanopyrus kandleri RepID=Q8TYW2_METKA
          Length = 305

 Score =  114 bits (286), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 61/236 (25%), Gaps = 46/236 (19%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV---------PSPRHADILLFTGA 87
            A +       C GC + +      L D     I++            P H ++ +  G+
Sbjct: 3   KATIATAQLSSCVGCHVSLLDLHEKLLDLLEDAIEIEYCYVLVDQKEIPEHVNVAVIEGS 62

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGG----------------IFHDLYCV--- 128
           +          A +      I ++ G C   GG                +F +       
Sbjct: 63  IRN--EEDLEVAEELREAADIVVAVGTCACYGGVHGLANLYQLDDILEWVFKETPTTDDE 120

Query: 129 --------------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
                              +++ VD  +PGCPP P +        L   E ++       
Sbjct: 121 GETPEEVVPELFGYVRPLPEVIDVDYMLPGCPPKPESIAEVITAILEDREPELPTTNLC- 179

Query: 175 LDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWL 230
            +E P E     + +                           T  G G    +R L
Sbjct: 180 -EECPREKEDIPIEEIKFRTGQGRPDPDKCLLEQGYPCMGPATVAGCGAACPSRGL 234


>UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n=1 Tax=Thermococcus
           gammatolerans EJ3 RepID=C5A2R7_THEGJ
          Length = 229

 Score =  114 bits (284), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 13/147 (8%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFTGAVTRA 91
               V  VD  GC GC + I      L +     I  +          D+ L TG     
Sbjct: 5   EKLKVLHVDFAGCEGCNVSIIRAYPKLMNEIDLDISYLRDGSCQYGEYDVALITGGACMN 64

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIF---------HDLYCVWGGTDKIVPVDVYI 142
                    +     ++ +++G+C + GGI             +  +   + ++PVD  I
Sbjct: 65  EPRILEELKEIREKARVVVAFGSCASLGGILRFARGGQEPRPDHRNFQPINSVIPVDYSI 124

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHA 169
           PGCPPTP      F   +   E ++  
Sbjct: 125 PGCPPTPQMLQSFFKFFMAGNESRLRL 151


>UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit
           [Precursor] n=1 Tax=Desulfotalea psychrophila
           RepID=Q6ARY6_DESPS
          Length = 300

 Score =  114 bits (284), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 70/272 (25%), Gaps = 45/272 (16%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL-- 62
           L  + +  + +  +    +A    +L     +  +   +    C+GC I +  + SP   
Sbjct: 12  LSAKMSVVLGLGSSAIPQVAEALEALTTGRSKVLW---LQAQSCSGCSISMLDSESPGPA 68

Query: 63  -FDAERFGIKVVPSPRHAD-----------------ILLFTGAVTRAMRSPALR------ 98
               +   +    +   A                  IL+  G++   M    +       
Sbjct: 69  ELLTQYISLLFHHTLSAATGESCMHIVRKSVQQGGYILVVEGSIPAGMPEACMMGGIPVG 128

Query: 99  --AWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT--------DKIVPVDVYIPGCPPT 148
               Q+A      I+ G C   GGI        G          +KI    + IPGCP  
Sbjct: 129 ELIKQAAERADYVIALGTCAAFGGIPAAEGNPTGAVPLGPFLQANKIKTPIINIPGCPSH 188

Query: 149 PAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL----AG 204
           P   +                          A   H    +    + +  AR+       
Sbjct: 189 PDWLVGTLVHLCK--FGLPPCDEQRRPKMFFASKNHDKCPRFSDYEQENFARKFSDPGCL 246

Query: 205 YRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
           ++ G      Y     +              P
Sbjct: 247 FKLGCLGVSTYADCTIRDRNGGTNACIKAGAP 278


>UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfitobacterium
           hafniense RepID=Q24VQ2_DESHY
          Length = 319

 Score =  113 bits (283), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 80/288 (27%), Gaps = 50/288 (17%)

Query: 11  NGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-----LFDA 65
             + + +++   IA    +    + +   ++ +   GC GC   + +++ P     + D 
Sbjct: 37  AALGIDLSLAPQIAEAAEA---NLSKKPVIW-MQGQGCTGCSESLLSSVDPGPEEIILDL 92

Query: 66  ERFGIKVV---PSPRHA-----D-------ILLFTGAVTRAM--------RSPALRAWQS 102
                       S   A     D       IL+  G++  A         +    +   +
Sbjct: 93  LSVRYHPTLMAASGEQAVQSLEDCIAQGHYILVLEGSIPTADSRYCFVEGKPFIEQFKLA 152

Query: 103 APDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV--DVYIPGCPPTPAATLYGFAMAL 160
           A   +  I+ G+C   GGI    +    G  +++     V +P CP  P   +      L
Sbjct: 153 AEKAEAVIAVGSCACYGGIPRAGFTGAAGAQEVLEGVKVVNLPSCPVKPDRLVGLLLYYL 212

Query: 161 GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR--------EARRLAGYRYGRQIA 212
                     G    +      LH    +    +           +      Y  G +  
Sbjct: 213 -SHNALPKLDGLNRPEAYYRYTLHDSCYRRWHYEKGEYLEDWNNPDTLDWCLYHKGCKGQ 271

Query: 213 DDYLTQL-----GQGEEQVARWLEAEN--DPRLNEIVSHLNHVVEEAR 253
           D Y         G                 P   +  + L    +E +
Sbjct: 272 DTYTNCANAWWNGGANFCGYAGSPCAGCSQPEYYDGFAPLFVNPKEVK 319


>UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax=Leptospira
           RepID=Q04P25_LEPBJ
          Length = 273

 Score =  112 bits (281), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAY-----VYRVDCGGCNGCEIEIFATLSP 61
            R+A  +     + +    M+   +K+ +++          V   G N  E EI A+ + 
Sbjct: 100 DREALKVTYTNGMPDEKPEMETEEVKRFRKTTKKTGFQFREVAASGNNTTEAEINASFNA 159

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
           LFD+E   I+VV SP+HAD L+++G V   M  P   AW++ P PK  ++ G+   SGG+
Sbjct: 160 LFDSEASKIRVVASPKHADALVYSGPVGPNMEEPLNTAWETMPSPKALVACGSEAVSGGL 219

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           F                D++I G PP P   +  F   +G  E
Sbjct: 220 FKLGKLPKEP-------DLFIGGDPPRPDVIISAFRYLMGTRE 255


>UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax=Euryarchaeota
           RepID=FRHG_METBF
          Length = 259

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 62/222 (27%), Gaps = 37/222 (16%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLF----DAERFGIKV----VPSPRHADILLFT 85
           +     +  V   GC GC + +      L     D       +    V      D+ L  
Sbjct: 1   MTNKIKIGHVHMSGCTGCLVSLADNNLGLIKILDDYADLVYCLTLADVRHIPEMDVALVE 60

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH---------DLYCVWGGTDKIV 136
           G+V            ++    KI ++ G+C   G I             +  +     ++
Sbjct: 61  GSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHESYLPIGDLI 120

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD 196
            VDVYIPGCPP+P        MA  LLE     +       +P               + 
Sbjct: 121 DVDVYIPGCPPSPELIRNVAVMAYLLLEGNEEQKELAGKYLKP---------------LM 165

Query: 197 REARRLAGYR----YGRQIADDYLTQLG-QGEEQVARWLEAE 233
             A+R             I        G          +  E
Sbjct: 166 DLAKRGTSGCFCDLMYDVINQGLCMGCGTCAASCPVHAITLE 207


>UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1U6F3_9DELT
          Length = 328

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 68/250 (27%), Gaps = 55/250 (22%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK----------------------VVP 74
              V  +    C GC   I  T+ P  DA                             V 
Sbjct: 56  RPDVVWLHNAECTGCSESILRTVEPYIDALILDYISLNYHETLMAAAGHAAEKALWDTVA 115

Query: 75  SPRHADILLFTGAVTRAMRS---------------PALRAWQSAPDPKICISYGACGNSG 119
           + ++  + +  G V  A                        +        I+YG C + G
Sbjct: 116 AGKY--VAVIEGGVPTAPAGTANEPGGHGKVGGHTMLENTTKVVEKALATITYGTCASYG 173

Query: 120 GIFH--DLYCVWGGTDKIVP--VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGEL 175
           G+           G D++ P    + +PGCPP P + +      +     ++     G  
Sbjct: 174 GVQKAAPNPTACKGVDELFPGKPIINVPGCPPNPYSLVGTIVYYVTKGVPEL--DSVGRP 231

Query: 176 DEQPAEILHGDMVQPLRVKVD--------REARR-LAGYRYGRQIADDYLTQLGQGEEQV 226
                E +H +  +     +D         EAR+     + G +  + Y       +   
Sbjct: 232 VAFYGESVHDNCPRQEFFNMDQFAPSFGSEEARKGWCLRKLGCRGVETY-NNCPTVKFNQ 290

Query: 227 ARWLEAENDP 236
             W      P
Sbjct: 291 YNWPVQAGHP 300


>UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Desulfitobacterium
           hafniense RepID=B8FWY3_DESHD
          Length = 375

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 70/266 (26%), Gaps = 50/266 (18%)

Query: 19  VDESIASMKASLLKKIK----RSAYVYRVDCGGCNGCEIEIFATLSP------------L 62
           +   I+ +   L K +         +  V+ G C G  I +    SP             
Sbjct: 17  LGNFISLVTPELEKALAQGEINKLPIIMVETGTCTGDSISLDNIWSPTLSDIFTNITEWR 76

Query: 63  FDAE--------RFGIKVVPSPRHAD--ILLFTGAVTRAMRSP--------------ALR 98
           +D           + + +      A   +LL  G++ R                      
Sbjct: 77  YDWTMMQSQGELAYDVLLEIEKNQAHEFVLLVQGSMIRRDGGHYNYAGLENGQLITGLDL 136

Query: 99  AWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPVD--VYIPGCPPTPAATLY 154
             +     K  ++ G C   GG            G   I+P    + + GCP  P   + 
Sbjct: 137 VRRLGLKAKYVVAVGHCATYGGPVAGYPNPTQSTGVQNILPERRVINVSGCPAHPDWIMG 196

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA----RRLAGYRYGRQ 210
                    E ++     G       E +H +  +         A    ++   YR G +
Sbjct: 197 TLLHLALYGEPEL--EKFGRPKMFFGETIHNNCPRRRYYDQGIFATDIGQKECLYRVGCK 254

Query: 211 IADDYLTQLGQGEEQVARWLEAENDP 236
               Y     +       W    N P
Sbjct: 255 GPVTYADCPIRRWNDHYNWPIGCNSP 280


>UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing
           hydrogenase), gamma subunit n=2 Tax=Euryarchaeota
           RepID=Q0W6J6_UNCMA
          Length = 305

 Score =  110 bits (276), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 67/237 (28%), Gaps = 49/237 (20%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLS---PLFDAERFGIKVV----PSPRHADILLFTGAVT 89
              V     G C GCEI +  T     P+ D   F    V         A + + +G V 
Sbjct: 3   KVKVAETWIGACAGCEISVLDTHEALLPILDKIEFVYIPVLMDTKHIPKATVGIVSGCVR 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGG----------------------------- 120
            +         +   +  I ++ G+C   GG                             
Sbjct: 63  NSDN--LHELLEMRKNVDILVALGSCACFGGTPGMANLYTPEQLLEEVYVTTKSTKNEIQ 120

Query: 121 --IFHDLYCV----WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
              + D               V VD  IPGC P PA         LG  E K+  +   +
Sbjct: 121 RHPYMDGLPTLLPDAKPLSDYVKVDAMIPGCGPRPAMIAQAILSLLGAAEYKLSTKSVCD 180

Query: 175 LD-EQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWL 230
               + +E     +++P    +D +            +     T+ G G    +  +
Sbjct: 181 ECAREKSERNLKKILRPFEGTIDEK----KCLFEQGYLCSGSATRAGCGAMCPSSGV 233


>UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria RepID=A1SU83_PSYIN
          Length = 433

 Score =  110 bits (275), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 52/177 (29%), Gaps = 44/177 (24%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP--------RHADILLFTG 86
           K+   +      GC GC +        L +     +++  SP           D+ L  G
Sbjct: 255 KKKLKLATCSLAGCFGCHMSFLDMDERLIELLE-RVELSRSPLNDIKTCAPDCDLGLIEG 313

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------------------- 121
           AV        LR        KI I+ G+C  +GG+                         
Sbjct: 314 AVCNTENIAVLR--HFRESCKIIIAVGSCAINGGVPSLRNNIDVKDCLDEAYLNGIGLVN 371

Query: 122 --------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                      L        +++ VD ++PGCPP   A        L   E ++   
Sbjct: 372 PKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPADAFWKILNDLLDGKEPELPYD 428


>UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=Geobacter
           RepID=Q39QE2_GEOMG
          Length = 316

 Score =  110 bits (275), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 72/272 (26%), Gaps = 69/272 (25%)

Query: 44  DCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADI--------LLFTGAVTRAMRSP 95
               C+GC + I      +       + +   P   D+         L +GA+       
Sbjct: 10  WLSDCSGCHVAIVDLHEKILAVLE-SVTIQRCPVLTDVKDYPKAKLGLVSGAIRTEHDRH 68

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDL------------------------------ 125
           A  A +      + I++G+C   GGI                                  
Sbjct: 69  A--AIEMRKSCDLIIAWGSCAVYGGIAGAGNVHSRQEIIDAVYIGNKTTATHAPPTKEVS 126

Query: 126 --YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH-ARGPGELDEQPAE- 181
                    D ++ VD+Y+PGC P PA         L     +            +  E 
Sbjct: 127 ALEPSVSPLDSVIDVDLYLPGCAPHPAFVFDALLALLEGRSPRTATGESVCARCRRKMEK 186

Query: 182 -------ILHGDMVQPLRVKVDREARRLAGY-RYGRQIADDYL----------TQLGQGE 223
                       +  P R  + +      GY   G    D  +          +      
Sbjct: 187 TEVDRIRKNSEGVPDPDRCFLSQ------GYLCMGSVTLDRCMSPCPLNGIPCSGCAGAT 240

Query: 224 EQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
            QV      +    + E +S L  +  EA +R
Sbjct: 241 MQVLAEPNRDIRTEIAERMSRLTEIPREAIVR 272


>UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax=Leptospira biflexa
           serovar Patoc RepID=B0SCU6_LEPBA
          Length = 273

 Score =  109 bits (273), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/128 (35%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           KR      V  GG N  E E+ A+ + +FD+ER GI+ V SP+HAD ++F+G ++  M  
Sbjct: 136 KRGFLYREVAAGGNNTVESELNASFNSVFDSEREGIRCVASPKHADTIVFSGPISEQMEG 195

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
           P   AW    +P+  I+ G    SGG+F                D+YI G PP P   L 
Sbjct: 196 PLQTAWDVLSEPRALIACGTEAVSGGLFPKGKIPKEP-------DLYISGDPPRPDVILQ 248

Query: 155 GFAMALGL 162
           GF + +G 
Sbjct: 249 GFRLLIGR 256


>UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2H7B9_CHAGB
          Length = 189

 Score =  109 bits (273), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 54/158 (34%), Gaps = 46/158 (29%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            P +V E   S    L+   ++   ++ +  G    C IE+     P +D +R GI    
Sbjct: 74  RPNSVTEYALSTLDGLINWARQG-SLWPMSFG-LACCAIEMMHLSMPRYDNDRQGIIFRA 131

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SPR +D+++  G                                            G D+
Sbjct: 132 SPRQSDVMIVAG--------------------------------------------GVDR 147

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           IVPVD+Y+PGCPPT  A  YG       +         
Sbjct: 148 IVPVDIYVPGCPPTAEALQYGIFQLQKKMAAGQRFTRM 185


>UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehalococcoides
           RepID=D2BG44_DEHSV
          Length = 354

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 69/279 (24%), Gaps = 52/279 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF-DA--- 65
           A G    +++          +  +  +   V  +   GCNGC I     +SP   D    
Sbjct: 15  AAGSTAALSLGALKLPEFEKMFAEALKEIPVIWLQGAGCNGCTISTINVVSPTIQDLLLT 74

Query: 66  -------ERFGIKVVPSPRHAD---------------ILLFTGAVTRAMRS--------- 94
                                D               +L+  G+V               
Sbjct: 75  SVVPGTHVSMQYHPTIMAAQGDLAMSTITDTAAKGPFVLVIEGSVPLKDDGVYAEIGEKD 134

Query: 95  -----PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG--TDKIVP------VDVY 141
                        AP     ++ G C   GGI        G     +I+         V 
Sbjct: 135 GEGITMLEHVLNLAPKALAVVAAGTCSAFGGITASAPNPTGAKAVSEILKEHNITTPVVN 194

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK---VDRE 198
           +PGCPP P   +   A  L      +     G       ++LH    +    +      +
Sbjct: 195 LPGCPPHPDWVVGTLATVLMSGLDALDLDDMGRPKAYYGKLLHDQCPRRGHYEKGLFATK 254

Query: 199 ARRL-AGYRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
                  +  G +    Y     +      RW    + P
Sbjct: 255 LSEPYCLFLVGCKGPVTYADCSDRLWNNKTRWCVEADSP 293


>UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLU1_SYNFM
          Length = 184

 Score =  109 bits (271), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 47/169 (27%), Gaps = 42/169 (24%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF-GIKVVPS------PRHADILLFTG 86
                 +     GGC GC + +      L D      I   P       P   D+ L  G
Sbjct: 5   ASNKVRLATAWFGGCAGCHMSLLDLDERLIDVVGLVDIVYSPVADIKVFPEGVDVTLVEG 64

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------------------- 121
           A           A +     KI I++G C  +G +                         
Sbjct: 65  ACCN--DENVHLAHEVRERSKIVIAFGDCAVTGNVPSMRNRLDRDQMINSVYFEGPGKPP 122

Query: 122 --------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
                      L        +++PVD+++PGCPP P          L  
Sbjct: 123 PTSVLGHFLPTLIPKVLPLHQVIPVDIFLPGCPPDPERIWAAIVALLKG 171


>UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 Tax=Dictyoglomus
           RepID=B5YB68_DICT6
          Length = 180

 Score =  109 bits (271), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 52/175 (29%), Gaps = 43/175 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP--------RHADILLFTGAV 88
              V  V C GC+GC +        L +    G+++  +P           DI +  GAV
Sbjct: 3   KIKVASVWCEGCSGCHMSFLDMDERLVELINKGLEINATPITDLKIPDEGTDIGIIEGAV 62

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------------- 122
                             KI ++ G C   GGI                           
Sbjct: 63  ATDHHE--EEVKMMRERCKIIVALGDCAVFGGIPTMRNYIPREELLERGYITTESTVDGK 120

Query: 123 -------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                            ++++ VD+Y+PGCPP+  A  Y     L     K+   
Sbjct: 121 IPTSPEIGKHLPKTKAVNEVIKVDLYVPGCPPSADAIYYVLKEVLEGRIPKLEGE 175


>UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=4
           Tax=Proteobacteria RepID=Q21RP8_RHOFD
          Length = 188

 Score =  107 bits (268), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 50/173 (28%), Gaps = 44/173 (25%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP----RH---ADILLFTGAV 88
           R   V  V   GC GC +        LFD     I+   SP    +     DI L  G +
Sbjct: 11  RKLKVATVSLAGCFGCHMSFLDIDERLFDLIEH-IEFDRSPLTDIKQVGACDIGLIEGGL 69

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGI--------------------------- 121
                       +     K  ++ GAC  +GG+                           
Sbjct: 70  CN--AENVQVLREFRAHCKTLVAVGACAITGGLPAQRNHLDLGQLLTEVYRSRPGLSAGG 127

Query: 122 -------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                     L        ++V VD  +PGCPP+  A  +  +  +      +
Sbjct: 128 AIPNDPELPLLLNKVHPIREVVHVDYSLPGCPPSADAFWHFLSDLMAGRTPHL 180


>UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, putative n=1
           Tax=Ricinus communis RepID=B9SD17_RICCO
          Length = 188

 Score =  107 bits (268), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPA 150
           M    +R ++  P+PK  I+ GAC  +GG+F  D Y    G DK++PVD Y+ GCPP P 
Sbjct: 1   MAPSLVRLYEQIPEPKYVIAMGACTITGGMFSTDSYSTIRGVDKLIPVDAYLSGCPPKPE 60

Query: 151 ATLYGFAMALGLLEQKIHARGPGELDEQP 179
           A +         L ++I+        E  
Sbjct: 61  AVIDAITKLRKKLSREIYEDRIRSQPENR 89


>UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Nautilia
           profundicola AmH RepID=B9L8N0_NAUPA
          Length = 288

 Score =  107 bits (267), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 61/222 (27%), Gaps = 26/222 (11%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLS--PLFDAERFGIKVVP-----SPRHADILLFTGAVT 89
              V  +D   C GC            LF+   F    +        +  D+L+  GA+ 
Sbjct: 4   KLNVIWIDAVTCYGCTHSFLNYKEISSLFEKVNFEYHPLFLSNDLEIKQCDLLIVEGAL- 62

Query: 90  RAMRSPALRAWQSAP-----DPKICISYGACGNSGGIFHDL--YCVWGGTDKIVPVD--V 140
           +        +            K  ++ G C   GG+F +   Y            D  +
Sbjct: 63  KNNYPRLGYSLNELISKLFFKAKKVLALGTCAVYGGMFGEGLMYNKEQKGHYYKCRDKII 122

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA- 199
            +PGCPP P    +   M      +KI         +  A   H    +    +   +A 
Sbjct: 123 NLPGCPPHPDWIAFVLDMISE--NKKIALDDLNRPKDIFAYTSHMGCTRNEYFEWKIDAE 180

Query: 200 ----RRLAG-YRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
               +     Y  G Q    + +   +              P
Sbjct: 181 NFGTKEGCLFYFQGCQGPFTH-SSCNKVLWNEVSSKPRAGTP 221


>UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n=46 Tax=Bacteria
           RepID=Q3M430_ANAVT
          Length = 181

 Score =  107 bits (266), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 52/180 (28%), Gaps = 43/180 (23%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVP------SPRHADILLFTGAVT 89
              +  V  GGC+GC +        L D   +  +   P       P   D++L  GA+ 
Sbjct: 3   RLKLATVWLGGCSGCHMSFLDLDEWLIDLAAQADVVFSPFADIKEYPEGVDVVLVEGAIA 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG------------------------------ 119
                            +I IS+G C  +G                              
Sbjct: 63  N--EEHLTTIKIVRERSQILISFGDCAVTGNVTALRNPLGSAEPVLQRCYIQAVDINPQI 120

Query: 120 ----GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGEL 175
               GI   L         IVPVD+Y+PGCPP+           L      +  R   + 
Sbjct: 121 PQEPGIVPPLLDRVTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQGKTPHLSGREFIKF 180


>UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax=Euryarchaeota
           RepID=MVHG_METTH
          Length = 308

 Score =  106 bits (265), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 64/244 (26%), Gaps = 51/244 (20%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP----------RHADILL 83
           +     +  +  GGC+GC + I      + D          SP             D+++
Sbjct: 1   MAEKIKIGTMWLGGCSGCHLSIADFHEKIIDVMEH-ADFEFSPVLMDTKYDEIPELDVVI 59

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF--------------------- 122
             G +          A +     K  ISYG C   GGI                      
Sbjct: 60  IEGGIVN--DENREFAEELREKAKFVISYGTCAVYGGIPGLRNLWDKDEVIEEAYINSIT 117

Query: 123 -------------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
                          L        +++ VD  +PGCPP            L   E ++  
Sbjct: 118 TPNEEGVIPSEDVPHLEGRVKPLGEVIDVDFEVPGCPPRSDVAAEAVMALLTGEEIELPE 177

Query: 170 RGPGE--LDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
               E    E+P E L  D ++        +            I     T    G E  +
Sbjct: 178 TNLCEVCPREKPPEGLAMDFIKRQFEV--GKPEDDLCLIPQGLICMGPATVSICGAECPS 235

Query: 228 RWLE 231
             + 
Sbjct: 236 IAIP 239


>UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subunit n=2
           Tax=Campylobacter RepID=B9KFD7_CAMLR
          Length = 544

 Score =  106 bits (265), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 66/225 (29%), Gaps = 39/225 (17%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSP-----LFD---AERFGIKVVPSPRHA---------- 79
             +  +    C GC   +  T  P     +FD    E     +  S   A          
Sbjct: 61  PSLIWLHLSECTGCSESLLRTSLPDFLDLIFDFISLEYHETFMSASGHQAESHLEEVLEK 120

Query: 80  -DILL-FTGAVTRAMRSPA------LRAWQS----APDPKICISYGACGNSGGIFHDLYC 127
            D LL   G V                 ++     A + K   + G C + GGI      
Sbjct: 121 KDFLLAVEGGVCAIDPFYLTIGAHGENGYEILQKCAKNAKTIFAMGTCSSFGGIQAAHPN 180

Query: 128 VWG--GTDKIVPV-DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
                G  K++    + IPGCPP+ A  +      + L EQ +             + LH
Sbjct: 181 PTKSIGISKVLEEKVINIPGCPPSDANIIAALCFYI-LFEQDMALDDQNRPLALYGKCLH 239

Query: 185 GDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARW 229
               +  +     EA   A      +I + Y      G +    +
Sbjct: 240 DLCERKAKF----EAGNFAQSFDDEKIKEGYC-LFKVGCKGPYAY 279


>UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota RepID=A6UVU9_META3
          Length = 227

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 16/146 (10%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKV------VPSPRHADILLFTGAVTRAM 92
           V  V    C GC + +  T   L D      +              ADI+L  G+V    
Sbjct: 4   VAHVQLSSCCGCLVSLTDTYEKLLDVLGAIDLVYSQTIADAREIPEADIILVEGSVCLDD 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIF---------HDLYCVWGGTDKIVPVDVYIP 143
                 A       KI ++ GAC  +GGI            ++  +    ++V  D+ IP
Sbjct: 64  HHAMEIAQDVGKKAKILVALGACAATGGITRFCRGGQMSKPIHSSFSPITEVVKCDLAIP 123

Query: 144 GCPPTPAATLYGFAMALGLLEQKIHA 169
           GCPP+P   +     A+    + +  
Sbjct: 124 GCPPSPEIIVGLITAAIEGDMEYLAP 149


>UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Desulfohalobium retbaense DSM 5692
           RepID=C8X546_DESRD
          Length = 334

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 76/257 (29%), Gaps = 68/257 (26%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA-------------ERFGIKVVPSPRHA- 79
           + R   +     G C GC++ +  T   L +              +     +   P  + 
Sbjct: 1   MSRRMSIAMNWAGACGGCDVSLLDTQGKLLELTAVADVVYWPVALDYKRSDLEALPEKSV 60

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------------ 121
           DI LF G V       A  A +     ++ ++YGAC   GGI                  
Sbjct: 61  DIGLFNGVV--RTSEQAEDARRLRERCRVLVAYGACACHGGIPGLANQSDREEIFRVAYQ 118

Query: 122 -------------------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
                                        +       ++V VD ++PGCPPTP   L   
Sbjct: 119 DTVSTDNPDQIRPQQRTPVPGGEVTLPAFHDSVRALHQVVDVDYFLPGCPPTPERILD-- 176

Query: 157 AMALGLLEQKIHARG--PGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADD 214
              LG+++         P      P   L  +     R +  R  R    YR    +AD 
Sbjct: 177 --LLGVVQAYNAGDDLPPAGSILAPEATLCQECP---RAETRRAGRMPRLYRPHEIVADP 231

Query: 215 YLTQLGQGEEQVARWLE 231
               L QG   +  +  
Sbjct: 232 ETCFLEQGVICMGPFTR 248


>UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Coriobacteriaceae
           RepID=C7MNR7_CRYCD
          Length = 439

 Score =  104 bits (260), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 47/221 (21%)

Query: 40  VYRVDCGGCNGCEIEIFATLSP-----LFDAERFGIKVV------PSPRHAD-------- 80
           V  ++   C GC        +P     + +                S   A         
Sbjct: 64  VIWIEGASCTGCTEAFAQVETPDPATIVLEMISLNYSETLSAAAGYSMEEAKEQTIEAGN 123

Query: 81  -ILLFTGAVTRAM---------RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
            IL++ GAV             +       ++AP     ++ G+C  +GG         G
Sbjct: 124 YILIYEGAVLEKWGGEALRVAGKPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAG 183

Query: 131 --GTDKIVP------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
             G +K +         V IPGCP  P   +      + ++ +        +      E 
Sbjct: 184 AVGVEKFLKESGINVPVVNIPGCPANPEWLVAVLVDVV-MMNKLPALDYENKPALIFDET 242

Query: 183 LHGDMVQPLRVKV---------DREARRLAGYRYGRQIADD 214
           +H +  +    +          + EA+    Y  G +    
Sbjct: 243 IHDNCERRGHFENGEFVYQFGSEEEAKNYCLYAMGCRGPQT 283


>UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteria RepID=MBHS_BRAJA
          Length = 363

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 64/257 (24%), Gaps = 53/257 (20%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
             L        P+  +   +    K            V  +    C  C      +  PL
Sbjct: 26  CSLTATSLGLGPLAASRIANALETKP--------RVPVIWMHGLECTCCSESFIRSAHPL 77

Query: 63  --------FDAERFGIKVVPSPRHADILL--------------FTGAVTRAM-------- 92
                      +     +  +   A+ +L                G              
Sbjct: 78  VKDAVLSMISLDYDDTIMAAAGHQAEAILEETRAKHKGQYILAVEGNPPLNEGGMFCIDG 137

Query: 93  -RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPP 147
            +    +    A D    I++GAC + G +             DK++     + +PGCPP
Sbjct: 138 GKPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNKPIIKVPGCPP 197

Query: 148 TPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK--------VDREA 199
                + G    +    +       G      ++ +H    +              D  A
Sbjct: 198 IAE-VMTGVVTFITTFGKLPELDRQGRPKMFYSQRIHDKCYRRPHFDAGQFVEEWDDEAA 256

Query: 200 RR-LAGYRYGRQIADDY 215
           R+    Y+ G +    Y
Sbjct: 257 RKGYCLYKMGCKGPTTY 273


>UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquificaceae
           RepID=A7BI79_HYDTH
          Length = 345

 Score =  104 bits (259), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 71/247 (28%), Gaps = 50/247 (20%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIF--------ATLSP 61
           +  +  P T               +K    V  ++   C GC               L  
Sbjct: 26  SAVLGFPPTSFGQAVKALE-----LKPKPVVIWLEFQDCAGCTESFIRSTSILPSDVLLD 80

Query: 62  LFDAERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSP---------ALR 98
               E     + PS  +A+              IL+  G+V+   +              
Sbjct: 81  YISLEYHETLMSPSGFYAEEAKREAIEKYKGKYILIVEGSVSPRNKGVYCTVSGKSNVEL 140

Query: 99  AWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAATLY 154
             ++A +  + I+ G+C + GGI H      G     +I+     V IPGCPP     + 
Sbjct: 141 LKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGAVPVSQILGDRQVVNIPGCPPISDVMVA 200

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRV--------KVDREARR-LAGY 205
             A  +   +        G       + +H    +              D  AR+    Y
Sbjct: 201 VIAGFVITGKP-PELDSMGRPKTFYGQTIHDRCYRRPFYNAGKLAGSFDDESARKGYCLY 259

Query: 206 RYGRQIA 212
           + G +  
Sbjct: 260 KLGCKGP 266


>UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hydrogenobaculum sp.
           Y04AAS1 RepID=B4U5S1_HYDS0
          Length = 320

 Score =  104 bits (259), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 64/233 (27%), Gaps = 46/233 (19%)

Query: 28  ASLLKKIKRSAYVYRVDCGG--CNGCEIEIFATLSPLF-DAE-----RFGIKVVPS---- 75
             ++  +K+   +  +   G  C  C   +  + SP+F D        +   +  S    
Sbjct: 37  NDIINALKQKPRIPVLWFHGLECTCCSESLMRSSSPVFSDMVSLISLEYDDLISASCGEN 96

Query: 76  --------PRHAD---ILLFTGAVTRAMRSPA---------LRAWQSAPDPKICISYGAC 115
                           IL   G++T                    ++A   K  I++G+C
Sbjct: 97  LLNYKKKIIEQYKGNYILAIEGSITEFEDGACCMVGGRSFNEELLEAAEGAKAIIAWGSC 156

Query: 116 GNSGGIF--HDLYCVWGGTDKIV--PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
            + G +   +         D I+     V +PGCPP P          L   ++      
Sbjct: 157 ASFGCVQVAYPNPTKSSSVDTIIKNKPIVKVPGCPPIPEVMASVIVYMLLK-DELPPLDS 215

Query: 172 PGELDEQPAEILHGDMVQP---------LRVKVDREARRLAGYRYGRQIADDY 215
                      +H    +           R   +        Y+ G +    Y
Sbjct: 216 KLRPKMFYGMTIHDTCYRKNFYNANKFAERFDDEGSKAGHCLYKLGCKGPSTY 268


>UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminibacter mediatlanticus
           TB-2 RepID=A6DCC1_9PROT
          Length = 369

 Score =  103 bits (257), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 67/273 (24%), Gaps = 50/273 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD----- 64
            +     + +      + A  +  +     V  ++   C G    I     P  D     
Sbjct: 39  VSVTTAMLGLPGFFEPLVAQSINAL-NKIPVIWMNYQDCAGNSESILRASKPTIDEIIIN 97

Query: 65  ---AERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSPA----------- 96
               E   + + PS   A+              +L   G++  A                
Sbjct: 98  LISLEFHELLMAPSGTQAENQLEETIQNYEGEYLLFVEGSIPLADNGVYGTIGPSGETYK 157

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG-----GTDKIVPVDVYIPGCPPTPAA 151
               + A   K  I+ G C + GG+        G     G D I    + +P CP  P  
Sbjct: 158 DHLLRLASKAKAIIAVGNCASFGGVVAANPNPTGATGVMGVDGINVPIINLPACPVNPET 217

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR------EARRLAGY 205
            +    M   L  +              A  +H    + +            +    +GY
Sbjct: 218 MIGVLIMY-ALTGELPELDSLKRPLFAYASRIHDRCERRVHFDAGEFVESFGDNASQSGY 276

Query: 206 RY---GRQIADDYLTQLGQGEEQVARWLEAEND 235
                G +    +       +     W      
Sbjct: 277 CLYKVGCKGPFTF-NNCPTVKFNDTSWPVDAGH 308


>UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit family n=14
           Tax=Campylobacter RepID=Q5HT18_CAMJR
          Length = 497

 Score =  103 bits (257), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 71/273 (26%), Gaps = 43/273 (15%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF 63
           ++       +   +++   I ++     +   ++  +  +    C GC   +     P F
Sbjct: 30  VINEESVKILARHLSLGNEIPALAQRFFQIAPKT-KLVWLHLCECTGCSESLLRADLPSF 88

Query: 64  D--------AERFGIKVVPSPRHA----------D-ILLFTG----------AVTRAMRS 94
           D         E     +  +   A          D IL   G           +     S
Sbjct: 89  DELVFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGES 148

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIF--HDLYCVWGGTDKIV-PVDVYIPGCPPTPAA 151
                 + A   K   + G C + GGI   +       G  +++    V IPGCPP+   
Sbjct: 149 GYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDIN 208

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK--------VDREARRLA 203
            +        L                  + LH    +  + +         D  A+  A
Sbjct: 209 IIATL-SFFALFGVLPELDEQNRPVWAYGKCLHDICERKAKFESGIFAEHFDDEAAKNGA 267

Query: 204 GYR-YGRQIADDYLTQLGQGEEQVARWLEAEND 235
                G +    Y             W  A   
Sbjct: 268 CLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGH 300


>UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=6 Tax=Bacteria
           RepID=B8G3U7_CHLAD
          Length = 177

 Score =  102 bits (255), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 53/173 (30%), Gaps = 43/173 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAER---FGIKVVPS----PRHADILLFTGAVT 89
              +  +  GGC+GC + +      L +           +      P H D+ L  GA+ 
Sbjct: 3   RIRIATIWLGGCSGCHMSLLDLDEWLIELAAQADLVYSPIADVKRFPSHVDVTLIEGAIA 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG------------------------------ 119
                    A  +  + KI +S+G C  SG                              
Sbjct: 63  NN--EHLELAHIARRNSKIIVSFGDCAVSGNVTALRNPLGSPEQLLQQVYIEHSDPRGKI 120

Query: 120 ----GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
               GI   L        +++PVD Y+ GCPP+           L   + ++ 
Sbjct: 121 PHEPGIVPVLLDKVMPVHQVIPVDYYLSGCPPSAPRIRALLEALLTGRKPEVD 173


>UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomiragia
           RepID=C6YT65_9GAMM
          Length = 268

 Score =  102 bits (255), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 52/185 (28%), Gaps = 36/185 (19%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFA------TLSPLFDAERF-GIKVVPSPRHA 79
               LK +     +       C+GC++ +        TL+ + D   F     +      
Sbjct: 3   AQDKLKNLAPRPKIAVHKFSSCDGCQLALINDAVSLLTLAEMVDIVHFAEAGPLDEFADV 62

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF----------------- 122
           DI    G+V      P  R  +     K  I+ GAC  +GGI                  
Sbjct: 63  DIAFIEGSVNTHHDIP--RLQKIREKAKYVIAIGACAVAGGIQALRNYTNAAELLEWQKA 120

Query: 123 ----------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
                      +         + V VD  I GCP T    L      L  +E +      
Sbjct: 121 VYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQILKAIRQLLFGVEPEKVVDPV 180

Query: 173 GELDE 177
               +
Sbjct: 181 CTSCK 185


>UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n=7
           Tax=Deltaproteobacteria RepID=A0LP54_SYNFM
          Length = 324

 Score =  102 bits (255), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 70/243 (28%), Gaps = 68/243 (27%)

Query: 44  DCGGCNGCEIEIFATLSP---------------LFDAERFGIK----VVPSPRHADILLF 84
               C GCEI +                     LFD + FG       +  P  ADI + 
Sbjct: 9   SLSSCAGCEISMLNMGGLFLELLKEIRIVHMPLLFDHKYFGQAGEENFIGIP-EADIGIV 67

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLYCV---- 128
           +G +          A +     +I ++ G C   GGI            F   Y      
Sbjct: 68  SGGIRN--EEQLEVALKVRAQCRILVALGTCATHGGIPALMNRYSDEDLFRRYYRTSETT 125

Query: 129 --WGGTDKIVP--------------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
                 +++VP              VDVY+ GCPP P      F   L            
Sbjct: 126 EAAAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPDYLGAMFRTLLD----------- 174

Query: 173 GELDEQPAEILHGDMVQPLRVK-VDREARRL--AGYRYGRQIADDYLTQLGQGEEQVARW 229
           G+  E P + +          K   ++ RR   +      +   +    L QG   +   
Sbjct: 175 GQWPEMPTKSVCDTCPTRREGKGNVQKIRRFTRSARFQNEKPLSEMKCLLEQGLLCMGPV 234

Query: 230 LEA 232
             A
Sbjct: 235 TRA 237


>UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NPL1_HALUD
          Length = 266

 Score =  102 bits (253), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 46/170 (27%), Gaps = 30/170 (17%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAE------RFGIKVVPSPRHADILLFTGAVTR 90
              V   D  GC G ++++      L D         F   +       +I    G V  
Sbjct: 6   KPRVAFFDFTGCEGDQLQVINLEDRLLDLVEVVEVVSFREAMTEHSDEYEIAFVEGGVAT 65

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFH----------------------DLYCV 128
           A      R      +  + ++ G+C   GGI                          Y +
Sbjct: 66  AHDE--RRLTDIRDNADVVVALGSCAAFGGINALRNHQDFETVKERVYGEDADSITSYPI 123

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
               + ++ V+  IPGCP      L      +   E  I         + 
Sbjct: 124 ARPIEDVIEVEYEIPGCPIDREEFLGAVTALVNGAEPSIPNYPVCLECKF 173


>UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermococcus sibiricus MM
           739 RepID=C6A155_THESM
          Length = 267

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 49/178 (27%), Gaps = 30/178 (16%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS-------PRHADILL 83
           ++++     +       C GC+++       L   ++  I+            +  DI  
Sbjct: 4   VRRMSEKVKIGFYALTSCYGCQLQFAMMDEVLQLLDKANIECWFMLERGSDEDKEVDIAF 63

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF--------------------- 122
             G+V+           +     KI I+ G+C   GG+                      
Sbjct: 64  IEGSVSTQ--EEVELVKKIREKAKIVIAVGSCAVHGGVQSWDKDKEFNELWKTVYGDAHV 121

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
                +    +K + VD  + GCPP     LY     L     +              
Sbjct: 122 KFEPKMAEPVEKYIKVDYKLYGCPPEKKDFLYALGTLLIGSWPEDIDYPVCVECRLRG 179


>UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Methanopyrus kandleri RepID=Q8TXX1_METKA
          Length = 238

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 60/214 (28%), Gaps = 16/214 (7%)

Query: 39  YVYRVDCGGCNGCEIEIF-ATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPAL 97
            V  +    C  C   +         +     ++       ADIL   GAV  A      
Sbjct: 2   KVAVLSLMACGTCARNLEEVCHEEGHEVVWSNLEGDEGEPDADILFVEGAVDFADAETLE 61

Query: 98  RAWQSAPDPKICISYGACGNSGGIF--------HDLYC-VWGGTDKIVPVDVYIPGCPPT 148
           +  ++A      +S G+C  +GG           D Y        K V  D  I GCPPT
Sbjct: 62  KLEEAASAVSTVVSLGSCAATGGFERHVIGMRDPDRYHFTVFPAAKFVETDYAINGCPPT 121

Query: 149 PAATLYGFAMALGLLEQKIHARGP--GELDEQPAEILHGDMVQ--PLRVKVDREARRLAG 204
                          E ++       G+      E+         P+   +    + L  
Sbjct: 122 TDVIASFLRALEEENEDELRPYEVLSGDFHGLTPELSAPVTGPTVPVEDVLLTSNKDLCL 181

Query: 205 YRYGRQI-ADDYLTQLG-QGEEQVARWLEAENDP 236
                 I  D +    G       A  +E +  P
Sbjct: 182 GCDLDVIEKDLFCVGCGTCAASCPAWAIEMDEKP 215


>UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subunit, FrhG n=3
           Tax=Methanobacteriaceae RepID=A5UM99_METS3
          Length = 276

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 19/176 (10%)

Query: 12  GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA---ERF 68
            I     V+E+ A +  +  +       +  +   GC G  + +      + D    E  
Sbjct: 22  KIESAPEVEETAAPVAETKQETATNKPRIGYIHLSGCTGDGMSLTENYD-ILDVVLTEMV 80

Query: 69  GIKV------VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
            I        +      D+ L  G+V            ++     +  ++G+C  +G   
Sbjct: 81  DIVYGQTLVDLWEMPEMDLCLIEGSVCLQDEHSVHELLEAREKSALICAFGSCALNGCFT 140

Query: 123 ---------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
                       +  +     +V VDV +PGCP  P               + +  
Sbjct: 141 TYARGGQQAQPKHESFLPISSLVKVDVALPGCPVAPEMIAKTVVALCNGDMEYLQP 196


>UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2KSS0_9ACTO
          Length = 423

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 75/274 (27%), Gaps = 48/274 (17%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-- 61
           +  P  AN   +  +  E IA +   +     +   V  +    C GC      +     
Sbjct: 55  VGTPVMANAKALRPST-EHIAKVLGEV-----KKPLVAWLQLQECTGCMESTLRSGGTTV 108

Query: 62  ------LFDAERFGIKVVPSPRHA-----------DILLFTGAVTRAM---------RSP 95
                 L       + +  S   A            IL+  G++             +S 
Sbjct: 109 EEVVLNLLSVNYNELVMAASGEAAEKALEEVNAQDHILVVNGSIPVKDGGIYCTIGGKSA 168

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAA 151
                +SA +  + ++ GAC   G +        G  G D+I+     + + GCPP    
Sbjct: 169 QQVLEESAENASMILAVGACAVYGSVQAARPNPTGAVGVDEIIKDKPVINVAGCPPIGEV 228

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQP--------LRVKVDREARR-L 202
                A  L    +       G       + +H    +         +R   D  AR   
Sbjct: 229 ITATLAYILTK-GKAPELDAEGRPLFAYGQRIHDSCPRRPHFDAGQFVRTFDDAGAREGW 287

Query: 203 AGYRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
             Y  G +    +           + W      P
Sbjct: 288 CLYDVGCKGPSTFSPCPIVQWNLKSGWPIGAGHP 321


>UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Proteobacteria
           RepID=A5GFC8_GEOUR
          Length = 378

 Score =  100 bits (250), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 68/243 (27%), Gaps = 45/243 (18%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSP--------LFDAERFGIKVVPSPRHAD--------- 80
             V  +    C GC   +  +  P        +   +     +  S   A+         
Sbjct: 53  PSVIWLHFQECTGCSESLLRSTHPTISTLILDMISLDYHETLMAGSGAQAEKSLHDSMLA 112

Query: 81  -----ILLFTGAVTRAM---------RSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
                +L+  GA+             ++       +A +    IS G C + GGI     
Sbjct: 113 NKGKYLLVVEGAIPTKESGIYCKVGGKTALESLQHAASNAAAIISIGTCASYGGIQSVGP 172

Query: 127 CVWG--GTDKIV--PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
              G  G   IV     + IPGCPP+P   L      L   ++       G         
Sbjct: 173 NPTGAVGVRDIVKDKPIINIPGCPPSPYNLLSTVMYYLT-FKKIPELDALGRPKFAYGRK 231

Query: 183 LHGDMVQPLRVKVDREARRL------AGYR---YGRQIADDYLTQLGQGEEQVARWLEAE 233
           +H    +       R A+         GY     G +    Y     Q   +V  W  + 
Sbjct: 232 IHEHCERRPHFDAGRFAKAYGDDTHAQGYCLFKLGCKGPATYANCSVQRFNEVGVWPVSV 291

Query: 234 NDP 236
             P
Sbjct: 292 GHP 294


>UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Candidatus
           Desulforudis audaxviator MP104C RepID=B1I576_DESAP
          Length = 317

 Score =  100 bits (248), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 71/253 (28%), Gaps = 69/253 (27%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAER-FGIKVVP---SPRHA----------DIL 82
              +       C GC++ I      + D      I   P     ++A          D+ 
Sbjct: 3   KLKLASYWAAACGGCDVAILDIHEKIVDVAAVADIVFWPIAVDFKYADVEGYEDGFIDVC 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI--------------------- 121
           LF GA+  +      +        K+ +++G+C  SGGI                     
Sbjct: 63  LFHGAIRNSEGEHVAKLL--RKKSKVMVAFGSCAISGGIPGLANFKQKNDIFYRVYIESQ 120

Query: 122 ----------------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
                                   + Y        +V VD ++PGCPPT A       + 
Sbjct: 121 STQNPEKVYPQTHYAVPEGVLELPEFYKEVKSLSDVVDVDYFMPGCPPTSAQIWAVIQVI 180

Query: 160 LGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQL 219
                        G       + L        R K D++ ++   Y+  + I D     L
Sbjct: 181 ASGALPPK-----GAFVGCENQTLCNTCT---RTKTDKKVKKF--YQPYQIITDPEKCLL 230

Query: 220 GQGEEQVARWLEA 232
            QG   +     A
Sbjct: 231 EQGLTCMGPVTRA 243


>UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Rhodomicrobium vannielii ATCC 17100
           RepID=D2LGK5_RHOVA
          Length = 358

 Score = 99.8 bits (247), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 51/220 (23%), Gaps = 54/220 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP----LFDAERFGIKVVPSPRHA------------- 79
              +  +  GGC GC + +    SP      D  R  +   PS   A             
Sbjct: 23  RLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYHALIARIL 82

Query: 80  ------DILLFTGAVTRA-------------MRSPALRAWQSAPDPKICISYGACGNSGG 120
                 DIL   GA+ R               +       + A      I+ G+C   GG
Sbjct: 83  SGQQPLDILCVEGAILRGPNGTGRFHLQPGTGKPVMQLVAELAACAGHVIAIGSCTAYGG 142

Query: 121 IFHDLYCVWGGTDKIVP------------------VDVYIPGCPPTPAATLYGFAMALGL 162
           +      V                             + I GCP  P   +         
Sbjct: 143 VSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPAINIAGCPTHPGWIVETLVQLGDG 202

Query: 163 LEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL 202
                     G        ++H    +    +    A+  
Sbjct: 203 TFSASDLDTYGRPRFYADHLVHHGCTRNEFYEYKASAKEP 242


>UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n=9
           Tax=Desulfovibrio RepID=PHNS2_DESVH
          Length = 324

 Score = 99.8 bits (247), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 70/272 (25%), Gaps = 51/272 (18%)

Query: 11  NGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI 70
             + V M +    A   A  L+   R   V  +    C GC   +  ++ P  D     +
Sbjct: 31  GIVAVAMGMGPGFAPAVAEALQAKGR-PSVVYMHGAECTGCTEGLLRSIDPFIDILMMEV 89

Query: 71  K----------------------VVPSPRHADILLFTGAVTRAM---------RSPALRA 99
                                   + +P    +    GA+              +     
Sbjct: 90  ISLDYCETVMAAAGRAAHHALEDALRNPAGY-VCTIEGAIPTRKGGVYGQVGGETMLSLF 148

Query: 100 WQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPV----DVYIPGCPPTPAATL 153
            + A   K  I+ G C + GGI        G  G  + +       + I GCPP P   +
Sbjct: 149 SRVASGAKAVIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPINIAGCPPNPVNYI 208

Query: 154 YGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR--------EARR-LAG 204
                 L     ++     G         +H    +      D         EAR     
Sbjct: 209 GTVVHLLTKGMPEL--DSAGRPKMFYGTTVHDQCERRKHFNADEFAPGFESKEAREGWCL 266

Query: 205 YRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
           ++ G +    Y       +     W      P
Sbjct: 267 HKLGCRGPYTY-NNCPTAQFNQVNWPVRAGAP 297


>UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
           RepID=UPI0000E81815
          Length = 187

 Score = 99.8 bits (247), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 54/173 (31%)

Query: 7   PRDANGIP----VPMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSP 61
           P+ +  +P    VP +  E I +    L+   +R S +   +    C             
Sbjct: 63  PKSSAVVPKKSYVPTSRGEYIVTKLDDLINWARRTSLWPSMLAQQNC------------- 109

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
                                         +    L    + P+         C N GG 
Sbjct: 110 -----------------------------HLHPALLGLSAAEPEDG-------CANGGGY 133

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       ++++   +    
Sbjct: 134 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRERKLQIWYR 186


>UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteobacteria
           RepID=Q31DZ5_THICR
          Length = 813

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 61/220 (27%), Gaps = 44/220 (20%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFD--------AERFGIKVVPSPRHAD------- 80
               V  ++   C G       T++P  D         +   + +  S  H++       
Sbjct: 539 NKVPVIWLELADCTGNSEAFIKTVNPTIDELILKFISLDYHELLMAASGPHSETRLDQLI 598

Query: 81  -------ILLFTGAVTRAMRSPALRA-----------WQSAPDPKICISYGACGNSGGIF 122
                  IL+  GAV   M    LR             + A      ++ G+C   GG+ 
Sbjct: 599 EEDQGDYILIVEGAVPLGMGGNFLRIGPQGETGEALLKRVAQHASAVMAVGSCAFDGGVV 658

Query: 123 HDLYCVWG--GTDKIVPVD--VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
                  G  G  + +  D  + +PGCP  P   +      + +  +        +    
Sbjct: 659 AAAPNPTGAVGVSEALGRDDIINLPGCPVNPINVVGTLLHYI-MFAEMPELGDNNKPVWA 717

Query: 179 PAEILHGDMVQPLRVKVDREARRL------AGYRYGRQIA 212
            A  +H +  +          +         G+       
Sbjct: 718 YAPRVHDNCERRGHYDAGEFVKEWGDEGAKKGWCLFEMGC 757


>UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1
           Tax=Sulfurihydrogenibium azorense Az-Fu1
           RepID=C1DUT4_SULAA
          Length = 249

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 29/169 (17%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV------VPSPRHADILLFTGAVTRAM 92
            V       C+GC++        L + E F I        V +  + D     G+V+   
Sbjct: 2   RVGIFKFSSCDGCQLSFINLSGELAELENFSIDYFLEGQSVNNYEYFDFSFVEGSVST-- 59

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIF-----------HDLYCVWG----------G 131
                R        K+ +  GAC  SGG+              +Y               
Sbjct: 60  TEEIERIKDIRERSKVLVGIGACAVSGGVQSIRNFRNIDDIKTVYNTVDITKNVLENALP 119

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
             ++V VD  I GCP +           L       +        ++  
Sbjct: 120 ISQVVKVDFEIRGCPVSTDVVKDFINSILIGKSPHNYNYPVCLECKRRG 168


>UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Tax=Bacteria
           RepID=Q2LYD8_SYNAS
          Length = 253

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 34/178 (19%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH---------ADI 81
           ++++     V   D   C GC++++      L D    G   V   R           D+
Sbjct: 1   MERMLMKPKVAFFDFACCEGCQLQVANLGEALLDI--LGAIDVVEFREVMSEKWDKNYDV 58

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG----------------IFHDL 125
            +  G++T        R  +      + I+YG+C   GG                ++   
Sbjct: 59  AIVEGSITDEHAE--QRIRKIRDRSAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVYGKD 116

Query: 126 YC-----VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           Y            ++V VD +I GCP      +     AL  +   +         + 
Sbjct: 117 YQLFDSKKTRPIHQVVKVDYFINGCPVYHPEVIEVLKCALRGVPYAVPDNPVCSECKL 174


>UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clostridium botulinum
           RepID=B2TM84_CLOBB
          Length = 313

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 64/236 (27%), Gaps = 47/236 (19%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP--------LFDAERFGIKV 72
           E I      +  + K       ++  GC G  I +  +  P        L +   FG   
Sbjct: 34  EMIDKATEEIKARNKEKINAIWLETSGCFGEVISLLNSEMPDLPFVLKNLVNMTFFGSIC 93

Query: 73  --------------VPSPRHADILLFTGAVTRAMRS--------------PALRAWQSAP 104
                         + S +   ILL  GA+                          Q+A 
Sbjct: 94  GDQGEKAYERILDTLNSDKEY-ILLVCGAIPINADGLYTVLATYQGRKITAMELVKQAAQ 152

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGT---DKIVPVD-VYIPGCPPTPAATLYGFAMAL 160
             K  IS G C   GG       V       + ++  D + IPGCP  P  TL      +
Sbjct: 153 KAKYIISIGTCACYGGPTAAKPNVSQALSVKEYLMRNDIINIPGCPANPVWTLGTVGYLI 212

Query: 161 GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARR----LAGYRYGRQIA 212
                 I     G       + +H    +         A++       Y  G +  
Sbjct: 213 NYGT--IDLDEEGRPVAFYGKTIHEICPKRKFFDKGIFAKKLGNPECLYELGCKGP 266


>UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=Methanococcus
           RepID=FRHG_METVO
          Length = 243

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 32/164 (19%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDA----------------------ERFGIKVVPS 75
             +  +   GC GC I +  T   L D                       +   +     
Sbjct: 2   VKIAHIHMSGCTGCLISLTDTYEKLLDILGSVELVYALTLTGEKTEITETDDKILIERDI 61

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKI-CISYGACGNSGGIFH---------DL 125
           P   DI L  G+V             +  + K   ++ GAC  SGG+             
Sbjct: 62  PGGIDIALVEGSVCLDDHHSMDDILTTRKNSKKSLVALGACAASGGVTRFRRVGQMSQPS 121

Query: 126 YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
           +  +     ++ VD+ +PGCPP+  + +     AL    + +  
Sbjct: 122 HASFVPIGDVIKVDLALPGCPPSTESIVKLLTAALEGDMEYLEP 165


>UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gamma (VhuG) n=1
           Tax=Archaeoglobus fulgidus RepID=O28898_ARCFU
          Length = 293

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 58/219 (26%), Gaps = 41/219 (18%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP---------SPRHADILLFTGAVTR 90
           V      GC+GC + +      + D  R  +                  D     G +  
Sbjct: 4   VAFYIAHGCSGCTMSMLDLGERMNDF-RMRVAWAAPTLGDGKYDRIPEVDYAFIEGGI-- 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIF---------------------------- 122
            +        +     +  +++G C + GGI                             
Sbjct: 61  GLSEHVEIVRELREKSETLVAFGICASCGGIMGLANLHSKEEILEDVFGSAKSSVGDLRI 120

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ-KIHARGPGELDEQPAE 181
            ++       D +V VD YI GCPPTP      F              +   E   +   
Sbjct: 121 PEMLEFVKPLDSVVEVDCYIGGCPPTPEQIYNAFKAIFEGERGWITSGKSVCEFCSRNLS 180

Query: 182 ILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLG 220
              G++ + LRV       +     +G     D +    
Sbjct: 181 EKFGEVSRFLRVPDKECFLKQGILCFGPATQGDCMASCP 219


>UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound
           hydrogenase small subunit)
           (Hydrogen:quinoneoxidoreductase) n=3 Tax=Bacteria
           RepID=C1DUF2_SULAA
          Length = 416

 Score = 97.5 bits (241), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 72/251 (28%), Gaps = 47/251 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD----- 64
            + +   + +  S   + A   + + R   ++ ++   C+G    +  + +P  D     
Sbjct: 74  VSMMTATLMLPPSFEPLVAQAAEVMNRVPVIW-INIQDCDGNTEALIRSSAPTVDELILD 132

Query: 65  ---AERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSP----------AL 97
               E     +  +   A+              +L   G++   M               
Sbjct: 133 YLSIEYQETLMAAAGDQAEKCLEDAVKTFKGQYLLFVEGSIPVKMEYAFTTGRHPETGVQ 192

Query: 98  RAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVP--VDVYIPGCPPTPAATL 153
           R  + A D K  I+ GAC + GG+        G  G   +V     V IP CP  P   +
Sbjct: 193 RVRRLAKDAKAVIAVGACASFGGVPAAYPNPTGAVGVMDVVSGVPVVNIPACPANPVNIV 252

Query: 154 YGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV--------DREAR-RLAG 204
                 + L                    +H +  +              D  A+     
Sbjct: 253 GVIMHYV-LTGSLPELDSLKRPKFAFGYRIHDNCERRAHFDAGEFVEEWGDEGAKNNFCL 311

Query: 205 YRYGRQIADDY 215
           Y+ G +    +
Sbjct: 312 YKMGCKGPFTF 322


>UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermococcaceae
           RepID=B6YSK0_THEON
          Length = 246

 Score = 97.5 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 42/169 (24%), Gaps = 29/169 (17%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP-------RHADILLFTGAVT 89
              +   +   C GC + I      LFD   F                H D+ L TG V+
Sbjct: 4   KLKLAVFELTDCGGCALNILFLYEKLFDLLEFYEITEFHMATSLSEGSHYDVALVTGTVS 63

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG---------------GIFHDLYCVWGGTD- 133
                      ++       I+ G C   G                ++ D        D 
Sbjct: 64  SQRDLAL--LKEARNHSDYLIALGTCATHGSVQASVEGSIREKLKRVYGDEGNPMRALDS 121

Query: 134 ----KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
               + V VD  +PGCP                +E            + 
Sbjct: 122 KPVVEYVAVDFALPGCPYDKNEVYQVLMDIAKGIEPVKKDYPVCVECKL 170


>UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=Methanocella
           paludicola SANAE RepID=D1Z1F3_METPS
          Length = 235

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 16/142 (11%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVPSPRHA------DILLFTGAVT 89
                 V    C+GCEI        L D  +   I+ +   + A      DI+   GA  
Sbjct: 3   KPKFAYVHLAACSGCEISFLDNFERLLDMMDMVDIEYMTLIKDATDIPKVDIVFVDGAAC 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGN---------SGGIFHDLYCVWGGTDKIVPVDV 140
                      ++  +    +++G C +          G +    +  +    ++V VD 
Sbjct: 63  LQSEDAVETLKKARENATYLVAWGGCSSTATINNFSRGGQLPQPQHESFPPIKRLVKVDA 122

Query: 141 YIPGCPPTPAATLYGFAMALGL 162
            +PG PP P          +  
Sbjct: 123 SVPGSPPGPGMAYNVIRAFVEG 144


>UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helicobacter bilis ATCC
           43879 RepID=C3XE47_9HELI
          Length = 593

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 45/230 (19%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK---------------VVPSPRHAD-- 80
             V  +    C GC   +  T +P F+   F I                 V +  HA+  
Sbjct: 65  LKVVWLHLQECTGCSESLLRTETPSFEVLLFDIFKIVYHDLVMVSSGHGAVAALEHANSH 124

Query: 81  ---ILLFTGA---------VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
              +LL  G+         +T   R+          + +   + G C + GGI       
Sbjct: 125 EKYVLLVEGSIPMGFAKDYITLGDRNGYDEISHLIHNAEAVFAIGTCSSFGGIQSAYPNP 184

Query: 129 WGG--TDKIVPVD-VYIPGCPPTPAATLYGFAMA--------LGLLEQKI--HARGPGEL 175
             G    +I   + + +PGCPP+    +              L  L++ +  +++   +L
Sbjct: 185 TNGHALSEIFEREIINVPGCPPSDKNIVATLLYYYLFAESPSLDTLKRPLWAYSKSVHDL 244

Query: 176 DEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQ 225
            E+ +  + GD V+       +E      Y+ G +    Y     + +  
Sbjct: 245 CERKSSFMAGDFVESFDDSNMKEG--YCLYKVGCKGPYTY-NNCPKVKFN 291


>UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit FrhG n=1
           Tax=Methanobrevibacter ruminantium M1
           RepID=UPI0001C420D3
          Length = 319

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 17/149 (11%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFA----TLSPLFDAER--FGIKVVP--SPRHADIL 82
           ++K+     +  +   GC G  + +        + L D     +G  +V        D+ 
Sbjct: 84  VEKVADKPKIGYIHMSGCTGDGMSLTENYDILSTLLTDMVDIVYGTTLVDLWEMPEMDLA 143

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG---------IFHDLYCVWGGTD 133
           L  G+V            +      +  ++G+C  +G          +    +  +    
Sbjct: 144 LVEGSVCLQDEHSVKELMEVREKAGLVCAFGSCAMTGCFTRYARGGQLAQPKHESFVPIS 203

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGL 162
            +V VD  IPGCP +P          +  
Sbjct: 204 DLVKVDCAIPGCPASPEIIAKVVVALING 232


>UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteriaceae
           RepID=B2N3C8_ECOLX
          Length = 124

 Score = 96.7 bits (239), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 2/115 (1%)

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           +DV+IPGCPPTPAAT++GFA+ALGLL+QKIHA    +      + L   +    R+ ++R
Sbjct: 6   IDVWIPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIER 65

Query: 198 EARRLAGYRYGRQIADDYLTQLGQGE--EQVARWLEAENDPRLNEIVSHLNHVVE 250
           EARRLAGYR GR+I D  L  L       +V  WL   +DPRLN IV  L  V+ 
Sbjct: 66  EARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLRDADDPRLNSIVQQLFRVLR 120


>UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n=8 Tax=cellular
           organisms RepID=A4YF94_METS5
          Length = 322

 Score = 96.3 bits (238), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 58/240 (24%), Gaps = 57/240 (23%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERF----GIKVVPSPRHA---------------- 79
           +  +  G C G  + +     P  D   F     +K++  P  +                
Sbjct: 4   LLWLQGGACGGNTLSVLNASDP--DILSFLYQNNVKLLWHPSLSQECGRDLKKILESIIE 61

Query: 80  -----DILLFTGAV--------TRAM---RSPALRAWQSAPDPKICISYGACGNSGGIFH 123
                DILLF G++        T  M   +       + AP     ++ G C + GGI  
Sbjct: 62  GKINLDILLFEGSIVRGPAGKGTFNMFAGKPMMWWVREIAPQANYIVAVGDCASFGGIPA 121

Query: 124 DLYCVW---------GGTDKIVPVD---------VYIPGCPPTPAATLYGFAMALGLLEQ 165
                                +  D         + + GCP  P   +    + L     
Sbjct: 122 ADPNPTESTGLQFHRKEMSGFLGKDFRCKSGLPVINLSGCPVHPEWLITTLTLILRGEMN 181

Query: 166 KIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQ 225
           +             A        +          +   G++ G    D            
Sbjct: 182 QEMLDEFNRPRIFYATTTQFGCPRQPYFTYKISTKEF-GHKEGCLFFDLGCRGSYTRSSC 240


>UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R9W3_AMMDK
          Length = 319

 Score = 96.3 bits (238), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 66/255 (25%), Gaps = 69/255 (27%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER-FGIKVVPS------------PRHA- 79
           +     +       C GC++ I  T     D  +   I  +P             P    
Sbjct: 1   MAEKLKIASYWAADCGGCDVAILDTHEKFLDIVQAADIVFMPIAVDIKEKDVEAFPDGYI 60

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------------ 121
           D+  F GA+  +      +        K+ +++G+C   GG+                  
Sbjct: 61  DVCFFHGAIRNSENEHMAKLL--RRKSKVLVAFGSCAMMGGVPGLANFKDREGILSRVYF 118

Query: 122 -------------------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
                                        Y        +V VD ++PGCPP     +  F
Sbjct: 119 ESPSTDNPDKVLPQTETQVREGVLTLPAFYEEVKTLADVVDVDYFMPGCPPASHQIVNVF 178

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYL 216
              +            G +     + +  +  +    K     +R   YR    I D   
Sbjct: 179 QAIVAGNLPPK-----GSIVGASTKSVCEECSRIKENKT---IKRF--YRVHEIIPDPER 228

Query: 217 TQLGQGEEQVARWLE 231
             L QG   +     
Sbjct: 229 CLLEQGIPCMGPATR 243


>UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacteria
           RepID=MBHS_OLICO
          Length = 360

 Score = 96.3 bits (238), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 56/220 (25%), Gaps = 45/220 (20%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPL--------FDAERFGIKVVPSPRH-----AD------ 80
           V  +    C  C      +  PL           +     +  +        AD      
Sbjct: 54  VLWLHGLECTCCSESFIRSAHPLVKDVVLSMISLDYDDTLMAAAGHQAEAALADTIERYK 113

Query: 81  ---ILLFTGAVTRAM---------RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
              IL   G               +    +   +A   K  IS+G+C + G +       
Sbjct: 114 GNYILAVEGNPPLNEDGMFCIIGGKPFVDQLRYAAKHAKAIISWGSCASHGCVQAARPNP 173

Query: 129 WG--GTDKIV--PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
                  +++     + +PGCPP            L    +       G      ++ +H
Sbjct: 174 TRATPVHQVITDKPIIKVPGCPPIAEVMTGVITYMLT-FGKLPELDRTGRPKMFYSQRIH 232

Query: 185 GDMVQPLRVK--------VDREARR-LAGYRYGRQIADDY 215
               +              D  ARR    Y+ G +    Y
Sbjct: 233 DKCYRRPHFDAGQFVESFDDEGARRGYCLYKVGCKGPTTY 272


>UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria RepID=Q59113_9BACT
          Length = 179

 Score = 96.3 bits (238), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 53/175 (30%), Gaps = 44/175 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP-------RHADILLFTGAVT 89
            A V       C GC +        L D  +  ++++ SP        + D+ + +G + 
Sbjct: 3   KAKVATFWLEACAGCHMSFLDLDERLIDLFQ-NVEILFSPIVDAKDIPNIDVGVLSGGLG 61

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLYCVWG--- 130
                    A +     K  +++G C   GGI                + +         
Sbjct: 62  N--VEEVELAKKMRERCKYLVAWGDCAVFGGINCMRNFIPKDVVLREGYIETASTVNPQG 119

Query: 131 ---------------GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                            D  V VDVY+PGCPP      Y F   L     K+ + 
Sbjct: 120 IVPSEDIPELLPRALPIDYEVKVDVYVPGCPPDADTIYYVFKELLAGRVPKVPSE 174


>UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=uncultured methanogenic archaeon RC-I
           RepID=Q0W2X8_UNCMA
          Length = 232

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 16/142 (11%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVPSPRHA------DILLFTGAVT 89
                 V    C+GCEI        + D  +   I  +     A      D+L   GA  
Sbjct: 3   KPKFAYVHLAACSGCEISFLDNFERVLDMMDMVDIDYMTLIADATEIPKVDLLFVDGAAC 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGN---------SGGIFHDLYCVWGGTDKIVPVDV 140
              +       ++  +    +++G C +          G      +  +    ++V VD 
Sbjct: 63  LQSKESVESLKKARENTGFLVAWGGCSSTATINNFSRGGQSPQPQHESFPQISRLVKVDA 122

Query: 141 YIPGCPPTPAATLYGFAMALGL 162
           ++PG PP P          +  
Sbjct: 123 FVPGSPPGPEMAYNVIRAFVEG 144


>UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Proteobacteria
           RepID=C6NZV2_9PROT
          Length = 371

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 73/266 (27%), Gaps = 46/266 (17%)

Query: 12  GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD------- 64
            +   + +  S+AS+ A  + K +R   V  +    C GC   I  + SP  +       
Sbjct: 34  SLAALLALPPSMASVMAEAISKARRQ-SVIWLSFQECTGCTESITRSHSPTLESLIFEMI 92

Query: 65  -AERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSPA--------LRAWQ 101
             +        S   A+              +++  G++       +            +
Sbjct: 93  SLDYHHTLQAASGEAAEHARLQAMKDNEGKYLVIVDGSIPMGNPGYSAIAGISNHDMLVE 152

Query: 102 SAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAATLYGFA 157
           +A      ++ G C   GGI        G      IV     + +PGCPP P       A
Sbjct: 153 TAKGAAAIVAVGTCATYGGIPMADPNPTGAVPVSDIVKDKPIINVPGCPPIPVVMTGVLA 212

Query: 158 MALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV--------DREARR-LAGYRYG 208
             L            G       E +H    +              D  AR     ++ G
Sbjct: 213 HFLT-FGGIPELDALGRPKSFYGETIHDRCYRRPFYDQGKFAETFDDEAARNGWCLFKLG 271

Query: 209 RQIADDYLTQLGQGEEQVARWLEAEN 234
            +    Y       +         E+
Sbjct: 272 CKGPVTY-NACATTKWNDGTSFPIES 296


>UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n=10
           Tax=Deltaproteobacteria RepID=PHSS_DESBA
          Length = 315

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 58/258 (22%), Gaps = 58/258 (22%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPL-----FDAERFGIKVV--------PSPRHADI 81
            + A V  V   GC GC + +   + P       D                       +I
Sbjct: 37  AKKAPVIWVQGQGCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEI 96

Query: 82  ---------LLFTGAVTR-------------------AMRSPALRAWQSAPDPKICISYG 113
                    LL  GA+                        +        AP     ++ G
Sbjct: 97  AEKFNGNFFLLVEGAIPTAKEGRYCIVGETLDAKGHHHEVTMMELIRDLAPKSLATVAVG 156

Query: 114 ACGNSGGIFHDLYCVWG--------GTDKIVPVDVYIPGCPPTPAATLYGFAM-----AL 160
            C   GGI      V G          +KI  + V +PGCPP P   +            
Sbjct: 157 TCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLN 216

Query: 161 GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA----RRLAGYRYGRQIADDYL 216
                       G       + +H +     +      A    +       G +    Y 
Sbjct: 217 PTEHPLPELDDDGRPLLFFGDNIHENCPYLDKYDNSEFAETFTKPGCKAELGCKGPSTYA 276

Query: 217 TQLGQGEEQVARWLEAEN 234
               +       W     
Sbjct: 277 DCAKRRWNNGINWCVENA 294


>UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silvestris BL2
           RepID=B8ERX2_METSB
          Length = 190

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 46/172 (26%), Gaps = 43/172 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP---LFDAERFGIKVVPS----PRHADILLFTGAVT 89
              +      GC GC + +         L D     +          R  D+    G  +
Sbjct: 13  KPRLATCSLTGCFGCHMSLLDIDERILELIDLVDLDVSPFDDKKSFDRPVDVGFVEGGCS 72

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV--------------------- 128
                      +     +I +S GAC  +GG+      V                     
Sbjct: 73  N--EYNVKELIEFRKHCRILVSVGACAINGGVPAMRNTVGLRECLEAVYLHGVSLEGGGM 130

Query: 129 -------------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                           + ++V +D ++PGCPP+  A        L   E  +
Sbjct: 131 IPNDEDLPLLLDRVYPSHEVVKIDYFLPGCPPSGDAIWAALKALLTGTEPAL 182


>UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU12_9AQUI
          Length = 252

 Score = 94.8 bits (234), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 50/171 (29%), Gaps = 27/171 (15%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH----ADILLFTGAVT 89
           +K    V       C+GC+         L++   F    +    +     DI    G+V+
Sbjct: 1   MKNKLRVGVFKLSSCDGCQAIFLDL-PSLWEHLDFRYWFLGKSENKLEPIDIAFVEGSVS 59

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI-----------FHDLYCV---------W 129
                 A    +     ++ ++ GAC  SGGI           F  +Y            
Sbjct: 60  TQ--EEAEFIKEVREKARLLVTIGACATSGGIQALRNFGSLEEFSSVYPKPEFIKVLKRS 117

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
               + V VD  I GCP  P          L     +I +       +   
Sbjct: 118 TPISEHVKVDYEIYGCPINPHILENFVKALLHSRRPEIPSYPLCMECKLRG 168


>UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=D2REQ3_ARCPR
          Length = 321

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 69/256 (26%), Gaps = 70/256 (27%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVV-------------PSPRHA-DIL 82
             +  +  GGC GC++ +      L D  E   I                  P  + D+ 
Sbjct: 3   LKLAYLLVGGCGGCDMAVVDLSEKLVDALEHLEIVFWAPTVADVKYKDLEAMPDQSIDLG 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------FHDLY---- 126
           L +G V        ++        KI +++G C   GGI            F + Y    
Sbjct: 63  LISGMVRNKENEHLVKV--MRQKCKIIVAFGICAALGGIPGMANMHKNEELFENAYIKSP 120

Query: 127 ---------------------------CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
                                            D+++ VD Y+ GCPP            
Sbjct: 121 STDNPNNVIPQPVSKEGEFELTLPEFLDRVKPIDEVIEVDYYVGGCPPHHDHVAKVVEAV 180

Query: 160 LGLLEQKIHARGPGELDEQPAEILHGDMVQP--LRVKVDREARRLAGYRYGRQIADDYLT 217
           +           P        + +     +   ++ K     + +   R    I D+   
Sbjct: 181 ITGNLP------PKGSWITNGKAVCDVCARNPAVKGKTREFVKEVK--RMHEGIPDEEEC 232

Query: 218 QLGQGEEQVARWLEAE 233
            L QG   +    + +
Sbjct: 233 LLNQGYLCLGPVTQGD 248


>UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Pelotomaculum
           thermopropionicum SI RepID=A5D1L0_PELTS
          Length = 332

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 58/257 (22%), Gaps = 45/257 (17%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG-IKVVPSP------ 76
             ++ SL    +    V  +    C GC I +  ++ P  +      I +   P      
Sbjct: 27  PELQESLALAAEGKPPVIWLQGASCTGCSISLLNSVDPAIEKVILDVISLRYHPNISAAS 86

Query: 77  -------------RHAD--ILLFTGAVTRAMRS--------------PALRAWQSAPDPK 107
                         H D  IL+  GA+                                K
Sbjct: 87  GHFVAEIMDEMLLSHKDQFILVVEGAIPLKNDGKYCTIAEKNGREITMLKAVQVLGNAAK 146

Query: 108 ICISYGACGNSGGIFHDLYCV----WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
             I+ G C + GGI                      + I  CP  P   L      L   
Sbjct: 147 AVIAAGQCASYGGIPGGAPNPTGVVGVKKVVTKKPVINISLCPMHPDHFLGTVVYIL-KY 205

Query: 164 EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA----RRLAGYRYGRQIADDYLTQL 219
                    G       + +H   ++       R A            G +    Y    
Sbjct: 206 GDIPPLDRYGRPAMFYPKPIHESCLRRPYFDSGRFASFIGDEGCLALLGCKGFVGYADCP 265

Query: 220 GQGEEQVARWLEAENDP 236
            +G      W      P
Sbjct: 266 VRGWNNNVNWCIKAGAP 282


>UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=10
           Tax=Chlorobiaceae RepID=B4SFA2_PELPB
          Length = 258

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 51/167 (30%), Gaps = 27/167 (16%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF-GIKVVP--SPRH---ADILLFTGAVT 89
               +   D   C GC++++    S L D      I+     S       DI L  G+++
Sbjct: 13  ERLKIASFDFTCCEGCQLQLANRESTLADFLNLLDIRNFRELSSEQHDDYDIALIEGSIS 72

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLY---CVWG 130
           R       R  +     KI +++G C   GGI                +  +        
Sbjct: 73  RQDE--VERLLKIRQQAKILVAFGTCACFGGINSLKNRFPAREMIDAVYPGMPIETLPVR 130

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
               +V VD+ IPGCP             +   +  +         +
Sbjct: 131 KISDVVKVDLSIPGCPVDKREVERIVVSLVRGSQITLPKYPVCVECK 177


>UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH RepID=B9L9V0_NAUPA
          Length = 306

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 67/226 (29%), Gaps = 42/226 (18%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFD-AERF-GIKVVPSPRHAD-------------- 80
              +  +    C+GC +       P+ +   RF  I   P+   +D              
Sbjct: 37  RPDIIWLQALSCDGCSVNFLNAEIPVTEILNRFANIVFHPTIMASDGKEAMDILMNYKSD 96

Query: 81  --ILLFTGAVTRAMRSPALR--------AWQSAPDPKICISYGACGNSGGI--FHDLYCV 128
             IL+  GA+  AM    +           + A + K  ++ G C    GI    ++Y  
Sbjct: 97  NMILVVEGAIPTAMPHACMMGEMFVNDIILKKAKEAKAIVAAGTCATFAGICDMKNMYTK 156

Query: 129 WGGTDKIVP------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
            G     +         V +P CP  P   LY     +   +            +  +  
Sbjct: 157 AGSVKYFLETNNINTPVVNLPTCPMKPKHLLYTLFYYI-KHKSLPPLDMSHRPIKFFSNT 215

Query: 183 LHGDMVQPLRVKVDREARR-------LAGYRYGRQIADDYLTQLGQ 221
           +H   +     + +  A++             G    +D +   G+
Sbjct: 216 IHERCIYYNDYQQNIFAKKIGDRGCLFKLGCQGPVTKNDCVKSTGE 261


>UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicobacter
           RepID=Q7VJP5_HELHP
          Length = 552

 Score = 93.6 bits (231), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 62/230 (26%), Gaps = 46/230 (20%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSPLFD--------AERFGIKVVPSPRHAD---------- 80
            +  +    C GC         P  +         E     +      A           
Sbjct: 61  RLVWLHLAECTGCSSSFLRLDKPDIESVLLEYITLEYHETIMGAVGFSAKKSLHNTLDKE 120

Query: 81  -ILLFTGAVTR-AMRSPA----------LRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
            IL+  G V+                      + A   +   + G C + GG+       
Sbjct: 121 FILVIEGGVSLGNHAHFLTSGADSITGEEECKEVAQKAQAIFAVGTCSSFGGVQAAYPNP 180

Query: 129 WG--GTDKIVPVD-VYIPGCPPTPAATLYGFAMALGLLEQKI----------HARGPGEL 175
               G D  +    + IPGCPP+ A  +      + L E             + +   ++
Sbjct: 181 TQSIGIDSFLSQRIINIPGCPPSEANIIGSILYYILLQELPPTDSLHRPIWSYGKNLHDM 240

Query: 176 DEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQ 225
            E+ A+   GD VQ        +      Y+ G +    +     + +  
Sbjct: 241 CERKAKFESGDFVQSFDDPHLEDG--YCLYKVGCKGPYVF-NNCPKVKFN 287


>UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes RepID=A5I2W4_CLOBH
          Length = 290

 Score = 93.2 bits (230), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 63/229 (27%), Gaps = 43/229 (18%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSP---LFDAERFGIKVVPSPRHAD------------ 80
           +      ++  GC+G  I +    +P           +    S   A+            
Sbjct: 33  KKVNAIWLEVTGCSGNIISLLNAENPGLIYILRNIVNLTFNNSLMGAEGEFAYEQFLNTL 92

Query: 81  ----ILLFTGAVTRAMRS--------------PALRAWQSAPDPKICISYGACGNSGGI- 121
               ILL  GAV+                          +    K  ++ G C + GGI 
Sbjct: 93  DTEFILLVDGAVSTKENGYYNIIANYRGRPVTALEAIKMAGEKAKYVVTVGTCSSYGGIS 152

Query: 122 -FHDLYCVWGGTDKIV-PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
                       D ++    + +PGCP  P   +   A  +   + ++  +  G      
Sbjct: 153 AAKPNPSGSKSVDAVINKEVIKLPGCPCHPDWVVGTLAHLVTYGKPELDNK--GRPILFY 210

Query: 180 AEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVAR 228
              +H    +          +R+   ++G +     L   G   +    
Sbjct: 211 GITIHDSCTRRGFFD-----KRIFAKKFGEEGCMFKLGCRGPVTKTDCP 254


>UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Candidatus Korarchaeum cryptofilum OPF8
           RepID=B1L5Y5_KORCO
          Length = 319

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 65/267 (24%), Gaps = 71/267 (26%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPSPRH-------------ADIL 82
            A +    C  C GCE         LFD  E   I + P                  D+ 
Sbjct: 3   KAKIAFYWCASCGGCEEAQVDLADKLFDLIEAADIVLWPVAMDFKKEDVEKVGDGSIDVA 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLY 126
           +  G +  +     ++        K+ I+YG+C + GGI                + +  
Sbjct: 63  IINGGIRTSEHEEMVKLL--RRKSKLVIAYGSCAHMGGIPALANAYTRESILKYVYEEAP 120

Query: 127 CVWG---------------------------GTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
            V                               D ++ VD YIPGCPPTP  T    +  
Sbjct: 121 TVTNPEGKRPKTRVSVDGMDFELPEFLEYLDPLDAVIDVDYYIPGCPPTPEITWEAVSSI 180

Query: 160 LGLLEQKI-----HARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGY------RYG 208
           L              R                 +  ++     E      Y        G
Sbjct: 181 LSGNLPPKGHVFGSDRALCYECPLNETKPEKVTIDTIKRVHQTELDPNKCYLTQGVLCMG 240

Query: 209 RQIADDYLTQLGQGEE-QVARWLEAEN 234
                       +G       +   + 
Sbjct: 241 PVTRGGCKALCIKGNMPCTGCFGPVDG 267


>UniRef50_C1GND6 NADH-ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Paracoccidioides brasiliensis Pb01
           RepID=C1GND6_PARBA
          Length = 159

 Score = 92.5 bits (228), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           +S L   R+A  I   +++ E        ++   +    ++ +  G    C +E+ A   
Sbjct: 16  VSTLGVIREAERISSLISLQEEKNGSIDKVVNWAREG-SLWPLSFG-LACCNMEMMAVSM 73

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS 102
           P +D +R G     SPR +D+++   AVT+            
Sbjct: 74  PRYDQDRLGTIFRASPRQSDVIIVADAVTKQDGPRLAVTRGQ 115


>UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella tarda EIB202
           RepID=D0ZEI9_EDWTE
          Length = 471

 Score = 92.5 bits (228), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 61/242 (25%), Gaps = 47/242 (19%)

Query: 26  MKASLLKKIKRSAYVYRVDCGG--CNGCEIEIFATLSPL--------FDAERFGIKVVPS 75
           M   +   ++    +  V   G  C  C      +  PL           +     +  +
Sbjct: 136 MAPKIAWALENKPRIPVVWIHGLECTCCTESFIRSSHPLAKDVILSLISLDYDDTLMAAA 195

Query: 76  PRHAD--------------ILLFTGAVTRAM---------RSPALRAWQSAPDPKICISY 112
              A+              IL   G               R    +  ++A      I++
Sbjct: 196 GTQAEAVFDDIITRYHGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKKAAAGASAIIAW 255

Query: 113 GACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           G C + G +             DK++     + +PGCPP P   +      +   ++   
Sbjct: 256 GTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPD-VMSAIITYMVTFDRLPD 314

Query: 169 ARGPGELDEQPAEILHGDMVQPLRV---------KVDREARRLAGYRYGRQIADDYLTQL 219
               G       + +H    +               D   +    Y+ G +    Y    
Sbjct: 315 VDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS 374

Query: 220 GQ 221
             
Sbjct: 375 ST 376


>UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Bacteria
           RepID=B2UPQ9_AKKM8
          Length = 398

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 67/256 (26%), Gaps = 47/256 (18%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGC--------EIEI 55
           ++       +   ++  + IA   A+L     +   V  +    C GC          EI
Sbjct: 44  MISLMGVATVTGGISNAQEIADKMAAL-----KRPVVIWLQLQECTGCLESTIRSYNEEI 98

Query: 56  FATLSPLFDAERFGIKVVPSP-----------RHADILLFTGAVTRAMRSPA-------- 96
              +          + + PS            R   IL+  G+V                
Sbjct: 99  GDMVLSAVSMPYVELLMAPSGEAANQALEDAIREPHILVINGSVPVNDGGVYCTVAGDTV 158

Query: 97  -LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAA 151
                  A +    ++ G+C   G I        G  G   I+     + +PGCPP    
Sbjct: 159 ENMLRHCAENASHILAVGSCAYFGSIQAARPNPTGAVGIRDILTDRTVINVPGCPPIGDV 218

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK--------VDREARR-L 202
                   L   ++                 +H +  +              D  AR   
Sbjct: 219 ITAVIMYILT-FDRAPECDLESRPLMAYGTRIHNNCPRRAHFDAGQFVNVFDDENARECF 277

Query: 203 AGYRYGRQIADDYLTQ 218
             Y+ G +  D +   
Sbjct: 278 CLYKVGCKGPDTFSPC 293


>UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Allochromatium vinosum DSM 180 RepID=C5S9B0_CHRVI
          Length = 251

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 49/170 (28%), Gaps = 31/170 (18%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP------LFDAERFGIKVVPSPRHADILLFTGAVTR 90
              V   +   C GC++ +  TL        + +  +F   +        I    G+ TR
Sbjct: 2   KPKVAFFEFTSCEGCQLTVLDTLQRHPELLEVIEIVQFREAMSERGEDYQIAFIEGSCTR 61

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGI----------------------FHDLYCV 128
                  +  +     +I ++ GAC + GGI                      + + Y  
Sbjct: 62  PSDEA--KIREIREQAQIVVALGACAHLGGINAIRNRMPLEQTREYVYGDKKDWFETY-P 118

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
                 ++ VD  IPGCP             L   +  I         + 
Sbjct: 119 ARPLSAVIEVDAVIPGCPIDRKEFATAVTHLLQGRKPAIPDYPLCIDCKL 168


>UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Thermosinus
           carboxydivorans Nor1 RepID=A1HLY8_9FIRM
          Length = 325

 Score = 91.3 bits (225), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 67/243 (27%), Gaps = 46/243 (18%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSP-----LFDAERFGIK-----VVPSPRHADI------ 81
             V  +  G C+GC + +  +++P     L D                P  A +      
Sbjct: 42  PPVVWLQGGSCSGCSVSLLNSVAPDIGKVLTDIISLKFHQTLMAAAGEPAMAVLDEVRAR 101

Query: 82  ------LLFTGAVTR--------------AMRSPALRAWQSAPDPKICISYGACGNSGGI 121
                 L+  GAV                     A R  Q A   K  ++ G C   GGI
Sbjct: 102 YAGQYYLVVEGAVPVAAGRHTATLGEHNGQPVPFADRVRQMAAKAKAVMAVGTCAAYGGI 161

Query: 122 FHD--LYCVWGGTDKIVP--VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
                          +V     V +PGCP  P   L      +     ++          
Sbjct: 162 PAAGVNPTASKAVSAVVRGTPLVNVPGCPIHPDWVLGTLLHLIRYGMPEL--DKLQRPLM 219

Query: 178 QPAEILHGDMVQPLRVKVDREARRL----AGYRYGRQIADDYLTQLGQGEEQVARWLEAE 233
              + +H    +       R A++L      Y+ G +    +     +     A W    
Sbjct: 220 FFGKSIHDICERRPDFDQGRFAKKLSEPGCLYKLGCKGPMAFGDCAERKFNNGANWCVGA 279

Query: 234 NDP 236
           N P
Sbjct: 280 NSP 282


>UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 Tax=Bacteria
           RepID=HOXY_RALEH
          Length = 209

 Score = 90.5 bits (223), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 45/185 (24%), Gaps = 45/185 (24%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS------ 75
               M  +L    +    V  +   GC GC +        L         +  S      
Sbjct: 15  PATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLPLLEKVTLLRSSLTDIKR 74

Query: 76  -PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------F 122
            P    I    G V+               +  I IS GAC   GG+             
Sbjct: 75  IPERCAIGFVEGGVSS--EENIETLEHFRENCDILISVGACAVWGGVPAMRNVFELKDCL 132

Query: 123 HDLY------------------------CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
            + Y                               ++V +D +IPGCPP   A       
Sbjct: 133 AEAYVNSATAVPGAKAVVPFHPDIPRITTKVYPCHEVVKMDYFIPGCPPDGDAIFKVLDD 192

Query: 159 ALGLL 163
            +   
Sbjct: 193 LVNGR 197


>UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltaproteobacteria
           RepID=Q1NM22_9DELT
          Length = 343

 Score = 90.5 bits (223), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 66/267 (24%), Gaps = 58/267 (21%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLS-PLFD-AERFG-IKVVPSPRHAD------------- 80
              +  +    C+GC + +  T    + D   RF  +   P+   A              
Sbjct: 55  RPNLVWLQGASCSGCSLSLLNTEEITVLDLLTRFSRLLYHPTLAQATGNQVTDLLTKLTT 114

Query: 81  -----ILLFTGAVTRAMRSPA--------LRAWQSAPDPKICISYGACGNSGGI--FHDL 125
                +L+  G +   M                + A     C++ G C   GG+      
Sbjct: 115 GVEPYLLVLEGGIPAGMPHACLLAHRPFEEWVSRLAQGADACVAVGTCAAFGGVAAMPGT 174

Query: 126 YCVWGGTDKIVPVD------VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
                  D+ +         V +P CP  P   +Y      G   +     G G      
Sbjct: 175 LTGVVSLDRHLATRDIAVPLVNLPSCPMKPEHLVYTLLHY-GRHRRLPELDGRGRPRRFF 233

Query: 180 AEILHGDMVQ-------PLRVKVDREARRLAGYRYGRQIADDYLT---------QLGQGE 223
           A  +H    +            +  +   L     G    +D             L  G 
Sbjct: 234 ANTVHQRCPRYAAFQELDFARHIGEDGCLLELGCQGPVSNNDCPDLGYNGNLNYCLKAGH 293

Query: 224 EQVARWLEAENDPRLNEIVSHLNHVVE 250
                  E    P    ++ HL     
Sbjct: 294 PCTGCAGELFPRP----VLYHLYDDPR 316


>UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI
          Length = 180

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 46/169 (27%), Gaps = 40/169 (23%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVP------SPRHADILLFTGAVT 89
              V      GC+GC +        L +  E   I   P       P   D+ +  G+++
Sbjct: 6   KITVATAWLDGCSGCHMSFLDLDERLIELVEHVEIVYSPLVDTKELPARVDVGILEGSIS 65

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIF--------------------------- 122
                   +A          +S G C  +G +                            
Sbjct: 66  SEDD--LEKARLFRERCTRLVSLGDCAVTGNVPAMRNHFKLADVFDRAYRENVTLQPQIP 123

Query: 123 ----HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                 L          V VDV++PGCPP+  A  +  +  +       
Sbjct: 124 TRRVPALLTPVKPVHGEVKVDVFVPGCPPSADAIWHVLSELIAGRMPDP 172


>UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n=12 Tax=Bacteria
           RepID=MBHS_WOLSU
          Length = 354

 Score = 89.8 bits (221), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 70/271 (25%), Gaps = 47/271 (17%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD----- 64
           A  +   +++  +   + A   +   R   V  +    C GC   +  T  P  D     
Sbjct: 16  AGAMTAMLSLPATFTPLTAKAAELADR-LPVIWLHMAECTGCSESLLRTDGPGIDSLIFD 74

Query: 65  ---AERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSP-----------A 96
               E     +  +   A+              +L+  G +                  A
Sbjct: 75  YISLEYHETVMAAAGWQAEHNLEHAIEKYKGRYVLMVEGGIPAGSSEFYLTVGPHGTTGA 134

Query: 97  LRAWQSAPDPKICISYGACGNSGGIF--HDLYCVWGGTDKIV-PVDVYIPGCPPTPAATL 153
             A  ++ +     + G+C + GG+              K+     + +PGCPP+    +
Sbjct: 135 EHARHASANAAAIFAIGSCSSFGGVQAARPNPTNAQPLSKVTNKPVINVPGCPPSEKNIV 194

Query: 154 YGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV--------DREARR-LAG 204
                 + L                    +H    +  R           D  A++    
Sbjct: 195 GNVLHFI-LFGTLPSVDAFNRPMWAYGLRIHDLCERRGRFDAGEFVQEFGDEGAKKGYCL 253

Query: 205 YRYGRQIADDYLTQLGQGEEQVARWLEAEND 235
           Y+ G +    +         Q   W      
Sbjct: 254 YKVGCKGPYTFNNCSKLRFNQHTSWPVQAGH 284


>UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=delta
           proteobacterium MLMS-1 RepID=Q1NJF2_9DELT
          Length = 366

 Score = 89.8 bits (221), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 56/228 (24%), Gaps = 65/228 (28%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERF---------------GIKVVPSPRHADI 81
              +       C GCEI +      + + +                  I+ +     A +
Sbjct: 4   KPKLAIYWAAACGGCEIAVVNLHEKILELDAAFELFFCPCLLDTKKGDIEALADGEIA-V 62

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-------------------- 121
            LF GA+  +      +        +  I++G+C   G I                    
Sbjct: 63  TLFNGAIRTSENEEMAQLL--RRKSQTLIAFGSCAVEGCIPGLANLYDRTAIFNTVYLDN 120

Query: 122 -----------------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
                                    + Y        +V VD +IPGCPP P         
Sbjct: 121 PSLDNPAGILPQTRSQVPEGELRLPEFYDRVQTLADVVAVDFFIPGCPPEPPRIWQAVES 180

Query: 159 ALGLLEQKIH----ARGPGELDEQPAEILHGDMVQPLRVKVDREARRL 202
            L            A       E P +I    + +  R        R+
Sbjct: 181 LLNGDPPPPDQVLGAGKLAVCHECPRKIEEKKIKRFYRNHQMISDHRV 228


>UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax=Helicobacter cinaedi CCUG
           18818 RepID=UPI000197A0EB
          Length = 554

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 58/211 (27%), Gaps = 38/211 (18%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSPLFD--------AERFGIKVVP---SPRHA--D----- 80
            +  +    C GC         P  +         E     +     + +    D     
Sbjct: 61  RLVWLHMAECTGCSESFLRLDKPGVESLLLEYISLEYHETIMGAVGFNAKQCLHDTLKEE 120

Query: 81  -ILLFTGAVTRAMRSPAL-----------RAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
            IL+  G V+    +  L              + A   +   + G C + GG+       
Sbjct: 121 FILVIEGGVSLGENAYFLTSGADSTNGENECLEVARHAQAIFAIGTCSSFGGVQAAYPNP 180

Query: 129 W--GGTDKIVP-VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHG 185
               G    +    V IPGCPP+ A  +      + LL++               + LH 
Sbjct: 181 TQSQGISTFLRQPIVNIPGCPPSEANMIGSLMYYI-LLQEIPPCDSLNRPLWSYGKNLHE 239

Query: 186 DMVQPLRVKVDREARRLAGYRYGRQIADDYL 216
              +  +     E+          ++ D Y 
Sbjct: 240 MCERKAKF----ESGDFVESFDDERLQDGYC 266


>UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YFX1_THEYD
          Length = 318

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 69/260 (26%), Gaps = 67/260 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAE-RFGIKVV-------------PSPRHA-DI 81
              +     GGC GC+I +      L D      I                  P  + D+
Sbjct: 3   KPKLAYYLAGGCGGCDIAVVDISEMLVDVALAVDIVFWAPTVADVKYKDLEAMPDGSIDV 62

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDL 125
            LFTG V  +      +        K+ I++G C   GGI                + + 
Sbjct: 63  GLFTGNVRNSEHEHIAKVL--RNKCKVLIAFGICAACGGIKGLVNLHTTDELLDKAYVNT 120

Query: 126 YCV---------------------------WGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
           +                                 D++V VD YI GCPP        F  
Sbjct: 121 FSTDNPNKELPQTTCVVDGKYELTLPTLMYARPLDEVVKVDYYIGGCPPHYEHVKAAFTA 180

Query: 159 ALGLLEQKI-----HARGPGELDEQPA--EILHGDMVQPLRVKVDREARRLAGYRYGRQI 211
            L              +   E+ ++    +     +   ++  +D              +
Sbjct: 181 LLSGQLPPPGSWITMGKAVCEVCDRNPVLKGKPKKLATEVKRTIDGAPSEDGCLLEEGYL 240

Query: 212 ADDYLTQLGQGEEQVARWLE 231
               +TQ   G +  A  + 
Sbjct: 241 CLGPVTQGDCGAKCPAANIP 260


>UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax=Desulfitobacterium
           RepID=Q24X54_DESHY
          Length = 362

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 72/273 (26%), Gaps = 45/273 (16%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD--- 64
           +        + + E +A   A  ++       V  +    C GC   + ATL+P  +   
Sbjct: 19  KLMAATTAALGLPEVLAPQAAKAVEAAMEKPPVIWLHGMECTGCSESLLATLNPSIESLV 78

Query: 65  -----AERFGIKVVPSPRHAD-----------ILLFTGAVTRAMR----------SPALR 98
                       +  S   A+           +L+  G+V  +                 
Sbjct: 79  LDTLSIRYHETIMAASGHVAEQAYQDTLDEKFVLVVEGSVPASEATDSYCMVGGKPFRET 138

Query: 99  AWQSAPDPKICISYGACGNSG-GIFHDLYCVWGGTDKIVP------VDVYIPGCPPTPAA 151
             ++A   +  I+ G+C   G GI         G  +++         + +P CP  P  
Sbjct: 139 VLEAAAKAQAVIAVGSCATDGAGIPGACEIKPIGVRELLQKHNIATPVINLPCCPVKPNT 198

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK--------VDREARRLA 203
            +      L                    ++LH +  +  + +         D   +   
Sbjct: 199 LIGTIVYYLT-FSAVPELDEQARPLIYYGKLLHDNCPRRGQFEAGNFLSDWNDPAQKDYC 257

Query: 204 GYRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
               G +    Y           A +      P
Sbjct: 258 LLLKGCKGPKTYTDCAQVWWNDNANFCINAGSP 290


>UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NU23_HALUD
          Length = 191

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 48/175 (27%), Gaps = 45/175 (25%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS--------PRHADILLFTGAVTRA 91
           V  V  GGC+GC +E       L D     + +V S           AD+ +  G VT  
Sbjct: 17  VATVCLGGCSGCHMEFLNVDHGLVDLVE-EVDIVASHMIVDEKGVPEADVGIAEGVVTNE 75

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGG----------------------------IFH 123
                        +    +++G C    G                             F 
Sbjct: 76  ENVEVAEEL--RENCDTVVAWGDCAALRGIMSLRNYQDRDEMLEETFMGEADDESEVPFG 133

Query: 124 DLYCV------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           D   V          D+ + VDVY+PGCPP                  +I     
Sbjct: 134 DDEGVPKLLEDARPLDEYIDVDVYVPGCPPDAEVMKESLEALARGETPEIEGDKL 188


>UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacteria RepID=MBHT_ECO57
          Length = 372

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 72/275 (26%), Gaps = 49/275 (17%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD--- 64
           +    +   M +    A+  A  +   +R   ++ +    C GC   +     P  +   
Sbjct: 20  KLCAALAATMGLSSKAAAEMAESVTNPQRPPVIW-IGAQECTGCTESLLRATHPTVENLV 78

Query: 65  -----AERFGIKVVPSPRHAD--------------ILLFTGAVTRAM---------RSPA 96
                 E   +         +              +L+  G++                 
Sbjct: 79  LETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIV 138

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD--KIVP--VDVYIPGCPPTPAAT 152
               ++A      I+ G+C   GG+        G     +++P    + IPGCPP P   
Sbjct: 139 DHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNF 198

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARR---------LA 203
           L   A  +   +                 ++H    +       R A+            
Sbjct: 199 LATVAHIITYGKP-PKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWC 257

Query: 204 GYRYGRQIADDYLTQLGQGEEQVAR--WLEAENDP 236
            Y  G +  + Y       +       W  A   P
Sbjct: 258 LYHLGCKGPETY-GNCSTLQFCDVGGVWPVAIGHP 291


>UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Archaeoglobaceae
           RepID=D2RD73_ARCPR
          Length = 352

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 55/226 (24%), Gaps = 60/226 (26%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA--------------- 65
             +      +        ++  ++   C GC I    +  P  D                
Sbjct: 26  ADLVKALEDVKDYW----HICWLNGAACTGCTISFAQSADP--DLVQILTEILVGNSGLP 79

Query: 66  ----ERFGIKVVPSP-------------RHADILLFTGAV------TRAMRSPALRAWQS 102
               +      V S              + A IL+  GAV      T   +       ++
Sbjct: 80  IALPDYMETIHVASGTLAEELKERWRQSKRAKILIVEGAVQDEGFCTIHGKDFREHLKEA 139

Query: 103 APDPKICISYGACGNSGGIFH-------DLYCVWGGTDKIV------PVDVYIPGCPPTP 149
           A      I+ G C   GGI                G    +         + IP CP  P
Sbjct: 140 AEVADYIIAVGQCATYGGIPGAKPWDGEPNPTGAKGVQDFLYEVGINKTVINIPCCPAHP 199

Query: 150 AATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD-MVQPLRVK 194
              +   A  +  +  ++     G       + +H +         
Sbjct: 200 DHIIVTLASLMLGVVPEL--DKYGRPKVFFGKNMHNELCPYRPYYD 243


>UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylobacterales
           RepID=Q30QL6_SULDN
          Length = 293

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 57/198 (28%), Gaps = 31/198 (15%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFA-------------TLSPLFDAERFGIKVVPSPRHAD 80
           +++   +  +    CNG                       P+ D++    ++V +    +
Sbjct: 1   MEKKMRILWLSAITCNGNTHSFLNYPHMEQFLDDFEFIYHPVIDSKYSLQEIVSNEIECE 60

Query: 81  ILLFTGAVTRAMR----SPALRAWQSAPDPKICISYGACGNSGGIFHDL-YCVWGGTD-- 133
           +L+  GA++   +             +   +  ++ G C   GGIF +  Y    G    
Sbjct: 61  VLIIEGAISEEFQRGGVPIFEIIKNYSKRVQKILTVGTCATFGGIFRESDYKDTAGMHFD 120

Query: 134 ---------KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
                      +   + I GCP  P   +         +   +         E  A  +H
Sbjct: 121 QDRALHNFSDFLDKTISISGCPIHPEVLVNTLYAIKKSV--LLRVDNFLRPKEFYAYTVH 178

Query: 185 GDMVQPLRVKVDREARRL 202
               +    +   +  + 
Sbjct: 179 NGCTRNEYFEYKVDNHKF 196


>UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Spirosoma
           linguale DSM 74 RepID=D2QHS8_9SPHI
          Length = 326

 Score = 87.4 bits (215), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 48/200 (24%), Gaps = 52/200 (26%)

Query: 40  VYRVDCGGCNGCEIEIFATLSP-LFDAE-RFGIKVVPSPR-------------------- 77
           V  +  G C+G  +       P + D    FG+ ++  P                     
Sbjct: 4   VLWLQGGACSGNTMSFLNAEEPTVVDLVTDFGVNILWHPSIGLEIGDQVTHLLNDIVSGR 63

Query: 78  -HADILLFTGAV--------TRA---MRSPALRAWQSAPDPKICISYGACGNSGGIFHDL 125
              DIL++ G++        T      R         +      ++ G C   GGI    
Sbjct: 64  TQCDILVYEGSIIQGPNGTGTMNYFADRPMQDWVRDLSKVVGYVVAIGDCATWGGIPAVA 123

Query: 126 YCVWG---------------GTDKIVP---VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                               G+D +       + IPGCP  P                 +
Sbjct: 124 PNPSESTGMQFLKKAKGGFLGSDYVSKGGLPVINIPGCPAHPDWITQILVAIATGRIGDV 183

Query: 168 HARGPGELDEQPAEILHGDM 187
                        + +    
Sbjct: 184 LIDEYHRPKTFFTDFVQTGC 203


>UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Tax=Thermococcaceae
           RepID=B6YU80_THEON
          Length = 265

 Score = 87.1 bits (214), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 44/175 (25%), Gaps = 30/175 (17%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV-------PSPRHADILLFTG 86
           ++    +       C GC++        L       I                DI    G
Sbjct: 1   MEGKVRIGFYALTSCYGCQLRFAMMDEILQLLPNAEIVCWYMLDRDSSEDEPVDIAFIEG 60

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDL----- 125
           +V+           +   + KI ++ GAC   GG+                + D      
Sbjct: 61  SVST--EEEVELVKKIRENAKIVVAVGACATQGGVQSWEKDKSLEELWKAVYGDGKVKFE 118

Query: 126 YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
             +    +  + VD  I GCPP     +Y     L     +              
Sbjct: 119 PKMAEPLENYIKVDYRIYGCPPEKKDFIYAIGTFLVGSWPEDIDYPVCLECRLKG 173


>UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Clostridium
           RepID=B8HZS9_CLOCE
          Length = 299

 Score = 87.1 bits (214), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 71/264 (26%), Gaps = 42/264 (15%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF--------D 64
                T  E    +K  + +       +  ++  GC+G  I +    +P F        +
Sbjct: 11  AARLKTARELFDRVKDKISEGTLMRRNLVWLELTGCSGNIISLLDGANPDFKYLISQMTN 70

Query: 65  AERFGIKVVPSPRHA---------D--ILLFTGAVTRAMRS--------------PALRA 99
                  V      A         D  IL   GAV                         
Sbjct: 71  FLYDNSLVAAEGEKAMEKLMGSIGDEYILAVEGAVATKNNGMYNVIGRWQGKPVTALNAI 130

Query: 100 WQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDKIV-PVDVYIPGCPPTPAATLYGF 156
                     I+ GAC + GG+               I+    + +PGCP  P   +   
Sbjct: 131 KLLGEKASYVIALGACASHGGVSAAKPNPSDCVSVQSILNRKVIKLPGCPCHPDWFMGTL 190

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL----AGYRYGRQIA 212
           A  L   E ++            + ++H    +         A++L      ++ G +  
Sbjct: 191 AHILLYGEPEL--DNRDRPVLFYSTLIHDRCPRRSFFDKGIFAKKLGESTCMFKLGCRGP 248

Query: 213 DDYLTQLGQGEEQVARWLEAENDP 236
              +    +   Q   W   ++ P
Sbjct: 249 VTRIDCPIRKWNQYVNWPVEDDTP 272


>UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=10
           Tax=Proteobacteria RepID=B5EQ53_ACIF5
          Length = 265

 Score = 86.3 bits (212), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 43/171 (25%), Gaps = 30/171 (17%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERF-------GIKVVPSPRHADILLFTGAVT 89
              +       C+GC++        L                 V      DI    G+V+
Sbjct: 5   KPRLAVHKFSSCDGCQLAFLNLGEDLLRLAELVEIVHFAEAGPVDPDAVVDIAFVEGSVS 64

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFH---------------------DLYCV 128
                   R  +   + +  IS GAC  +GG+                            
Sbjct: 65  TPEDE--ERIQKIRKNSRHLISIGACATAGGLQALRNLADGPGWIAEIYAQPEHIHSLAT 122

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
                  VPVD+ + GCP      L      L  +   +         ++ 
Sbjct: 123 STPIAAHVPVDLELWGCPVNGRQVLGAVRALLFEVVPALEKDKVCLECKRH 173


>UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=Bacteria
           RepID=A7NNQ8_ROSCS
          Length = 417

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 75/298 (25%), Gaps = 58/298 (19%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL---- 62
              +  + +P T    IA               V  ++   C G         SP     
Sbjct: 27  AAMSAALALPSTFTPRIARAL-----NTAERLPVVWLEFQDCAGNTESFLRAESPGVADI 81

Query: 63  ----FDAERFGIKVVPSPRHAD--------------ILLFTGAV---------TRAMRSP 95
                  E     + P+   A+              I +  G++         T   R+ 
Sbjct: 82  VLEQISLEYHETIMAPAGHRAEHSLDAVVENYPGQYIAIVEGSIPIANGGVYCTIGGRTA 141

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPV---DVYIPGCPPTPA 150
              A +   +    I+ GAC   GG         G  G  + VP     + +PGCP    
Sbjct: 142 LSIAERVCSNALATIAVGACAWDGGWPAASPNPTGAVGVRQAVPGLKNLINLPGCPMNVI 201

Query: 151 ATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR-------EARR-- 201
                    L   +Q       G       +++H +  +       R       E  R  
Sbjct: 202 NLTAVIVHYLT-FKQLPATDEQGRPFFAYGQLIHNNCERRGHFDSGRFVERWGDEGHRLG 260

Query: 202 LAGYRYGRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHVVEEA 252
              Y+ G +           G    + W             PR  + +S     +   
Sbjct: 261 WCLYKMGCKGPQTLSNCPAVGWNGTSYWPIGAGHGCVGCMSPRFWDTMSPFYERLPNV 318


>UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Veillonellaceae
           RepID=D1BNB1_VEIPT
          Length = 379

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 61/253 (24%), Gaps = 50/253 (19%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-------- 61
              + +P T+ ++      +          V  +    C GC      + SP        
Sbjct: 30  TAILGLPPTMLDTFVKAAETTEL-----PTVIWLHGHECTGCSESFIRSSSPFTSDVILN 84

Query: 62  LFDAERFGIKVVPS--PRHAD------------ILLFTGAVTRAM---------RSPALR 98
           +   E        S  P                IL   G V             R+    
Sbjct: 85  MISLEYDDTLAAASGAPLEEHLEKIIKEKAGKYILAVEGGVPLDEDGVYCTVGGRTFKES 144

Query: 99  AWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV----PVDVYIPGCPPTPAATLY 154
             ++A      I YG+C + GGI                      + +PGCPP P     
Sbjct: 145 LLEAAKGAAAIIEYGSCASWGGIQAAKPNPTNTVSVSSVVSGKPIIKVPGCPPIPEVMTG 204

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQP---------LRVKVDREARRLAGY 205
                  L  Q       G   +     +H    +           +   D        Y
Sbjct: 205 VIMHY-ALFGQIPPLDSQGRPKQFYGNRIHDTCYRRAFFDSGLFVEKFDDDASKSGWCLY 263

Query: 206 RYGRQIADDYLTQ 218
           + G +    Y + 
Sbjct: 264 KVGCRGPQTYNSC 276


>UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Candidatus Korarchaeum cryptofilum OPF8
           RepID=B1L3Q1_KORCO
          Length = 258

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 69/251 (27%), Gaps = 37/251 (14%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERF-GIKVV--PSPRHAD----ILLFTGAVT 89
                     GC G  + I      L D      I      S +  D    I    G+V+
Sbjct: 3   KLRAAFYSLTGCQGEYLTILGMEDILLDLLSLVDIAEFKLASSKEYDGKVDIAFVEGSVS 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------HDLYCVWG 130
                      +   + KI ++ G C   GGI                     +LY   G
Sbjct: 63  T--ERDLEYIKRIRGNSKILVALGDCAVWGGIQASTSGQDPKELMRSVYKTEKNLYGFLG 120

Query: 131 ---GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM 187
              G  ++VPVD  I GCP             +  ++ ++         +   EI    +
Sbjct: 121 EHKGISEVVPVDYEIQGCPIEGKEFARVLIDLVRDVKPELPDYPVCIECKVR-EIPCLIV 179

Query: 188 VQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEA-----ENDPRLNEIV 242
            + L                    A        + E  VA  LE       +  R+ +++
Sbjct: 180 ERGLPCLGPITVAGCDARCPSYNTACIGCRGPIRDEANVAGELEMLLRKGYDRERILDLM 239

Query: 243 SHLNHVVEEAR 253
           S      +  R
Sbjct: 240 SLFGARYKGLR 250


>UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ferroglobus
           placidus DSM 10642 RepID=C8S807_FERPL
          Length = 299

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 64/254 (25%), Gaps = 69/254 (27%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA-----------DILLF 84
           +   +      GC+GC +  F        +ERF +   P   ++           D+   
Sbjct: 2   KKIRLAFYTASGCSGCILSFFDLEEFFLSSERFSVVWAPMFTNSKLEDLEKIERIDLTFI 61

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL------------------- 125
            G++  +     ++        +  ++ G C   GG+                       
Sbjct: 62  EGSIRLSEHEEIVKIL--REKSEKVVALGTCAVFGGVPGLSNFYSDEEILSDVFDSDENA 119

Query: 126 ----------YCVWGG--------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                     Y +            ++++ VD ++PGCPP+    L              
Sbjct: 120 PKPRTLLDGKYELTLPEFKDEMKRVEEVIEVDHFVPGCPPSKNQLLKII----------- 168

Query: 168 HARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
                 E        +     + +        +R      GR         L QG     
Sbjct: 169 -DFDFEERWIVEKTSVCSVCPRKVEEIKVSAVKRAFEKDDGR-------CFLLQGILCFG 220

Query: 228 RWLEAENDPRLNEI 241
                  +    ++
Sbjct: 221 PLTPGNCEAACIKV 234


>UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfurivibrio
           alkaliphilus AHT2 RepID=C8R2V0_9DELT
          Length = 305

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 58/234 (24%), Gaps = 52/234 (22%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSP-----LFDAERFGIKV---VPSPRHA---------- 79
             +  +    C GC I +    SP     + D  +          S   A          
Sbjct: 40  PKLLYLQGLSCTGCSISLLQADSPSPLSMITDYSQLVFHTDLSATSGAQAMELINSFIDG 99

Query: 80  ---D-ILLFTGAVTRAMRSP-----------ALRAWQSAPDPKICISYGACGNSGGIFHD 124
              D +L   GA+   M                RA ++       ++ G+C   GGI   
Sbjct: 100 QAGDYVLAIEGAIPAGMPEACIIDHKPFADYLERAARTMSGA---VAIGSCACDGGIPAA 156

Query: 125 LYCVWGGTD--------KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
                G            I    + I GCP  P    +     + +    +    P    
Sbjct: 157 EGNPTGAVGLAEFYRNRNINQPVINIRGCPVHPDWVWHTITHLVLVGNPNLVNGSPRVFF 216

Query: 177 EQPAEILHGDMVQPLRVKVDREA-RRLAGYRYGRQIADDYLTQLGQGEEQVARW 229
           E+    L              +   R   +R G      +        +   RW
Sbjct: 217 ERRLHELCPRYYDFQEEIFAEKLGDRGCLFRLGCLGPITF-------ADCPTRW 263


>UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Epsilonproteobacteria
           RepID=A6QAV6_SULNB
          Length = 298

 Score = 84.4 bits (207), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 52/198 (26%), Gaps = 36/198 (18%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA-------------DI 81
           +    +  +    CNG                 F +   P    A             D+
Sbjct: 4   RNKPKLLWLQSITCNGNTHSFLNHPELFSILSHFELVHHPVLESAYTLENVIKGEVPCDL 63

Query: 82  LLFTGAVTRAMRSPALR-------AWQSAPDPKICISYGACGNSGGIFHDLYC------V 128
           L+  GA                    + A   K  IS G C   GGIF +          
Sbjct: 64  LIVEGA--FKEEGFLKSGVEVSSVLKKYADKAKYIISAGTCATFGGIFKENDPEEISGFC 121

Query: 129 WGGTDKIVPVDVY------IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           + G +K    + Y      +PGCP  P    Y   M       K+         E     
Sbjct: 122 FDGEEKTPRYESYASKLISLPGCPIHPRWLSYLLLMIASG--NKVPLDTLHRPVELYGYT 179

Query: 183 LHGDMVQPLRVKVDREAR 200
           +H    +    +   +A+
Sbjct: 180 VHTGCTRNEYFEWKIDAK 197


>UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK1_9DELT
          Length = 178

 Score = 84.4 bits (207), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 51/175 (29%), Gaps = 55/175 (31%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFA--------------TLSPLFDAERFGIKVVPSPRHA 79
           +     V  V   GC+GC +                    SPL D + F       P   
Sbjct: 1   MSGRLRVATVWLDGCSGCHMSFLDMDELLLELAPRLELAYSPLVDRKEF-------PDRV 53

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI------------------ 121
           D+ L  GAV+        R        ++ ++ G C   G +                  
Sbjct: 54  DLALLEGAVSTPEDEAKARL--VRAHSRLVVALGDCACQGNVPALRNRLDNEQLLDLVYR 111

Query: 122 -FHDLYCVWG-------------GTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
              D                      +++ VD+++PGCPP PAA +      L  
Sbjct: 112 QQADGPAAAPPDRNVPPLLTHSLPLHRVIAVDLFLPGCPPPPAAIVRALTAVLDG 166


>UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2 Tax=Roseiflexus
           RepID=A5UWN9_ROSS1
          Length = 127

 Score = 84.4 bits (207), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPAL 97
             VYR + G C GC++E+ A L+         I    +P  AD+LL TG +T   +   +
Sbjct: 2   IQVYRFNTGSCGGCDLEVIAALAAAA-----DIDWAATPHEADVLLLTGPLTTDTKKAFM 56

Query: 98  RAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP--GCPPTPAATLYG 155
              Q        I+ G C   G  F       GG   I  + V++   GCPPTP   +  
Sbjct: 57  ALLQELDHRAPIIAVGRCAIDGHPFG-----RGGVAVIPNLTVHLSLDGCPPTPTQIVEA 111

Query: 156 FAMALGLLEQKIHARG 171
                   E       
Sbjct: 112 IRTIAMDREDGAAGER 127


>UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Denitrovibrio
           acetiphilus DSM 12809 RepID=C1SPM4_9BACT
          Length = 310

 Score = 84.0 bits (206), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 63/235 (26%), Gaps = 41/235 (17%)

Query: 37  SAYVYRVDCGGCNGCEIEIFA-TLSPLFD----AERFGIKVVPSPRHA------------ 79
              +  +    C GC   +     +   D      R  +    S                
Sbjct: 40  RPQLVFIQGQSCTGCSTSLMYGNETDFIDFIMKLVRVQVHPNLSLSQGNGYLNMLDEVTS 99

Query: 80  ---DILLFTGAVTRAMRSPALR--------AWQSAPDPKICISYGACGNSGGIFHDLYCV 128
               IL+  G++   M+   +           +        ++ G+C   GGI       
Sbjct: 100 AGGHILVLEGSIPAEMKKACMLGEEPLYDALKKHLEKASAVVASGSCSCFGGIPASGANE 159

Query: 129 WGGTD--------KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
            G  D         I    + IPGCP  P   +   A  LG    K+     G   +   
Sbjct: 160 TGAIDIVQYMRETGISKPLIKIPGCPVHPDRLMGTVAYILGA--GKMPDMEDGIPVQYFG 217

Query: 181 EILHGDMVQPLRVKVD---REARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEA 232
           +++H +  +      D    +  +       ++     +T+      +    +  
Sbjct: 218 DLIHNNCTRFQYFSQDIYLEDYAKDKHSCLLKKGCRGTITKSDCALRRWNGGVNV 272


>UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Opitutus
           terrae PB90-1 RepID=B1ZXG1_OPITP
          Length = 334

 Score = 84.0 bits (206), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 58/257 (22%), Gaps = 64/257 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVPSP-----RHADIL-------- 82
              V    C  C GCE  I      +    E   I   P       +  D L        
Sbjct: 3   KPKVAFYWCAACGGCEEAIVDFAEDILGVIEAVDIVFWPVAMDFKKKDVDALPDQGITAT 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI--------------------- 121
              GA+  + +    +        +  I+YGAC + GGI                     
Sbjct: 63  FLNGAIRTSEQEEMAQLL--RRKSQFLIAYGACAHLGGIPGLANQFDREQLLSYVYEQTP 120

Query: 122 ----------------------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
                                   +        D++V VD YIPGCPPTP  T       
Sbjct: 121 TIDNPTHVRPQPAHQNNGHSLTLPEFRHTVRSLDQVVAVDYYIPGCPPTPKITKAAITAL 180

Query: 160 LGLLEQKI-----HARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADD 214
           L                      +             +     +            +   
Sbjct: 181 LEGKLPPRGSVLAPDVALCNECARKPSKPATLSFTEFKRPHLAKIDPDLCLLAQGFVCMG 240

Query: 215 YLTQLGQGEEQVARWLE 231
             T+ G      A  + 
Sbjct: 241 PATRAGCEALCPAGNMP 257


>UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subunit n=4
           Tax=Anaeromyxobacter RepID=Q2IH66_ANADE
          Length = 491

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 62/262 (23%), Gaps = 67/262 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATL---SPLFDAERFGIKVVPSPRH-----------ADIL 82
              V       C GCE  +       + L +     +  V +               D+ 
Sbjct: 168 KPRVAFYWNASCGGCEEAVVDLGDGFAGLLERVEVVLWPVATDHKRADVEALPDGGIDLA 227

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLY 126
              GAV    +     A       +  +++GAC + GG+                +    
Sbjct: 228 FVNGAVRLDEQE--EWARLLRRKARTVVAFGACAHLGGVVGLGNLSEPEALLEAAYRAPP 285

Query: 127 CVWGG---------------------------TDKIVPVDVYIPGCPPTPAATLYGFAMA 159
            V                                 +V VD  IPGCPP+PA         
Sbjct: 286 SVSNPEAPLPGGPVRADGATLSLPVLLPRTLTLADVVSVDYTIPGCPPSPAVVQAALDAL 345

Query: 160 LGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQL 219
           LG          P      P   L  D  +             A  R      D  L  L
Sbjct: 346 LGDAPP------PRGAVLAPDVSLCEDCPRK--GSRPERIELHALRRLATSAVDPELCFL 397

Query: 220 GQGEEQVARWLEAENDPRLNEI 241
            QG   +         P   E 
Sbjct: 398 AQGLVCMGPATRQGCQPGCVEA 419


>UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Frankia sp. EAN1pec
           RepID=A8LH34_FRASN
          Length = 400

 Score = 83.6 bits (205), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 62/246 (25%), Gaps = 43/246 (17%)

Query: 11  NGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP--------L 62
            GI   + +   +A   A  L K+ R   V  ++   C G       + +P        +
Sbjct: 28  AGITATLALPAQLAPRVAYALDKVDR-PTVIWLEFQDCAGDSEAFLRSRNPSAADLILGM 86

Query: 63  FDAERFGIKVVPSPRHA------------DILLFTGAVTRAMRSPA--------LRAWQS 102
              +     +  S   A             +++  G++   +                ++
Sbjct: 87  ISLDYHETVMAASGTAAEKARDDAVAKGGHLVVVEGSIPTGIPGACTIGGKSAEDILREA 146

Query: 103 APDPKICISYGACGNSGGIFHDLYCVWGG--TDKIVP--VDVYIPGCPPTPAATLYGFAM 158
                  I+ G C   GGI        G    + +V     V + GCP            
Sbjct: 147 VRGAAGIINVGTCSAFGGIPAAGPNPTGAVRVEDVVGGVPVVNLTGCPVNADNLTATIVH 206

Query: 159 ALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARR---------LAGYRYGR 209
            L    +               + +H    +         A +            YR G 
Sbjct: 207 HLT-FGEFPARDRFSRPLFAYGQRIHDTCQRRGHFDAGEFAEQWGDAGHRNGWCLYRLGC 265

Query: 210 QIADDY 215
           +    +
Sbjct: 266 KGPSTF 271


>UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GED7_9FIRM
          Length = 254

 Score = 83.2 bits (204), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 29/172 (16%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATL------SPLFDAERFGIKVVPS-PRHADILLFTG 86
           +     V       C+GC++E             L D   F +    + P   DI    G
Sbjct: 1   MAELPKVAIFKFASCSGCQLEFLNLEPVLLDLLGLVDLTHFVMARRENKPGPYDIGFVEG 60

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG---------------- 130
           ++         R  Q+  D  + ++ GAC   GG+                         
Sbjct: 61  SIVNP--EDIERLKQARRDCGLLVAIGACACHGGLQSLNNGTPQREVEARVYEHPAEVSS 118

Query: 131 ----GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
                 D+ V +D  + GCP      +     AL  +  +I         + 
Sbjct: 119 LKSYPVDEYVDIDAKLSGCPINKNELVEFVKSALLGVTPRIRPHCVCVECKL 170


>UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=29 Tax=Bacteria
           RepID=Q2J4E9_FRASC
          Length = 278

 Score = 83.2 bits (204), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 46/173 (26%), Gaps = 30/173 (17%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAE---RFGIKVVPSPRH----ADILLFTGAVT 89
              +       C+GC++ +      L            +  S        D+ L  G+VT
Sbjct: 17  RPRLAVWKFASCDGCQLTLLDCEDELLSLAGEIDVSYFLEASSATVDGPYDLSLVEGSVT 76

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI---------------------FHDLYCV 128
                   R  Q     +  ++ GAC  +GGI                     +      
Sbjct: 77  T--EQDVERIHQVRAASRRLVTIGACATAGGIQALRNFADVGDFLAAVYATPAYVSTLAT 134

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE 181
                  V VD  + GCP  P   L   +  L      I +       ++   
Sbjct: 135 STPISTHVRVDFELQGCPINPRQLLEVISAFLARRRPNISSSAVCTECKRRGT 187


>UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Persephonella
           marina EX-H1 RepID=C0QP84_PERMH
          Length = 249

 Score = 82.8 bits (203), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 30/169 (17%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAE---RFGIKV----VPSPRHADILLFTGAVTRAM 92
           V       C+GC+I  F     L   E   R    +           DI    G+V+   
Sbjct: 4   VGIFKFASCDGCQISFFDISEMLSHLEEKVRIKYFIEGQDRNEFERFDISFIEGSVSTPE 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGI--------FHD-------------LYCVWGG 131
           +    +  +     +  ++ GAC +SGGI        + D                    
Sbjct: 64  QE--EKVKKIRDVSEYVVTIGACSSSGGIQSVRNFSDYKDIVCSVYPKPEMIKSLERSRP 121

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
               + VD  I GCP    A L      +   +            ++  
Sbjct: 122 VSDYIDVDFEIRGCPINKEALLEVIYSVILGKKPYNPEYPVCMECKRKG 170


>UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKF2_SYNFM
          Length = 300

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 62/241 (25%), Gaps = 57/241 (23%)

Query: 48  CNGCEIEIFATLSPLFD-AERFGIKVVP-----------------SPRHADILLFTGAVT 89
           C GCE+ I      L D  ER  I   P                 S   AD+ + +G + 
Sbjct: 14  CAGCEVAILDQGELLLDILERISIVHAPILMDSKYRDPAGDSDVVSIPRADVGIVSGGI- 72

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI---------------------------- 121
                    A        I I+ G+C   GGI                            
Sbjct: 73  -RTEHGLAVAKAVRESCDILIANGSCACMGGIPSLANLVPPDVLKQGVPNLEHGVEDGDF 131

Query: 122 -FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
               L       +++VPVD+++PGCPP            L      +             
Sbjct: 132 ELPPLTARVAAINEVVPVDIFLPGCPPPTHLFAAALQAVLEGRSFDLPEDTVC------- 184

Query: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240
                   +   V  D   +     R       D    + QG   +     +    R  +
Sbjct: 185 -NECSKTKEKRTVFADNGLQFPEMLRPLETPPLDKRCLIEQGFFCMGAATRSGCGARCTQ 243

Query: 241 I 241
           +
Sbjct: 244 V 244


>UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Eggerthella
           lenta DSM 2243 RepID=C8WGI4_EGGLE
          Length = 261

 Score = 80.5 bits (197), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 61/218 (27%), Gaps = 51/218 (23%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVV------PSPRHADILLFTGAVTR 90
             V  V    C GC+++I    + L D   +  ++        P P   D+ +  GAVT 
Sbjct: 15  PRVVVVGLASCFGCQLQITNAEAHLLDVLGQIDLRYWQLASSDPMPEDFDVAIIEGAVTT 74

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGI-------FHDLYCVW-------------- 129
                              I+ GAC  + GI       F +                   
Sbjct: 75  EESEA--TVRSLREKAGAIIAVGACATTAGIPGMAAEGFLERPGQVYDRVPSACGDMVAP 132

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
                ++ VD  +  CP      +     AL            G     P+  + GD  +
Sbjct: 133 RAVGAVIDVDFEVRACPIDSYDFIDVLQRAL-----------YGSNKTYPSRTMCGDCKR 181

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
                        + +    Q+    +T  G G + V 
Sbjct: 182 N----------ETSCFFGKGQLCLGLVTTAGCGAKCVN 209


>UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Magnetococcus sp. MC-1 RepID=A0L609_MAGSM
          Length = 282

 Score = 79.7 bits (195), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 46/187 (24%), Gaps = 33/187 (17%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAE-RFGI--KVVPSPRHAD------ILLFTG 86
           +   V      GC G ++ I    + L     R  I   ++ S + +D      + +  G
Sbjct: 10  KKLRVGIYSFTGCAGDQLAILNDTTVLLGLAQRAEICSFIMASSQESDQEGRLDLAIVEG 69

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV------------------ 128
           ++       AL   +   D    ++ G C   GG+                         
Sbjct: 70  SICSEQERTALEKLRQRSDA--LMALGTCAVWGGLPAMNAKTIPIHTMKEQVYGDSTVFP 127

Query: 129 ----WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
                    + V VD  + GCP             L  +                     
Sbjct: 128 GAREAEPLSRFVKVDYAVTGCPIEIDEFAQVVTAILNGVRPVQTDASVCSECRIAENRCL 187

Query: 185 GDMVQPL 191
               + +
Sbjct: 188 VQAERRV 194


>UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2
           Tax=Aciduliprofundum boonei T469 RepID=B5IEA4_9EURY
          Length = 248

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 43/166 (25%), Gaps = 27/166 (16%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERF-GIKVVPSPRHAD-----ILLFTGAVTRAMR 93
           +       C GC ++     + + +  ++ GI      +  +     I    G  T    
Sbjct: 3   IGIFSLSCCEGCSVQFLNLENEILEILKYMGINNFRLAKEINEWPVEIAFVEGTPTNRDE 62

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFH-----------DLYCVWGG--------TDK 134
              ++  +     KI ++ G C  +GG+              +Y                
Sbjct: 63  --IIKLLKIRKYSKILVALGTCAATGGVPAIVNTLEKKEAMKIYNGVPPKIPIDAKQLKY 120

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
            V VD  + GCP +           L     +              
Sbjct: 121 YVDVDYILYGCPFSKEELKELITSVLLGKGFRNKRYSVCVECTLRE 166


>UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing
           hydrogenase), gamma subunit n=3 Tax=Euryarchaeota
           RepID=Q0W6U0_UNCMA
          Length = 306

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 69/270 (25%), Gaps = 53/270 (19%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADI-------LLFTGAVTR 90
             +       C GC + +      L +     +++V SP   D+        +       
Sbjct: 2   IKLATEPLASCAGCHMSLLDLHEDLLELLN-KVEIVYSPILMDVKEPPEDIDIAIIGGAI 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGG------------IFHDLYCVWGG------- 131
             +    R  +     K  I++G C   GG            I + +Y    G       
Sbjct: 61  RNKENMERVKKLRQRAKTVIAFGTCACYGGVSGLSILHSRDEILNGVYTNRQGTTTNVIP 120

Query: 132 -------------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
                           ++ VD YI GCPP            +      +  +      ++
Sbjct: 121 NQDIPDLLYRGYAVGDVIKVDYYITGCPPKEFFLRQILLPLIEGRIPDLQKKSVCSECDR 180

Query: 179 PAEILHGDMVQPLRVKVDREARRLAGY---RYGRQIADDY----------LTQLGQGEEQ 225
              ++    ++     V  E   L G      G                     G     
Sbjct: 181 EMVLVKDWKIKRRYEGVPEEKTCLLGQGYICLGSVTFGRCHALCTHHGIPCHGCGGPSLD 240

Query: 226 VARWLEAENDPRLNEIVSHLNHVVEEARIR 255
           V R    +    L   + HL  + ++   +
Sbjct: 241 VLREPCRDIYNTLVMRIQHLTELPQQEIEK 270


>UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteobacteria
           RepID=Q2W8A6_MAGSA
          Length = 384

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 67/241 (27%), Gaps = 63/241 (26%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER----FGIKVVPSP-----RHA--- 79
           ++   +  +Y + CGGC G  +    + +P  D  +     GI VV  P       A   
Sbjct: 69  RRPGMNLNLYWLQCGGCGGDTMSFLNSETP--DILQLFSGLGIDVVYHPSLSNTSQAEQH 126

Query: 80  -------------DILLFTGAV-----------TRAMRSPALRAWQSAPDPKICISYGAC 115
                        DIL+  GAV           T+  R         A   +  ++ G C
Sbjct: 127 SQLEVISSGEMPLDILVVEGAVLRGPAGTGMYDTKGRRPKKDIVAALARQARFVVAAGTC 186

Query: 116 GNSGGI------------FHDL-YCVWGGTD----KIVPVDVYIPGCPPTPAATLYGFAM 158
              GG             FH      + G D      +PV + + GCP  P         
Sbjct: 187 AAFGGFGARTEIEATGLQFHRSEPGGFLGADFRAKSGLPV-LNLSGCPCHPQVLSSVLTA 245

Query: 159 ALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQ 218
                  ++              ++H    +    +   E        +G +    +   
Sbjct: 246 LATG--AELPLAPLNRPLPWYGMMVHQGCTRNEYHEYRVEEDN-----FGEKGCLFFHMG 298

Query: 219 L 219
            
Sbjct: 299 C 299


>UniRef50_Q6A6I9 NADH dehydrogenase subunit n=2 Tax=Propionibacterium acnes
           RepID=Q6A6I9_PROAC
          Length = 132

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 15/129 (11%)

Query: 39  YVYRVDCGGCNGCEIEIFAT---LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
            VY VD      C +E  A     +P+ +    G  +        ++L +G VT  +   
Sbjct: 11  SVYVVDLA-LACCGVESGAAVLANAPVREEIPDGAPI--------VVLVSGTVTTGLAPV 61

Query: 96  ALRAWQS--APDPKICISYGACGNSGGIFHDLYCVWGGT-DKIVPVDVYIPGCPPTPAAT 152
                       P   +++GAC  +GG + D   V  G  D  V  D +IPGCPP P   
Sbjct: 62  VSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPPGPETL 121

Query: 153 LYGFAMALG 161
               A +  
Sbjct: 122 TGLLASSRE 130


>UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydrogenibium azorense
           Az-Fu1 RepID=C1DUE6_SULAA
          Length = 312

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 46/206 (22%), Gaps = 46/206 (22%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFD--AERFGIKVVP----------------SPRHA-D 80
           +  +    CNG      +    + D       I   P                S + + +
Sbjct: 11  LVWIQGLTCNGNSHSFLSINDTMLDVFLSNINILYHPMLTSEMEFKDVYKLLLSGKESLN 70

Query: 81  ILLFTGAVTRAMRSPALRAWQSAP-------DPKICISYGACGNSGGIFHDLYCV-WGGT 132
            L+  GAV         + +                ++ G C   G  F  LY     G 
Sbjct: 71  FLVVEGAVNTKKDEVFFQGFDVFEILNNLKDKSDYILAVGNCACYGN-FPALYNENVKGL 129

Query: 133 DKIVP----------------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
                                  + I GCP  P   +             I         
Sbjct: 130 QYRFKDKGGFLGEDFKTKSGYPIINITGCPAHPEWIVRTILSL--NFGYDIKLDNLNRPK 187

Query: 177 EQPAEILHGDMVQPLRVKVDREARRL 202
           +    + H   ++    +   EA   
Sbjct: 188 DFYMYLAHDGCIRNEYFEWKVEAHEF 213


>UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Halothermothrix
           orenii H 168 RepID=B8D1R7_HALOH
          Length = 334

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 43/215 (20%), Gaps = 41/215 (19%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD-----AERFGIKVV 73
           +   I  +         +   V  ++        I    T  P  D              
Sbjct: 21  LSREILRVVRDFRSNNGKKLPVIWIETNDSGDNNISFMNTTYPYLDQVFEDIIDLYYSNT 80

Query: 74  PSPRHA-DI----------------LLFTGAVTRAMRS--------------PALRAWQS 102
                  D                 L+  GA+                            
Sbjct: 81  FMAAQGEDAYQILKKVALREKREFTLVVEGAIPLKANGRYNITFITDEGPVTAVELVRWL 140

Query: 103 APDPKICISYGACGNSGGIFHDLYCVWGGT---DKIVPVDVYIPGCPPTPAATLYGFAMA 159
               K  ++ G C + GG       + G     D +    + + GCP  P   +   A  
Sbjct: 141 GELAKYAVAVGTCASFGGASAASPNITGSVALGDVLDRQIINVSGCPINPDWFVGTLAHL 200

Query: 160 LGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK 194
              +         G  +      +H    +     
Sbjct: 201 Q--MYGLPDLDRLGRPELFYQFTVHRHCQRRSYFD 233


>UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Geobacter
           RepID=B5EBV9_GEOBB
          Length = 251

 Score = 77.0 bits (188), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 45/174 (25%), Gaps = 31/174 (17%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATL------SPLFDAERFGI-KVVPSPRHADILLFTGAV 88
               +       C+GC++ +          +  FD   F + + V      D  +  GAV
Sbjct: 2   NRPRLAIAGLTACSGCQLTLLNCEDELAQVAARFDLVSFPMAESVEGGAPFDAAIVEGAV 61

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGI-----------------FHDLYCVWG- 130
           +          ++     ++ ++ G C   GG+                 + D       
Sbjct: 62  STPGD--LANLFRLRNSSRLLVALGTCAIFGGVAAMNNGVSTREELVAAVYGDGEKTVES 119

Query: 131 ----GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
                    V VD  I GCPP     +      L      +             
Sbjct: 120 FAPAPLTNFVSVDFSITGCPPEKQEVMALLCALLNGTLPPLATYPVCTECRSRE 173


>UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 Tax=Ixodes
           scapularis RepID=B7QG38_IXOSC
          Length = 162

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            + +    +P+  IS G+C N GG +H  Y V  G D+I+PVD+Y+PG
Sbjct: 78  RKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 125


>UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria RepID=C0QPV6_PERMH
          Length = 306

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 39/148 (26%), Gaps = 28/148 (18%)

Query: 80  DILLFTGAVTRAMRSPALRAW-------QSAPDPKICISYGACGNSGGIFHDLYCV---- 128
           D L+  GAVT   R   +  +       +        I+ G C   G  +  LY      
Sbjct: 63  DFLIIEGAVTSNKRFHRIGKYSIKYIINKLKSKADYIIAVGNCAVHGN-YPALYNPDQIT 121

Query: 129 -----WGGTDKIVP---------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
                  G   ++P           + I GCP  P             L+  +       
Sbjct: 122 GIQFGLNGKKGLLPQKFRTKSGYPVINITGCPVHPEWITKTVLTLSYGLD--LKLDSQNR 179

Query: 175 LDEQPAEILHGDMVQPLRVKVDREARRL 202
             E    + H    +    +   EA   
Sbjct: 180 PKELYMYLSHDGCTRNEYFEWKVEAEEF 207


>UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine translocation
           pathway signal n=1 Tax=delta proteobacterium MLMS-1
           RepID=Q1NRB7_9DELT
          Length = 299

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 65/253 (25%), Gaps = 54/253 (21%)

Query: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL-------FDAERFGI 70
            + E +A+    +     +   +  +    C GC I +    SP        +    F  
Sbjct: 21  GLPEPVAAALKEID----QVPKILYLQGLSCTGCSISLLQAASPTPLEMITDYSQLAFHT 76

Query: 71  KVVP-SPRHA--------D------ILLFTGAVTRAMRSP-----------ALRAWQSAP 104
            +   S   A        D       L   GAV   M                RA ++  
Sbjct: 77  DLSSTSGAQAMELINAFIDGEAGEYFLAIEGAVPGTMPRACVIDHQPFASYLERAARTMS 136

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGTD--------KIVPVDVYIPGCPPTPAATLYGF 156
                ++ G+C   GGI        G           ++ P+ + I GCP  P    +  
Sbjct: 137 GA---VAVGSCACDGGIPAAEGNPTGAIGLREFYRQRELEPLLIDIRGCPIHPDWLWHTI 193

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYL 216
              + +    +     G         LH    +        E         G       L
Sbjct: 194 THLVKVGLPSLVN---GAPQAFFQRRLHELCPR--YYDFQEEIFAEKMGERGCLFKLGCL 248

Query: 217 TQLGQGEEQVARW 229
             +    +   RW
Sbjct: 249 GPI-TFADCPTRW 260


>UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ferroglobus placidus
           DSM 10642 RepID=C8S958_FERPL
          Length = 355

 Score = 73.2 bits (178), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 69/268 (25%), Gaps = 56/268 (20%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-LFD-A 65
           +    +     + +  + +  +  +       +  +     + C + +     P L+D  
Sbjct: 10  KALTTLGAAAFLSKYKSFIVEAFEEAKSNDVKLVWLQGQSDSACTVSLLQAADPDLYDAV 69

Query: 66  ERFGIKVVPSPR----------------HADILLFTGAVTRAMRSP-------------- 95
           E   + +   P                   D+L+  G++                     
Sbjct: 70  EELKVGIYFHPTVMPDFGDKAIKVLEEIEPDVLVLEGSIPTGDMEYACTFGERNGKPVTL 129

Query: 96  ALRAWQSAPDPK-ICISYGACGNSGGIF------HDLYCVWGGTDKIVP------VDVYI 142
                +  P  K   + +G+C   GGI               G  + +         V +
Sbjct: 130 VEWLNELIPKTKVAVVGFGSCATYGGIPSAKDFEGKSPTNAVGLYQFLKDKKPAVPVVLL 189

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQP-------LRVKV 195
           PGCP  P   L   A  L  +  K+            ++++H +  +             
Sbjct: 190 PGCPGHPDWLLVTLAAVLLGV--KVDLDDYWRPKWFFSQLIHDNCARRGFYDEGWFAKSF 247

Query: 196 DREA--RRLAGYRYGRQIADDYLTQLGQ 221
           +          ++ G +    Y      
Sbjct: 248 EESDLKYETCLFKLGCRGPMTYAACSET 275


>UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Clostridiales
           RepID=B1I618_DESAP
          Length = 375

 Score = 73.2 bits (178), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 69/272 (25%), Gaps = 48/272 (17%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA---E 66
                 P           A+  +++++   V+ ++   C+G  + +     P F+A   E
Sbjct: 27  TAAGSRPRARSTRAPEPPAADTERLEKHPLVW-LETNTCHGNILSLMNGQHPDFEAIMRE 85

Query: 67  RFGIKVVPS-----PRHA-------------D-ILLFTGAVTRAMRSPALRA-WQSAPDP 106
              +    +        A             D IL+  G V  A          +   +P
Sbjct: 86  LLDVYWTNTLMGAKGHQAIEVLEKVMVERPGDYILVVEGTVPTAAGGRYAHIGLRGNGEP 145

Query: 107 ----KICISY----------GACGNSGGIFHDLYCVWG--GTDKIVP-VDVYIPGCPPTP 149
                  +            G+C   G  F       G      +V    + +PGCP  P
Sbjct: 146 WTAWDAVVELAAAAKHVVAVGSCAAWGLPFGAHPNPTGSKPVSAVVDRTVINVPGCPAHP 205

Query: 150 AATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK----VDREARRLAGY 205
              L   A  +                    E +H    +    +              Y
Sbjct: 206 DWILGTLAHLI--WYGVPELDAMNRPVVFYGETIHNLCQRRHYFESGIFAGEIGEPWCLY 263

Query: 206 RYGRQIADDYL-TQLGQGEEQVARWLEAENDP 236
           + G +    Y      Q   +   W    N P
Sbjct: 264 KIGCKGPVTYADCPSRQWCGEHMNWPVGANTP 295


>UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_RALEH
          Length = 347

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 52/220 (23%), Gaps = 54/220 (24%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD--AERFGIKVVPSPRHA---------------- 79
             V  +  GGC GC + +    +  F    +  GI ++  P  +                
Sbjct: 17  LNVLWIQSGGCGGCSMSLLCADTTDFTGMLKSAGIHMLWHPSLSLESGVEQLQILEDCLQ 76

Query: 80  -----DILLFTGAVTRAMR-------------SPALRAWQSAPDPKICISYGACGNSGGI 121
                  L   GA+ R                       + A      ++ G C   GGI
Sbjct: 77  GRVALHALCVEGAMLRGPHGTGRFHLLAGTGVPMIEWVSRLAAVADYTLAVGTCAAYGGI 136

Query: 122 FHDLYCVWGGTDKIVPVD------------------VYIPGCPPTPAATLYGFAMALGLL 163
                            D                  + + GCP  P       A+    L
Sbjct: 137 TAGGGNPTDACGLQYEGDQPGGLLGLNYRSRAGLPVINVAGCPTHPGWVTDALALLSARL 196

Query: 164 EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLA 203
                    G       +++H    +    +    A + +
Sbjct: 197 LTASDLDTLGRPRFYADQLVHHGCTRNEYYEFKASAEKPS 236


>UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Actinobacteria
           (class) RepID=D1VJL8_9ACTO
          Length = 416

 Score = 71.7 bits (174), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 65/281 (23%), Gaps = 77/281 (27%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCG-GCNGCEIEIFATLSPLFDAERFG--- 69
           P      E + + +           ++  ++ G  C+G  + + A   P  +    G   
Sbjct: 41  PAEQVAPERVPAWEDQA------PIHLLWINAGLSCDGDSVALTAATQPSIEEIALGALP 94

Query: 70  -----------IKVVPSPRH-----------AD-------ILLFTGAVTRA--------- 91
                      I     P             AD       +L+  G++            
Sbjct: 95  GLPKVAVHWPLIDFDSGPEQGADAFLEWFRKADRGELDPFVLVVEGSIPNERINGDGYWT 154

Query: 92  --------MRSPALRAW--QSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDKIVPVD 139
                    +   + AW  + AP     ++ G C   GGI           G    +  D
Sbjct: 155 GFGSDQATGQPITVNAWLDRLAPKALAVLAVGTCATYGGIHAMAGNPTGAMGVPDYLGWD 214

Query: 140 ---------VYIPGCPPTPAATLYGFAMAL---GLLEQKIHARGPGELDEQPAEILHGDM 187
                    V +PGCP  P          L         I               +H   
Sbjct: 215 WKSSAGIPIVCVPGCPIQPDNLSETIVYLLYQASGQAPMIPLDDQLRPRWLFGTTVHDGC 274

Query: 188 VQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVAR 228
               R     E R    Y  G       L   G   +    
Sbjct: 275 ---DRAGFYEEGRFAHAY--GEPECLVKLGCWGPVVKCNVP 310


>UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), small subunit n=2
           Tax=Euryarchaeota RepID=Q0W5V7_UNCMA
          Length = 388

 Score = 69.7 bits (169), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 58/245 (23%), Gaps = 67/245 (27%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSP--------------LFD--AERFGIKVVPSPRHAD-- 80
            +  +   GC GC         P                D    + GI +    +  D  
Sbjct: 49  KLLWLRGSGCGGCTASFLNGGYPDVLAALDSVGAVITYHDGLMAQQGITLDGVSKTPDTY 108

Query: 81  ---------------ILLFTGAVTRAMR----------SPALRAW-QSAPDPKICISYGA 114
                          +L+  GA+                     + ++A   +  I+ G 
Sbjct: 109 NALKKLDLLIDSGDYVLVVEGAIPNGPDGTGKYCTTGGRAVKEIFSEAAEKAETIIALGT 168

Query: 115 CGNSGGIFHDLYCVW-------------GGTDKIV---PVDVYIPGCPPTPAATLYGFAM 158
           C   GGI      V               G    +      + +PGCP  P   L   A 
Sbjct: 169 CAAFGGISSAGRSVTDARGVAYTGASRFNGILSELNMRKKVINVPGCPAHPDWFLLTLAD 228

Query: 159 ALGLLEQKIHARGPGELDEQPAEI-LHGDMVQPLRVKVDRE----ARRLAGYRYGRQIAD 213
            L     ++            ++  +H    +       +     A     Y  G +   
Sbjct: 229 VLSG--AEVTVDDYRRPAAFFSKSAIHDTCTRRGSYDQGQRDTQFAGEGCLYGAGCKGMI 286

Query: 214 DYLTQ 218
            Y   
Sbjct: 287 TYADC 291


>UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=10 Tax=Bacteria
           RepID=D2ATL3_STRRD
          Length = 358

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 52/224 (23%), Gaps = 66/224 (29%)

Query: 38  AYVYRVDCG-GCNGCEIEIFATLSPLFDAERFG--------------IKVVPSPRH---- 78
            ++  ++ G  C+G  + + A   P  +    G              I     P      
Sbjct: 20  VHILWINAGLSCDGDSVALTAATQPSIEEIVLGALPGLPKVAVHWPLIDFESGPMQGADV 79

Query: 79  -------AD-------ILLFTGAVTRAMRSP-------------------ALRAWQSAPD 105
                  AD       +L+  G++                          +    + AP 
Sbjct: 80  FIEWFFKADRGELDPFVLVVEGSIPNESIKQEGYWCGFGNNPETGQPMTTSEWLDRLAPK 139

Query: 106 PKICISYGACGNSGGI--FHDLYCVWGGTDKIVPVD---------VYIPGCPPTPAATLY 154
               ++ G C   GGI           G    +  D         V +PGCP  P     
Sbjct: 140 ATAVLAAGTCATYGGIHAMAGNPTGAMGVADYLGWDWRSKAGLPIVNVPGCPIQPDNLSE 199

Query: 155 GFAMAL---GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
                L         I             + +H    +    + 
Sbjct: 200 TILYLLYQVAGQAPMIPLDEALRPTWLFGQTVHEGCDRAGYYEQ 243


>UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=Endoriftia persephone
           'Hot96_1+Hot96_2' RepID=UPI0001698F29
          Length = 156

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPSP------RHADILLFTGAVT 89
              +       C+GC++ +      L +      I             H D+ L  G+++
Sbjct: 7   KPTLAVHKFSSCDGCQLALLNLGEALLELPNYLEIVHFAEAGPSDPTAHVDLALVEGSIS 66

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFH 123
                   R  Q   +    IS GAC  +GGI  
Sbjct: 67  TP--EDIERIRQVRKNSDYLISIGACATAGGIQA 98


>UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Proteobacteria RepID=B1Y6B2_LEPCP
          Length = 313

 Score = 66.3 bits (160), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 53/211 (25%), Gaps = 54/211 (25%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFD--AERFGIKVVPSP--------------------R 77
           +  +  G C G  + I +  SP  +   + + I+++  P                     
Sbjct: 4   LLWLQTGSCGGDSLAILSADSPSLEQLLDSYSIELLWHPSLSNGHARRLDRVIDQILAGE 63

Query: 78  HA-DILLFTGAV-----------TRAMRSPALRAWQSAPDPKICISYGACGNSGGI--FH 123
            A DIL   G++                +        A      ++ G C   GGI    
Sbjct: 64  QALDILCVEGSIITGPRGTGLYDPWRGGAKMNLVRDLAAKAGAVVAMGTCAAYGGIHAAP 123

Query: 124 DLYCVWGGTDKIVP----------------VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                  G                        + + GCP  P A      +A       +
Sbjct: 124 PNPSDCTGLQFDHEQPGGLLGPGWRSRSGMPVINVAGCPAHPHAMTQT--LAALAAGLPL 181

Query: 168 HARGPGELDEQPAEILHGDMVQPLRVKVDRE 198
                       + ++H    +    + + E
Sbjct: 182 ELDAIHRPVSHFSTMVHQGCTRNEYHEYNIE 212


>UniRef50_A9B2V8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Herpetosiphon aurantiacus ATCC 23779
           RepID=A9B2V8_HERA2
          Length = 124

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 13/132 (9%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPAL 97
             VY ++ G      IE+      +       +    +P HADI + TG +   +R    
Sbjct: 2   IAVYHLNAGSTG---IEVRILAEAI--RSARNLTWAATPAHADIFVLTGPIPLLLRPALS 56

Query: 98  RAW-QSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI--VPVDVYIPGCPPTPAATLY 154
             W     D    I+ G     G  F       GG  ++  + V   I G PPT AA   
Sbjct: 57  NVWRDFIADRAPLIALGRASIDGHPFG-----RGGLAELPEIQVAAKIDGDPPTVAAIQA 111

Query: 155 GFAMALGLLEQK 166
           G   AL     K
Sbjct: 112 GIVQALNARTAK 123


>UniRef50_C7J5D7 Os07g0116900 protein n=3 Tax=Oryza sativa RepID=C7J5D7_ORYSJ
          Length = 114

 Score = 64.7 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRA 99
           C +E+    +  +D +RF +   PSPR +D ++  G +T  M     + 
Sbjct: 61  CAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPALGKT 109


>UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Flavobacteria
           bacterium MS024-2A RepID=C0BH99_9BACT
          Length = 384

 Score = 61.3 bits (147), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 34/155 (21%), Gaps = 18/155 (11%)

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIF--HDLYCVWGGTDKIVPVD---------VYI 142
             +    + +      ++ G C   GGI    +          ++  D         V I
Sbjct: 128 PSSSWVTRMSEHAAAVVAVGTCATWGGIPAAANNPTNSASVMDLLGEDYRSTLGLPVVNI 187

Query: 143 PGCPPTPAATLYGF---AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK----V 195
           PGC P             M L  L         G       E +H    +    +     
Sbjct: 188 PGCAPQGDNITETIVSVLMFLNGLTPLPEFDELGRPSWLFDETVHRGCTRAGFYEEGNFA 247

Query: 196 DREARRLAGYRYGRQIADDYLTQLGQGEEQVARWL 230
           +    +      G            +G        
Sbjct: 248 EEHGDKECLVEVGCWGPVVQCNINKRGAINHVGGC 282


>UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase) (Membrane-bound
           hydrogenase small subunit) n=23 Tax=Bacteria
           RepID=Q0RN51_FRAAA
          Length = 359

 Score = 60.9 bits (146), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 35/157 (22%), Gaps = 33/157 (21%)

Query: 81  ILLFTGAVTRAM-------------------RSPALRAWQSAPDPKICISYGACGNSGGI 121
           +L+  G++                        +      + AP     I+ G C   GGI
Sbjct: 92  VLVIEGSIPNENINGEGYWTSFGNDPDTGQPLTINWWIDRLAPRAWAVIAIGTCAAYGGI 151

Query: 122 --FHDLYCVWGGTDKIVPVD---------VYIPGCPPTPAATLYGFAMAL---GLLEQKI 167
                      G    +  D         V +PGCP  P   +      L          
Sbjct: 152 HAMAGNPTGSMGLLDYLGRDFTSAGNLPIVNVPGCPVQPDDFMETLTWLLYHAAGTAPPP 211

Query: 168 HARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAG 204
                          +H    +    +    A+    
Sbjct: 212 PLDDQHRPQWIFGRTVHEGCDRAGYYEQGDFAKDYNS 248


>UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small subunit n=9
           Tax=Methanosarcina RepID=Q46BG0_METBF
          Length = 411

 Score = 56.2 bits (134), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/197 (8%), Positives = 45/197 (22%), Gaps = 41/197 (20%)

Query: 81  ILLFTGAVTRAMRSPALRAW-----------QSAPDPKICISYGACGNSGGIFHDLYCVW 129
           +L+  GA++                      ++A +    ++ G C  +GG+      + 
Sbjct: 134 VLVSEGAISNGPEGSGKYLMLGGRTYKEIYAKAAKNALAIVAIGNCATNGGVNSAKSDIV 193

Query: 130 ----------------GGTDKIV---PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA- 169
                            G   ++      + + GCP  P          +    +     
Sbjct: 194 ELMDPRGVAFTMEDASKGILDLLGIEKPVINLTGCPTHPDWVFLTIGAVVLGKIKIPDDL 253

Query: 170 ----RGPGELDEQ--PAEILHGDMVQPLRVKVDR----EARRLAGYRYGRQIADDYLTQL 219
                          P  ++H +  +                   ++ G +    +    
Sbjct: 254 PYVLDHWKRPKVFFPPDHVIHDNCSRRGYYDRGEFELTVGGPKCLWKLGCKGPYTHADCA 313

Query: 220 GQGEEQVARWLEAENDP 236
            +       +      P
Sbjct: 314 TRNWNGHLNYCPQAGSP 330


>UniRef50_Q85WY3 ORF82a n=1 Tax=Pinus koraiensis RepID=Q85WY3_PINKO
          Length = 82

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 115 CGNSGGIFH-------DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
           C   G +++       D Y      DK++PVDVY P CP  P   +         
Sbjct: 21  CSCPGSMYYHIEMFGTDSYSTVHEVDKLIPVDVYSPDCPTEPEVIIDAITKLRER 75


>UniRef50_A7IHL6 Ni Fe-hydrogenase III large subunit-like protein n=4
           Tax=Proteobacteria RepID=A7IHL6_XANP2
          Length = 110

 Score = 53.2 bits (126), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            L+   D  R G+     PR A++LL    +   M   A  A+   P P+  +  G    
Sbjct: 41  ALAAGLDLSRAGLTEADGPRQANVLLVMLPLPAPMLKAATVAYAQMPRPRTVLVLGEGVI 100

Query: 118 SGGIFHDL 125
           +     D 
Sbjct: 101 APLPEPDS 108


>UniRef50_Q0FXV5 Putative uncharacterized protein n=1 Tax=Fulvimarina pelagi
           HTCC2506 RepID=Q0FXV5_9RHIZ
          Length = 391

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 55  IFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISY 112
           +   L  LF+  RF      SPRHA I L  G +    R    R     P P++ + +
Sbjct: 11  MRDRLERLFNDARF--VRAASPRHAAIFLIAGRMRLEDREDLRRLHDQMPHPRVTLLW 66


>UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 Tax=Bacteria
           RepID=C5Q420_STAAU
          Length = 37

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 219 LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
           LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR
Sbjct: 1   LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 37


>UniRef50_C9LFS3 2-methylthioadenine synthetase n=10 Tax=Bacteroidales
           RepID=C9LFS3_9BACT
          Length = 524

 Score = 40.8 bits (94), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 50  GCEIEIFATLSPLFDAERFGIKVVPSPRHADILLF-TGAVT----RAMRSPALRAWQSAP 104
           GC++    T S      R+G+  V +   ADI +  T +VT       R    R  +  P
Sbjct: 99  GCKLNFAETSSLRDTLARYGVSPVEAGETADICIVNTCSVTDVADHKCRQAIHRLTREHP 158

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           D    +  G       +  +    + G D ++
Sbjct: 159 DA-FVVVLG---CYAQLQPEKIARFPGVDLVI 186


>UniRef50_Q1AZS0 Ni Fe-hydrogenase III large subunit-like protein n=1
           Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZS0_RUBXD
          Length = 540

 Score = 40.8 bits (94), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGAC 115
             +   D E  G+ +   PRHA +LL  G +  A+R  A   +     P+  ++ GA 
Sbjct: 36  ARARGLDVEAAGLGMTGVPRHASVLLVVGELPAALRRAAAVVYAQMMRPRAVLAAGAG 93


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacter...   248   1e-64
UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bac...   211   3e-53
UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5        207   3e-52
UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   206   4e-52
UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   201   2e-50
UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=B...   199   6e-50
UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobac...   195   1e-48
UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   188   1e-46
UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen l...   188   1e-46
UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteoba...   187   2e-46
UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=c...   182   1e-44
UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=...   181   2e-44
UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=c...   180   3e-44
UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   180   4e-44
UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=B...   178   1e-43
UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=P...   178   1e-43
UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   178   2e-43
UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax...   177   3e-43
UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clost...   177   3e-43
UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase sma...   176   5e-43
UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID...   176   5e-43
UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   176   5e-43
UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Ta...   176   6e-43
UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 ...   175   1e-42
UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...   174   2e-42
UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=...   174   2e-42
UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   174   2e-42
UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   174   3e-42
UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=p...   174   3e-42
UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemm...   174   3e-42
UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Ta...   173   5e-42
UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   172   7e-42
UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=...   172   8e-42
UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=...   172   8e-42
UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   172   1e-41
UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=6...   171   2e-41
UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-li...   171   2e-41
UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax...   171   2e-41
UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   171   2e-41
UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=S...   171   2e-41
UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   170   3e-41
UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteob...   170   3e-41
UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n...   170   3e-41
UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (...   170   4e-41
UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH   170   4e-41
UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyce...   170   4e-41
UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehaloc...   170   5e-41
UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax...   169   6e-41
UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=c...   169   7e-41
UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminiba...   169   8e-41
UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=De...   169   8e-41
UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen l...   169   9e-41
UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   169   1e-40
UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   168   1e-40
UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ...   168   1e-40
UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=N...   168   2e-40
UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 T...   168   2e-40
UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   168   2e-40
UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=...   167   2e-40
UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=B...   167   3e-40
UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometr...   167   5e-40
UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit famil...   166   5e-40
UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...   166   7e-40
UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea R...   165   9e-40
UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   165   9e-40
UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=F...   165   1e-39
UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   165   1e-39
UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=P...   165   2e-39
UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd s...   164   2e-39
UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfit...   164   2e-39
UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Pr...   164   2e-39
UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria...   164   2e-39
UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=T...   164   3e-39
UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=...   164   3e-39
UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Ta...   164   4e-39
UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subuni...   164   4e-39
UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=c...   164   4e-39
UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   163   4e-39
UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, sma...   163   5e-39
UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=...   163   5e-39
UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteri...   163   6e-39
UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   163   7e-39
UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=De...   162   7e-39
UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydr...   162   7e-39
UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=...   162   9e-39
UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=...   162   1e-38
UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax...   162   1e-38
UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   161   2e-38
UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=...   161   2e-38
UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=T...   161   2e-38
UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=F...   160   3e-38
UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n...   160   3e-38
UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Pr...   160   3e-38
UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur prot...   160   4e-38
UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=F...   160   4e-38
UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collins...   160   4e-38
UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fr...   160   5e-38
UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collins...   160   6e-38
UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=c...   159   6e-38
UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteoba...   159   7e-38
UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Pr...   159   7e-38
UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=C...   159   7e-38
UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Ba...   159   8e-38
UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n...   159   1e-37
UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2...   159   1e-37
UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japoni...   158   1e-37
UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   158   2e-37
UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...   158   2e-37
UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 T...   157   4e-37
UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cy...   157   4e-37
UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=...   157   4e-37
UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfit...   157   5e-37
UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquifica...   156   5e-37
UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicob...   155   1e-36
UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   155   2e-36
UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Ba...   154   2e-36
UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helic...   154   2e-36
UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   154   4e-36
UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (Mbx...   153   4e-36
UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=...   153   5e-36
UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   152   7e-36
UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax...   152   8e-36
UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarch...   152   1e-35
UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteri...   151   2e-35
UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella...   151   2e-35
UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Peloto...   150   5e-35
UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacte...   149   8e-35
UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   149   9e-35
UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Ve...   149   9e-35
UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax...   149   9e-35
UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q...   149   1e-34
UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   149   1e-34
UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hy...   149   1e-34
UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A...   149   1e-34
UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea Rep...   148   1e-34
UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=D...   148   1e-34
UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Ba...   148   2e-34
UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Co...   148   2e-34
UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ...   148   2e-34
UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 ...   148   2e-34
UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   148   2e-34
UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Cl...   146   6e-34
UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Ep...   145   9e-34
UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes Re...   145   1e-33
UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n...   145   2e-33
UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=...   145   2e-33
UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacter...   145   2e-33
UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit ...   144   3e-33
UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   144   4e-33
UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   142   8e-33
UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   142   1e-32
UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Th...   142   1e-32
UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clost...   141   2e-32
UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meio...   140   4e-32
UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=T...   140   5e-32
UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   140   6e-32
UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ha...   139   8e-32
UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13...   139   9e-32
UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...   138   2e-31
UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=S...   137   4e-31
UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Cl...   137   5e-31
UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH Re...   136   8e-31
UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   135   1e-30
UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermopl...   135   1e-30
UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospiri...   135   1e-30
UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   134   3e-30
UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Ar...   133   4e-30
UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fe...   133   4e-30
UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   133   5e-30
UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN    133   6e-30
UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   132   1e-29
UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   131   3e-29
UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltapr...   131   3e-29
UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   129   7e-29
UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarch...   129   7e-29
UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...   129   1e-28
UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   129   1e-28
UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   128   1e-28
UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=I...   128   2e-28
UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=...   127   3e-28
UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulf...   127   3e-28
UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   127   3e-28
UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylo...   126   7e-28
UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   125   1e-27
UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subuni...   125   2e-27
UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   125   2e-27
UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Ep...   123   6e-27
UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Ac...   122   9e-27
UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=De...   122   9e-27
UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydr...   122   1e-26
UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   122   2e-26
UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   121   2e-26
UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine t...   120   5e-26
UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulib...   120   6e-26
UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxi...   119   7e-26
UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophi...   119   7e-26
UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   119   9e-26
UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Glucono...   119   9e-26
UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit fa...   118   1e-25
UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria Re...   118   2e-25
UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   117   5e-25
UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small sub...   116   6e-25
UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax...   116   8e-25
UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small sub...   116   9e-25
UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), s...   115   1e-24
UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl v...   113   4e-24
UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermo...   113   6e-24
UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shige...   112   1e-23
UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax...   111   2e-23
UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=...   110   4e-23
UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n...   109   1e-22
UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomirag...   108   1e-22
UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanoca...   108   1e-22
UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   108   1e-22
UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria R...   108   2e-22
UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase)...   108   2e-22
UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 ...   107   3e-22
UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   107   3e-22
UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   107   4e-22
UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   107   4e-22
UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   106   8e-22
UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax...   105   1e-21
UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteo...   105   2e-21
UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1 T...   105   2e-21
UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   104   2e-21
UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subuni...   104   3e-21
UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subuni...   104   3e-21
UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax...   103   5e-21
UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Fl...   103   5e-21
UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   103   6e-21
UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermoco...   103   6e-21
UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=...   103   6e-21
UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   103   7e-21
UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gam...   103   7e-21
UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetom...   102   1e-20
UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_...   102   1e-20
UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, puta...   102   1e-20
UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Ta...   102   2e-20
UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Ta...   101   3e-20
UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   100   4e-20
UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n...   100   4e-20
UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota ...   100   4e-20
UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   100   6e-20
UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subuni...   100   7e-20
UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=...   100   8e-20
UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    99   1e-19
UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    99   2e-19
UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    98   2e-19
UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    98   3e-19
UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit F...    98   3e-19
UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    97   5e-19
UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=...    96   9e-19
UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=...    96   1e-18
UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria ...    95   2e-18
UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl v...    95   2e-18
UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI         95   3e-18
UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=...    94   3e-18
UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 T...    93   8e-18
UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subuni...    93   8e-18
UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    93   8e-18
UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=G...    93   1e-17
UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subu...    92   1e-17
UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silv...    92   1e-17
UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subuni...    92   2e-17
UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    90   6e-17
UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 ...    90   9e-17
UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    90   9e-17
UniRef50_C1GND6 NADH-ubiquinone oxidoreductase 20 kDa subunit n=...    89   2e-16
UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    88   4e-16
UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    87   4e-16
UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    87   5e-16
UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit fa...    87   6e-16
UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    85   1e-15
UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    84   6e-15
UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=...    83   1e-14
UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteria...    78   2e-13
UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    77   7e-13
UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 ...    72   2e-11
UniRef50_Q6A6I9 NADH dehydrogenase subunit n=2 Tax=Propionibacte...    71   4e-11
UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=...    69   1e-10
UniRef50_A9B2V8 NADH ubiquinone oxidoreductase, 20 kDa subunit n...    62   2e-08
UniRef50_C7J5D7 Os07g0116900 protein n=3 Tax=Oryza sativa RepID=...    60   7e-08
UniRef50_Q85WY3 ORF82a n=1 Tax=Pinus koraiensis RepID=Q85WY3_PINKO     53   1e-05
UniRef50_A7IHL6 Ni Fe-hydrogenase III large subunit-like protein...    51   3e-05

Sequences not found previously or not previously below threshold:

UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Th...    70   1e-10
UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-termi...    64   4e-09
UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus ...    59   1e-07
UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-termi...    57   4e-07
UniRef50_Q0FXV5 Putative uncharacterized protein n=1 Tax=Fulvima...    43   0.006
UniRef50_A2QZP1 Contig An12c0160, complete genome n=1 Tax=Asperg...    43   0.012
UniRef50_C5U4Z7 Coenzyme F420-reducing hydrogenase alpha subunit...    42   0.014
UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n...    41   0.037
UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 ...    40   0.052
UniRef50_Q1AZS0 Ni Fe-hydrogenase III large subunit-like protein...    40   0.094

>UniRef50_P16433 Formate hydrogenlyase subunit 7 n=169 Tax=Bacteria RepID=HYCG_ECOLI
          Length = 255

 Score =  248 bits (633), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS
Sbjct: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG
Sbjct: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120

Query: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
           IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA
Sbjct: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180

Query: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240
           EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE
Sbjct: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240

Query: 241 IVSHLNHVVEEARIR 255
           IVSHLNHVVEEARIR
Sbjct: 241 IVSHLNHVVEEARIR 255


>UniRef50_C7MLM8 Ni,Fe-hydrogenase III small subunit n=20 Tax=Bacteria
           RepID=C7MLM8_CRYCD
          Length = 283

 Score =  211 bits (536), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 146/243 (60%), Positives = 184/243 (75%), Gaps = 4/243 (1%)

Query: 16  PMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS 75
           P  +D+ IA  KA+LL  IKRS Y+YRVDCGGCNGCEIEIF TL+P+FDAERFGIK + S
Sbjct: 37  PKVLDQKIAEAKAALLNDIKRSVYIYRVDCGGCNGCEIEIFGTLTPVFDAERFGIKNMAS 96

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PRHADIL++TGAVTRAMR PALRA+++APDPK+ +SYGACG +GGIFHD YCVWGGTDK+
Sbjct: 97  PRHADILVYTGAVTRAMRLPALRAYEAAPDPKLIVSYGACGCTGGIFHDNYCVWGGTDKL 156

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
            PVDVYIPGCPP+PA T+YGFAMALGLL QK+H +   E + + A I+  D+   LR ++
Sbjct: 157 FPVDVYIPGCPPSPAQTIYGFAMALGLLGQKLHEKHLVEGEGEQAPIMFADIPYKLRCEL 216

Query: 196 DREARRLAGYRYGRQIADDYLTQL----GQGEEQVARWLEAENDPRLNEIVSHLNHVVEE 251
           +REARR+AGY YGR + D ++  L    G+    V   +EAE+DPR  EI + L  ++  
Sbjct: 217 EREARRMAGYVYGRDLVDTFMQALEPEDGKVLTSVDALIEAESDPRKVEIYADLKQILTS 276

Query: 252 ARI 254
             +
Sbjct: 277 KIV 279


>UniRef50_A7GWN3 HsdS n=9 Tax=Proteobacteria RepID=A7GWN3_CAMC5
          Length = 274

 Score =  207 bits (527), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 110/236 (46%), Positives = 153/236 (64%), Gaps = 10/236 (4%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
            + K   LK IKRS  VYR+DCG CNGCEIEIFA ++P++D ERFG K+V +PRHADIL+
Sbjct: 16  LTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKLVANPRHADILI 75

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            +G VTR M  P LRA+++APDPKI +++GACG+SGGIFHD Y VWGG DKI+PVDVYIP
Sbjct: 76  CSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSSGGIFHDAYSVWGGIDKIIPVDVYIP 135

Query: 144 GCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ-PLRVKVDREARRL 202
           GCPP PA+ +YG  MALG+++QK+H +   +    P  +    +        +  E++RL
Sbjct: 136 GCPPHPASVIYGLGMALGIIDQKLHKKSYEDDSTLPPPVEKSVIGDILFERDLQAESKRL 195

Query: 203 AGYRYGRQIADDYLTQLGQGEEQVAR---------WLEAENDPRLNEIVSHLNHVV 249
             Y +GR + D Y++ +    +              ++ E DPR  E ++ L++ V
Sbjct: 196 MSYIFGRALFDKYMSAIKTASDVHDPNSARTAMLEAIKKEEDPRYAECMALLHNDV 251


>UniRef50_O75251 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=638 Tax=cellular organisms
           RepID=NDUS7_HUMAN
          Length = 213

 Score =  206 bits (525), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 2/173 (1%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           +    P+     P P +  E + +    L+   +RS  ++ +  G    C +E+    +P
Sbjct: 42  TQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMHMAAP 99

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +D +RFG+    SPR +D+++  G +T  M     + +   P+P+  +S G+C N GG 
Sbjct: 100 RYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGY 159

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           +H  Y V  G D+IVPVD+YIPGCPPT  A LYG       ++++   +    
Sbjct: 160 YHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYR 212


>UniRef50_Q9DC70 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=57 Tax=cellular organisms
           RepID=NDUS7_MOUSE
          Length = 224

 Score =  201 bits (512), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 2/159 (1%)

Query: 16  PMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS 75
           P +  E + +    L+   +RS  ++ +  G    C +E+    +P +D +RFG+    S
Sbjct: 67  PRSRAEYVVTKLDDLINWARRS-SLWPMTFG-LACCAVEMMHMAAPRYDMDRFGVVFRAS 124

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G +T  M     + +   P+P+  +S G+C N GG +H  Y V  G D+I
Sbjct: 125 PRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRI 184

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           VPVD+Y+PGCPPT  A LYG       ++++   +    
Sbjct: 185 VPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYR 223


>UniRef50_Q1AVI4 NADH-quinone oxidoreductase subunit B n=15 Tax=Bacteria
           RepID=NUOB_RUBXD
          Length = 251

 Score =  199 bits (507), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRH 78
           + +I +     L    R   ++ +  G    C IE+ +T     D ERFG      SPR 
Sbjct: 9   EPNIITTSTDKLFNWARKNSLWPLQFG-LACCAIEMMSTGMAHNDLERFGAGFFAGSPRQ 67

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           AD+++ +G V+  M     R ++  P+PK  I+ GAC  SGG F D Y V  G D+++PV
Sbjct: 68  ADVMIVSGTVSTKMAERMTRLYEQMPEPKWVIAMGACAISGGPFLDGYSVLMGADRVIPV 127

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIH-ARGPGELDEQPAE-ILHGDMVQPLRVKVD 196
           DVY+PGCPP P A ++G       +E++               E  +   + +    ++ 
Sbjct: 128 DVYVPGCPPRPEALIFGIMTLQKKIEREQQVGYEKPRPALVDEEGNIREYLPEREYRQIS 187

Query: 197 R-EARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRL 238
             +A R  G +   +        L  G      W+  E   RL
Sbjct: 188 EGKAHRPKGIKRLPRTYVFQRKGLPPGSMTDVGWIPPEARERL 230


>UniRef50_C6ANV6 Hydrogenase-4 component I n=6 Tax=Gammaproteobacteria
           RepID=C6ANV6_AGGAN
          Length = 258

 Score =  195 bits (495), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 156/251 (62%), Positives = 196/251 (78%), Gaps = 5/251 (1%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           N   P   NGI  P ++DE+IA MK +LLK I+RSAYVYRVDCGGCNGCEIEIF+T++P+
Sbjct: 2   NTQIPMPVNGISTPFSIDENIAKMKQALLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPV 61

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           FDAERFGIKVV SPRHADILLFTG+VTRAMR+PA+RA+Q+APDPKICI+YGACG  GGIF
Sbjct: 62  FDAERFGIKVVASPRHADILLFTGSVTRAMRTPAMRAYQAAPDPKICIAYGACGCGGGIF 121

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           HDLYCVWGG+D+IVPVDVYIPGCPPTPAAT+YGFAMALGLL+QK+  +         A++
Sbjct: 122 HDLYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLKGKQEKADPNAEAKL 181

Query: 183 LHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQV-----ARWLEAENDPR 237
               +   LR+ ++REARRLAGYR G  IA+ ++  + + ++         +LE E DPR
Sbjct: 182 RFPTIPLDLRISLEREARRLAGYRQGGNIANQFMAMMSEDDKVPFGVRLGEYLEREADPR 241

Query: 238 LNEIVSHLNHV 248
           L+EI++ L+ +
Sbjct: 242 LSEIINRLHAI 252


>UniRef50_O21272 NADH-ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Eukaryota
           RepID=NDUS7_RECAM
          Length = 182

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 2/145 (1%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHAD 80
           E I S    L+    R   ++ +  G    C +E+  + +  +D +RFGI   PSPR +D
Sbjct: 30  EFIVSKMDELV-NWARKGSLWPMTFG-LACCAVEMMHSAASRYDLDRFGIIFRPSPRQSD 87

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +++  G +T  M     + +    +P+  +S G+C N GG +H  Y V  G D+IVPVD+
Sbjct: 88  VMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDI 147

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQ 165
           Y+PGCPPT  A LYG       +++
Sbjct: 148 YVPGCPPTAEALLYGLLQLQKKIKR 172


>UniRef50_B6YT72 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=3
           Tax=cellular organisms RepID=B6YT72_THEON
          Length = 266

 Score =  188 bits (478), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 127/239 (53%), Gaps = 26/239 (10%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S +V+ VD G CNGC+IEI   L+P +DAER GIK+VPSPRHAD LL +G +TR     
Sbjct: 5   KSVWVFHVDSGSCNGCDIEILDVLTPYYDAERLGIKLVPSPRHADALLVSGPLTRQTYYA 64

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV-------------WGGTDKIV----- 136
              A+++  P P+I ++ G C +SGGIF++ Y +              GG + ++     
Sbjct: 65  VKAAYEAMPPKPRIVVAIGTCASSGGIFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGK 124

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD 196
             D+YIPGCPP+P   LYG A  LGL E+K+        + +   +    + + + + + 
Sbjct: 125 KPDMYIPGCPPSPEEILYGLAQLLGLKEKKMKGEYYYADEIEFV-LPERPIEERIYLTLR 183

Query: 197 REARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
              RR+ GY    ++ +D++  + + +E            RL+E+V       +++R++
Sbjct: 184 ESLRRVVGYFDREKVLEDFMALVEKAQESENP------RERLHELVIGYFLREKDSRVK 236


>UniRef50_C3XGH6 Ni/Fe-hydrogenase small subunit n=8 Tax=Proteobacteria
           RepID=C3XGH6_9HELI
          Length = 425

 Score =  187 bits (476), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 66/287 (22%), Gaps = 54/287 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD----- 64
           A  +   + +  + A + A   +   R   +  +    C GC   +  +  P  D     
Sbjct: 93  AAVVTASIGLPATFAPLTARAAELADRVP-IIWLHMAECTGCSESLLRSEDPCIDSIIFD 151

Query: 65  ---AERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSPA----------L 97
               E     +  S   A+              +++  G + +                 
Sbjct: 152 YVSMEYHETIMAASGYQAEKSLEDAVKKYDGRYVMMVEGGIPKDTEYFLTIGASGRTGAE 211

Query: 98  RAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV-PVDVYIPGCPPTPAATLY 154
                A       + G C + GG+               I+    + +PGCPP     + 
Sbjct: 212 ECRHVAKHAAAIFAIGTCSSFGGVQAAAPNPTNAHPLSDIIDKKVINVPGCPPNEKNIVG 271

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL---------AGY 205
                +  L   +               +H    +  R       +             Y
Sbjct: 272 TLMQHI--LFGDMALDAFHRPKWAYGHRIHDLCERRGRFDAGEFVQHFGDENAKNGYCLY 329

Query: 206 RYGRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHL 245
           + G +    +             W             P   + +S  
Sbjct: 330 KVGCKGPYTFNNCSKLRFNSHTNWPIGAGHGCIGCSEPHFWDTMSPF 376


>UniRef50_A3DKH2 NADH-quinone oxidoreductase, B subunit n=5 Tax=cellular organisms
           RepID=A3DKH2_STAMF
          Length = 165

 Score =  182 bits (461), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/137 (49%), Positives = 91/137 (66%)

Query: 28  ASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGA 87
            S  K I+ + ++   + G CNGC+IE+ A ++PL+D ERFGIK+ PS RHADIL+ TGA
Sbjct: 21  DSKYKIIRYTPWLIHFNTGACNGCDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTGA 80

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 147
           VT+       R ++  PDPK  ++ GAC  SGG+FH+ Y V  GTDK++PVD+Y+PGCPP
Sbjct: 81  VTKKAAERLKRLYEQMPDPKFVVAVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCPP 140

Query: 148 TPAATLYGFAMALGLLE 164
            P A L G    L  LE
Sbjct: 141 RPEAILDGIVKLLKRLE 157


>UniRef50_B5YKI3 NADH-quinone oxidoreductase subunit B 1 n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=NUOB1_THEYD
          Length = 199

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 14/201 (6%)

Query: 10  ANGIPVPMTVDESI--------ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
            + +  P+ +++ I               +    R + ++ +  G    C IE+ AT + 
Sbjct: 5   VDTVTEPVEIEQGIKIVPAANTIITTLDKIASWGRCSSLWPLTFG-LACCAIEMMATAAS 63

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +D +RFGI +  +PR AD+++  G VT+ M    +  +   P+P+  I+ G+C  SGGI
Sbjct: 64  HYDLDRFGIIMRATPRQADVMIIAGTVTKKMAPVIVNLYHQMPEPRYVIAMGSCACSGGI 123

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE 181
           F + Y    G D+I+PVDVYIPGCPP P A + G       ++ + H +           
Sbjct: 124 F-NTYSTVQGVDEILPVDVYIPGCPPRPEALIEGLLKLQEKIKTEPHKKTGC----LSGV 178

Query: 182 ILHGDMVQPLRVKVDREARRL 202
            L     +    +  R+ ++ 
Sbjct: 179 CLIDKSQRRCSYESCRDNKKD 199


>UniRef50_Q0BSK3 NADH-quinone oxidoreductase subunit B n=31 Tax=cellular organisms
           RepID=NUOB_GRABC
          Length = 194

 Score =  180 bits (458), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP 76
              D+         L    R+  ++ +  G    C +E+     P +D +RFG+    SP
Sbjct: 40  EMADKGFVVANLDKLVNWARTGSLWPMTFG-LACCAVEMIHAYMPRYDLDRFGVIPRASP 98

Query: 77  RHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV 136
           R +D+++  G +T  M     R +   P+P+  IS G+C N GG +H  Y V  G D+IV
Sbjct: 99  RQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 158

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           PVDVY+PGCPPT  A +YG       + +
Sbjct: 159 PVDVYVPGCPPTAEALVYGIMQLQKKIRR 187


>UniRef50_B0TH78 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_HELMI
          Length = 175

 Score =  180 bits (457), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 2/151 (1%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VV 73
           V   + ++I       +    R   ++ +   G   C IE+ AT +  FD  RFG +   
Sbjct: 15  VDELIKKNIIMTSLEAVFNWARGNSLWPLS-SGLACCAIEMMATGASRFDMARFGYEVFR 73

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
           PSPR AD+++  G +T  M     R ++  P+PK  I+ G+C  +GG F D Y V  G D
Sbjct: 74  PSPRQADLIIIAGTLTWKMAPAIQRVYEQMPEPKWIIAMGSCACTGGPFADSYAVVPGVD 133

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           K++PVDVY+PGCPP P A L GF      ++
Sbjct: 134 KVIPVDVYVPGCPPRPEALLDGFLKLKAKIQ 164


>UniRef50_A6L170 NADH-quinone oxidoreductase subunit B n=35 Tax=Bacteroidales
           RepID=NUOB_BACV8
          Length = 198

 Score =  178 bits (452), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 74/152 (48%), Gaps = 2/152 (1%)

Query: 29  SLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRHADILLFTGA 87
             L    RS  ++ +     + C IE  A  +  +D  RFG +V   SPR AD+++  G 
Sbjct: 42  DDLINWGRSNSLWPLTFA-TSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIMVAGT 100

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 147
           +T  M     R +    DPK  I+ G C  SGG F   Y V  G DKI+PVDVYIPGCPP
Sbjct: 101 ITHKMAPVLKRLYDQMADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIPGCPP 160

Query: 148 TPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
            P A LYG       ++ +    G    + +P
Sbjct: 161 RPEALLYGMIQLQRKVKLEKFFGGVNRKENEP 192


>UniRef50_D2R6Y4 NADH-quinone oxidoreductase, B subunit n=1 Tax=Pirellula staleyi
           DSM 6068 RepID=D2R6Y4_9PLAN
          Length = 227

 Score =  178 bits (452), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 81/178 (45%), Gaps = 5/178 (2%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPR 77
           V+E++ +          R + ++ +  G    C IE+ A  +  +D +RFG      +PR
Sbjct: 30  VEENVFTTSVEQAINWARQSSIWPMTFG-LACCAIEMMAAGASRYDMDRFGAGAFRATPR 88

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-FHDLYCVWGGTDKIV 136
            AD+++  G VT  M S   R +   PDPK  I+ GAC   GG  F   Y V  G D +V
Sbjct: 89  QADLMIVAGTVTYKMASRVRRLYNMMPDPKFVIAMGACTVGGGPYFKWGYHVVKGVDLVV 148

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKI--HARGPGELDEQPAEILHGDMVQPLR 192
           PVDVYIPGCPP P A L G       ++       +  G       E +  ++  P  
Sbjct: 149 PVDVYIPGCPPRPEALLEGLMRIQDKIKGHRIAKKKSTGSGFLTVGEKVEDELPIPHH 206


>UniRef50_C5GDP9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Ajellomyces
           dermatitidis RepID=C5GDP9_AJEDR
          Length = 245

 Score =  178 bits (451), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASM-----KASLLKKIKRSAYVYRVDCGGCNGCEIEIF 56
           S L   R      +  + DE   +M         +    R A ++ +  G    C +E+ 
Sbjct: 67  STLGVARMERSSSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLG-LACCGLEMM 125

Query: 57  ATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACG 116
           A   P +D +R G     SPR +D+L+  G VT  M       +   PDPK  IS G+C 
Sbjct: 126 AVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCA 185

Query: 117 NSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
           N GG +H  Y V  G D+++PVDVY+PGCPPT  A +Y  ++    L
Sbjct: 186 NGGGYYHYSYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKL 232


>UniRef50_A5UXK1 NADH-quinone oxidoreductase subunit B 1 n=13 Tax=Bacteria
           RepID=NUOB1_ROSS1
          Length = 268

 Score =  177 bits (449), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 7/169 (4%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAVTRA 91
              R + ++ +  G    C IE+ AT    FD  RFG +    SPR AD+++  G VT+ 
Sbjct: 26  NWGRRSSIWPLSFG-LACCAIEMMATGLARFDLARFGAEMFRASPRQADLMIVAGTVTKK 84

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M    +R +   P+P+  IS GAC  SGG F D Y V  G D ++PVDVYIPGCPP P A
Sbjct: 85  MAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEA 144

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
            L+        ++ +   +          +    +   P   K   E  
Sbjct: 145 LLHALMTLQKQIDAQRLNQ-----VRWYGKREAKEYPVPTFGKHGLEID 188


>UniRef50_Q3ABV6 [Ni/Fe] hydrogenase, small subunit n=3 Tax=Clostridia
           RepID=Q3ABV6_CARHZ
          Length = 354

 Score =  177 bits (449), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 71/273 (26%), Gaps = 45/273 (16%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-----L 62
           + A+     + + +S+  +  +L    K    V  +    C GC + +  ++ P     L
Sbjct: 11  KFASFTAATLGLSQSVPEVAYALENAAKGQPPVIWIQGASCTGCSVSLLNSVHPDIKEIL 70

Query: 63  FDAERFGIKVVPSPRHADI-----------------LLFTGAVTRAMRSPA--------- 96
            +          S     +                 L+  GAV                 
Sbjct: 71  LEIINLKFHPNISAATGHVAVEAFLGEAEKNKGKFFLVVEGAVPTKDNGVYCSIGEKDGR 130

Query: 97  -----LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPV--DVYIPGCPP 147
                    +     K  I+ G C   GGI        G     +++     + IPGCPP
Sbjct: 131 ELYFSEVVKELGEKAKAVIAIGTCAAFGGIPAADPNPTGCVPVTEVIDPKKVLNIPGCPP 190

Query: 148 TPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL----A 203
            P   +   A  L L  +       G        I+H +  +         A+       
Sbjct: 191 HPDWFVGSLAHVL-LYNELPKTDKFGRPKMFYEGIIHDNCPRRQYFDNSIFAKDFSEPGC 249

Query: 204 GYRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
               G +    +     +       W      P
Sbjct: 250 LLLLGCKGPVTHSDCPTRLWNGGVNWCIKAGHP 282


>UniRef50_B6YU96 Membrane bound hydrogenase, NiFe-hydrogenase small subunit n=13
           Tax=cellular organisms RepID=B6YU96_THEON
          Length = 175

 Score =  176 bits (447), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 72/174 (41%), Positives = 99/174 (56%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           ++  P D N      +  E +    A L + I RS +V+ V+ G CNGC+IEI A L+P 
Sbjct: 2   SIKVPADQNRTNGTTSEREMLEKRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPR 61

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +DAERFG+K+V SPRHAD+LL TG VT          ++  PDPKI I+ G+C   G +F
Sbjct: 62  YDAERFGVKLVGSPRHADVLLVTGPVTDQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVF 121

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
           ++          I+PVDVY+PGCPP P A LYG  +AL  L + +    P   +
Sbjct: 122 YESPFTNAPLSNIIPVDVYVPGCPPRPEAILYGVVLALEKLAKILKGEVPEGEE 175


>UniRef50_B6IT61 Hydrogenase-4 component I n=4 Tax=Bacteria RepID=B6IT61_RHOCS
          Length = 196

 Score =  176 bits (447), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 72/181 (39%), Positives = 95/181 (52%), Gaps = 2/181 (1%)

Query: 4   LLGPRDAN-GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           L GPR      P   TV+     +  +  +++ RS  + +VD G CN CE+EI A  +P+
Sbjct: 10  LKGPRTIAGPAPADATVEALARRLDTASRRRLGRSLAIRQVDAGSCNACEMEIHALNNPV 69

Query: 63  FDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           +D ERFG   V SPRHAD+LL TG VT  MR   L+ W++ PDPK  ++ G C   GG F
Sbjct: 70  YDLERFGFSFVASPRHADVLLVTGPVTTNMREALLKTWEATPDPKWVVALGQCAIDGGPF 129

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI-HARGPGELDEQPAE 181
            D Y V GG +K+VPVD+ IPGCPP P   L      +    +        G     P E
Sbjct: 130 ADSYAVVGGVEKVVPVDLMIPGCPPRPVDILAALVALIEAEARPPSRPAASGTPAGAPRE 189

Query: 182 I 182
            
Sbjct: 190 R 190


>UniRef50_A6LXQ4 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_CLOB8
          Length = 169

 Score =  176 bits (447), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 5/159 (3%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPS 75
             ++++I   K        R+   + +  G    C IE+ A     +D  RFG +    S
Sbjct: 13  EQIEKNIILTKLDDTLNYFRAHSFWPLTFG-LACCAIEMMAAGGARYDIARFGYEVFRAS 71

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G +T  M     + +   P+PK  I+ G+C  SGG F D Y V  G D  
Sbjct: 72  PRQADLMIVAGTITEKMAPIVKKIYDQMPEPKWVIAMGSCATSGGPFVDSYNVVPGADTF 131

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           +PVDVYIPGCPP P A ++G       +   IH +  G 
Sbjct: 132 LPVDVYIPGCPPRPEALIHGLLTLKEKI---IHPKEVGR 167


>UniRef50_Q8DKZ4 NAD(P)H-quinone oxidoreductase subunit K n=21 Tax=cellular
           organisms RepID=NDHK_THEEB
          Length = 237

 Score =  176 bits (446), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 5/170 (2%)

Query: 1   MSNLLGPRDANGIPVPM---TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFA 57
           M+N   P   N I  P     + E+I     + +    R + ++ +  G    C IE  A
Sbjct: 1   MTNTTSPAILNPIARPEVPQELAENIILTSLNDVYDWARLSSLWPLMYG-TACCFIEFAA 59

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            +   FD +RFG+    SPR AD+++ +G +T  M    +R ++  P PK  I+ GAC  
Sbjct: 60  MIGSRFDFDRFGLVPRNSPRQADLIITSGTITMKMAPALVRLYEQMPSPKYVIAMGACTI 119

Query: 118 SGGIF-HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
           +GG+F  D Y    G DK++PVDVY+PGCPP P A +         +  +
Sbjct: 120 TGGMFSSDSYSAVRGVDKLIPVDVYLPGCPPRPEAIMDAIVKLRKKIANE 169


>UniRef50_B8HLE8 NAD(P)H-quinone oxidoreductase subunit K 2 n=94 Tax=cellular
           organisms RepID=NDHK2_CYAP4
          Length = 259

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 1   MSNLLGPR---DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFA 57
           MS  L        +   VP  + E+I       +    R + +Y +  G    C IE  A
Sbjct: 1   MSTPLDHSIRNPISSAEVPPELSENIILTSLDDIYNWARISSIYPLMYG-TACCFIEFAA 59

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            ++  FD ERFG+    SPR AD+++  G +T  M  P  R +   P+PK  I+ GAC  
Sbjct: 60  MIASRFDMERFGMFPRASPRQADLIILAGTLTMQMAVPTRRLYDQMPEPKYVIAMGACMI 119

Query: 118 SGGIF-HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
           +GG+F  D      G DK++P+DVYIPGCPP P A L         +  +       
Sbjct: 120 TGGMFSADSPTALRGADKLLPIDVYIPGCPPRPEAILDAVTKLRKKIANESPQERQN 176


>UniRef50_Q1IPE7 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_ACIBL
          Length = 213

 Score =  174 bits (442), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 3/157 (1%)

Query: 12  GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK 71
                   +E I            R   ++ +  G    C IE+ +  +  FD  RFG +
Sbjct: 45  RATFGEQPEEGIVLTTLDNAVNWIRKNSIWPMTFG-LACCAIEMMSMGASRFDIARFGAE 103

Query: 72  -VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
              PSPR +D+++  G V++ M       +   P+PK  IS GAC  SGG+F + Y +  
Sbjct: 104 VFRPSPRQSDLMIIAGRVSQKMAPVIRHLYLQMPEPKWVISMGACATSGGVF-NNYALVQ 162

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
           G ++ +PVD+Y+PGCPP P   +Y   +    ++ + 
Sbjct: 163 GVNQYIPVDIYVPGCPPRPEQLIYAITLLQEKIQAER 199


>UniRef50_B3QY47 NADH-quinone oxidoreductase subunit B 2 n=8 Tax=Bacteria
           RepID=NUOB2_CHLT3
          Length = 195

 Score =  174 bits (441), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADI 81
            +    A  +    R + ++ +  G    C IE+ AT +  +D ERFGI    SPR +D+
Sbjct: 12  GVVITAAENVLNWARLSSLWPMGFG-LACCAIEMMATNASNYDLERFGIFPRSSPRQSDL 70

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD-LYCVWGGTDKIVPVDV 140
           ++  G VT  M    +R ++  P+P+  +S G+C N GG + +  Y V  G D+I+PVDV
Sbjct: 71  MIVAGTVTFKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVVKGVDRIIPVDV 130

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKI-HARGPGELDEQPAEIL 183
           Y+PGCPP P A + G      L+ ++         ++    + +
Sbjct: 131 YVPGCPPRPEALIGGLMKVQELIREEKFAGDRREAIERLKPKKV 174


>UniRef50_C7NUN9 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NUN9_HALUD
          Length = 183

 Score =  174 bits (441), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/143 (39%), Positives = 83/143 (58%)

Query: 30  LLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVT 89
           +     RS ++  ++CG CNGC+IE    L P +D ERFGI+   +PRHAD+L+ TG VT
Sbjct: 5   IDWARNRSPWILHMNCGSCNGCDIETLDALMPRYDVERFGIQQKDTPRHADVLVATGPVT 64

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
           + M     R ++  P+PK+ I+ G+C  +GG+F D Y    G D ++PVD+Y+PGCP +P
Sbjct: 65  KQMAPRLERIYEQMPEPKLVIAAGSCAATGGVFQDCYNCHEGIDDVIPVDMYVPGCPISP 124

Query: 150 AATLYGFAMALGLLEQKIHARGP 172
              + G    L    Q+  A   
Sbjct: 125 ETLIDGIVALLEEAGQEAKAERL 147


>UniRef50_B6YR59 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteroidales
           RepID=NUOB_AZOPC
          Length = 191

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV-VPSPRH 78
             +IA  K + L    RS  V+ +     + C IE     +  +D  RFG +V   SPR 
Sbjct: 23  GANIAIAKLNDLINWGRSNSVWPLTFA-TSCCGIEFMCLGAARYDFARFGWEVTRNSPRQ 81

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           AD++   G +   M     R +    +PK  I+ G+C  SGG F   Y    G DKI+PV
Sbjct: 82  ADVVFCCGTIVHKMAPVLKRLYDQMSEPKYVIALGSCAISGGPFKSSYHTIMGIDKIIPV 141

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLE 164
           DVYIPGCPP P A +YG       ++
Sbjct: 142 DVYIPGCPPRPDAMIYGMIQLARKIK 167


>UniRef50_A5TDF9 NADH-quinone oxidoreductase, B subunit n=2 Tax=pseudomallei group
           RepID=A5TDF9_BURMA
          Length = 293

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 2/166 (1%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           ++    P      P+ +  D  I +   + +    +   ++ +  G    C +E+     
Sbjct: 118 VTGSSTPFGMANHPLTLEKDGFIVTTLDAAM-AAAQKNSLWYMTFG-LACCAVEMMHAAG 175

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
             +D +RFG+    SPR  D+++  G +T  M     R +    +P+  +S G+C N GG
Sbjct: 176 ARYDMDRFGMIPRASPRQCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGG 235

Query: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
            +H  Y V  G D+IVPVDVY+PGCPPT  A +YG       + ++
Sbjct: 236 YYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLMQLQRKVAER 281


>UniRef50_C1A8Z3 NADH-quinone oxidoreductase chain B n=1 Tax=Gemmatimonas aurantiaca
           T-27 RepID=C1A8Z3_GEMAT
          Length = 212

 Score =  174 bits (440), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 3/189 (1%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG 69
           +    V     +   + +   L    R+  ++ +  G    C IE  AT +  FD  RFG
Sbjct: 13  SAITHVDAGGHDGWITTRLDFLVNWGRAGSLWPMPFG-TACCAIEFMATAASRFDLSRFG 71

Query: 70  IK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           ++ +  SPR AD+LL  G V   +     R +Q  P PK  IS GAC ++GG+F D Y V
Sbjct: 72  MERLSYSPRQADVLLCAGRVPLKLAPVLRRIYQQMPQPKWVISMGACASTGGMF-DNYAV 130

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMV 188
             G D I+PVDVY+PGCPP P A ++   M    + Q+        ++  P       + 
Sbjct: 131 VQGIDTIIPVDVYVPGCPPRPEALMHAIIMLQKKVMQERLKDSTRHVEIDPDPTSQLYIP 190

Query: 189 QPLRVKVDR 197
                ++  
Sbjct: 191 PSRIDELSE 199


>UniRef50_B0TDW1 Uptake [ni/fe] hydrogenase small subunit n=11 Tax=Bacteria
           RepID=B0TDW1_HELMI
          Length = 395

 Score =  173 bits (438), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 72/273 (26%), Gaps = 46/273 (16%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP------ 61
           +    +   + ++   A   A  L+  KR   V   +   C  C      T  P      
Sbjct: 47  KFCTVMAASLGLEPGAAGAIAEALET-KRRMPVIWRNFQECTCCTESFIRTQHPKASDII 105

Query: 62  --LFDAERFGIKVVPSPRHAD--------------ILLFTGAVTRAM---------RSPA 96
             +   +     +V +   A+              IL   GA+             R+  
Sbjct: 106 MTMISLDYHETLMVAAGHQAEEAVAKAIEDNRGNYILAVEGAIPVKDGGIYCCIAGRTAV 165

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVP--VDVYIPGCPPTPAAT 152
               + A   K  I++G+C  +G +        G      I+     + +PGCP      
Sbjct: 166 DMLKEEAKHAKAIIAWGSCAVNGCVQAANPNPTGAVPVQDIIKDKPIINVPGCPAIAEVM 225

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK--------VDREARR-LA 203
                  L   E+       G         +H    +              D+ A+    
Sbjct: 226 AGVITHVLT-FERLPELDSQGRPKAFYGHRIHDKCNRRAYFDAGMFVENFDDQGAKEGWC 284

Query: 204 GYRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
            Y+ G +  + Y +           +      P
Sbjct: 285 LYKLGCKGPNTYNSCSNLEWNGGLSYPIKSGHP 317


>UniRef50_B4U8H3 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_HYDS0
          Length = 177

 Score =  172 bits (437), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 74/163 (45%), Gaps = 2/163 (1%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA 79
                +     L    R   ++ V  G    C IE+    +  FD +R G+    SPR A
Sbjct: 7   GNGFITTTVDELLSWGRRNALWPVTIG-LACCAIEMMHAAASRFDIDRLGMIFRASPRQA 65

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+L+  G V   +       W   P+PK CIS G C ++GG F   Y    G D+I+PVD
Sbjct: 66  DVLIVAGTVVNKVAPMLKLVWDQMPEPKWCISMGGCASAGGPFP-TYSTLQGIDRIIPVD 124

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           VYIPGCPPTP   +YG       + +K   R     +E   ++
Sbjct: 125 VYIPGCPPTPQGLIYGLLELQRKIREKKVTRYEKAFEEFKKDL 167


>UniRef50_Q1IL91 NADH-quinone oxidoreductase subunit B 2 n=4 Tax=Bacteria
           RepID=NUOB2_ACIBL
          Length = 202

 Score =  172 bits (437), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRH 78
           +++        +    R + V+ +  G    C IE+    +  +D  RFG +   PSPR 
Sbjct: 9   EKNFLLSSVDYVFNWARKSSVWPMTFG-LACCAIEMITASTARYDIARFGSEVFRPSPRQ 67

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           +D+++  G VT  M     R ++  P+PK  ++ GAC + GG F + Y    G DKIVPV
Sbjct: 68  SDLMIVAGTVTLKMAPVVQRIYEQMPEPKWVMAMGACASVGGPF-NTYATLQGVDKIVPV 126

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV 195
           DVY+ GCPP P    YG       ++    A+ P ++     E +  +  + +R+  
Sbjct: 127 DVYVVGCPPRPENLFYGLLKLQDKIDHMTLAKRPTDVRL--DETMLDEFRKSVRIAQ 181


>UniRef50_A9G9S9 NADH-quinone oxidoreductase subunit B 2 n=2 Tax=Myxococcales
           RepID=NUOB2_SORC5
          Length = 182

 Score =  172 bits (437), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 56/174 (32%), Positives = 78/174 (44%), Gaps = 4/174 (2%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKK---IKRSAYVYRVDCGGCNGCEIEIFATL 59
           NL+ P               I +     +       RS  V+ +  G    C IE+  T 
Sbjct: 6   NLMAPPRGWEAKYESDGGGVITTSVDQTVNWLLNWGRSNSVWYMLFG-LACCAIELMQTG 64

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
            P  D ERFG    PSPR +D+ +  G +T  M +   R +    +P+  IS G+C N G
Sbjct: 65  GPRGDLERFGAAPRPSPRSSDLFIIAGTLTYKMATRVKRLYDQMSEPRFVISMGSCSNCG 124

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
           G+F   Y V  G D+I+PVDVY+PGCPP P A L G       ++ +      G
Sbjct: 125 GLFQYAYSVCKGVDQIIPVDVYVPGCPPRPEALLEGLLKIQEKIKSERALGRRG 178


>UniRef50_B2A054 NADH ubiquinone oxidoreductase 20 kDa subunit n=54 Tax=cellular
           organisms RepID=B2A054_OPITP
          Length = 338

 Score =  172 bits (435), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/136 (42%), Positives = 85/136 (62%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +  +++S ++   D   CNGC+IE  A L+PL+D ER G+    +P+HADI L TGAV  
Sbjct: 1   MLGLRKSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVINTGNPKHADIFLVTGAVNE 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
             +      +   P+PK+ ++ G C +SGGIF D Y + GG D+++PVDVY+PGC   P 
Sbjct: 61  QSKEVIRNIYHQLPEPKVVVAIGVCASSGGIFRDCYNIAGGVDRVIPVDVYVPGCAARPE 120

Query: 151 ATLYGFAMALGLLEQK 166
           A + G   ALG+LE+K
Sbjct: 121 AIIDGVVQALGVLERK 136


>UniRef50_P13061 Periplasmic [NiFe] hydrogenase small subunit n=63
           Tax=Proteobacteria RepID=PHNS_DESDA
          Length = 315

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 67/288 (23%), Gaps = 55/288 (19%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD-------- 64
             V + +    A           R   V  +    C GC   +  T  P  D        
Sbjct: 31  TAVAVAMGMGPAFATDVAAALTGRRPSVVYLHAAECTGCSEALLRTYQPFIDTLILDTIS 90

Query: 65  AERFGIKVVP-------------SPRHADILLFTGAVTRAM---------RSPALRAWQS 102
            +     +               +     I L  GA+   M          +        
Sbjct: 91  LDYHETIMAAAGEAAEEALQAAVNGPDGFICLVEGAIPTGMDNKYGYIAGHTMYDICKNI 150

Query: 103 APDPKICISYGACGNSGGIFHDLYCVW--GGTDKIVPV----DVYIPGCPPTPAATLYGF 156
            P  K  +S G C   GGI           G +          + +PGCPP P   +   
Sbjct: 151 LPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKAINVPGCPPNPLNMVGTL 210

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA---------RRLAGYRY 207
              L    QKI     G       + +H    +         A         +    Y  
Sbjct: 211 VAFLKG--QKIELDEVGRPVMFFGQSVHDLCERRKHFDAGEFAPSFNSEEARKGWCLYDV 268

Query: 208 GRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHV 248
           G +  + Y     +       W  A          P   + ++     
Sbjct: 269 GCKGPETY-NNCPKVLFNETNWPVAAGHPCIGCSEPNFWDDMTPFYQN 315


>UniRef50_Q0W2C0 Hydrogenase, small subunit-like protein (HycG-like) n=1
           Tax=uncultured methanogenic archaeon RC-I
           RepID=Q0W2C0_UNCMA
          Length = 247

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 98/159 (61%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG 69
           A+       V+ S   ++  + K   RS  +  VD G CNGCE+E+ +  + ++D ERFG
Sbjct: 89  ASKAKPDFDVESSGRELEKKIKKAFGRSLAIREVDAGSCNGCEVEVNSLSNAIYDIERFG 148

Query: 70  IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
           + +V SPRHAD LL TG VTR M    ++++ + PDPK+ I+ GAC  +GGIF D Y V+
Sbjct: 149 LHIVASPRHADALLVTGPVTRNMERGLMQSYNATPDPKMVIAMGACAITGGIFRDSYAVY 208

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
            G D +VPVDVYIPGCPP P A + G  +A+   E+K  
Sbjct: 209 NGVDALVPVDVYIPGCPPRPQAIIQGIMLAIDRWEEKRK 247


>UniRef50_B1W4V9 NADH-quinone oxidoreductase subunit B 2 n=27 Tax=Bacteria
           RepID=NUOB2_STRGG
          Length = 235

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 4/169 (2%)

Query: 7   PRDANGIPVPMTVD--ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           P D   +P P  +     +A     ++    R   ++  + G    C IE  A      D
Sbjct: 19  PADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFNFG-LACCAIEFIAASMARHD 77

Query: 65  AERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH 123
             R G+    P PR AD+++ +G VT  M     R ++  P+PK  IS+GAC N GG + 
Sbjct: 78  FIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNCGGPYW 137

Query: 124 DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           D Y V  G D+I+PVDVY+PGCPP P A L G       + ++  A   
Sbjct: 138 DSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARESLAERY 186


>UniRef50_B2IID4 NADH ubiquinone oxidoreductase 20 kDa subunit n=9 Tax=Bacteria
           RepID=B2IID4_BEII9
          Length = 177

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/164 (37%), Positives = 84/164 (51%), Gaps = 1/164 (0%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF 63
           L  P      P    +    A +      ++ RS  +  VD G CNGCE+EI A  +  +
Sbjct: 9   LAKPPLTEAGPTDGEIAALAAELDHLARSRLGRSLAIREVDAGSCNGCELEINALGNAFY 68

Query: 64  DAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH 123
           D ERFG++ V SPRHAD+LL TG VT  MR   LR + + P+PK  ++ G C    G+F 
Sbjct: 69  DLERFGLRFVASPRHADVLLVTGPVTHNMREALLRTYDATPNPKWVVAAGTCALGEGVFA 128

Query: 124 DLYCV-WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
           + Y    GG   ++ VD+YIPGCPPTP   L G    +      
Sbjct: 129 ESYACQKGGVSAVIAVDLYIPGCPPTPTDLLKGLLALITKNTGP 172


>UniRef50_C7PSH0 NADH-quinone oxidoreductase, B subunit n=4 Tax=Sphingobacteriales
           RepID=C7PSH0_CHIPD
          Length = 187

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 3/167 (1%)

Query: 6   GPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA 65
             +  +         E   +     +  + R   ++ +     + C IE  AT++  +D 
Sbjct: 8   NEKVKSVAVPEGYSGEGFFATTFDQVIGLARKNSIWPLPFA-TSCCGIEFMATMASTYDM 66

Query: 66  ERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD 124
            RFG + +  +PR  D+L+  G +++ M     + +    +P+  ++ GAC +SGG+F D
Sbjct: 67  SRFGSERMAFTPRQCDLLMVMGTISKKMAPVLRQVYLQMAEPRWVVAVGACASSGGVF-D 125

Query: 125 LYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
            Y V  G D+++PVDVY+PGCPP P A + GF     L+ Q+   R 
Sbjct: 126 TYSVLQGIDQVIPVDVYVPGCPPRPEAIIDGFMRVQDLVGQESLRRR 172


>UniRef50_C7IG01 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IG01_9CLOT
          Length = 266

 Score =  170 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/139 (48%), Positives = 84/139 (60%)

Query: 25  SMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
            +   + KK  RS  +  VD G CNGC+ EI A   P  D ERFGI  V SPRHAD+LL 
Sbjct: 128 KLNEKVAKKFGRSLNIREVDAGSCNGCDYEIQALNGPYNDIERFGIHFVASPRHADMLLV 187

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
           TG V+R M    ++ + + P PK+ ++ GAC  SGG+F D Y    G D I+PVDVYIPG
Sbjct: 188 TGCVSRNMEEALVKTYNATPSPKLVVAAGACACSGGLFKDSYAGRNGIDTILPVDVYIPG 247

Query: 145 CPPTPAATLYGFAMALGLL 163
           CPP P A +YG    +G L
Sbjct: 248 CPPRPQALIYGILKGIGRL 266


>UniRef50_B9L8U0 Hydrogenase-4 component I n=2 Tax=Epsilonproteobacteria
           RepID=B9L8U0_NAUPA
          Length = 164

 Score =  170 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/145 (42%), Positives = 86/145 (59%)

Query: 30  LLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVT 89
             K  K+S ++   + GGCNGC+IEI A L+P +D ERFG+    +P+ +DILL TG VT
Sbjct: 4   FTKFRKKSPWILHYNTGGCNGCDIEILAALAPKYDIERFGMLNRGNPKQSDILLVTGPVT 63

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
           +  R    R +   P+PK+ ++ GAC + GGIF D Y V  G D I+PVDV+IPGC P  
Sbjct: 64  KRCRDVLRRLYLEMPEPKVVVAMGACAHGGGIFRDFYHVENGVDNIIPVDVWIPGCAPRV 123

Query: 150 AATLYGFAMALGLLEQKIHARGPGE 174
            A + G   A+ + E+K   +    
Sbjct: 124 EAVIDGMVEAVKIWEKKTKEKEFMR 148


>UniRef50_Q06173 Periplasmic [NiFe] hydrogenase small subunit 1 n=17 Tax=Bacteria
           RepID=PHNS1_DESVH
          Length = 317

 Score =  170 bits (431), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 68/275 (24%), Gaps = 50/275 (18%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD--- 64
           +    I V M +  + A   A  L    R   V  +    C GC   +     P  D   
Sbjct: 28  KFCTAIAVTMGMGPAFAPEVARALTG-SRRPSVVYLHNAECTGCSESVLRAFQPYLDELI 86

Query: 65  -----AERFGIKV--------------VPSPRHADILLFTGAVTRAM---------RSPA 96
                 +     +              V +P    I +  GA+  A           +  
Sbjct: 87  LDTISLDYHETIMAAAGDAAEAALHQAVANPDGF-ICIVEGAIPTADNGIYGKVANHTML 145

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPV----DVYIPGCPPTPA 150
                  P  K  I+YG C   GG+        G  G +  +       + + GCPP P 
Sbjct: 146 SICSDIVPKAKAVIAYGTCATFGGVQAAKPNPTGAKGLNDALKHLGVNAINLAGCPPNPY 205

Query: 151 ATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA---------RR 201
             +      L                    + +H +  +         A         + 
Sbjct: 206 NLVGTLVYYL-KNNAAPEMDEFNRPLMFFGQSVHDNCPRLKHFDAGEFAPSFESEEARKG 264

Query: 202 LAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
              Y  G +     +    + +     W      P
Sbjct: 265 WCLYELGCKGPST-MNNCPKIKFNQTNWPVEAGHP 298


>UniRef50_C1DUF2 Quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound
           hydrogenase small subunit)
           (Hydrogen:quinoneoxidoreductase) n=3 Tax=Bacteria
           RepID=C1DUF2_SULAA
          Length = 416

 Score =  170 bits (431), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 72/286 (25%), Gaps = 54/286 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD----- 64
            + +   + +  S   + A   + + R   V  ++   C+G    +  + +P  D     
Sbjct: 74  VSMMTATLMLPPSFEPLVAQAAEVMNRVP-VIWINIQDCDGNTEALIRSSAPTVDELILD 132

Query: 65  ---AERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSP----------AL 97
               E     +  +   A+              +L   G++   M               
Sbjct: 133 YLSIEYQETLMAAAGDQAEKCLEDAVKTFKGQYLLFVEGSIPVKMEYAFTTGRHPETGVQ 192

Query: 98  RAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVP--VDVYIPGCPPTPAATL 153
           R  + A D K  I+ GAC + GG+        G  G   +V     V IP CP  P   +
Sbjct: 193 RVRRLAKDAKAVIAVGACASFGGVPAAYPNPTGAVGVMDVVSGVPVVNIPACPANPVNIV 252

Query: 154 YGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL---------AG 204
                 + L                    +H +  +                        
Sbjct: 253 GVIMHYV-LTGSLPELDSLKRPKFAFGYRIHDNCERRAHFDAGEFVEEWGDEGAKNNFCL 311

Query: 205 YRYGRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVS 243
           Y+ G +    +             W             P   +  +
Sbjct: 312 YKMGCKGPFTFNNCSIVRYNDGTNWPIGVGRGCIGCSEPDFWDKYA 357


>UniRef50_C0QEJ1 HynB n=4 Tax=Deltaproteobacteria RepID=C0QEJ1_DESAH
          Length = 330

 Score =  170 bits (431), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 69/290 (23%), Gaps = 52/290 (17%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS------P 61
                + +  +    +AS              V  +  G C GC      T +       
Sbjct: 45  VMTASMGLSASCVGQVASSIEKAAS--GTRPSVVWLHFGECTGCSEAFLRTPNVGAIILE 102

Query: 62  LFDAERFGIKVVPSPRHAD--------------ILLFTGAVTR---------AMRSPALR 98
               E     +  S   A+              I +  G++             R+    
Sbjct: 103 TISVEYHETIMAASGHQAEKSLEQAIKTHKGKFICVVEGSIATAYNGAYGKVGGRTFLEI 162

Query: 99  AWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPVD-VYIPGCPPTPAATLYG 155
           A    P   + I+ G C   GGI        G  G    + V  + I GCPP P   L  
Sbjct: 163 ANDVIPKAAVTIALGTCAAYGGIPSAAPNPGGYKGVKDAIGVATINISGCPPNPLNLLST 222

Query: 156 FAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL---------AGYR 206
               L    + I     G      AE +H    +    + D                 Y 
Sbjct: 223 IVKYLNK--ETIELDELGRPLFAYAETVHDRCPRLKHFENDEFVEEFGSKEAELGYCLYH 280

Query: 207 YGRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHVV 249
            G +  + Y             +             P   + ++      
Sbjct: 281 MGCKGPETYNNCPTAKFNDGTSFPIQAGHPCIGCSEPDFWDTMTPFYEEY 330


>UniRef50_C1ZCK3 NADH dehydrogenase subunit B n=1 Tax=Planctomyces limnophilus DSM
           3776 RepID=C1ZCK3_PLALI
          Length = 225

 Score =  170 bits (430), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 77/169 (45%), Gaps = 4/169 (2%)

Query: 6   GPRDANGIPVPMTV-DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
            P  + G P      +E++            + + V+ +  G    C +E+ AT    +D
Sbjct: 18  NPLPSAGSPWIEGRFEENLIVTTLEQAMNWGQLSSVWPLTFG-IACCAMEMMATGMSKYD 76

Query: 65  AERFGI-KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI-F 122
            +RFG      +PR AD+++  G VT  M S   R +   PDPK  I+ GAC   GG  F
Sbjct: 77  LDRFGSGAFRATPRQADLMIVAGTVTYKMASRIRRLYDQMPDPKYVIAMGACTIGGGPYF 136

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
              Y V  G D +VPVDVYIPGCPP P A L G       +  +   R 
Sbjct: 137 KYGYHVVKGVDLVVPVDVYIPGCPPRPEALLEGVMRIQDKIRARKLGRN 185


>UniRef50_D2BG44 Ni/Fe hydrogenase, small subunit n=5 Tax=Dehalococcoides
           RepID=D2BG44_DEHSV
          Length = 354

 Score =  170 bits (430), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 76/300 (25%), Gaps = 59/300 (19%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF------ 63
           A G    +++          +  +  +   V  +   GCNGC I     +SP        
Sbjct: 15  AAGSTAALSLGALKLPEFEKMFAEALKEIPVIWLQGAGCNGCTISTINVVSPTIQDLLLT 74

Query: 64  --------DAERFGIKVVPSPRHA-----D-------ILLFTGAVTRAMR---------- 93
                     +     +      A     D       +L+  G+V               
Sbjct: 75  SVVPGTHVSMQYHPTIMAAQGDLAMSTITDTAAKGPFVLVIEGSVPLKDDGVYAEIGEKD 134

Query: 94  ----SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG--TDKIVP------VDVY 141
               +        AP     ++ G C   GGI        G     +I+         V 
Sbjct: 135 GEGITMLEHVLNLAPKALAVVAAGTCSAFGGITASAPNPTGAKAVSEILKEHNITTPVVN 194

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA-- 199
           +PGCPP P   +   A  L      +     G       ++LH    +    +    A  
Sbjct: 195 LPGCPPHPDWVVGTLATVLMSGLDALDLDDMGRPKAYYGKLLHDQCPRRGHYEKGLFATK 254

Query: 200 --RRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEN-------DPRLNEIVSHLNHVVE 250
                  +  G +    Y     +      RW    +        P   + VS +     
Sbjct: 255 LSEPYCLFLVGCKGPVTYADCSDRLWNNKTRWCVEADSPCIGCAHPGFPDEVSPMFEAPP 314


>UniRef50_B1ZUJ0 NADH-quinone oxidoreductase subunit B 2 n=13 Tax=Bacteria
           RepID=NUOB2_OPITP
          Length = 191

 Score =  169 bits (429), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           M +L+     +   +P  V +     K   L  + R+  ++ +  G    C IE+ A   
Sbjct: 14  MPSLVAATGPSTPEIPPEVSQIARFAKLDDLLALGRANSLWPLTFG-LACCAIEMMAAGM 72

Query: 61  PLFDAERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
             FD  RFG +   PSPR AD+++  G V + M       +    +PK  I+ G C  SG
Sbjct: 73  ARFDISRFGAEVFRPSPRQADVMIVAGTVNKKMAPAVKLLYDQMLEPKWVIAMGQCAISG 132

Query: 120 GIF--HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           G F     Y V  G D++ PVDVY+PGCPP P A + G       +  K  
Sbjct: 133 GPFKYPGQYAVVEGVDQLFPVDVYVPGCPPRPEALIEGILKLEEKITGKRR 183


>UniRef50_Q1IZX2 NADH-quinone oxidoreductase subunit B n=16 Tax=cellular organisms
           RepID=NUOB_DEIGD
          Length = 178

 Score =  169 bits (428), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRH 78
            E +       L    RS  ++    G    C IE+ ++     D  RFG +    SPR 
Sbjct: 16  SEGVLFSTLEKLVAWGRSNSLWPATFG-LACCAIEMMSSTDGRNDLSRFGSEVFRASPRQ 74

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           AD+++  G +++ M     R +   PDPK  IS GAC +SGG+F + Y V    D +VPV
Sbjct: 75  ADVMIVAGRLSKKMAPIMRRVYDQMPDPKWVISMGACASSGGMF-NNYAVVQNVDHVVPV 133

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           DV++PGCPP P A +Y        +  + +   
Sbjct: 134 DVFVPGCPPRPEALIYAVMQLQKKVRGEAYDAR 166


>UniRef50_A6DCC1 NI/FE-HYDROGENASE SMALL SUBUNIT n=1 Tax=Caminibacter mediatlanticus
           TB-2 RepID=A6DCC1_9PROT
          Length = 369

 Score =  169 bits (428), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 65/273 (23%), Gaps = 50/273 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD----- 64
            +     + +      + A  +  +     V  ++   C G    I     P  D     
Sbjct: 39  VSVTTAMLGLPGFFEPLVAQSINAL-NKIPVIWMNYQDCAGNSESILRASKPTIDEIIIN 97

Query: 65  ---AERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSPA----------- 96
               E   + + PS   A+              +L   G++  A                
Sbjct: 98  LISLEFHELLMAPSGTQAENQLEETIQNYEGEYLLFVEGSIPLADNGVYGTIGPSGETYK 157

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG-----GTDKIVPVDVYIPGCPPTPAA 151
               + A   K  I+ G C + GG+        G     G D I    + +P CP  P  
Sbjct: 158 DHLLRLASKAKAIIAVGNCASFGGVVAANPNPTGATGVMGVDGINVPIINLPACPVNPET 217

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR---------RL 202
            +    M   L  +              A  +H    + +                    
Sbjct: 218 MIGVLIMY-ALTGELPELDSLKRPLFAYASRIHDRCERRVHFDAGEFVESFGDNASQSGY 276

Query: 203 AGYRYGRQIADDYLTQLGQGEEQVARWLEAEND 235
             Y+ G +    +       +     W      
Sbjct: 277 CLYKVGCKGPFTF-NNCPTVKFNDTSWPVDAGH 308


>UniRef50_Q3ZXS0 NADH-quinone oxidoreductase subunit B n=5 Tax=Dehalococcoides
           RepID=NUOB_DEHSC
          Length = 200

 Score =  169 bits (428), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 2/156 (1%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPS 75
                 +       +    R   ++ V  G    C IE+    +  +D  RFG+     S
Sbjct: 46  EEPPPGVFITSVEKVLNWSRHYSLWPVMFG-LACCAIEMMCMAASRWDLARFGMDIFRAS 104

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G +T  M     R +   P+PK  ++ GACG SGG+F D Y V  G + +
Sbjct: 105 PRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMGACGTSGGLFRDSYSVVPGFNLV 164

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
           VPVDVY+PGCPP P A +         +++    + 
Sbjct: 165 VPVDVYVPGCPPRPEALMRAIMDIHEKIDKTRILKR 200


>UniRef50_B6YTX0 Hydrogenase 4, component I or formate hydrogen lyase, subunit 7 n=1
           Tax=Thermococcus onnurineus NA1 RepID=B6YTX0_THEON
          Length = 273

 Score =  169 bits (428), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 120/241 (49%), Gaps = 30/241 (12%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS +V+ ++ G CNGC+IEI   L+P +D ERFGIK+V SPRHA  LL +G +TR     
Sbjct: 8   RSIWVFHLNTGSCNGCDIEIIDVLTPFYDVERFGIKLVGSPRHAHALLVSGPLTRQAYYG 67

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV---------------WGGTDKIVP-- 137
           A    ++  P+P++ ++ G C  SGGIF++ Y V                GG  +++   
Sbjct: 68  AKETIKAMPPEPRVIVAIGTCTCSGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADL 127

Query: 138 --------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
                     +YIPGCPP P   +YG A  +GL+E+K+  +   +    P ++  G + +
Sbjct: 128 RDEGEKVGPVIYIPGCPPRPEEIIYGIAQLVGLVEKKLSYQEYSDE-LVPFKLPEGPLEE 186

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVV 249
            +R+ +    R L GY    +I +D++  + + E+        E   RL +  +     V
Sbjct: 187 RIRLTLMERLRHLVGYLDREKILEDFMGLVKEAEKSEN---PREELARLVKDYAAKCGDV 243

Query: 250 E 250
            
Sbjct: 244 R 244


>UniRef50_B8J1E3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774
           RepID=B8J1E3_DESDA
          Length = 185

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 88/146 (60%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           +S ++   DCG CNGC+IE+ A L+P++D ERFG+    +P+HAD+LL TG V    R  
Sbjct: 14  KSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVNAGNPKHADVLLVTGTVNHRNRHV 73

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYG 155
             + ++  P PK  IS GAC  SGG+F D Y V  G   ++PVDV++PGCPP P A + G
Sbjct: 74  LKQIYEQMPSPKAVISLGACNLSGGVFKDTYNVLNGAHNVIPVDVFVPGCPPKPEAIIDG 133

Query: 156 FAMALGLLEQKIHARGPGELDEQPAE 181
              ALG+L+ K+      +    P +
Sbjct: 134 VVEALGVLKAKMGMGPVPQATFMPGD 159


>UniRef50_A9KS72 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A9KS72_CLOPH
          Length = 144

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/141 (43%), Positives = 87/141 (61%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +K +K+S ++   D   CNGC+IE+ A L+PL+D ERFGI    +P+HADILL TG+V  
Sbjct: 1   MKFVKKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADILLITGSVNE 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
                  + ++   +PKI ++ G C NSGGIF + Y V GG DK++PVDVY+PGC   P 
Sbjct: 61  QNIPVVKQIYEQMAEPKIVVAVGICANSGGIFAECYNVSGGVDKVLPVDVYVPGCAARPE 120

Query: 151 ATLYGFAMALGLLEQKIHARG 171
           A + G    L +LE+K     
Sbjct: 121 AIIDGVVKGLAILEEKQKYAR 141


>UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular
           organisms RepID=NUBCD_PELCD
          Length = 794

 Score =  168 bits (426), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 17  MTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPS 75
            ++ ++I            R   ++ +  G  + C +E+  +++P FD  RFG + +  +
Sbjct: 3   ESIPKNIILTTLDDAINWGRKNSMWPMFFG-LSCCFVEMMGSMTPRFDLARFGAEVLRGT 61

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI 135
           PR AD+++  G   + M +  LR ++   +PK  I+ G+C NSGG++ D+Y V  G +++
Sbjct: 62  PREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCANSGGMY-DVYSVMQGVNQV 120

Query: 136 VPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           +PVDVYIPGCPP P A + G       + +K     P
Sbjct: 121 LPVDVYIPGCPPRPEAFMQGLMTLQEKIARKESPARP 157


>UniRef50_A9A345 NADH-quinone oxidoreductase, B subunit n=1 Tax=Nitrosopumilus
           maritimus SCM1 RepID=A9A345_NITMS
          Length = 174

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 3/172 (1%)

Query: 1   MSNLLGPRDANG-IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATL 59
           + +L+ P +AN  +     + E              R   ++ V       C +E  A  
Sbjct: 2   LKDLVTPENANVFVGKLGDILEKAIDKPLGYAINWGRIWSLWPVHI-ETACCSVEFGAAS 60

Query: 60  SPLFDAERFGIKVVP-SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
           SP +D ERFGI     S R  D+++  G +TR M       +   P+PK  I+ GAC  +
Sbjct: 61  SPRYDVERFGIIEAFGSLRQCDLVVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAIT 120

Query: 119 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           GG++ D Y V  G D ++PVDVY+PGCPP P   + G  +    +++    +
Sbjct: 121 GGLYFDSYNVLPGIDGVIPVDVYVPGCPPRPETLIQGCILLQEKIKRMKARK 172


>UniRef50_B0R3U2 NADH dehydrogenase-like complex subunit B n=11 Tax=Halobacteriaceae
           RepID=B0R3U2_HALS3
          Length = 235

 Score =  168 bits (425), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 5/201 (2%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           M + +  R  + +         I +     +  ++ S  ++ +  G    C IE+  T S
Sbjct: 25  MGDGVDDRFNSRLREAFGSTPFILTKFDKFMNWVRGS-SMFMLQFG-IACCSIEMMHTYS 82

Query: 61  PLFDAERFGI-KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
              D +RF       SPR AD+++  G +         R +   P+PK  ++ G C  SG
Sbjct: 83  VKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPEPKFVVNMGNCSTSG 142

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ- 178
           G F + Y V  G ++++PVD++IPGCPP P A +YG A     +     +    +  E  
Sbjct: 143 GPFQEGYNVVKGAEEVIPVDIHIPGCPPRPEALVYGVAKLQERIANGESSPVTVKPYELE 202

Query: 179 -PAEILHGDMVQPLRVKVDRE 198
              ++   ++V  L   +D E
Sbjct: 203 EFGDLERDEIVDKLAADIDEE 223


>UniRef50_B1ZSE5 NADH ubiquinone oxidoreductase 20 kDa subunit n=14 Tax=Bacteria
           RepID=B1ZSE5_OPITP
          Length = 279

 Score =  168 bits (425), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 97/158 (61%), Gaps = 4/158 (2%)

Query: 13  IPVPMTVDESIASMKASLLKK----IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
            P      E   ++   L  +    + RS ++  VD G CNGCE+EI A   P++D ERF
Sbjct: 122 APQISETGEKTEALGRELQNRIHSLLGRSLHIREVDAGSCNGCEVEINALSGPIYDLERF 181

Query: 69  GIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
           GI +V SPRHAD+LL TG VTR M     + + + P+P++ ++ GACG SGG+F   Y  
Sbjct: 182 GIHLVASPRHADMLLVTGPVTRNMELALRKTYDATPEPRLVVAVGACGCSGGMFGRNYAT 241

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
            G  D ++PVDVYIPGCPP P A L+G  +A+G LE++
Sbjct: 242 CGSVDSVLPVDVYIPGCPPNPFALLHGILLAVGRLEKR 279


>UniRef50_A8M069 NADH-quinone oxidoreductase subunit B 1 n=6 Tax=Actinomycetales
           RepID=NUOB1_SALAI
          Length = 188

 Score =  167 bits (424), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 74/153 (48%), Gaps = 7/153 (4%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
           VP  + E I       +    R   ++  + G    C IE  AT     D  R G+    
Sbjct: 3   VPAVLGEPI-----RFVLNWGRRYSLWVFNFG-LACCAIEFIATSMSRHDFMRLGVIPFA 56

Query: 75  S-PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
             PR AD+++ +G VT  M     R +   P+PK  IS+GAC N GG + D Y V  G D
Sbjct: 57  HGPRQADLMVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVD 116

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
           +++PVDVY+PGCPP P A L+G       +  +
Sbjct: 117 QLIPVDVYVPGCPPRPEALLHGILRLQEKIAAE 149


>UniRef50_A7NNQ8 Hydrogenase (NiFe) small subunit HydA n=12 Tax=Bacteria
           RepID=A7NNQ8_ROSCS
          Length = 417

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 74/298 (24%), Gaps = 58/298 (19%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL---- 62
              +  + +P T    IA               V  ++   C G         SP     
Sbjct: 27  AAMSAALALPSTFTPRIARAL-----NTAERLPVVWLEFQDCAGNTESFLRAESPGVADI 81

Query: 63  ----FDAERFGIKVVPSPRHAD--------------ILLFTGAV---------TRAMRSP 95
                  E     + P+   A+              I +  G++         T   R+ 
Sbjct: 82  VLEQISLEYHETIMAPAGHRAEHSLDAVVENYPGQYIAIVEGSIPIANGGVYCTIGGRTA 141

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPVD---VYIPGCPPTPA 150
              A +   +    I+ GAC   GG         G  G  + VP     + +PGCP    
Sbjct: 142 LSIAERVCSNALATIAVGACAWDGGWPAASPNPTGAVGVRQAVPGLKNLINLPGCPMNVI 201

Query: 151 ATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL-------- 202
                    L   +Q       G       +++H +  +       R   R         
Sbjct: 202 NLTAVIVHYLT-FKQLPATDEQGRPFFAYGQLIHNNCERRGHFDSGRFVERWGDEGHRLG 260

Query: 203 -AGYRYGRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHVVEEA 252
              Y+ G +           G    + W             PR  + +S     +   
Sbjct: 261 WCLYKMGCKGPQTLSNCPAVGWNGTSYWPIGAGHGCVGCMSPRFWDTMSPFYERLPNV 318


>UniRef50_C1VB41 NADH dehydrogenase subunit B n=1 Tax=Halogeometricum borinquense
           DSM 11551 RepID=C1VB41_9EURY
          Length = 236

 Score =  167 bits (422), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 5/182 (2%)

Query: 20  DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI-KVVPSPRH 78
              I +   + +  ++ S  ++ +  G    C IE+  T S   D +RF       SPR 
Sbjct: 45  SPFILTKFDNFMNWVRGS-SMFMLQFG-IACCSIEMMHTYSVKHDLDRFAAGVPRASPRQ 102

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           AD+++  G +         R +   P+PK  +  G+C  SGG F + Y V  G ++++PV
Sbjct: 103 ADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVGMGSCTVSGGPFQEGYNVIKGAEEVIPV 162

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ--PAEILHGDMVQPLRVKVD 196
           D+++PGCPP P A +YG A     + +   +    +  E     ++   +++  L  ++D
Sbjct: 163 DIHVPGCPPRPEALIYGVAKLQQRIAEGESSPVTVKPYELEQFGDLEQDELIDHLADQID 222

Query: 197 RE 198
            E
Sbjct: 223 EE 224


>UniRef50_Q5HT18 Hydrogenase, (NiFe)/(NiFeSe) small subunit family n=14
           Tax=Campylobacter RepID=Q5HT18_CAMJR
          Length = 497

 Score =  166 bits (421), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 67/273 (24%), Gaps = 43/273 (15%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF 63
           ++       +   +++   I ++     + I     +  +    C GC   +     P F
Sbjct: 30  VINEESVKILARHLSLGNEIPALAQRFFQ-IAPKTKLVWLHLCECTGCSESLLRADLPSF 88

Query: 64  D--------AERFGIKVVPSPRHAD-----------ILLFTGAVTRAMRSPA-------- 96
           D         E     +  +   A+           IL   G V                
Sbjct: 89  DELVFDFFSLEYHETLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGES 148

Query: 97  --LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV-PVDVYIPGCPPTPAA 151
                 + A   K   + G C + GGI           G  +++    V IPGCPP+   
Sbjct: 149 GYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDIN 208

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL--------- 202
            +        L                  + LH    +  + +    A            
Sbjct: 209 IIATL-SFFALFGVLPELDEQNRPVWAYGKCLHDICERKAKFESGIFAEHFDDEAAKNGA 267

Query: 203 AGYRYGRQIADDYLTQLGQGEEQVARWLEAEND 235
             ++ G +    Y             W  A   
Sbjct: 268 CLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGH 300


>UniRef50_D2EGC1 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGC1_9EURY
          Length = 172

 Score =  166 bits (420), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 5/153 (3%)

Query: 17  MTVDESIASMKASLLK---KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
             + E +       +       RS  ++ +  G  + C IE+    +   DA+R G+   
Sbjct: 10  PGLYEVVFMKAEKFINTVLNWGRSNSLWPLTFG-TSCCAIEMMTFGATKVDADRLGVLFN 68

Query: 74  P-SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
             SPR +D++L +G +T+ M    L  ++  PDPK  I+ GAC  SGG++HD Y    G 
Sbjct: 69  GDSPRQSDLILVSGTITKKMARRLLNVYEQIPDPKYVIAVGACNVSGGLYHDSYNTIEGI 128

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           D+I+PVD +IPGCPP P   L    +   L+++
Sbjct: 129 DRIMPVDAFIPGCPPRPEEFLDAVRVLQKLIKE 161


>UniRef50_A0B811 F420H2 dehydrogenase subunit B n=6 Tax=Archaea RepID=A0B811_METTP
          Length = 190

 Score =  165 bits (419), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 1/166 (0%)

Query: 7   PRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           P           + + I       +    R   ++ +       C +E+     P +D +
Sbjct: 26  PVMDVWFTTTEKIHQIIQMGPIKNVLNWGRKNSLWFL-MQPMGCCGVEMLVFGCPHYDCD 84

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           RFGI    +PR AD+++ +G +TR         W+   +PK CI+ G C  SGG F+D Y
Sbjct: 85  RFGIIPRATPRQADVMIISGYITRKYLPAIKNLWEQMLEPKWCIAVGECAISGGPFYDSY 144

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
            +   T    P+DVY+PGCPP P   + GF      ++Q+   RG 
Sbjct: 145 NIIQNTSDFFPIDVYVPGCPPRPEQFIKGFVELQEKIKQRKDKRGY 190


>UniRef50_A1ASR2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=cellular
           organisms RepID=A1ASR2_PELPD
          Length = 179

 Score =  165 bits (419), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 96/153 (62%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             RS +VY  + GGCNGC+IE+   L+P +D ERFGIK+V SPRHAD++L  G   R+  
Sbjct: 10  FGRSLWVYHANSGGCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQGPAMRSTG 69

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               RA+ + P PK+  + G+C   GGI+HD Y V G  +K++PV+ Y+PGCPP P A +
Sbjct: 70  KALQRAYAAMPGPKLVFAIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPGCPPRPEAII 129

Query: 154 YGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
           +G A+A GL+++K       ++ + P    H +
Sbjct: 130 WGVAVAAGLVDKKTAPVEFKQVSDFPMPRYHPE 162


>UniRef50_C9RJJ6 NADH-quinone oxidoreductase, B subunit n=1 Tax=Fibrobacter
           succinogenes subsp. succinogenes S85 RepID=C9RJJ6_FIBSS
          Length = 211

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 12/194 (6%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV-PSPRHA 79
            +I +     L    RS  ++    G    C IE  +T    +D  R G + V  +PR +
Sbjct: 8   PNIITSSLDFLVNWGRSNSLWPFPYG-TACCAIEFMSTEVGRYDLSRIGSEYVRFTPRQS 66

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+LL  G +T        R ++   +P+  I+ GAC +SGG F+D YC   G D I+PVD
Sbjct: 67  DVLLVAGTITYKQAPILKRIYEQMAEPRWVIAMGACASSGG-FYDCYCTVPGIDHIIPVD 125

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA 199
           VYI GCPP P A           ++ +          +Q AE +   +          EA
Sbjct: 126 VYIGGCPPRPEAFFDAMFDLQKKVKDE-------SFMKQRAESVKEQLEMIK--VKTAEA 176

Query: 200 RRLAGYRYGRQIAD 213
           +R A      ++ D
Sbjct: 177 KREAAACAREKVVD 190


>UniRef50_A6UVJ5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=A6UVJ5_META3
          Length = 246

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/144 (45%), Positives = 84/144 (58%)

Query: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
           T+ E   S   S+ K   +S Y+  V  GGCN C+ +I    +P++D  RFGIK V SPR
Sbjct: 103 TLKEPDTSSLKSIKKLFGKSVYLREVCAGGCNACDADINVLNTPVYDLSRFGIKFVASPR 162

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
           HAD L+ TG VT+ M    ++ + + P PK  I+ G C  SGGIF +   V GG DKI+P
Sbjct: 163 HADGLVITGPVTKNMELALMKTYDATPSPKFVIAVGTCAISGGIFRENEEVVGGVDKILP 222

Query: 138 VDVYIPGCPPTPAATLYGFAMALG 161
           VD+YIPGCPP P   LY F     
Sbjct: 223 VDLYIPGCPPHPFTNLYAFVKFFK 246


>UniRef50_D2R5G9 NADH-quinone oxidoreductase, B subunit n=2 Tax=Planctomycetaceae
           RepID=D2R5G9_9PLAN
          Length = 192

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 3/152 (1%)

Query: 16  PMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVP 74
            + + E++   K   L    R   ++ +       C IE+ AT +   D  RFG +    
Sbjct: 2   AIDLPENVMVTKLDELANWCRKNSLWPMPFA-TACCGIELMATGASRHDLARFGAEVFRF 60

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SPR  D+++  G V   M     R WQ   +PK CIS GAC ++GG+F D Y V  G D+
Sbjct: 61  SPRQCDLMIVAGRVVMKMLPVLQRIWQQMHEPKWCISMGACASTGGVF-DTYAVVQGIDR 119

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
            +PVD+Y+PGCPP P             ++++
Sbjct: 120 FIPVDMYVPGCPPRPEQLTQAIIDLQDKIQRE 151


>UniRef50_B3TC56 Putative NADH ubiquinone oxidoreductase, 20 Kd subunit n=1
           Tax=uncultured marine microorganism HF4000_APKG10H11
           RepID=B3TC56_9ZZZZ
          Length = 182

 Score =  164 bits (416), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKK---IKRSAYVYRVDCGGCNGCEIEIFA 57
           M N+L P     I   +    ++A  K  L+KK     R   ++ V       C  E  A
Sbjct: 5   MKNIL-PDGTKTIVQDIVDGVNVAIKKVPLVKKLITWGRKNSLWVVHLT-TGCCSPEFAA 62

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
                +D ERFG  V+ + R  DIL+  G V   M     R +   PDPK  I+ G C  
Sbjct: 63  LAGAGYDMERFGPLVMAAMRQCDILIIEGQVADKMAEVVKRTYDQMPDPKYVIAVGNCAI 122

Query: 118 SGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
           SGG + D Y +  G DKI+PVDVY+PGCPP P   +    +    ++++
Sbjct: 123 SGGFYWDSYSMVMGIDKIIPVDVYVPGCPPRPEDWIDAIRLVQTRMDKE 171


>UniRef50_Q24VQ2 Ni,Fe-hydrogenase small subunit n=2 Tax=Desulfitobacterium
           hafniense RepID=Q24VQ2_DESHY
          Length = 319

 Score =  164 bits (416), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 80/289 (27%), Gaps = 50/289 (17%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-----LFD 64
              + + +++   IA    +    + +   V  +   GC GC   + +++ P     + D
Sbjct: 36  CAALGIDLSLAPQIAEAAEA---NLSKKP-VIWMQGQGCTGCSESLLSSVDPGPEEIILD 91

Query: 65  AE---RFGIKVVPSPRHA-----D-------ILLFTGAVTRAM--------RSPALRAWQ 101
                     +  S   A     D       IL+  G++  A         +    +   
Sbjct: 92  LLSVRYHPTLMAASGEQAVQSLEDCIAQGHYILVLEGSIPTADSRYCFVEGKPFIEQFKL 151

Query: 102 SAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP--VDVYIPGCPPTPAATLYGFAMA 159
           +A   +  I+ G+C   GGI    +    G  +++     V +P CP  P   +      
Sbjct: 152 AAEKAEAVIAVGSCACYGGIPRAGFTGAAGAQEVLEGVKVVNLPSCPVKPDRLVGLLLYY 211

Query: 160 LGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR--------RLAGYRYGRQI 211
           L          G    +      LH    +    +                  Y  G + 
Sbjct: 212 LS-HNALPKLDGLNRPEAYYRYTLHDSCYRRWHYEKGEYLEDWNNPDTLDWCLYHKGCKG 270

Query: 212 ADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHVVEEAR 253
            D Y           A +             P   +  + L    +E +
Sbjct: 271 QDTYTNCANAWWNGGANFCGYAGSPCAGCSQPEYYDGFAPLFVNPKEVK 319


>UniRef50_A5GFC8 Hydrogenase (NiFe) small subunit HydA n=6 Tax=Proteobacteria
           RepID=A5GFC8_GEOUR
          Length = 378

 Score =  164 bits (416), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 78/273 (28%), Gaps = 46/273 (16%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP------ 61
           +        M +  S+ +  A  ++K      V  +    C GC   +  +  P      
Sbjct: 24  KTCITATAMMGLPFSMHTKVAEAMEKNGN-PSVIWLHFQECTGCSESLLRSTHPTISTLI 82

Query: 62  --LFDAERFGIKVVPSPRHAD--------------ILLFTGAVTRAM---------RSPA 96
             +   +     +  S   A+              +L+  GA+             ++  
Sbjct: 83  LDMISLDYHETLMAGSGAQAEKSLHDSMLANKGKYLLVVEGAIPTKESGIYCKVGGKTAL 142

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVP--VDVYIPGCPPTPAAT 152
                +A +    IS G C + GGI        G  G   IV     + IPGCPP+P   
Sbjct: 143 ESLQHAASNAAAIISIGTCASYGGIQSVGPNPTGAVGVRDIVKDKPIINIPGCPPSPYNL 202

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARR---------LA 203
           L      L   ++       G         +H    +       R A+            
Sbjct: 203 LSTVMYYLT-FKKIPELDALGRPKFAYGRKIHEHCERRPHFDAGRFAKAYGDDTHAQGYC 261

Query: 204 GYRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
            ++ G +    Y     Q   +V  W  +   P
Sbjct: 262 LFKLGCKGPATYANCSVQRFNEVGVWPVSVGHP 294


>UniRef50_A3THJ2 NADH dehydrogenase beta subunit n=2 Tax=Bacteria RepID=A3THJ2_9MICO
          Length = 198

 Score =  164 bits (415), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK- 71
           + +   +           +    R A ++    G    C IE+ A  +P +D  RFG++ 
Sbjct: 1   MGLEEKLPAGFVLTTLESVAGYMRKASIWPATFG-LACCAIEMMAVGTPDYDIARFGMER 59

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
              +PR AD+++  G V+  M     + +   P+PK  IS G C +SGG+F + Y +  G
Sbjct: 60  FSATPRQADLMIVAGRVSNKMAPVVRQVYDQMPNPKWVISMGVCASSGGMF-NNYAIVQG 118

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
            D I+PVD+Y+PGCPP P   L         ++
Sbjct: 119 VDHIIPVDIYLPGCPPRPEMLLNAIIELHDQIQ 151


>UniRef50_A8MBS9 NADH-quinone oxidoreductase, B subunit n=5 Tax=Thermoproteaceae
           RepID=A8MBS9_CALMQ
          Length = 374

 Score =  164 bits (415), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 14/235 (5%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           +G    N + + +        +    L        ++         C +E     +P +D
Sbjct: 1   MGDTTVNTLKITLKSIGMDIKLLPDSLASWGTKFSIWPAHL-VTACCGVEFAHASAPGYD 59

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD 124
           AER+G   +  PR  + ++  G VTR M      A++  P PK  I+ G+C   GG+F +
Sbjct: 60  AERWGFLPIFGPRQTNSIVIEGTVTRKMARIVKTAYEQMPYPKFVIAMGSCAMEGGVFWN 119

Query: 125 LYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE-----QKIHARGPGELDEQP 179
            Y V    ++IVPVD ++ GCPPTP A +    M    +E       I            
Sbjct: 120 SYHVVR-VNEIVPVDAWVMGCPPTPEAVIRAIRMVQSKIEGKEVKPNIRPNPVDLSKVLK 178

Query: 180 AEILHGDMVQPLRVKVDR-------EARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
            +        P R++ +        +      +  G+++ D +   L  G +  A
Sbjct: 179 PDKPQRPPNPPHRIEFELIKDINVCKPAANVKWELGQKLIDGFKESLKDGVKNTA 233


>UniRef50_B1ZRT2 NADH-quinone oxidoreductase subunit B 1 n=4 Tax=Bacteria
           RepID=NUOB1_OPITP
          Length = 171

 Score =  164 bits (415), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK- 71
           +     ++  I   KA  +    R+  ++ +  G    C IE+    +  FD  RFG + 
Sbjct: 8   LTYSSAIEGGIVVSKADAVINWIRTNSMWPMPMG-LACCAIELMQVGNGRFDIARFGAEV 66

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
           +  SPR +D ++  G+VT  M     R +     PK  I+ GAC +SGG++   Y    G
Sbjct: 67  MRFSPRQSDCMIVAGSVTYKMAPQIRRIYDQMMSPKWVIAMGACASSGGMYR-SYAHMQG 125

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
            D+I+PVDVYI GCPP P   L         +  +   +  
Sbjct: 126 VDRILPVDVYISGCPPRPEGILDALMKLQAKIRTERAGQNL 166


>UniRef50_A0RY66 NADH-ubiquinone oxidoreductase, subunit B n=3 Tax=Thaumarchaeota
           RepID=A0RY66_CENSY
          Length = 160

 Score =  164 bits (414), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 2/153 (1%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP-SPRHA 79
           E              R   ++ V       C +E  A   P +D ERFGI     S R  
Sbjct: 9   EKAIDKPLGYAINWGRIWSLWPVHI-ETACCSVEFGAASGPKYDVERFGIIEAFGSLRQC 67

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+++  G +TR M       +   P+PK  I+ GAC  +GG++ D Y V  G D ++PVD
Sbjct: 68  DLIVVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPVD 127

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           VY+PGCPP P   + G  +    +++    +  
Sbjct: 128 VYVPGCPPRPETLIQGCMLLQEKIKRMRARKEV 160


>UniRef50_B9KFD7 Quinone-reactive Ni/Fe-hydrogenase, small subunit n=2
           Tax=Campylobacter RepID=B9KFD7_CAMLR
          Length = 544

 Score =  164 bits (414), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 63/240 (26%), Gaps = 43/240 (17%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSP--------LFDAERFGIKVVPSPRHAD--------- 80
             +  +    C GC   +  T  P            E     +  S   A+         
Sbjct: 61  PSLIWLHLSECTGCSESLLRTSLPDFLDLIFDFISLEYHETFMSASGHQAESHLEEVLEK 120

Query: 81  ---ILLFTGAVTRAMRSPA----------LRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
              +L   G V                      + A + K   + G C + GGI      
Sbjct: 121 KDFLLAVEGGVCAIDPFYLTIGAHGENGYEILQKCAKNAKTIFAMGTCSSFGGIQAAHPN 180

Query: 128 VWG--GTDKIV-PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
                G  K++    + IPGCPP+ A  +      + L EQ +             + LH
Sbjct: 181 PTKSIGISKVLEEKVINIPGCPPSDANIIAALCFYI-LFEQDMALDDQNRPLALYGKCLH 239

Query: 185 GDMVQPLRVK--------VDREARR-LAGYRYGRQIADDYLTQLGQGEEQVARWLEAEND 235
               +  + +         D + +     ++ G +    Y             W  A   
Sbjct: 240 DLCERKAKFEAGNFAQSFDDEKIKEGYCLFKVGCKGPYAYNNCPKVKFNSKTSWPVAAGH 299


>UniRef50_C9RKY2 NADH-quinone oxidoreductase, B subunit n=2 Tax=cellular organisms
           RepID=C9RKY2_FIBSS
          Length = 419

 Score =  164 bits (414), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 8/172 (4%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           L P+  + IP    V  +I       +    R+  ++ +  G  + C IE+ ++    +D
Sbjct: 6   LAPKILDPIPGGKYVVNAI-----DYVVNWARANSIWPLTYG-TSCCAIEMMSSSMARYD 59

Query: 65  AERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF- 122
             RFG +    SPR AD+ +  G +TR M       W+  P PK  I+ GAC  SGG F 
Sbjct: 60  IARFGSEVFRSSPRQADLFILAGTITRRMAPAIQMLWEQIPGPKYVIAMGACTISGGPFI 119

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           +D Y V  G   ++PVDV++PGCPP P A  +G       + ++       E
Sbjct: 120 YDNYSVVRGAQNLIPVDVFVPGCPPRPEALFHGLLTLREKILKETCRNPWHE 171


>UniRef50_C6PUG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Clostridium
           carboxidivorans P7 RepID=C6PUG1_9CLOT
          Length = 242

 Score =  163 bits (413), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/143 (41%), Positives = 86/143 (60%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +K  +  K KRS  +  VD G CNGC +E+  T +  +D  R+GIK   SPRHAD ++
Sbjct: 100 QEVKEKIYSKFKRSLVLRSVDTGSCNGCMMEVSNTQNTYYDLSRYGIKFAASPRHADGIV 159

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            TG VT  M+   ++ + +  DPKI I+ G+C  SGGIF D Y V    ++I+ V++ IP
Sbjct: 160 VTGPVTLNMKEALIKTYDAISDPKIVIAVGSCAYSGGIFKDGYSVCEDLNEILKVNLVIP 219

Query: 144 GCPPTPAATLYGFAMALGLLEQK 166
           GCPP+P A LYG    +  L+++
Sbjct: 220 GCPPSPQAILYGMLKIINKLDEE 242


>UniRef50_Q6ARY6 Related to periplasmic [NiFeSe] hydrogenase, small subunit
           [Precursor] n=1 Tax=Desulfotalea psychrophila
           RepID=Q6ARY6_DESPS
          Length = 300

 Score =  163 bits (413), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 65/272 (23%), Gaps = 45/272 (16%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP--- 61
           L  + +  + +  +    +A    +L         V  +    C+GC I +  + SP   
Sbjct: 12  LSAKMSVVLGLGSSAIPQVAEALEALTTGRS---KVLWLQAQSCSGCSISMLDSESPGPA 68

Query: 62  -----LFDAERFGIKVVPSPRHA------------DILLFTGAVTRAMRSPA-------- 96
                             +                 IL+  G++   M            
Sbjct: 69  ELLTQYISLLFHHTLSAATGESCMHIVRKSVQQGGYILVVEGSIPAGMPEACMMGGIPVG 128

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT--------DKIVPVDVYIPGCPPT 148
               Q+A      I+ G C   GGI        G          +KI    + IPGCP  
Sbjct: 129 ELIKQAAERADYVIALGTCAAFGGIPAAEGNPTGAVPLGPFLQANKIKTPIINIPGCPSH 188

Query: 149 PAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL----AG 204
           P   +                          A   H    +    + +  AR+       
Sbjct: 189 PDWLVGTLVHLCK--FGLPPCDEQRRPKMFFASKNHDKCPRFSDYEQENFARKFSDPGCL 246

Query: 205 YRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
           ++ G      Y     +              P
Sbjct: 247 FKLGCLGVSTYADCTIRDRNGGTNACIKAGAP 278


>UniRef50_UPI00016C3AA7 NADH-quinone oxidoreductase, B subunit n=2 Tax=Bacteria
           RepID=UPI00016C3AA7
          Length = 201

 Score =  163 bits (413), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 72/152 (47%), Gaps = 3/152 (1%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VV 73
               +           L  + R   ++ +       C IE+ AT S  +D  RFG + + 
Sbjct: 2   ALTNMLPDFMIAPLDYLANMARKHSLWPMPFA-TACCGIELMATASSRYDIARFGSEAMR 60

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR  D+++  G V   M     R W   P+PK CIS GAC +SGG+F D Y V  G D
Sbjct: 61  FSPRQCDVMIVAGRVAMKMVPVMQRIWLQMPEPKWCISMGACASSGGVF-DTYAVVQGID 119

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           + +PVDVY+PGCPP P   +         +++
Sbjct: 120 RFIPVDVYVPGCPPRPEQLIRAVLDLQEKIQK 151


>UniRef50_P12635 Uptake hydrogenase small subunit n=8 Tax=Bacteria RepID=MBHS_BRAJA
          Length = 363

 Score =  163 bits (412), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 62/277 (22%), Gaps = 53/277 (19%)

Query: 3   NLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
             L        P+  +   +    K            V  +    C  C      +  PL
Sbjct: 26  CSLTATSLGLGPLAASRIANALETKP--------RVPVIWMHGLECTCCSESFIRSAHPL 77

Query: 63  --------FDAERFGIKVVPSPRHAD--------------ILLFTGAVTRAM-------- 92
                      +     +  +   A+              IL   G              
Sbjct: 78  VKDAVLSMISLDYDDTIMAAAGHQAEAILEETRAKHKGQYILAVEGNPPLNEGGMFCIDG 137

Query: 93  -RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPP 147
            +    +    A D    I++GAC + G +             DK++     + +PGCPP
Sbjct: 138 GKPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNKPIIKVPGCPP 197

Query: 148 TPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL----- 202
                + G    +    +       G      ++ +H    +       +          
Sbjct: 198 IAE-VMTGVVTFITTFGKLPELDRQGRPKMFYSQRIHDKCYRRPHFDAGQFVEEWDDEAA 256

Query: 203 ----AGYRYGRQIADDYLTQLGQGEEQVARWLEAEND 235
                 Y+ G +    Y             +      
Sbjct: 257 RKGYCLYKMGCKGPTTYNACSTVRWNGGVSFPIQSGH 293


>UniRef50_A7I7C9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=cellular
           organisms RepID=A7I7C9_METB6
          Length = 172

 Score =  163 bits (412), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 85/168 (50%), Gaps = 1/168 (0%)

Query: 1   MSNLLGPRDANGIPVPMTVDESI-ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATL 59
           +S +LG +    +PV     E I   ++  +  +  RS  +  +D G  N  EIEI    
Sbjct: 5   VSCMLGKKVTGPLPVRDEELERIGREIRREINARFGRSLAIRELDAGSDNAAEIEINNLS 64

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
           +  +D ERFGI  V SPRHAD+LL TGA+T  M   A + + + P PK  ++ G     G
Sbjct: 65  NAYYDVERFGISFVASPRHADVLLVTGAITCNMAIAAQKTYDAMPSPKFVVAVGDDACDG 124

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
           GI+   Y V GG D I PVD+ IPG PP P   L G    +    ++ 
Sbjct: 125 GIYKGTYAVLGGADAIFPVDLKIPGNPPAPIQILTGLLALMRSAGKRT 172


>UniRef50_B8FWY3 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Desulfitobacterium
           hafniense RepID=B8FWY3_DESHD
          Length = 375

 Score =  162 bits (411), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 74/289 (25%), Gaps = 57/289 (19%)

Query: 19  VDESIASMKASLLKKIK----RSAYVYRVDCGGCNGCEIEIFATLSP------------L 62
           +   I+ +   L K +         +  V+ G C G  I +    SP             
Sbjct: 17  LGNFISLVTPELEKALAQGEINKLPIIMVETGTCTGDSISLDNIWSPTLSDIFTNITEWR 76

Query: 63  FDA--------ERFGIKVVPSPRHAD--ILLFTGAVTRAMRSP--------------ALR 98
           +D           + + +      A   +LL  G++ R                      
Sbjct: 77  YDWTMMQSQGELAYDVLLEIEKNQAHEFVLLVQGSMIRRDGGHYNYAGLENGQLITGLDL 136

Query: 99  AWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPV--DVYIPGCPPTPAATLY 154
             +     K  ++ G C   GG            G   I+P    + + GCP  P   + 
Sbjct: 137 VRRLGLKAKYVVAVGHCATYGGPVAGYPNPTQSTGVQNILPERRVINVSGCPAHPDWIMG 196

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA----RRLAGYRYGRQ 210
                    E ++     G       E +H +  +         A    ++   YR G +
Sbjct: 197 TLLHLALYGEPELE--KFGRPKMFFGETIHNNCPRRRYYDQGIFATDIGQKECLYRVGCK 254

Query: 211 IADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHVVEEA 252
               Y     +       W    N        P   +++        + 
Sbjct: 255 GPVTYADCPIRRWNDHYNWPIGCNSPCIGCTEPGYPDLMEPFTAHFPDI 303


>UniRef50_C0QR84 NADH-quinone oxidoreductase chain b (Nadh dehydrogenasei, chain b)
           (Ndh-1, chain b) n=1 Tax=Persephonella marina EX-H1
           RepID=C0QR84_PERMH
          Length = 181

 Score =  162 bits (411), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 2/176 (1%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHAD 80
             I       +    R   ++    G    C IE+  T +  FD +R GI    SPR +D
Sbjct: 7   NGIILTTVEEVLSWGRRNSLWPASVG-LACCAIEMMHTAASRFDTDRLGIIFRGSPRQSD 65

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
           +L+  G V   +       +   PDPK  I+ G C ++GG F   Y    G D+I+PVDV
Sbjct: 66  VLIVAGTVVNKVAPMLKLIYDQMPDPKWVIAMGGCSSAGGPFP-TYATLQGVDRIIPVDV 124

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD 196
           Y+PGCPPTP A L+G       ++ K   +   E+  +        +    +  + 
Sbjct: 125 YVPGCPPTPQALLWGILELQKKIKAKKEGKVWEEIPVREVPTASQPIPIKEKSPLG 180


>UniRef50_C8W241 Hydrogenase, small subunit-like protein n=1 Tax=Desulfotomaculum
           acetoxidans DSM 771 RepID=C8W241_DESAS
          Length = 236

 Score =  162 bits (411), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 97/159 (61%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           +G  +   +  P + ++   +++  + K   RS ++  VD G CNGC+ EI +  +P++D
Sbjct: 78  IGETEVPVLTAPASAEDLGRALREKIKKICHRSLHIRYVDAGACNGCDFEINSMTNPVYD 137

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD 124
            +++G+  V SPRHAD+LL TG VTR +     + +++ P P + ++ GAC   GG+F +
Sbjct: 138 IQQYGVDFVASPRHADMLLVTGVVTRNLEIALHKTYEACPRPALVVAVGACACGGGVFKE 197

Query: 125 LYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
            Y   GG DK +PVDVY+PGCPPTPA  + G   A+G L
Sbjct: 198 AYASGGGVDKFLPVDVYVPGCPPTPAQIIKGILTAIGRL 236


>UniRef50_A3PKI1 NADH-quinone oxidoreductase subunit B 2 n=6 Tax=Proteobacteria
           RepID=NUOB2_RHOS1
          Length = 205

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 9/211 (4%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           MS  +G R     P        + +    L+    R   ++  + G  + C +E+   L+
Sbjct: 1   MSWTIG-RPDAEAPEDRMAASHLFTRLDDLV-AWSRKHSLWPFNFG-LSCCYVEMATALT 57

Query: 61  PLFDAERFGIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
           P++D  RFG + +  +PR AD+L+ +G V R M  P  R +    +P+  IS GAC NSG
Sbjct: 58  PVYDQARFGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSG 117

Query: 120 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
           G++ D+Y V  G D  +PVDVY+PGCPP P A +    +    +  +        + E  
Sbjct: 118 GMY-DIYSVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKIATEARPLQI-RMGETG 175

Query: 180 AEILHGDMVQPLRVKVDREARRLAGYRYGRQ 210
                  + +       REAR         +
Sbjct: 176 PARPFDPIPRR---DALREARMAVTRLADPE 203


>UniRef50_A9GUX6 NADH-quinone oxidoreductase subunit B 1 n=10 Tax=Bacteria
           RepID=NUOB1_SORC5
          Length = 194

 Score =  162 bits (409), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 4/184 (2%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VV 73
           V    +   A+ +   L    +   +++        C +E  A  SP FD  RFG +   
Sbjct: 13  VMEGSEHGFATTRVDALLNWAKKYSLFQYPF-VTACCGMEYMAMASPRFDMARFGAEVPR 71

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            SPR AD+L   G +++       R ++   DPK  +++G C + GG F+D Y    G D
Sbjct: 72  FSPRQADLLWVVGTISQRQAPALKRIYEQMADPKWVLAFGTCASCGG-FYDNYTTVAGID 130

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE-ILHGDMVQPLR 192
           K++P DVY+PGCPP P A L G  +    + +        +  E PA+   H   +Q   
Sbjct: 131 KVIPCDVYVPGCPPRPEAVLDGLMLLQDKIARGDRTPAIVKPREDPAQTTEHLVTLQRKE 190

Query: 193 VKVD 196
             + 
Sbjct: 191 RSLP 194


>UniRef50_Q39SF9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Geobacter
           metallireducens GS-15 RepID=Q39SF9_GEOMG
          Length = 244

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 79/153 (51%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
           +  P +       +   L +   RS     V  GGCN CE +     +  +D  RFGI+ 
Sbjct: 92  LVHPGSEHHHARPLPPDLRRLFGRSLKFREVSAGGCNACEADTNVLSTIGWDLGRFGIQF 151

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
           V SPRHAD L  TG VT  M    L  +++ PDPKI ++ GAC  +GG + D   V  G 
Sbjct: 152 VASPRHADGLWVTGPVTEHMAKALLTTYEAIPDPKIVVACGACAINGGPYIDTPQVCNGV 211

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           D IVPVD+YIPGCPP PA  L G    L  ++ 
Sbjct: 212 DSIVPVDLYIPGCPPHPATILDGLLRILNKIKG 244


>UniRef50_Q492H7 NADH-quinone oxidoreductase subunit B n=225 Tax=Bacteria
           RepID=NUOB_BLOPB
          Length = 236

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 30  LLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADILLFTGAV 88
            +    R   ++  + G  + C +E+    + + D  RFG + +  SPR AD ++  G  
Sbjct: 49  KIVNWGRGNSLWPYNFG-LSCCYVEMTTAFTAIHDVARFGSEVLRASPRQADFMVIAGTP 107

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPT 148
              M     R +    +PK  IS GAC NSGG++ D+Y V  G DK +PVD+YIPGCPP 
Sbjct: 108 FLKMVPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDLYIPGCPPR 166

Query: 149 PAATLYGFAMALGLLEQKIHA 169
           P A + G  +    + ++   
Sbjct: 167 PEAYIQGLLLLKKSINEERRP 187


>UniRef50_A1RZ48 NADH-quinone oxidoreductase, B subunit n=3 Tax=Thermoprotei
           RepID=A1RZ48_THEPD
          Length = 171

 Score =  161 bits (407), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 1   MSNLLGPRDANGI--PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAT 58
           MS  LG      +           +       L+    +  ++ V     + C  E  AT
Sbjct: 1   MSCPLGFVMVGRLEESARKAAQWLVEKTPIRSLRDWAITFSLWPVHFT-TSCCGAEFAAT 59

Query: 59  LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
            +P FDAERFG     SPR  ++++  G +T+ M   A   +   P PK  I+ GAC   
Sbjct: 60  SAPRFDAERFGFLPFNSPRQTNLMVIEGTLTKKMGEAAKIVYDQMPWPKFVIAMGACAID 119

Query: 119 GGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
           GG+F++ Y +      I+PV+ +IPGCPP P A      M    + +
Sbjct: 120 GGLFYNSYNIVRP-KDILPVEYFIPGCPPRPEAVAQAIIMLQEKVRK 165


>UniRef50_A4J659 NADH-quinone oxidoreductase subunit B n=34 Tax=Firmicutes
           RepID=NUOB_DESRM
          Length = 196

 Score =  160 bits (406), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 14  PVPMTVDESIASM---KASLLKKIKRSAYVYRVDCGGCNGCEIE-IFATLSPLFDAERFG 69
             P  + E   ++       L  + R+  ++ +  G    C IE + A     FD  RFG
Sbjct: 31  AEPAVIGEVARTVSVGPLEKLLNLARANSLWPMGFG-LACCAIEGLMAANMARFDLARFG 89

Query: 70  IK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
            + +  SPR AD++L  G VT+      +R ++   +PK  I+ G+C  SGG F D Y V
Sbjct: 90  YEVMRASPRQADVMLVCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPFVDSYSV 149

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
             G DK++PVDVYIPGC P P A ++GF      +      + 
Sbjct: 150 VPGVDKLIPVDVYIPGCAPRPDAVIHGFMKLKEKIINPEVVKR 192


>UniRef50_P61429 Periplasmic [NiFe] hydrogenase small subunit 2 n=9
           Tax=Desulfovibrio RepID=PHNS2_DESVH
          Length = 324

 Score =  160 bits (406), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 76/301 (25%), Gaps = 58/301 (19%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
           +    + V M +    A   A  L+   R   V  +    C GC   +  ++ P  D   
Sbjct: 28  KFCGIVAVAMGMGPGFAPAVAEALQAKGR-PSVVYMHGAECTGCTEGLLRSIDPFIDILM 86

Query: 68  FGIK----------------------VVPSPRHADILLFTGAVTRAM---------RSPA 96
             +                        + +P    +    GA+              +  
Sbjct: 87  MEVISLDYCETVMAAAGRAAHHALEDALRNPAGY-VCTIEGAIPTRKGGVYGQVGGETML 145

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVPV----DVYIPGCPPTPA 150
               + A   K  I+ G C + GGI        G  G  + +       + I GCPP P 
Sbjct: 146 SLFSRVASGAKAVIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPINIAGCPPNPV 205

Query: 151 ATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA---------RR 201
             +      L     +      G         +H    +      D  A           
Sbjct: 206 NYIGTVVHLLTKGMPE--LDSAGRPKMFYGTTVHDQCERRKHFNADEFAPGFESKEAREG 263

Query: 202 LAGYRYGRQIADDYLTQLGQGEEQVARWLEAEN-------DPRLNEIVSHLNHVVEEARI 254
              ++ G +    Y       +     W            +P   + ++  N  V +   
Sbjct: 264 WCLHKLGCRGPYTY-NNCPTAQFNQVNWPVRAGAPCIGCSEPGFWDALAPFNKDVRQKSD 322

Query: 255 R 255
           +
Sbjct: 323 K 323


>UniRef50_B1KJU9 NADH-quinone oxidoreductase subunit B n=8 Tax=Proteobacteria
           RepID=NUOB_SHEWM
          Length = 213

 Score =  160 bits (406), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 4/204 (1%)

Query: 9   DANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
             +   +   V++++   +   L    RS  ++  + G  + C +E+  + +   D  RF
Sbjct: 12  PTSTQTMQEVVEKNLLVTRLEDLVAWGRSNSLWPFNFG-LSCCYVEMATSFTSRHDIARF 70

Query: 69  GIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
           G + +  +PR AD+++ +G V   M       +    +PK  I  G+C NSGG++ D+Y 
Sbjct: 71  GSEVIRATPREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVICMGSCANSGGMY-DVYS 129

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE-QKIHARGPGELDEQPAEILHGD 186
           V  G D+ +P+D+Y+PGCPP P A +YG  +    ++        P      P EI    
Sbjct: 130 VVQGADRFLPIDLYVPGCPPRPEALMYGLTLLQEAIKDGAPRQARPLNRTITPEEIQAFA 189

Query: 187 MVQPLRVKVDREARRLAGYRYGRQ 210
                  K ++  +          
Sbjct: 190 CRNMRDEKHEQRIKADKLTPPDEV 213


>UniRef50_Q26783 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial n=7 Tax=Trypanosomatidae RepID=NDUS7_TRYBB
          Length = 202

 Score =  160 bits (405), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 12  GIPVPMTVDESIASMKASLLKK-IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI 70
           G   P    +        L +  +  S +       G   C +E+    +  +D +RFGI
Sbjct: 41  GTSKPNNALQYAQMTLHDLTEWCLAYSPWPLTF---GLACCAVEMMHAYASRYDLDRFGI 97

Query: 71  KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
              P+PR A+I++ +G VT  M       +    +PK  IS G+C N GG +H  Y V  
Sbjct: 98  VPRPTPRQAEIIIVSGTVTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLR 157

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           G ++ +PVD +IPGCPP+  + ++        + 
Sbjct: 158 GCERAIPVDFWIPGCPPSAESLVFCLHTLQKKIR 191


>UniRef50_C6X0Z2 NADH-ubiquinone oxidoreductase chain B n=2 Tax=Flavobacteriaceae
           RepID=C6X0Z2_FLAB3
          Length = 185

 Score =  160 bits (405), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 3/154 (1%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-V 72
           P      E   + K S +  + R   ++ +     + C IE  A L+P +DA RFG++  
Sbjct: 14  PPEGFEGEGFFATKLSSVIGMARKYSLWPLPFA-TSCCGIEFMAVLNPTYDASRFGMERN 72

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
             SPR AD+L+  G +++ +     + +    +P+  ++ GAC +SGGIF D Y V  G 
Sbjct: 73  SFSPRQADMLMVCGTISKKLGPVLKQVYTQMAEPRWVVAVGACASSGGIF-DTYSVLQGI 131

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
           DKI+PVDVY+PGCPP P   + G      L E +
Sbjct: 132 DKIIPVDVYVPGCPPRPEQIIEGVMQVQALCEGE 165


>UniRef50_B6GAA3 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GAA3_9ACTN
          Length = 228

 Score =  160 bits (405), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 77/148 (52%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            +S ++   D   CNGC+IE+  ++ PL+D ERFGI    +P+HADI L TG+V      
Sbjct: 5   SKSPWLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINTGNPKHADIFLVTGSVNAQNIE 64

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
                +    +PK+ ++ G C  +GG+F D Y V GG DK +PVDVY PGC   P   + 
Sbjct: 65  VVRHIYDQMLEPKVVVACGICACTGGVFRDCYNVIGGVDKAIPVDVYAPGCAVRPETIID 124

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEI 182
               A+ +L++K      G+        
Sbjct: 125 AVLKAVEILDEKAKLMAAGKDPATAPRK 152


>UniRef50_A8LH34 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Frankia sp. EAN1pec
           RepID=A8LH34_FRASN
          Length = 400

 Score =  160 bits (404), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 70/293 (23%), Gaps = 50/293 (17%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP------ 61
           +   GI   + +   +A   A  L K+ R   V  ++   C G       + +P      
Sbjct: 25  KFCAGITATLALPAQLAPRVAYALDKVDR-PTVIWLEFQDCAGDSEAFLRSRNPSAADLI 83

Query: 62  --LFDAERFGIKVVPSPRHA------------DILLFTGAVTRAMRSPA--------LRA 99
             +   +     +  S   A             +++  G++   +               
Sbjct: 84  LGMISLDYHETVMAASGTAAEKARDDAVAKGGHLVVVEGSIPTGIPGACTIGGKSAEDIL 143

Query: 100 WQSAPDPKICISYGACGNSGGIFHDLYCVWGGT--DKIVP--VDVYIPGCPPTPAATLYG 155
            ++       I+ G C   GGI        G    + +V     V + GCP         
Sbjct: 144 REAVRGAAGIINVGTCSAFGGIPAAGPNPTGAVRVEDVVGGVPVVNLTGCPVNADNLTAT 203

Query: 156 FAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL---------AGYR 206
               L    +               + +H    +         A +            YR
Sbjct: 204 IVHHLT-FGEFPARDRFSRPLFAYGQRIHDTCQRRGHFDAGEFAEQWGDAGHRNGWCLYR 262

Query: 207 YGRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHVVEEA 252
            G +    +             W  A          P   + +S     +   
Sbjct: 263 LGCKGPSTFHNCPSVRFNGGTSWPVAAGHGCVGCSEPGFWDTMSPFYDRLPHV 315


>UniRef50_A4EBM2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
           ATCC 25986 RepID=A4EBM2_9ACTN
          Length = 195

 Score =  160 bits (404), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/141 (42%), Positives = 81/141 (57%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
           K+ RS +V   D   CNGC+IE+ A+L+PLFDAERFG+    +P+HADI L TG+V    
Sbjct: 4   KMSRSPWVIHYDGSSCNGCDIEVLASLTPLFDAERFGVVNTGNPKHADIFLVTGSVNAQN 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAAT 152
                + +    +PK  ++ G C  SGG+F D Y V GG D+ +PVDVY PGC   P   
Sbjct: 64  LPVVRQIYNQMLEPKCVVACGICACSGGVFRDAYNVIGGVDRAIPVDVYAPGCAIRPETV 123

Query: 153 LYGFAMALGLLEQKIHARGPG 173
           +     A G+L+QK      G
Sbjct: 124 IDAIVEACGILDQKEAVMRAG 144


>UniRef50_B0SFT5 NADH-quinone oxidoreductase subunit B n=13 Tax=cellular organisms
           RepID=NUOB_LEPBA
          Length = 186

 Score =  159 bits (403), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 10  ANGIPVPMTV-DESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF 68
              +  P  +  +         + +  +S  ++         C IE  +T    +D  RF
Sbjct: 4   TETLSKPGEMFGDMFQVATLDNVVQWGQSFSLWPYPFA-TACCGIEYMSTACADYDIARF 62

Query: 69  GIK-VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
           G +    SPR AD++L  G +T  M     + +    +PK  IS GAC +SGG+FH  Y 
Sbjct: 63  GAERPSFSPRQADMILVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMFH-TYG 121

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           V  G D+I+PVDVY+PGCPP P A L         ++
Sbjct: 122 VLQGVDRILPVDVYVPGCPPRPEAILDALVKLQKKVQ 158


>UniRef50_Q31DZ5 Ni,Fe-hydrogenase small subunit n=4 Tax=Proteobacteria
           RepID=Q31DZ5_THICR
          Length = 813

 Score =  159 bits (403), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 65/246 (26%), Gaps = 47/246 (19%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFD--------AERFGIKVVPSPRHAD------- 80
               V  ++   C G       T++P  D         +   + +  S  H++       
Sbjct: 539 NKVPVIWLELADCTGNSEAFIKTVNPTIDELILKFISLDYHELLMAASGPHSETRLDQLI 598

Query: 81  -------ILLFTGAVTRAMRSPALRA-----------WQSAPDPKICISYGACGNSGGIF 122
                  IL+  GAV   M    LR             + A      ++ G+C   GG+ 
Sbjct: 599 EEDQGDYILIVEGAVPLGMGGNFLRIGPQGETGEALLKRVAQHASAVMAVGSCAFDGGVV 658

Query: 123 HDLYCVWG--GTDKIVPVD--VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
                  G  G  + +  D  + +PGCP  P   +      + +  +        +    
Sbjct: 659 AAAPNPTGAVGVSEALGRDDIINLPGCPVNPINVVGTLLHYI-MFAEMPELGDNNKPVWA 717

Query: 179 PAEILHGDMVQPLRVKVDREARR---------LAGYRYGRQIADDYLTQLGQGEEQVARW 229
            A  +H +  +          +             +  G +     +        +   W
Sbjct: 718 YAPRVHDNCERRGHYDAGEFVKEWGDEGAKKGWCLFEMGCKGPYADMNCAQMKFNEGTSW 777

Query: 230 LEAEND 235
                 
Sbjct: 778 PVQVGH 783


>UniRef50_C6NZV2 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Proteobacteria
           RepID=C6NZV2_9PROT
          Length = 371

 Score =  159 bits (403), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 70/267 (26%), Gaps = 45/267 (16%)

Query: 12  GIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD------- 64
            +   + +  S+AS+ A  + K +R   V  +    C GC   I  + SP  +       
Sbjct: 34  SLAALLALPPSMASVMAEAISKARRQ-SVIWLSFQECTGCTESITRSHSPTLESLIFEMI 92

Query: 65  -AERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSPA--------LRAWQ 101
             +        S   A+              +++  G++       +            +
Sbjct: 93  SLDYHHTLQAASGEAAEHARLQAMKDNEGKYLVIVDGSIPMGNPGYSAIAGISNHDMLVE 152

Query: 102 SAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVP--VDVYIPGCPPTPAATLYGFA 157
           +A      ++ G C   GGI        G      IV     + +PGCPP P       A
Sbjct: 153 TAKGAAAIVAVGTCATYGGIPMADPNPTGAVPVSDIVKDKPIINVPGCPPIPVVMTGVLA 212

Query: 158 MALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR---------RLAGYRYG 208
             L            G       E +H    +       + A              ++ G
Sbjct: 213 HFLT-FGGIPELDALGRPKSFYGETIHDRCYRRPFYDQGKFAETFDDEAARNGWCLFKLG 271

Query: 209 RQIADDYLTQLGQGEEQVARWLEAEND 235
            +    Y             +      
Sbjct: 272 CKGPVTYNACATTKWNDGTSFPIESGH 298


>UniRef50_C7DI98 NADH-quinone oxidoreductase, B subunit n=1 Tax=Candidatus
           Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI98_9EURY
          Length = 206

 Score =  159 bits (403), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 2/162 (1%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPRHADI 81
            +   ++ + K  RS  ++ +  G    C IE+    +   DAER G      +PR  D+
Sbjct: 42  FSKAVSNGVVKWSRSNSMWPMLFG-LACCAIELMDFGAARIDAERKGYLLFRGTPRQCDV 100

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVY 141
           ++  G VT++M     R ++    PK  ++YG C  +GG +++ Y +  G D+++PVDVY
Sbjct: 101 MIVAGWVTKSMVPRVKRLYEQMASPKYVVAYGECATAGGPWYESYNIVKGIDQVLPVDVY 160

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEIL 183
             GCPP P             +  K+       + E P    
Sbjct: 161 AIGCPPKPENLFAALMKLQEKVGGKVAGSEERTIAENPRRAE 202


>UniRef50_Q0RRW7 NADH-quinone oxidoreductase subunit B n=5 Tax=Bacteria
           RepID=NUOB_FRAAA
          Length = 281

 Score =  159 bits (402), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK- 71
           + +   +   +       L    R + ++    G    C IE+ +T +  +D  RFG++ 
Sbjct: 1   MGLEEKLPGGVLLASVEKLANWSRRSSLWPATFG-LACCAIEMMSTGAGRYDLSRFGMEV 59

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
              SPR AD+++  G V++ M     + +   P+PK  +S G C +SGG+F + Y +  G
Sbjct: 60  FRASPRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMF-NNYAIVQG 118

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
            D IVPVD+Y+PGCPP P   +         +        
Sbjct: 119 VDHIVPVDMYLPGCPPRPEMLMDAIIKLHEKILAGPVTGR 158


>UniRef50_P31884 Quinone-reactive Ni/Fe-hydrogenase small chain n=12 Tax=Bacteria
           RepID=MBHS_WOLSU
          Length = 354

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 71/294 (24%), Gaps = 54/294 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD----- 64
           A  +   +++  +   + A   +   R   V  +    C GC   +  T  P  D     
Sbjct: 16  AGAMTAMLSLPATFTPLTAKAAELADR-LPVIWLHMAECTGCSESLLRTDGPGIDSLIFD 74

Query: 65  ---AERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSP-----------A 96
               E     +  +   A+              +L+  G +                  A
Sbjct: 75  YISLEYHETVMAAAGWQAEHNLEHAIEKYKGRYVLMVEGGIPAGSSEFYLTVGPHGTTGA 134

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVW--GGTDKIV-PVDVYIPGCPPTPAATL 153
             A  ++ +     + G+C + GG+              K+     + +PGCPP+    +
Sbjct: 135 EHARHASANAAAIFAIGSCSSFGGVQAARPNPTNAQPLSKVTNKPVINVPGCPPSEKNIV 194

Query: 154 YGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA---------RRLAG 204
                 + L                    +H    +  R                +    
Sbjct: 195 GNVLHFI-LFGTLPSVDAFNRPMWAYGLRIHDLCERRGRFDAGEFVQEFGDEGAKKGYCL 253

Query: 205 YRYGRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHVVEE 251
           Y+ G +    +         Q   W             P   + +      V  
Sbjct: 254 YKVGCKGPYTFNNCSKLRFNQHTSWPVQAGHGCIGCSEPDFWDTMGPFEEPVAN 307


>UniRef50_C2KSS0 Hydrogenase (Acceptor) n=3 Tax=Bacteria RepID=C2KSS0_9ACTO
          Length = 423

 Score =  159 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 75/297 (25%), Gaps = 55/297 (18%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-- 61
           +  P  AN   +  +  E IA +   +     +   V  +    C GC      +     
Sbjct: 55  VGTPVMANAKALRPST-EHIAKVLGEV-----KKPLVAWLQLQECTGCMESTLRSGGTTV 108

Query: 62  ------LFDAERFGIKVVPSPRHA-----------DILLFTGAVTRAM---------RSP 95
                 L       + +  S   A            IL+  G++             +S 
Sbjct: 109 EEVVLNLLSVNYNELVMAASGEAAEKALEEVNAQDHILVVNGSIPVKDGGIYCTIGGKSA 168

Query: 96  ALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIVP--VDVYIPGCPPTPAA 151
                +SA +  + ++ GAC   G +        G  G D+I+     + + GCPP    
Sbjct: 169 QQVLEESAENASMILAVGACAVYGSVQAARPNPTGAVGVDEIIKDKPVINVAGCPPIGEV 228

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR---------RL 202
                A  L    +       G       + +H    +       +  R           
Sbjct: 229 ITATLAYILTK-GKAPELDAEGRPLFAYGQRIHDSCPRRPHFDAGQFVRTFDDAGAREGW 287

Query: 203 AGYRYGRQIADDYLTQLGQGEEQVARWLEAENDP-------RLNEIVSHLNHVVEEA 252
             Y  G +    +           + W      P          +  +     +   
Sbjct: 288 CLYDVGCKGPSTFSPCPIVQWNLKSGWPIGAGHPCIGCTERDFYDRFTPFYSKLPNV 344


>UniRef50_C7IWD0 Os01g0791600 protein n=3 Tax=Oryza sativa Japonica Group
           RepID=C7IWD0_ORYSJ
          Length = 379

 Score =  158 bits (400), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 8/196 (4%)

Query: 60  SPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSG 119
              FD +R+G+    SPR AD++L  G VT  M    +R ++  P+PK  I+ GAC  +G
Sbjct: 150 GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 209

Query: 120 GIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
           G+F  D Y    G DK++PVDVY+PGCPP P A +      LGL           +    
Sbjct: 210 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLLGLALNLRAYDFVSQEIRA 269

Query: 179 PAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRL 238
             +           + ++   R     +        +  +L +  E         +    
Sbjct: 270 AEDPEFETFYTK-NILLNEGIRAWMAAQDQPHENLIFPEELIRVSEFYGPTGPEASQA-- 326

Query: 239 NEIVSHLNHVVEEARI 254
                    +V + R+
Sbjct: 327 ----QAFTFLVRDQRL 338


>UniRef50_Q12F15 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Proteobacteria RepID=Q12F15_POLSJ
          Length = 181

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/150 (40%), Positives = 83/150 (55%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           I  +   +L  + ++  +  VD G CNGCE+EI A  +P ++ E  GIK V SPRHAD+L
Sbjct: 29  IERIHRDILLILGQALTIRAVDAGSCNGCELEIHALNNPYYNIEGLGIKFVASPRHADML 88

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
           L TG V+R M     R + + P+PK+ ++ G CG +GGIF D Y   G    ++PVDV +
Sbjct: 89  LVTGPVSRHMDEALRRTYDATPEPKLVVAVGDCGCTGGIFGDSYASCGRVANVIPVDVTV 148

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           PGCPP P   L G   A+           P
Sbjct: 149 PGCPPPPIEILRGILTAVRQRRPGTAGDNP 178


>UniRef50_D1U6F3 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfovibrio
           aespoeensis Aspo-2 RepID=D1U6F3_9DELT
          Length = 328

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 75/279 (26%), Gaps = 56/279 (20%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD--- 64
           +    +   M +  + A   A  L    R   V  +    C GC   I  T+ P  D   
Sbjct: 28  KFCGTVAAVMGMGPAFAPKVAEALTSDTR-PDVVWLHNAECTGCSESILRTVEPYIDALI 86

Query: 65  -----AERFGIKV--------------VPSPRHADILLFTGAVTR--------------- 90
                       +              V + ++  + +  G V                 
Sbjct: 87  LDYISLNYHETLMAAAGHAAEKALWDTVAAGKY--VAVIEGGVPTAPAGTANEPGGHGKV 144

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW--GGTDKIVP--VDVYIPGCP 146
              +      +        I+YG C + GG+           G D++ P    + +PGCP
Sbjct: 145 GGHTMLENTTKVVEKALATITYGTCASYGGVQKAAPNPTACKGVDELFPGKPIINVPGCP 204

Query: 147 PTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA------- 199
           P P + +      +     +      G       E +H +  +     +D+ A       
Sbjct: 205 PNPYSLVGTIVYYVTKGVPE--LDSVGRPVAFYGESVHDNCPRQEFFNMDQFAPSFGSEE 262

Query: 200 --RRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
             +     + G +  + Y       +     W      P
Sbjct: 263 ARKGWCLRKLGCRGVETY-NNCPTVKFNQYNWPVQAGHP 300


>UniRef50_C5A2Q7 Formate hydrogenlyase II subunit H (Mhy2H) n=3 Tax=Thermococcus
           RepID=C5A2Q7_THEGJ
          Length = 283

 Score =  157 bits (397), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 34/252 (13%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
           RS YV+ +D G CNGCEIE+F  L+P +DAER G+++  SPRHA  +  TG +TR     
Sbjct: 4   RSLYVFHLDTGACNGCEIELFDILTPYYDAERLGVRLAASPRHAHAMAATGPLTRQAYYA 63

Query: 96  ALRAWQSA-PDPKICISYGACGNSGGIFHDLYCV---------------WGGT------- 132
           A  A ++  P P+I ++ G C  SGGIF++ Y +                GG        
Sbjct: 64  AKEAIKAMPPKPRIIVAIGTCACSGGIFYNGYPIYRRPESGREGQEYPRRGGIFELVQDL 123

Query: 133 ---DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
               + V   VYIPGCPP P   LYG A+ALGL+E+++      E      E+    + +
Sbjct: 124 RDEGEYVGPVVYIPGCPPRPEEILYGVALALGLVEKQVKGEYYTEEVGF--ELPEYPIEE 181

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQV------ARWLEAENDPRLNEIVS 243
            +R+ +    + + GY    ++ +D++  + + +           +     DPR++  + 
Sbjct: 182 RIRLSLRERLKYVVGYFDREKVLEDFMELVAKAKSAEELHGLIQGYCLKNPDPRVSLAMR 241

Query: 244 HLNHVVEEARIR 255
            L       + +
Sbjct: 242 VLEREFLRLKEK 253


>UniRef50_Q1D8S3 NADH-quinone oxidoreductase subunit B n=2 Tax=Cystobacterineae
           RepID=NUOB_MYXXD
          Length = 187

 Score =  157 bits (396), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 76/183 (41%), Gaps = 4/183 (2%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF 63
           +     AN +               S      R   ++         C +E  +  +   
Sbjct: 1   MADADLANIVTTRRDESMGWLQSIVSKGLGWARKYSLFTYPYA-TACCGMEYMSVAASRH 59

Query: 64  DAERFGIKV-VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF 122
           D  RFG +    SPR AD+L+  G +         R ++   +PK  +++G C +SGG F
Sbjct: 60  DISRFGAEFPRFSPRQADLLMVVGTINLKQAPILKRVYEQMAEPKWVVAFGVCASSGG-F 118

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           +D Y V  G D+I+PVDVYIPGCPP P   L G  +    +  ++H R     +  P   
Sbjct: 119 YDNYAVLQGIDRIIPVDVYIPGCPPRPEQVLDGLMLLQDKIGNQVH-RIAEREEANPTAA 177

Query: 183 LHG 185
            H 
Sbjct: 178 RHN 180


>UniRef50_A2BJ94 NAD(P)H-quinone oxidoreductase chain K n=10 Tax=Thermoprotei
           RepID=A2BJ94_HYPBU
          Length = 209

 Score =  157 bits (396), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 2/179 (1%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
                +   +       L     S  ++ V     + C  E  A   P +D+ER G    
Sbjct: 19  AAAKAMKWLLERKPIKSLLDWGISFSLWPVHLT-TSCCGAEFAAVYDPKYDSERLGSLPF 77

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
             PR+ ++LL  G +TR M   A   W+  P PK  I+ GAC  +GGIF++ Y +    +
Sbjct: 78  THPRNTNVLLVEGTLTRKMARAARLVWEQMPWPKFVIAMGACAITGGIFYNSYNIVR-VN 136

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLR 192
           +I+PVD Y+PGCPPTP A           + +        E  +   E++     +  R
Sbjct: 137 QILPVDYYVPGCPPTPEAVANALIKLQEKVRKGEWKPRDIEDKKFLEELMAPHYEKARR 195


>UniRef50_Q24ST9 Formate hydrogenlyase subunit 7 n=2 Tax=Desulfitobacterium
           hafniense RepID=Q24ST9_DESHY
          Length = 155

 Score =  157 bits (396), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 83/141 (58%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH 78
           + E       + L+ +++S ++  +DCG CNGC+ E+ A L+P++D +RFG+  V SPRH
Sbjct: 14  LSEKRLEQGEAHLRSLRQSWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRH 73

Query: 79  ADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPV 138
           ADIL+ TG ++  +   AL  ++  P+PK  I+ G C   GG+F + Y    G  + +PV
Sbjct: 74  ADILMCTGPMSTHLIQAALATYEGTPNPKRIIAVGDCALDGGMFKEAYAAHNGVGEALPV 133

Query: 139 DVYIPGCPPTPAATLYGFAMA 159
           D+ IPGCPP+P   L      
Sbjct: 134 DIKIPGCPPSPDELLKVLLQL 154


>UniRef50_A7BI79 Ni,Fe-hydrogenase small subunit n=2 Tax=Aquificaceae
           RepID=A7BI79_HYDTH
          Length = 345

 Score =  156 bits (395), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 74/271 (27%), Gaps = 50/271 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS--------P 61
           +  +  P T               +K    V  ++   C GC      + S         
Sbjct: 26  SAVLGFPPTSFGQAVKALE-----LKPKPVVIWLEFQDCAGCTESFIRSTSILPSDVLLD 80

Query: 62  LFDAERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSP---------ALR 98
               E     + PS  +A+              IL+  G+V+   +              
Sbjct: 81  YISLEYHETLMSPSGFYAEEAKREAIEKYKGKYILIVEGSVSPRNKGVYCTVSGKSNVEL 140

Query: 99  AWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAATLY 154
             ++A +  + I+ G+C + GGI H      G     +I+     V IPGCPP     + 
Sbjct: 141 LKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGAVPVSQILGDRQVVNIPGCPPISDVMVA 200

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRV--------KVDREARR-LAGY 205
             A  +   +        G       + +H    +              D  AR+    Y
Sbjct: 201 VIAGFVITGKP-PELDSMGRPKTFYGQTIHDRCYRRPFYNAGKLAGSFDDESARKGYCLY 259

Query: 206 RYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
           + G +                  +      P
Sbjct: 260 KLGCKGPITRNACATIRWNGGLSFPIQSGHP 290


>UniRef50_Q7VJP5 Putative uncharacterized protein n=3 Tax=Helicobacter
           RepID=Q7VJP5_HELHP
          Length = 552

 Score =  155 bits (392), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 62/264 (23%), Gaps = 50/264 (18%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSPLFD--------AERFGIKVVPSPRHAD---------- 80
            +  +    C GC         P  +         E     +      A           
Sbjct: 61  RLVWLHLAECTGCSSSFLRLDKPDIESVLLEYITLEYHETIMGAVGFSAKKSLHNTLDKE 120

Query: 81  -ILLFTGAVTRAMRSPA-----------LRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
            IL+  G V+    +                 + A   +   + G C + GG+       
Sbjct: 121 FILVIEGGVSLGNHAHFLTSGADSITGEEECKEVAQKAQAIFAVGTCSSFGGVQAAYPNP 180

Query: 129 WG--GTDKIVPVD-VYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHG 185
               G D  +    + IPGCPP+ A  +      + LL++               + LH 
Sbjct: 181 TQSIGIDSFLSQRIINIPGCPPSEANIIGSILYYI-LLQELPPTDSLHRPIWSYGKNLHD 239

Query: 186 DMVQPLRVKVDREA---------RRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEND- 235
              +  + +                   Y+ G +    +             +       
Sbjct: 240 MCERKAKFESGDFVQSFDDPHLEDGYCLYKVGCKGPYVFNNCPKVKFNAKTSYPIQAGHG 299

Query: 236 ------PRLNEIVSHLNHVVEEAR 253
                 P   +    +   +  + 
Sbjct: 300 CIACSEPDFWDSFGRIEEPLNNSN 323


>UniRef50_B2V8R1 NADH ubiquinone oxidoreductase 20 kDa subunit n=3 Tax=Aquificales
           RepID=B2V8R1_SULSY
          Length = 173

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/137 (39%), Positives = 78/137 (56%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
           +K  + K  + S  +  VD G CN CE EI A  +P +D ERFG+K V SP+HAD ++ T
Sbjct: 32  LKEKIDKYFQGSFAIREVDSGSCNACEYEISALSNPYYDIERFGVKFVASPKHADAIMIT 91

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G +TR M    ++A+++ P+PK  I+ G C   GG F   Y V  G    +P+D++I GC
Sbjct: 92  GCLTRNMYEAVMKAYENVPNPKFIIAVGDCALDGGTFKGSYAVMDGIKDKLPIDIWIKGC 151

Query: 146 PPTPAATLYGFAMALGL 162
           PP P   + G  + L  
Sbjct: 152 PPEPIDIISGLLILLNK 168


>UniRef50_Q2S5J2 NADH-quinone oxidoreductase subunit B n=4 Tax=Bacteria
           RepID=NUOB_SALRD
          Length = 213

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 3/189 (1%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK- 71
                T  +   + +        RS  +  +  G    C IE+     P +D+ RFG + 
Sbjct: 2   AGSSGTNGQGFFTTRVDTFLNWARSNSLMPMPMG-LACCAIEMMGFAGPKYDSARFGSEA 60

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
           +  SPR AD+++  G  +  M     R W    DPK CI+ GAC ++GG+ H  Y V  G
Sbjct: 61  MRFSPRQADLMIVAGWCSYKMSHAIRRVWDQMGDPKWCIAMGACASTGGM-HRCYGVVQG 119

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPL 191
            D  +PVDVYI GCPP P + L+        +  +       E  +              
Sbjct: 120 VDNFLPVDVYISGCPPRPESVLHALMDIQEKIRNEYSVVQDYEFGKARERAPIMPENTNR 179

Query: 192 RVKVDREAR 200
                 + +
Sbjct: 180 FPGQLEKPK 188


>UniRef50_C3XE47 Quinone-reactive Ni/Fe hydrogenase n=1 Tax=Helicobacter bilis ATCC
           43879 RepID=C3XE47_9HELI
          Length = 593

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 70/259 (27%), Gaps = 43/259 (16%)

Query: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD--------AERFG 69
           +V +++      +L+ +     V  +    C GC   +  T +P F+             
Sbjct: 46  SVPKTMLDTCVEILEYMGD-LKVVWLHLQECTGCSESLLRTETPSFEVLLFDIFKIVYHD 104

Query: 70  IKVVPSPR-------HAD-----ILLFTGA---------VTRAMRSPALRAWQSAPDPKI 108
           + +V S         HA+     +LL  G+         +T   R+          + + 
Sbjct: 105 LVMVSSGHGAVAALEHANSHEKYVLLVEGSIPMGFAKDYITLGDRNGYDEISHLIHNAEA 164

Query: 109 CISYGACGNSGGIFHDLYCVWGG--TDKIV-PVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
             + G C + GGI         G    +I     + +PGCPP+    +        L  +
Sbjct: 165 VFAIGTCSSFGGIQSAYPNPTNGHALSEIFEREIINVPGCPPSDKNIVATLLYYY-LFAE 223

Query: 166 KIHARGPGELDEQPAEILHGDMVQPLRVKVDREA---------RRLAGYRYGRQIADDYL 216
                         ++ +H    +                        Y+ G +    Y 
Sbjct: 224 SPSLDTLKRPLWAYSKSVHDLCERKSSFMAGDFVESFDDSNMKEGYCLYKVGCKGPYTYN 283

Query: 217 TQLGQGEEQVARWLEAEND 235
                       W      
Sbjct: 284 NCPKVKFNAKTSWPVQGGH 302


>UniRef50_B9L626 NADH-ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Epsilonproteobacteria RepID=B9L626_NAUPA
          Length = 157

 Score =  154 bits (388), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 23  IASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADIL 82
           +  +         +S ++     G    C +E+ A + P +D ER+G  + P+PR ADI+
Sbjct: 1   MLKVLDFFNYARSKSPWIVHFCSG---CCSLEMLAAMGPRYDWERYGYIMTPTPRQADIM 57

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYI 142
             TG V++ +    LR ++  P+P+  ++ GAC   GG ++D   V     +I+P DV++
Sbjct: 58  FITGLVSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSVSVIKNMTEILPADVFV 117

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIH 168
            GCPP P A + G       +++   
Sbjct: 118 AGCPPRPEAIIAGLEELKEKIKRGEP 143


>UniRef50_C5A4Q2 Membrane bound oxidoreductase, MbxJ subunit (MbxJ) n=11
           Tax=cellular organisms RepID=C5A4Q2_THEGJ
          Length = 194

 Score =  153 bits (387), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 8/189 (4%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCE-IEIFATLSPLFDAERFGIKVVPSPRHA 79
           E         L +  R   ++ V    C GC  IE+    +  +D ERFGI   P+PR A
Sbjct: 11  ELQEFKLFEPLFRWARKKSLWIVAF--CTGCGGIEMPPLATARYDFERFGIMPNPAPRMA 68

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVD 139
           D+ L TG VT       +  ++   DPK  +++G+C  +GG++ D Y V    DK +P+D
Sbjct: 69  DLFLITGYVTPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPID 128

Query: 140 VYIPGCPPTPAATLYGFAMALGLLEQKIHA--RGPGELDEQPAEILHGDMVQPLRVKVDR 197
           V I GC P P A + G    +  +E       +   E  E   +       +  R   ++
Sbjct: 129 VAIAGCMPRPEAVMDGIMEIMRKIENGEADGWKRYRENYEWYRKNQDELFGEGWR---EK 185

Query: 198 EARRLAGYR 206
           +A+R   + 
Sbjct: 186 DAKRWLAWL 194


>UniRef50_Q0W6T1 [NiFe]-hydrogenase, small subunit (EchC-like) n=1 Tax=uncultured
           methanogenic archaeon RC-I RepID=Q0W6T1_UNCMA
          Length = 135

 Score =  153 bits (387), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/133 (47%), Positives = 83/133 (62%), Gaps = 2/133 (1%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           +  IKRS +VY    GGC GC+IE+ A++ P +D ER G+++VPSPR+AD+LL TG V  
Sbjct: 1   MNMIKRSPWVYHAHAGGCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPL 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHD--LYCVWGGTDKIVPVDVYIPGCPPT 148
             +    R +   P+PK  I+ GACG S G+F D   Y + G  DKI+PVDV IPGCPP 
Sbjct: 61  HTKPFLERVYAQTPEPKRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPK 120

Query: 149 PAATLYGFAMALG 161
           P A + G    L 
Sbjct: 121 PEAIMEGIIKVLR 133


>UniRef50_C5CEV5 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=C5CEV5_KOSOT
          Length = 137

 Score =  152 bits (385), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 77/132 (58%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           K +KRS +V+ V    CN C+IEI   L+P +D ERFGIK+V S RHAD+LL TG     
Sbjct: 6   KILKRSLWVFHVSASPCNNCDIEILDMLTPRYDLERFGIKLVGSVRHADVLLVTGMGGCK 65

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           +    +R +  AP P   I+ G C  +G  F + Y   G  D+ VPVD+YIPGCPP P  
Sbjct: 66  VSERVIRIYNQAPKPVFVIAVGTCPVAGATFKESYTRCGPLDRFVPVDLYIPGCPPKPET 125

Query: 152 TLYGFAMALGLL 163
            + G +  LG L
Sbjct: 126 MIAGLSELLGRL 137


>UniRef50_Q24X54 Hup-type Ni,Fe-hydrogenase small subunit n=3 Tax=Desulfitobacterium
           RepID=Q24X54_DESHY
          Length = 362

 Score =  152 bits (385), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 71/273 (26%), Gaps = 45/273 (16%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD--- 64
           +        + + E +A   A  ++       V  +    C GC   + ATL+P  +   
Sbjct: 19  KLMAATTAALGLPEVLAPQAAKAVEAAMEKPPVIWLHGMECTGCSESLLATLNPSIESLV 78

Query: 65  -----AERFGIKVVPSPRHAD-----------ILLFTGAVTRAMR----------SPALR 98
                       +  S   A+           +L+  G+V  +                 
Sbjct: 79  LDTLSIRYHETIMAASGHVAEQAYQDTLDEKFVLVVEGSVPASEATDSYCMVGGKPFRET 138

Query: 99  AWQSAPDPKICISYGACGNSG-GIFHDLYCVWGGTDKIVP------VDVYIPGCPPTPAA 151
             ++A   +  I+ G+C   G GI         G  +++         + +P CP  P  
Sbjct: 139 VLEAAAKAQAVIAVGSCATDGAGIPGACEIKPIGVRELLQKHNIATPVINLPCCPVKPNT 198

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA--------RRLA 203
            +      L                    ++LH +  +  + +             +   
Sbjct: 199 LIGTIVYYLT-FSAVPELDEQARPLIYYGKLLHDNCPRRGQFEAGNFLSDWNDPAQKDYC 257

Query: 204 GYRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
               G +    Y           A +      P
Sbjct: 258 LLLKGCKGPKTYTDCAQVWWNDNANFCINAGSP 290


>UniRef50_Q57936 Uncharacterized protein MJ0516 n=21 Tax=Euryarchaeota
           RepID=Y516_METJA
          Length = 148

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/137 (43%), Positives = 80/137 (58%), Gaps = 1/137 (0%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            KRS +V  V+ GGCNGC+IEI A L+P +D E++GI V  +PR AD+LL TG VT    
Sbjct: 7   RKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 66

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
                 ++  P+PKI ++ GAC  SGGIF + + V GG DK++PVD  IPGCPP P+  +
Sbjct: 67  ERLKEIYEKTPEPKIVVAVGACALSGGIFKEGH-VVGGVDKVIPVDAKIPGCPPRPSEII 125

Query: 154 YGFAMALGLLEQKIHAR 170
                           R
Sbjct: 126 ETILKVAPKAIAMREKR 142


>UniRef50_Q2T5T7 Formate hydrogenlyase subunit 7 n=21 Tax=Bacteria
           RepID=Q2T5T7_BURTA
          Length = 174

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 86/168 (51%), Gaps = 1/168 (0%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           ++    P +      P         ++  +L  + R+  +  +D G CNGCE+E+ A  +
Sbjct: 8   IARTGRPDEPAPAGEP-AWQRDAQPIRQEILDILGRALCIRAIDAGSCNGCELELNALGN 66

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           P ++ E  GIK V SPRHAD+LL TG +T  MR     A+ + P PK+ ++ G C  +GG
Sbjct: 67  PYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAPKLVVAAGDCACTGG 126

Query: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
           +F   Y V G  + +VPVDV I GCPP P   L G   AL  +     
Sbjct: 127 VFAGSYAVCGPVETLVPVDVAIAGCPPRPIDLLRGIRGALERVRTGPR 174


>UniRef50_D0ZEI9 Hydrogenase-1 small subunit n=1 Tax=Edwardsiella tarda EIB202
           RepID=D0ZEI9_EDWTE
          Length = 471

 Score =  151 bits (381), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 66/272 (24%), Gaps = 46/272 (16%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL----- 62
           +  +     + +   +A   A  L+  K    V  +    C  C      +  PL     
Sbjct: 121 KYCSLAATSLGLGAGMAPKIAWALEN-KPRIPVVWIHGLECTCCTESFIRSSHPLAKDVI 179

Query: 63  ---FDAERFGIKVVPSPRHAD--------------ILLFTGAVTRAM---------RSPA 96
                 +     +  +   A+              IL   G               R   
Sbjct: 180 LSLISLDYDDTLMAAAGTQAEAVFDDIITRYHGKYILAVEGNPPLGEQGMFCISSGRPFI 239

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAAT 152
            +  ++A      I++G C + G +             DK++     + +PGCPP P   
Sbjct: 240 EKLKKAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPD-V 298

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA---------RRLA 203
           +      +   ++       G       + +H    +                   +   
Sbjct: 299 MSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYC 358

Query: 204 GYRYGRQIADDYLTQLGQGEEQVARWLEAEND 235
            Y+ G +    Y             +      
Sbjct: 359 LYKMGCKGPTTYNACSSTRWNDGVSFPIQSGH 390


>UniRef50_A5D1L0 Ni,Fe-hydrogenase I small subunit n=1 Tax=Pelotomaculum
           thermopropionicum SI RepID=A5D1L0_PELTS
          Length = 332

 Score =  150 bits (378), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 58/257 (22%), Gaps = 45/257 (17%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-----LFDAERFGIKV---VPS 75
             ++ SL    +    V  +    C GC I +  ++ P     + D             S
Sbjct: 27  PELQESLALAAEGKPPVIWLQGASCTGCSISLLNSVDPAIEKVILDVISLRYHPNISAAS 86

Query: 76  PR------------HAD--ILLFTGAVTRAMR--------------SPALRAWQSAPDPK 107
                         H D  IL+  GA+                   +            K
Sbjct: 87  GHFVAEIMDEMLLSHKDQFILVVEGAIPLKNDGKYCTIAEKNGREITMLKAVQVLGNAAK 146

Query: 108 ICISYGACGNSGGIFHDLYCV----WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
             I+ G C + GGI                      + I  CP  P   L      L   
Sbjct: 147 AVIAAGQCASYGGIPGGAPNPTGVVGVKKVVTKKPVINISLCPMHPDHFLGTVVYIL-KY 205

Query: 164 EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA----RRLAGYRYGRQIADDYLTQL 219
                    G       + +H   ++       R A            G +    Y    
Sbjct: 206 GDIPPLDRYGRPAMFYPKPIHESCLRRPYFDSGRFASFIGDEGCLALLGCKGFVGYADCP 265

Query: 220 GQGEEQVARWLEAENDP 236
            +G      W      P
Sbjct: 266 VRGWNNNVNWCIKAGAP 282


>UniRef50_O33405 Uptake hydrogenase small subunit n=221 Tax=Bacteria
           RepID=MBHS_OLICO
          Length = 360

 Score =  149 bits (377), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 66/272 (24%), Gaps = 46/272 (16%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL----- 62
           +  +     + +  +  S  A  ++   R+  V  +    C  C      +  PL     
Sbjct: 23  KFCSLTATALGLGPAYTSEIAHAMETKPRTP-VLWLHGLECTCCSESFIRSAHPLVKDVV 81

Query: 63  ---FDAERFGIKVVPSPRH-----AD---------ILLFTGAVTRAMR---------SPA 96
                 +     +  +        AD         IL   G                   
Sbjct: 82  LSMISLDYDDTLMAAAGHQAEAALADTIERYKGNYILAVEGNPPLNEDGMFCIIGGKPFV 141

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAAT 152
            +   +A   K  IS+G+C + G +              +++     + +PGCPP     
Sbjct: 142 DQLRYAAKHAKAIISWGSCASHGCVQAARPNPTRATPVHQVITDKPIIKVPGCPPIAEVM 201

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA---------RRLA 203
                  L    +       G      ++ +H    +       +           R   
Sbjct: 202 TGVITYMLT-FGKLPELDRTGRPKMFYSQRIHDKCYRRPHFDAGQFVESFDDEGARRGYC 260

Query: 204 GYRYGRQIADDYLTQLGQGEEQVARWLEAEND 235
            Y+ G +    Y         +   +      
Sbjct: 261 LYKVGCKGPTTYNACSTIRWNEGTSFPIQAGH 292


>UniRef50_D0L1N9 NADH ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Proteobacteria RepID=D0L1N9_HALNC
          Length = 274

 Score =  149 bits (376), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 63/164 (38%), Positives = 89/164 (54%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
            D + +  P T D+ +       L    RS ++  VD G CNGCE EI A L+P ++  R
Sbjct: 108 ADLSRLARPATPDKKLEEKWQKSLAGFGRSLHIRHVDAGSCNGCESEISALLNPFYNLHR 167

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
            G+   PSPR AD+LL TG VT  MR P LR +++ P+P+  ++ G C   GG     Y 
Sbjct: 168 LGVFFTPSPRFADLLLVTGPVTEVMREPLLRTFEAMPEPRWVMALGTCATGGGTNGGGYA 227

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
              G D I+PVD+++PGCPP PAA +    + L    Q++H   
Sbjct: 228 CHQGLDGILPVDIWLPGCPPNPAAIIEALLVLLDRRPQQVHGGR 271


>UniRef50_D1BNB1 Hydrogenase (NiFe) small subunit HydA n=5 Tax=Veillonellaceae
           RepID=D1BNB1_VEIPT
          Length = 379

 Score =  149 bits (376), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 59/270 (21%), Gaps = 50/270 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-------- 61
              + +P T+ ++      +          V  +    C GC      + SP        
Sbjct: 30  TAILGLPPTMLDTFVKAAETTEL-----PTVIWLHGHECTGCSESFIRSSSPFTSDVILN 84

Query: 62  LFDAERFGIKVVPSPRHAD--------------ILLFTGAVTRAMRSPA---------LR 98
           +   E        S    +              IL   G V                   
Sbjct: 85  MISLEYDDTLAAASGAPLEEHLEKIIKEKAGKYILAVEGGVPLDEDGVYCTVGGRTFKES 144

Query: 99  AWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIV----PVDVYIPGCPPTPAATLY 154
             ++A      I YG+C + GGI                      + +PGCPP P     
Sbjct: 145 LLEAAKGAAAIIEYGSCASWGGIQAAKPNPTNTVSVSSVVSGKPIIKVPGCPPIPEVMTG 204

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARR---------LAGY 205
                  L  Q       G   +     +H    +           +            Y
Sbjct: 205 VIMHY-ALFGQIPPLDSQGRPKQFYGNRIHDTCYRRAFFDSGLFVEKFDDDASKSGWCLY 263

Query: 206 RYGRQIADDYLTQLGQGEEQVARWLEAEND 235
           + G +    Y +           +      
Sbjct: 264 KVGCRGPQTYNSCGNLRWWNGLSYPIQSGH 293


>UniRef50_UPI000197A0EB hypothetical protein HcinC1_01015 n=1 Tax=Helicobacter cinaedi CCUG
           18818 RepID=UPI000197A0EB
          Length = 554

 Score =  149 bits (376), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 56/239 (23%), Gaps = 43/239 (17%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSP--------LFDAERFGIKVVPSPRHAD---------- 80
            +  +    C GC         P            E     +     +A           
Sbjct: 61  RLVWLHMAECTGCSESFLRLDKPGVESLLLEYISLEYHETIMGAVGFNAKQCLHDTLKEE 120

Query: 81  -ILLFTGAVTRAMRSPAL-----------RAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
            IL+  G V+    +  L              + A   +   + G C + GG+       
Sbjct: 121 FILVIEGGVSLGENAYFLTSGADSTNGENECLEVARHAQAIFAIGTCSSFGGVQAAYPNP 180

Query: 129 WG--GTDKIVP-VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHG 185
               G    +    V IPGCPP+ A  +      + LL++               + LH 
Sbjct: 181 TQSQGISTFLRQPIVNIPGCPPSEANMIGSLMYYI-LLQEIPPCDSLNRPLWSYGKNLHE 239

Query: 186 DMVQPLRVKVDREA---------RRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEND 235
              +  + +                   Y+ G +                  W      
Sbjct: 240 MCERKAKFESGDFVESFDDERLQDGYCLYKVGCKGPYVANNCPKVKFNAKTSWPVRAGH 298


>UniRef50_Q6C2Q1 YALI0F06050p n=1 Tax=Yarrowia lipolytica RepID=Q6C2Q1_YARLI
          Length = 216

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           S++           P +  +   +     +    R    + V  G    C +E+    +P
Sbjct: 39  SSMPTDFPLPSQQKPNSAVDYTLTTL-DAVANWARQGSFWPVTFG-LACCAVEMMHVSAP 96

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +D +R GI    SPR +DI++  G +T  M     + +   P+P+  IS G+C N GG 
Sbjct: 97  RYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSCANGGGY 156

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPT 148
           +H  Y V  G D+IVPV        P 
Sbjct: 157 YHFSYSVVRGCDRIVPVRRLRSRMSPH 183


>UniRef50_A5FW47 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW47_ACICJ
          Length = 264

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/144 (41%), Positives = 81/144 (56%), Gaps = 1/144 (0%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
           +  +RS +V  VD G CNGCE E+ A  +P ++  R GI   PSPR AD+LL TG VTRA
Sbjct: 122 RGFRRSLHVRHVDAGSCNGCESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRA 181

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAA 151
           M  P  R W++ P P+  ++ G C  SGGI         G ++ +PVD+Y+PGCPP PAA
Sbjct: 182 MLEPLRRTWEAMPAPRWVMASGTCAVSGGIAPGGP-CLSGLEEALPVDLYLPGCPPNPAA 240

Query: 152 TLYGFAMALGLLEQKIHARGPGEL 175
            +    M LG   Q++        
Sbjct: 241 IIEALLMFLGRRAQRVRGGRIDGE 264


>UniRef50_B4U5S1 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Hydrogenobaculum sp.
           Y04AAS1 RepID=B4U5S1_HYDS0
          Length = 320

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 62/252 (24%), Gaps = 46/252 (18%)

Query: 29  SLLKKIKRSAY--VYRVDCGGCNGCEIEIFATLSP-------LFDAERFGIKVVPSPR-- 77
            ++  +K+     V       C  C   +  + SP       L   E   +         
Sbjct: 38  DIINALKQKPRIPVLWFHGLECTCCSESLMRSSSPVFSDMVSLISLEYDDLISASCGENL 97

Query: 78  ---------HAD---ILLFTGAVTRAMRSPA---------LRAWQSAPDPKICISYGACG 116
                          IL   G++T                    ++A   K  I++G+C 
Sbjct: 98  LNYKKKIIEQYKGNYILAIEGSITEFEDGACCMVGGRSFNEELLEAAEGAKAIIAWGSCA 157

Query: 117 NSGGIFHDLYCVWGG--TDKIVP--VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           + G +             D I+     V +PGCPP P          L   ++       
Sbjct: 158 SFGCVQVAYPNPTKSSSVDTIIKNKPIVKVPGCPPIPEVMASVIVYMLLK-DELPPLDSK 216

Query: 173 GELDEQPAEILHGDMVQPLRVKVDREARRL---------AGYRYGRQIADDYLTQLGQGE 223
                     +H    +      ++ A R            Y+ G +    Y      G 
Sbjct: 217 LRPKMFYGMTIHDTCYRKNFYNANKFAERFDDEGSKAGHCLYKLGCKGPSTYNACSSIGW 276

Query: 224 EQVARWLEAEND 235
                +      
Sbjct: 277 YNGLSFPIKSGH 288


>UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus
           profundus DSM 5631 RepID=D2RET0_ARCPR
          Length = 709

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 6/229 (2%)

Query: 30  LLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVT 89
           +LK+      ++ V       C +E+    +  +DAER G       R  ++++  GA+T
Sbjct: 1   MLKEWGTKWSLWPVHL-VTACCGVELAHAYACGYDAERIGSLNYGICRQTNLIIVEGAIT 59

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTP 149
           R M       W+  P+PK  I  GACG  GG+F + Y +    D +        GCPPTP
Sbjct: 60  RKMARVLRITWEQMPNPKFVIVMGACGIKGGLFKNSYHMVRPWDVVPVDVFVP-GCPPTP 118

Query: 150 AATLYGFAMALGLLEQKIHARGPGE--LDEQPAEILHGDMVQPLRVKVDREARRLAGYRY 207
            A + G       +E K       E  ++ +  ++     ++  RV+       +   R 
Sbjct: 119 EALIRGIVALQKKIEGKEDFDKFEEVSIEVEKGKVRKLPPLKEFRVENPAVVPNVERGRD 178

Query: 208 GR-QIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHL-NHVVEEARI 254
              +  +D L        +   +   ++  R  EI++HL    V++  +
Sbjct: 179 DYAKTLEDVLGVRVYTVGKDHYYAFVDDVKRSAEILAHLGFDNVKDVNV 227


>UniRef50_B1L7S0 F420H2 dehydrogenase subunit n=3 Tax=Archaea RepID=B1L7S0_KORCO
          Length = 174

 Score =  148 bits (374), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 2/152 (1%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
                    +       ++    +  ++ V       C  E  A+ +P +DAER G    
Sbjct: 17  SARKAAAWLVNKRPIRDIRDWGIAFSLWPVHFT-TACCGAEFAASAAPKYDAERLGFLPF 75

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
              R  ++L   G +++ M   A+  ++  P+PK  I  GAC   GGIF + Y +    D
Sbjct: 76  IGIRQCNVLFIEGTLSKKMAEAAIWVYEQMPEPKFVIGMGACAIDGGIFWNSYNIVRPMD 135

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
            I+PV+V+IPGCPP P A      M    + +
Sbjct: 136 -ILPVNVFIPGCPPRPEAVAQAIIMLQRKIRK 166


>UniRef50_B8D5A0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Desulfurococcus
           kamchatkensis 1221n RepID=B8D5A0_DESK1
          Length = 337

 Score =  148 bits (374), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 82/204 (40%), Gaps = 8/204 (3%)

Query: 26  MKASLLKKI-KRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           M   + +    RS ++       C+ C  +E    +    D ER+G    PSPR +D+ +
Sbjct: 1   MLERIARWAYARSLWMIHY----CSACGAVEFPPLVMAPLDWERYGYMPTPSPRQSDLYI 56

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
             G +T+      L  ++  P+PK+ ++   C ++GG + D Y  +   D  + V+ ++P
Sbjct: 57  GMGYLTKKTVKLVLNMYRQMPEPKLVLAGCNCTSTGGPYWDSYATYKRLDDFIEVEGWVP 116

Query: 144 GCPPTPAATLYGFAMALGLLEQKIHARGPG--ELDEQPAEILHGDMVQPLRVKVDREARR 201
           GC P P   L         L ++         + D         ++ +  R + + + + 
Sbjct: 117 GCMPMPDDYLSMIEYVRKDLGKRPLNAYVSKIKPDAFKKISEWEELEKQWRKEYEEKIKE 176

Query: 202 LAGYRYGRQIADDYLTQLGQGEEQ 225
            +      +  + Y +   + E+ 
Sbjct: 177 DSSKPVSYEFKETYPSCYEKDEKS 200


>UniRef50_B2UPQ9 Hydrogenase (NiFe) small subunit HydA n=8 Tax=Bacteria
           RepID=B2UPQ9_AKKM8
          Length = 398

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 73/298 (24%), Gaps = 54/298 (18%)

Query: 4   LLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGC--------EIEI 55
           ++       +   ++  + IA   A+L     +   V  +    C GC          EI
Sbjct: 44  MISLMGVATVTGGISNAQEIADKMAAL-----KRPVVIWLQLQECTGCLESTIRSYNEEI 98

Query: 56  FATLSPLFDAERFGIKVVPSP-----------RHADILLFTGAVTRAMRSPA-------- 96
              +          + + PS            R   IL+  G+V                
Sbjct: 99  GDMVLSAVSMPYVELLMAPSGEAANQALEDAIREPHILVINGSVPVNDGGVYCTVAGDTV 158

Query: 97  -LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG--GTDKIV--PVDVYIPGCPPTPAA 151
                  A +    ++ G+C   G I        G  G   I+     + +PGCPP    
Sbjct: 159 ENMLRHCAENASHILAVGSCAYFGSIQAARPNPTGAVGIRDILTDRTVINVPGCPPIGDV 218

Query: 152 TLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK--------VDREARR-L 202
                   L   ++                 +H +  +              D  AR   
Sbjct: 219 ITAVIMYILT-FDRAPECDLESRPLMAYGTRIHNNCPRRAHFDAGQFVNVFDDENARECF 277

Query: 203 AGYRYGRQIADDYLTQLGQGEEQVARWLEAENDP-------RLNEIVSHLNHVVEEAR 253
             Y+ G +  D +             +      P          + ++     +    
Sbjct: 278 CLYKVGCKGPDTFSPCPIVKWNGGVSFPIQSGHPCIGCTELYFFDRMTPFYKTLPNVN 335


>UniRef50_C7MNR7 Hydrogenase (NiFe) small subunit HydA n=4 Tax=Coriobacteriaceae
           RepID=C7MNR7_CRYCD
          Length = 439

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 75/267 (28%), Gaps = 48/267 (17%)

Query: 17  MTVDESIASMKASLLKKIKRSA-YVYRVDCGGCNGCEIEIFATLSP--------LFDAER 67
           +T+ +   +++ S++   +     V  ++   C GC        +P        +     
Sbjct: 40  LTIPQVADALEKSVIGAKEGKLYPVIWIEGASCTGCTEAFAQVETPDPATIVLEMISLNY 99

Query: 68  FGIKVVP---SPRHAD---------ILLFTGAVTRAM---------RSPALRAWQSAPDP 106
                     S   A          IL++ GAV             +       ++AP  
Sbjct: 100 SETLSAAAGYSMEEAKEQTIEAGNYILIYEGAVLEKWGGEALRVAGKPGTEHLLEAAPSA 159

Query: 107 KICISYGACGNSGGIFHDLYCVWG--GTDKIVP------VDVYIPGCPPTPAATLYGFAM 158
              ++ G+C  +GG         G  G +K +         V IPGCP  P   +     
Sbjct: 160 NAVVALGSCAVNGGWMGANPNSAGAVGVEKFLKESGINVPVVNIPGCPANPEWLVAVLVD 219

Query: 159 ALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV---------DREARRLAGYRYGR 209
            + ++ +        +      E +H +  +    +          + EA+    Y  G 
Sbjct: 220 VV-MMNKLPALDYENKPALIFDETIHDNCERRGHFENGEFVYQFGSEEEAKNYCLYAMGC 278

Query: 210 QIADDYLTQLGQGEEQVARWLEAENDP 236
           +                  W      P
Sbjct: 279 RGPQTKANCGIVRYNNRRSWCVEAGAP 305


>UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea
           RepID=Q64DY8_9ARCH
          Length = 788

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 2/136 (1%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
           L++      ++       + C +E+  T +  +D ER G   +   R A+ ++  G +TR
Sbjct: 21  LRRWATKWSLWPCHFL-TSCCGVELAHTGACGYDMERLGTLNMGISRQANFIMVEGTITR 79

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
            M       W+  PDPK     G CG  GGIF + Y +      IVPVD +IPGCP TP 
Sbjct: 80  KMARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRP-SDIVPVDFFIPGCPITPE 138

Query: 151 ATLYGFAMALGLLEQK 166
           + L G       +E +
Sbjct: 139 SLLRGVRAVQEKIEGR 154


>UniRef50_A0L9R6 Membrane bound protein complex subunit mbxJ n=1 Tax=Magnetococcus
           sp. MC-1 RepID=A0L9R6_MAGSM
          Length = 213

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 5/154 (3%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIK 71
               +   E +  ++   L    RS  ++ +  G   GC  IE+   ++P FDA R+G++
Sbjct: 30  ATPTVQTGEYLQIVED--LFNWARSNSIWVLGFG--TGCGAIEMRPLMTPRFDAYRYGVQ 85

Query: 72  VVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGG 131
              +PR +++ + +G ++       +RA++    PK  +  G+C  +GG++ D Y     
Sbjct: 86  WRATPRQSNLFIVSGYLSVKTLKRVVRAYEQMQSPKYVMGLGSCTINGGMYWDSYNTIKQ 145

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
            D  +PVD+Y+ GC P P A L G      ++ +
Sbjct: 146 LDDYLPVDLYVTGCMPRPEALLSGIEALKKIIRE 179


>UniRef50_A1RWL1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Thermofilum
           pendens Hrk 5 RepID=A1RWL1_THEPD
          Length = 245

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/231 (36%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFT 85
            K      +KRS Y+ RVD G CNGC+IE+F  L+P FD ER G+K+V SPR AD++L T
Sbjct: 5   AKQKAYDALKRSVYLLRVDSGSCNGCDIEVFDALTPYFDVERLGVKLVLSPRMADVILVT 64

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           G VTR         +++AP P + ++ GAC   GGI++D Y   GG DK++PVDVYIPGC
Sbjct: 65  GPVTRQFLPVLKATYEAAPKPCVVVACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGC 124

Query: 146 PPTPAATLYGFAMALGLLEQKIHARGPGELDE-QPAEILHGDMVQP---LRVKVDREARR 201
           PP P A L+G A+AL +LEQK+         E     +   +       L   +  E  +
Sbjct: 125 PPRPHAILHGVAVALDILEQKVKRSETKADAESFKPALPSLEGAINSWELYRALKLELYK 184

Query: 202 LAGYRYGRQIADDYLTQLG--QGEEQVARWLEAENDPRLNEIVSHLNHVVE 250
             GYR G ++  D L      +  +  A   E     + ++  + +   V 
Sbjct: 185 HLGYRIGYRVLCDLLRISKGSKDLDDFAAKAEKAVSEKYHD--ARITEAVR 233


>UniRef50_B8HZS9 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Clostridium
           RepID=B8HZS9_CLOCE
          Length = 299

 Score =  146 bits (369), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 71/264 (26%), Gaps = 42/264 (15%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLF--------D 64
                T  E    +K  + +       +  ++  GC+G  I +    +P F        +
Sbjct: 11  AARLKTARELFDRVKDKISEGTLMRRNLVWLELTGCSGNIISLLDGANPDFKYLISQMTN 70

Query: 65  AERFGIKVVPSPRHA---------D--ILLFTGAVTRAMR--------------SPALRA 99
                  V      A         D  IL   GAV                   +     
Sbjct: 71  FLYDNSLVAAEGEKAMEKLMGSIGDEYILAVEGAVATKNNGMYNVIGRWQGKPVTALNAI 130

Query: 100 WQSAPDPKICISYGACGNSGGIFHDLYCV--WGGTDKIV-PVDVYIPGCPPTPAATLYGF 156
                     I+ GAC + GG+               I+    + +PGCP  P   +   
Sbjct: 131 KLLGEKASYVIALGACASHGGVSAAKPNPSDCVSVQSILNRKVIKLPGCPCHPDWFMGTL 190

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL----AGYRYGRQIA 212
           A  L  L  +             + ++H    +         A++L      ++ G +  
Sbjct: 191 AHIL--LYGEPELDNRDRPVLFYSTLIHDRCPRRSFFDKGIFAKKLGESTCMFKLGCRGP 248

Query: 213 DDYLTQLGQGEEQVARWLEAENDP 236
              +    +   Q   W   ++ P
Sbjct: 249 VTRIDCPIRKWNQYVNWPVEDDTP 272


>UniRef50_A6Q6W5 Ni-Fe hydrogenase, small subunit HycG n=3 Tax=Epsilonproteobacteria
           RepID=A6Q6W5_SULNB
          Length = 168

 Score =  145 bits (367), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 73/151 (48%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
             +   ++     +K ++ KK   S  +  VD G CN CE E  A  +P +D ER GI  
Sbjct: 18  TALDKELEAIKREIKENVKKKFAGSLAIRMVDSGSCNACEAECNALSNPYYDLERLGIYF 77

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
           V SPRHAD++L  G +T  M    L A++  P+PK  I+ GAC      F   + V    
Sbjct: 78  VASPRHADVMLLNGLMTFNMTPHVLDAYKQIPEPKWVITLGACPVMEAPFEKTFAVKAPA 137

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLL 163
              +PV  +IPGCPP P   + G    L  +
Sbjct: 138 ADHLPVAHHIPGCPPEPLEIIRGLLEFLKKI 168


>UniRef50_A5I2W4 Hydrogenase small subunit n=13 Tax=Firmicutes RepID=A5I2W4_CLOBH
          Length = 290

 Score =  145 bits (366), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 67/257 (26%), Gaps = 49/257 (19%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSP---LFDAERFGIKVVPSPRHAD------------ 80
           +      ++  GC+G  I +    +P           +    S   A+            
Sbjct: 33  KKVNAIWLEVTGCSGNIISLLNAENPGLIYILRNIVNLTFNNSLMGAEGEFAYEQFLNTL 92

Query: 81  ----ILLFTGAVTRAMR--------------SPALRAWQSAPDPKICISYGACGNSGGIF 122
               ILL  GAV+                  +       +    K  ++ G C + GGI 
Sbjct: 93  DTEFILLVDGAVSTKENGYYNIIANYRGRPVTALEAIKMAGEKAKYVVTVGTCSSYGGIS 152

Query: 123 HDLYCVWGG--TDKIV-PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQP 179
                  G    D ++    + +PGCP  P   +   A  +   + +      G      
Sbjct: 153 AAKPNPSGSKSVDAVINKEVIKLPGCPCHPDWVVGTLAHLVTYGKPE--LDNKGRPILFY 210

Query: 180 AEILHGDMVQPLRVKVDREARRL----AGYRYGRQIADDYLTQLGQGEEQVARWLEAEN- 234
              +H    +         A++       ++ G +          +       W   +N 
Sbjct: 211 GITIHDSCTRRGFFDKRIFAKKFGEEGCMFKLGCRGPVTKTDCPRRKWNGYVNWPIGDNT 270

Query: 235 ------DPRLNEIVSHL 245
                   R  + +   
Sbjct: 271 NCIGCAQERFPDGMEPF 287


>UniRef50_P13063 Periplasmic [NiFeSe] hydrogenase small subunit n=10
           Tax=Deltaproteobacteria RepID=PHSS_DESBA
          Length = 315

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 58/258 (22%), Gaps = 58/258 (22%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPL--------FDAERFGIKVVPSPRHA------- 79
            + A V  V   GC GC + +   + P            E     +      A       
Sbjct: 37  AKKAPVIWVQGQGCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEI 96

Query: 80  -------DILLFTGAVTR-------------------AMRSPALRAWQSAPDPKICISYG 113
                    LL  GA+                        +        AP     ++ G
Sbjct: 97  AEKFNGNFFLLVEGAIPTAKEGRYCIVGETLDAKGHHHEVTMMELIRDLAPKSLATVAVG 156

Query: 114 ACGNSGGIFHDLYCVWG--------GTDKIVPVDVYIPGCPPTPAATLYGFAM-----AL 160
            C   GGI      V G          +KI  + V +PGCPP P   +            
Sbjct: 157 TCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWSHVLN 216

Query: 161 GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA----RRLAGYRYGRQIADDYL 216
                       G       + +H +     +      A    +       G +    Y 
Sbjct: 217 PTEHPLPELDDDGRPLLFFGDNIHENCPYLDKYDNSEFAETFTKPGCKAELGCKGPSTYA 276

Query: 217 TQLGQGEEQVARWLEAEN 234
               +       W     
Sbjct: 277 DCAKRRWNNGINWCVENA 294


>UniRef50_UPI0001C31273 NADH-quinone oxidoreductase, B subunit n=1 Tax=Conexibacter woesei
           DSM 14684 RepID=UPI0001C31273
          Length = 229

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 4/174 (2%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIK-VVPSPR 77
           V+E + +     +    R   ++    G    C IE+ +      D  RFG +    SPR
Sbjct: 44  VEERVLTTTLDKVTAWARGNSMFPATFG-LACCAIEMMSLPGARLDIGRFGFEAFRASPR 102

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+L+ +G V+  M     R +    +P+  IS GAC +S G+F + Y +    DK +P
Sbjct: 103 QADMLILSGRVSIKMAPIVRRIYDQMLEPRWAISMGACCSSMGVF-NNYALV-PADKFMP 160

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPL 191
           +DV++PGCPP P A  +        +     A      +    E + G   +P 
Sbjct: 161 IDVHVPGCPPRPEALAHAILKLRSKVHGNPPAGWRERYEAVGTEEVVGAADRPG 214


>UniRef50_P69743 Hydrogenase-2 small chain n=130 Tax=Proteobacteria RepID=MBHT_ECO57
          Length = 372

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 71/275 (25%), Gaps = 49/275 (17%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD--- 64
           +    +   M +    A+  A  +   +R   V  +    C GC   +     P  +   
Sbjct: 20  KLCAALAATMGLSSKAAAEMAESVTNPQR-PPVIWIGAQECTGCTESLLRATHPTVENLV 78

Query: 65  -----AERFGIKVVPSPRHAD--------------ILLFTGAVTRAM---------RSPA 96
                 E   +         +              +L+  G++                 
Sbjct: 79  LETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIV 138

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD--KIVP--VDVYIPGCPPTPAAT 152
               ++A      I+ G+C   GG+        G     +++P    + IPGCPP P   
Sbjct: 139 DHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNF 198

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARR---------LA 203
           L   A  +   +                 ++H    +       R A+            
Sbjct: 199 LATVAHIITYGKP-PKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWC 257

Query: 204 GYRYGRQIADDYLTQLGQGEEQVAR--WLEAENDP 236
            Y  G +  + Y       +       W  A   P
Sbjct: 258 LYHLGCKGPETYGNCS-TLQFCDVGGVWPVAIGHP 291


>UniRef50_B6YWP9 NADH dehydrogenase (Ubiquinone), 20 kDa subunit n=4 Tax=Archaea
           RepID=B6YWP9_THEON
          Length = 191

 Score =  144 bits (363), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 90/154 (58%), Gaps = 11/154 (7%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           K S +V+ ++ G CNGC+IEI    +P  D ER GIK+V SPRHAD + FTG +TR    
Sbjct: 3   KNSLWVFHLNSGSCNGCDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLP 62

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI-----------VPVDVYIP 143
             + A ++ P+PK+ ++ GAC   GGI++D Y V GG  ++            P  V+IP
Sbjct: 63  KVIDALKAVPEPKVVLAIGACACGGGIWYDTYSVIGGVKELYRILKEEYNMEPPATVFIP 122

Query: 144 GCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
           GCPP P A +YG A+A G+LE K       E +E
Sbjct: 123 GCPPKPEAIIYGVAVASGMLESKQKKTVYVEPEE 156


>UniRef50_Q21TB3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2
           Tax=Proteobacteria RepID=Q21TB3_RHOFD
          Length = 254

 Score =  144 bits (362), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 74/138 (53%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
             +  +L K+  RS  +  V  GGC+GCE+EI A  +  FD  R+GI +V SPRHAD L+
Sbjct: 114 IKVSKALHKRFGRSLKLRSVSAGGCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALV 173

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP 143
            +G +TR M       W + P+PK+ I+ GAC  SGG+F D   +           +Y+P
Sbjct: 174 LSGPITRNMAQALQICWDAIPEPKLVIAVGACAISGGVFADSDALDRQFLDNFKPALYVP 233

Query: 144 GCPPTPAATLYGFAMALG 161
           GCP  P   + G    LG
Sbjct: 234 GCPAHPLTFISGIMDLLG 251


>UniRef50_B9L8N0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Nautilia
           profundicola AmH RepID=B9L8N0_NAUPA
          Length = 288

 Score =  142 bits (359), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 60/221 (27%), Gaps = 24/221 (10%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLS--PLFDAERFGIKVVP-----SPRHADILLFTGAVT 89
              V  +D   C GC            LF+   F    +        +  D+L+  GA+ 
Sbjct: 4   KLNVIWIDAVTCYGCTHSFLNYKEISSLFEKVNFEYHPLFLSNDLEIKQCDLLIVEGALK 63

Query: 90  RAMRSPALRAWQSAPD----PKICISYGACGNSGGIFHDL--YCVWGGTDKIVPVD--VY 141
                      +         K  ++ G C   GG+F +   Y            D  + 
Sbjct: 64  NNYPRLGYSLNELISKLFFKAKKVLALGTCAVYGGMFGEGLMYNKEQKGHYYKCRDKIIN 123

Query: 142 IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA-- 199
           +PGCPP P    +   M      +KI         +  A   H    +    +   +A  
Sbjct: 124 LPGCPPHPDWIAFVLDMISE--NKKIALDDLNRPKDIFAYTSHMGCTRNEYFEWKIDAEN 181

Query: 200 ---RRLAG-YRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
              +     Y  G Q    + +   +              P
Sbjct: 182 FGTKEGCLFYFQGCQGPFTH-SSCNKVLWNEVSSKPRAGTP 221


>UniRef50_A9BJL8 NADH ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=cellular
           organisms RepID=A9BJL8_PETMO
          Length = 195

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPR 77
           ++++I   +        +S ++       C GC  +E+  T++  FD ER G+  + +PR
Sbjct: 17  LNDTITFWEKIKNIFRGKSLWMLHY----CTGCGAVELPPTMTARFDMERLGMGPMATPR 72

Query: 78  HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
            AD+LL TG ++       +  ++    PK  + +G+C  +GGI++D Y V    D  +P
Sbjct: 73  QADVLLITGYLSVKTLRRVIYTYEQMMTPKYLVGFGSCTINGGIYYDSYAVINRLDYYLP 132

Query: 138 VDVYIPGCPPTPAATLYGFAMA--------LGLLEQKIHARGPGE 174
           VD+Y+ GC P P A +  F               ++ +       
Sbjct: 133 VDLYVAGCMPRPEAIMNTFKTLENMITKGEANGWKKYVENYDWYR 177


>UniRef50_A1HLY8 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Thermosinus
           carboxydivorans Nor1 RepID=A1HLY8_9FIRM
          Length = 325

 Score =  142 bits (357), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 78/296 (26%), Gaps = 54/296 (18%)

Query: 8   RDANGIPVPMTVDESI-ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP----- 61
           R        + +   + A +  +          V  +  G C+GC + +  +++P     
Sbjct: 11  RLCGATGAALGLSNVLHAEIVEAFSGPAAGHPPVVWLQGGSCSGCSVSLLNSVAPDIGKV 70

Query: 62  ---LFDAERFGIKVVPSPRHADI--------------LLFTGAVTR-------------- 90
              +   +     +  +   A                L+  GAV                
Sbjct: 71  LTDIISLKFHQTLMAAAGEPAMAVLDEVRARYAGQYYLVVEGAVPVAAGRHTATLGEHNG 130

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW--GGTDKIVP--VDVYIPGCP 146
                A R  Q A   K  ++ G C   GGI               +V     V +PGCP
Sbjct: 131 QPVPFADRVRQMAAKAKAVMAVGTCAAYGGIPAAGVNPTASKAVSAVVRGTPLVNVPGCP 190

Query: 147 PTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL---- 202
             P   L      +     +              + +H    +       R A++L    
Sbjct: 191 IHPDWVLGTLLHLIRYGMPE--LDKLQRPLMFFGKSIHDICERRPDFDQGRFAKKLSEPG 248

Query: 203 AGYRYGRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHVVEE 251
             Y+ G +    +     +     A W    N        P   +  +     ++E
Sbjct: 249 CLYKLGCKGPMAFGDCAERKFNNGANWCVGANSPCLSCTGPEFPDASAPFFVKIKE 304


>UniRef50_B2TM84 [Ni/Fe] hydrogenase, small subunit n=2 Tax=Clostridium botulinum
           RepID=B2TM84_CLOBB
          Length = 313

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 70/259 (27%), Gaps = 45/259 (17%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP--------LFDAERFGIKV 72
           E I      +  + K       ++  GC G  I +  +  P        L +   FG   
Sbjct: 34  EMIDKATEEIKARNKEKINAIWLETSGCFGEVISLLNSEMPDLPFVLKNLVNMTFFGSIC 93

Query: 73  VPSPRHA----------D---ILLFTGAVTRAMR--------------SPALRAWQSAPD 105
                 A          D   ILL  GA+                   +      Q+A  
Sbjct: 94  GDQGEKAYERILDTLNSDKEYILLVCGAIPINADGLYTVLATYQGRKITAMELVKQAAQK 153

Query: 106 PKICISYGACGNSGGIFHDLYCVWGGT---DKIVPVD-VYIPGCPPTPAATLYGFAMALG 161
            K  IS G C   GG       V       + ++  D + IPGCP  P  TL      + 
Sbjct: 154 AKYIISIGTCACYGGPTAAKPNVSQALSVKEYLMRNDIINIPGCPANPVWTLGTVGYLIN 213

Query: 162 LLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL----AGYRYGRQIADDYLT 217
                I     G       + +H    +         A++L      Y  G +     + 
Sbjct: 214 YGT--IDLDEEGRPVAFYGKTIHEICPKRKFFDKGIFAKKLGNPECLYELGCKGPITKVY 271

Query: 218 QLGQGEEQVARWLEAENDP 236
                  Q   W   +  P
Sbjct: 272 CPISRWNQSDNWPIGDRTP 290


>UniRef50_C1XWY8 Ni,Fe-hydrogenase III small subunit n=1 Tax=Meiothermus silvanus
           DSM 9946 RepID=C1XWY8_9DEIN
          Length = 290

 Score =  140 bits (353), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/189 (32%), Positives = 81/189 (42%), Gaps = 11/189 (5%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFG 69
               P P T  E      A              V  G     + E+    +P  D  RFG
Sbjct: 111 VEPTPPPPTRAELHLPTLA-----------FREVSAGNTGLDDTEVALAGNPFHDMSRFG 159

Query: 70  IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
             VV SPRHAD LL TG V++ MR    R +Q+ P+PK  ++ G     G IF +   V 
Sbjct: 160 FSVVASPRHADALLVTGPVSQNMREALWRTYQATPEPKGVVAVGNEAIGGEIFAESAAVV 219

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
           GG D++VPVDVY+PG P  PA+ L+G  +  G  +Q +      E   Q      G    
Sbjct: 220 GGVDQVVPVDVYVPGSPARPASILHGLLLLSGQTQQVLVGGRLHEERTQVVSSEAGVEAS 279

Query: 190 PLRVKVDRE 198
             R +   E
Sbjct: 280 SRRAERGEE 288


>UniRef50_A4WJL4 NADH-quinone oxidoreductase, B subunit n=6 Tax=Thermoproteaceae
           RepID=A4WJL4_PYRAR
          Length = 196

 Score =  140 bits (352), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 2/143 (1%)

Query: 25  SMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLF 84
             K   +        ++ V     + C +E+  T  P FDAER+G+    + R ++++L 
Sbjct: 19  KAKLEKIFNWGVRWSLWPVHL-VTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILV 77

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            G +TR M       ++  P+PK  ++ GAC   GG+F + Y V    D +VPVDVYI G
Sbjct: 78  EGTITRKMAKVLKMVYEQMPEPKFVLAMGACAVRGGLFWNSYHVVQ-VDTVVPVDVYIAG 136

Query: 145 CPPTPAATLYGFAMALGLLEQKI 167
           CPPTP A +  F M    ++ K 
Sbjct: 137 CPPTPEAVVRAFIMLHNKIKGKP 159


>UniRef50_B8IYV4 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Desulfovibrio
           RepID=B8IYV4_DESDA
          Length = 254

 Score =  140 bits (352), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 78/154 (50%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER 67
           R+   I     V +             +RS  + +V   GCN CE +     + +FD  R
Sbjct: 101 REDLLIVPGKPVTQPATPPVPGKFAIFRRSLKLRQVSAAGCNACEADCNVLGTLVFDLPR 160

Query: 68  FGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYC 127
           FGI  V SPRHAD ++ TG V+  MR  A+  + + P+P++ ++ GAC  SGG+F D   
Sbjct: 161 FGIDFVASPRHADGIVLTGPVSENMRLAAIDTYNATPEPRLVVAVGACAISGGLFRDAPQ 220

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALG 161
              G   I+PVD+++PGCPP P   L G  M   
Sbjct: 221 CNNGIADILPVDLFVPGCPPNPWTILDGLLMLRE 254


>UniRef50_B8D1R7 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Halothermothrix
           orenii H 168 RepID=B8D1R7_HALOH
          Length = 334

 Score =  139 bits (351), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 54/261 (20%), Gaps = 45/261 (17%)

Query: 19  VDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL--------FDAERFGI 70
           +   I  +         +   V  ++        I    T  P          D      
Sbjct: 21  LSREILRVVRDFRSNNGKKLPVIWIETNDSGDNNISFMNTTYPYLDQVFEDIIDLYYSNT 80

Query: 71  KVVPSPRHAD--------------ILLFTGAVTRAMR--------------SPALRAWQS 102
            +      A                L+  GA+                   +        
Sbjct: 81  FMAAQGEDAYQILKKVALREKREFTLVVEGAIPLKANGRYNITFITDEGPVTAVELVRWL 140

Query: 103 APDPKICISYGACGNSGGIFHDLYCVWGGT---DKIVPVDVYIPGCPPTPAATLYGFAMA 159
               K  ++ G C + GG       + G     D +    + + GCP  P   +   A  
Sbjct: 141 GELAKYAVAVGTCASFGGASAASPNITGSVALGDVLDRQIINVSGCPINPDWFVGTLAHL 200

Query: 160 LGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL----AGYRYGRQIADDY 215
              +         G  +      +H    +         A  L      +  G       
Sbjct: 201 Q--MYGLPDLDRLGRPELFYQFTVHRHCQRRSYFDDGNFAEELGDIECMFSQGCVGPRTG 258

Query: 216 LTQLGQGEEQVARWLEAENDP 236
                +  +    +    N P
Sbjct: 259 ADCPYRLWDNHVSYPIKVNTP 279


>UniRef50_Q58591 F420-non-reducing hydrogenase vhu subunit G n=13
           Tax=Methanococcales RepID=VHUG_METJA
          Length = 288

 Score =  139 bits (350), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 62/237 (26%), Gaps = 45/237 (18%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVPS-------PRHADILLFTGAVT 89
             V  +   GC+GC I +      L +      I   P        P   D+ L  G + 
Sbjct: 6   VKVGMIQLCGCSGCHISLLDLHDKLLEVLPNLEIVYAPIIADPKEIPEGIDVFLVEGGIR 65

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL------------YCV--------- 128
                      +     KI I++G C   GGI                Y           
Sbjct: 66  NEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKEELLNYVYSTDSTENKGEI 123

Query: 129 -----------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
                             + VD  IPGCPPTP          L   E K+  +   +   
Sbjct: 124 PSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIALLNGEEPKLPTKIVCDECP 183

Query: 178 QPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEN 234
           +  E +     +  +   +                  + T+ G G +  +  +    
Sbjct: 184 RKKENV---FPETFKRTHEGRPDPERCLFEQGYTCLGFATRAGCGAKCPSAGVPCRG 237


>UniRef50_C7JEU9 NADH-ubiquinone oxidoreductase 20 kDa subunit n=8 Tax=Acetobacter
           pasteurianus RepID=C7JEU9_ACEP3
          Length = 165

 Score =  138 bits (347), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/137 (40%), Positives = 73/137 (53%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           +    ++ VD GGC GC +E+ A     +D E  G   V SPR+AD+LL TGA+TRAM  
Sbjct: 25  RWPLLLFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAP 84

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
               AWQ+ P PK  I+ G+C   GG+F + Y V GG ++ V +D+ IPGCPP P   L 
Sbjct: 85  VLEAAWQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLN 144

Query: 155 GFAMALGLLEQKIHARG 171
           G     G          
Sbjct: 145 GLCSLFGKQAVPPKEAE 161


>UniRef50_A3DM92 NADH-quinone oxidoreductase, B subunit n=1 Tax=Staphylothermus
           marinus F1 RepID=A3DM92_STAMF
          Length = 179

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 5/152 (3%)

Query: 34  IKRSAYVYRVDCGGCNGC-EIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAM 92
             RS  ++ +    C+ C  IE+   +    DAER+GI   PSPR AD+L+  G VT+  
Sbjct: 14  WVRSRSIWMIHY--CSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVIMGYVTKKT 71

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAAT 152
               +R +   P+P+  +    C  +GG++ D Y      D+ +PVDV++PGC P     
Sbjct: 72  LKVLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPGCMPRAEDW 131

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
           L GF      + +           E+P E+  
Sbjct: 132 LQGFLKLRKKISEGRIVNP--RPVEEPGELEE 161


>UniRef50_B1I618 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Clostridiales
           RepID=B1I618_DESAP
          Length = 375

 Score =  137 bits (344), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 72/297 (24%), Gaps = 55/297 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-------- 61
                 P           A+  +++++   +  ++   C+G  + +     P        
Sbjct: 27  TAAGSRPRARSTRAPEPPAADTERLEKHP-LVWLETNTCHGNILSLMNGQHPDFEAIMRE 85

Query: 62  LFDAERFGIKVVPSPRHA-------------D-ILLFTGAVTRAMRSPALRA-WQSAPDP 106
           L D       +      A             D IL+  G V  A          +   +P
Sbjct: 86  LLDVYWTNTLMGAKGHQAIEVLEKVMVERPGDYILVVEGTVPTAAGGRYAHIGLRGNGEP 145

Query: 107 ----KICISY----------GACGNSGGIFHDLYCVWG--GTDKIV-PVDVYIPGCPPTP 149
                  +            G+C   G  F       G      +V    + +PGCP  P
Sbjct: 146 WTAWDAVVELAAAAKHVVAVGSCAAWGLPFGAHPNPTGSKPVSAVVDRTVINVPGCPAHP 205

Query: 150 AATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA----RRLAGY 205
              L   A  +                    E +H    +    +    A         Y
Sbjct: 206 DWILGTLAHLI--WYGVPELDAMNRPVVFYGETIHNLCQRRHYFESGIFAGEIGEPWCLY 263

Query: 206 RYGRQIADDYLTQLG-QGEEQVARWLEAEN-------DPRLNEIVSHLNHVVEEARI 254
           + G +    Y      Q   +   W    N        P   E  +     + + R+
Sbjct: 264 KIGCKGPVTYADCPSRQWCGEHMNWPVGANTPCIGCTSPEFLEHTAPFFEHLPDVRL 320


>UniRef50_B9L9V0 Hydrogenase n=1 Tax=Nautilia profundicola AmH RepID=B9L9V0_NAUPA
          Length = 306

 Score =  136 bits (342), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 68/238 (28%), Gaps = 39/238 (16%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFD-AERF-GIKVVPSPRHAD-------------- 80
              +  +    C+GC +       P+ +   RF  I   P+   +D              
Sbjct: 37  RPDIIWLQALSCDGCSVNFLNAEIPVTEILNRFANIVFHPTIMASDGKEAMDILMNYKSD 96

Query: 81  --ILLFTGAVTRAMRSPALR--------AWQSAPDPKICISYGACGNSGGI--FHDLYCV 128
             IL+  GA+  AM    +           + A + K  ++ G C    GI    ++Y  
Sbjct: 97  NMILVVEGAIPTAMPHACMMGEMFVNDIILKKAKEAKAIVAAGTCATFAGICDMKNMYTK 156

Query: 129 WGGTDKIVP------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
            G     +         V +P CP  P   LY     +   +            +  +  
Sbjct: 157 AGSVKYFLETNNINTPVVNLPTCPMKPKHLLYTLFYYI-KHKSLPPLDMSHRPIKFFSNT 215

Query: 183 LHGDMVQPLRVKVDREAR----RLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
           +H   +     + +  A+    R   ++ G Q        +    E           P
Sbjct: 216 IHERCIYYNDYQQNIFAKKIGDRGCLFKLGCQGPVTKNDCVKSTGEYDKYNCIKSGHP 273


>UniRef50_B5E8B5 NADH ubiquinone oxidoreductase 20 kDa subunit n=13 Tax=Bacteria
           RepID=B5E8B5_GEOBB
          Length = 332

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 4/185 (2%)

Query: 26  MKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS-PLFDAERFGIKVVPSPRHADILLF 84
           M+  + +       ++R++ G CNGC++E+  T +   FD E+ G +    P  ADILL 
Sbjct: 1   MQDQVKETPAEPVRLFRINTGSCNGCDVELAVTAAVDEFDVEQLGCRYTEEPHEADILLI 60

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
           TG +T   R+ ALR +  AP+ K+ ++ G C  SGG+F D Y V G   + +PVD+ +PG
Sbjct: 61  TGPLTVRARNEALRLYAEAPETKVTVAVGVCPVSGGVFRDSYAVDGPVQRYLPVDLNVPG 120

Query: 145 CPPTPAATLYGFAMALGLLEQKIHARG---PGELDEQPAEILHGDMVQPLRVKVDREARR 201
           CPP P A L G A A  L   +              +PA+          R+  D +A  
Sbjct: 121 CPPRPQALLAGIAQARDLWRARSKGVDAVFAAPPLAKPADEPAQQFPIRGRMSFDPKACV 180

Query: 202 LAGYR 206
                
Sbjct: 181 DCRMC 185


>UniRef50_Q978D5 Formate hydrogenlyase subunit 2 n=2 Tax=Thermoplasmatales
           RepID=Q978D5_THEVO
          Length = 222

 Score =  135 bits (340), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 6/153 (3%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV 72
           +P      +             +RS +V+ +D G C  C +E  +  SP +DA R GI +
Sbjct: 64  LPDYKPTGDQRIFTIKKTEDTFRRSFHVFPIDSGACGACNMEFLSIFSPQYDANRLGIFM 123

Query: 73  VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGT 132
           V +PR+AD L+  G +T  M+    RA+++ P+PK+ I+ GAC  +GGI  +        
Sbjct: 124 VNTPRYADALIVMGVMTPGMKEALDRAYEAMPEPKLVIAMGACAVTGGIMGENPLDRE-- 181

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
                 +V I GCPP+P   +     A+    +
Sbjct: 182 ----KYNVEIAGCPPSPYTLIAALNAAMKDKRK 210


>UniRef50_A3ETD3 Putative hydrogenase-3 (HycG) n=3 Tax=Leptospirillum
           RepID=A3ETD3_9BACT
          Length = 169

 Score =  135 bits (340), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 11  NGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGI 70
              P+P         +          S  +  VD G CN CE+E+ A     +  ER GI
Sbjct: 17  ARPPLPPDASAPFLPV--------GGSLSIRHVDAGSCNACELELHAMNGSYYAPERDGI 68

Query: 71  KVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG 130
           + V SPRHAD+LL TG V+  M  P L   ++   PK  ++ G C   GG+F     V  
Sbjct: 69  RFVASPRHADLLLVTGPVSCQMEQPLLDTHEAMASPKTVLAVGDCACQGGVFRGSPAVRN 128

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
           G D + P    +PGCPP+P+  L            K  +R
Sbjct: 129 GVDGLFPEARKVPGCPPSPSDILRALRGLSRPGPGKPPSR 168


>UniRef50_A1SQ82 NADH ubiquinone oxidoreductase, 20 kDa subunit n=15
           Tax=Actinomycetales RepID=A1SQ82_NOCSJ
          Length = 162

 Score =  134 bits (337), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/126 (41%), Positives = 72/126 (57%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           +  S  +  VD G CNGCEIE+     P++DAER+G ++V SPRHAD++L TG VT  M 
Sbjct: 34  LAGSVQIRHVDAGSCNGCEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNML 93

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
            P  R  ++ P P++ ++ G C  + G F   Y V G     V VD+ +PGCPP PAA +
Sbjct: 94  EPLRRTVEATPRPRLVLAVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIV 153

Query: 154 YGFAMA 159
                 
Sbjct: 154 DALRRV 159


>UniRef50_D2RD73 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Archaeoglobaceae
           RepID=D2RD73_ARCPR
          Length = 352

 Score =  133 bits (336), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 67/305 (21%), Gaps = 70/305 (22%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA---- 65
                   T    +      +        ++  ++   C GC I    +  P  D     
Sbjct: 15  MGASTFLTTCKADLVKALEDVKDYW----HICWLNGAACTGCTISFAQSADP--DLVQIL 68

Query: 66  ---------------ERFGIKVVPSP-------------RHADILLFTGAV------TRA 91
                          +      V S              + A IL+  GAV      T  
Sbjct: 69  TEILVGNSGLPIALPDYMETIHVASGTLAEELKERWRQSKRAKILIVEGAVQDEGFCTIH 128

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFH-------DLYCVWGGTDKIV------PV 138
            +       ++A      I+ G C   GGI                G    +        
Sbjct: 129 GKDFREHLKEAAEVADYIIAVGQCATYGGIPGAKPWDGEPNPTGAKGVQDFLYEVGINKT 188

Query: 139 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD-MVQPLRVKVDR 197
            + IP CP  P   +   A  +  +  +      G       + +H +            
Sbjct: 189 VINIPCCPAHPDHIIVTLASLMLGVVPE--LDKYGRPKVFFGKNMHNELCPYRPYYDRGI 246

Query: 198 EA----RRLAGYRYGRQIADDYLTQLGQGEEQVARWLE------AENDPRLNEIVSHLNH 247
                      ++ G +          +       +           +P   +  S    
Sbjct: 247 FITKPGEEGCRFKMGCKGPICNTDCAIRKWNNGTSYCVETNICIGCAEPGWPDKFSPFYA 306

Query: 248 VVEEA 252
            V E 
Sbjct: 307 EVPEL 311


>UniRef50_C8S958 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Ferroglobus placidus
           DSM 10642 RepID=C8S958_FERPL
          Length = 355

 Score =  133 bits (336), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/298 (10%), Positives = 72/298 (24%), Gaps = 57/298 (19%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-LFD-A 65
           +    +     + +  + +  +  +       +  +     + C + +     P L+D  
Sbjct: 10  KALTTLGAAAFLSKYKSFIVEAFEEAKSNDVKLVWLQGQSDSACTVSLLQAADPDLYDAV 69

Query: 66  ERFGIKVVPSPR----------------HADILLFTGAVTRAMRSP-------------- 95
           E   + +   P                   D+L+  G++                     
Sbjct: 70  EELKVGIYFHPTVMPDFGDKAIKVLEEIEPDVLVLEGSIPTGDMEYACTFGERNGKPVTL 129

Query: 96  ALRAWQSAPDPK-ICISYGACGNSGGIFHD------LYCVWGGTDKIVP------VDVYI 142
                +  P  K   + +G+C   GGI               G  + +         V +
Sbjct: 130 VEWLNELIPKTKVAVVGFGSCATYGGIPSAKDFEGKSPTNAVGLYQFLKDKKPAVPVVLL 189

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR-- 200
           PGCP  P   L   A  L  +  K+            ++++H +  +         A+  
Sbjct: 190 PGCPGHPDWLLVTLAAVLLGV--KVDLDDYWRPKWFFSQLIHDNCARRGFYDEGWFAKSF 247

Query: 201 -------RLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEE 251
                      ++ G +    Y                    P     +         
Sbjct: 248 EESDLKYETCLFKLGCRGPMTYAACSETKWNGGVNVCMNAGAP-CIGCMHPGFPDETS 304


>UniRef50_B1ZSE7 NADH ubiquinone oxidoreductase 20 kDa subunit n=19 Tax=Bacteria
           RepID=B1ZSE7_OPITP
          Length = 285

 Score =  133 bits (335), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 1/146 (0%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKI-KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           R+   +  P   +  +A+     L+K+  RS  + +V  GG    E ++    +  +D  
Sbjct: 123 REDLVLGAPGQEEVRLAAALDEKLRKMFGRSLRLRQVSAGGSGAEEADLNVLGTIGWDLG 182

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
           RFGI+ V SPRHAD L+ TG V++ M     + W++ P PKI I+ GA   SGG+F    
Sbjct: 183 RFGIQFVASPRHADGLVVTGPVSKGMELALRKTWEAMPAPKIVIAVGAEAISGGVFAGHP 242

Query: 127 CVWGGTDKIVPVDVYIPGCPPTPAAT 152
            V  G D IVPVD+YIPG PP P   
Sbjct: 243 QVRNGVDAIVPVDLYIPGWPPHPLTI 268


>UniRef50_Q9H3K5 My017 protein n=3 Tax=Eukaryota RepID=Q9H3K5_HUMAN
          Length = 214

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 7/176 (3%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           +    P+     P P +  E + +    L+   +RS  ++ +  G    C +E+    +P
Sbjct: 42  TQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMHMAAP 99

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICIS--YGACGNSG 119
            +D +RFG+    SPR +D+++  G +T  M     ++    PD    +   +G     G
Sbjct: 100 RYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKS-PPRPDAGAALRGLHGELRQRG 158

Query: 120 GIFHDLYCVWGGTDKIVPVDVYI-PGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
            +         G  +      ++ P  P T  A LYG       ++++   +    
Sbjct: 159 RLLPLFLLGGEGL-RPHRARGHLHPRLPTTAEALLYGILQLQRKIKRERRLQIWYR 213


>UniRef50_A4YGN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Metallosphaera sedula DSM 5348 RepID=A4YGN5_METS5
          Length = 203

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 71/152 (46%), Gaps = 8/152 (5%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVV 73
           PV     E++           KRS Y+Y +D G C GC +E+    SP +D  RFGI   
Sbjct: 60  PVFSPTGETLTPRVERSDVTFKRSFYLYPLDAGSCGGCNLELRLISSPQYDMTRFGIFFT 119

Query: 74  PSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTD 133
            +P+HAD LL  G + + M     RA+   P PK+ I  G C  SGG          G  
Sbjct: 120 NTPKHADALLIMGNLGKRMEEVIRRAYDVIPSPKLVILLGTCAISGG--------VTGIP 171

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ 165
             +  DV +PGCPPTPA+ L     A G   +
Sbjct: 172 PDIRGDVIVPGCPPTPASILDALIKAKGGDRK 203


>UniRef50_B5ZJ00 NADH ubiquinone oxidoreductase 20 kDa subunit n=2
           Tax=Gluconacetobacter diazotrophicus PAl 5
           RepID=B5ZJ00_GLUDA
          Length = 166

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 71/128 (55%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
            R   V+ V+ GGC GC +E+ A     +     GI  V +PR A++LL TG +TRAM  
Sbjct: 22  ARPLAVFHVETGGCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAP 81

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
               AW + P+P+  ++ GAC   GG F + Y V GG +    +D+ +PGCPP+PAA L 
Sbjct: 82  VLEAAWHAMPEPRALVAVGACAIDGGPFPENYAVLGGLEGRATLDMTVPGCPPSPAAILA 141

Query: 155 GFAMALGL 162
           G A  L  
Sbjct: 142 GLARVLER 149


>UniRef50_Q1NM22 Ni-Fe hydrogenase, small subunit n=3 Tax=Deltaproteobacteria
           RepID=Q1NM22_9DELT
          Length = 343

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 74/290 (25%), Gaps = 53/290 (18%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS-PLFDAE-R 67
           A G    ++ DE +A   A   +       +  +    C+GC + +  T    + D   R
Sbjct: 31  AAGAAPLLSFDELLA---AEGGENPFPRPNLVWLQGASCSGCSLSLLNTEEITVLDLLTR 87

Query: 68  F-GIKVVPSPRHAD------------------ILLFTGAVTRAMRSPA--------LRAW 100
           F  +   P+   A                   +L+  G +   M                
Sbjct: 88  FSRLLYHPTLAQATGNQVTDLLTKLTTGVEPYLLVLEGGIPAGMPHACLLAHRPFEEWVS 147

Query: 101 QSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDKIVP------VDVYIPGCPPTPAAT 152
           + A     C++ G C   GG+             D+ +         V +P CP  P   
Sbjct: 148 RLAQGADACVAVGTCAAFGGVAAMPGTLTGVVSLDRHLATRDIAVPLVNLPSCPMKPEHL 207

Query: 153 LYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR----RLAGYRYG 208
           +Y      G   +     G G      A  +H    +    +    AR           G
Sbjct: 208 VYTLLHY-GRHRRLPELDGRGRPRRFFANTVHQRCPRYAAFQELDFARHIGEDGCLLELG 266

Query: 209 RQIADDYLTQLGQGEEQVARWLEAENDP--RLN------EIVSHLNHVVE 250
            Q           G      +      P            ++ HL     
Sbjct: 267 CQGPVSNNDCPDLGYNGNLNYCLKAGHPCTGCAGELFPRPVLYHLYDDPR 316


>UniRef50_D2PJN5 NADH ubiquinone oxidoreductase, 20 kDa subunit n=9 Tax=Sulfolobus
           RepID=D2PJN5_SULIS
          Length = 201

 Score =  129 bits (325), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 8/129 (6%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
            KRS Y+Y +D G C GC +E+    SP +D  RF I    +PRHAD L+  G +T  M+
Sbjct: 81  FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               +A+++ P+PK+ I  GAC  SGGI  +           +   V I GCPP P   L
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG--------VPLEAVVEISGCPPNPFTIL 192

Query: 154 YGFAMALGL 162
                  G 
Sbjct: 193 EALMKVKGK 201


>UniRef50_Q58758 Uncharacterized protein MJ1363 n=17 Tax=Euryarchaeota
           RepID=Y1363_METJA
          Length = 151

 Score =  129 bits (325), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 8/139 (5%)

Query: 33  KIKRSAYVYRVDCGGCNGCEIEIFAT-LSPLFDAERFGIKVVPSPRHADILLFTGAVTRA 91
             K+  +V  V  GGCN C+IE+     SP +DAE++ + +  +PR ADIL+ TG VT+ 
Sbjct: 9   ARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKV 68

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFHD-------LYCVWGGTDKIVPVDVYIPG 144
           +     + ++  P+PK  ++ GAC   GG++ +          V G  + I+PVDV +PG
Sbjct: 69  VAESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPG 128

Query: 145 CPPTPAATLYGFAMALGLL 163
           C P P   + G   AL  +
Sbjct: 129 CAPRPEDIIAGIVKALPKV 147


>UniRef50_C8R2V0 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Desulfurivibrio
           alkaliphilus AHT2 RepID=C8R2V0_9DELT
          Length = 305

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 69/282 (24%), Gaps = 54/282 (19%)

Query: 16  PMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL-------FDAERF 68
              + +   +    +  +      +  +    C GC I +    SP        +    F
Sbjct: 20  TKGLSQPARAALNDIDPRT--VPKLLYLQGLSCTGCSISLLQADSPSPLSMITDYSQLVF 77

Query: 69  GIKVVP-SPRHA-------------D-ILLFTGAVTRAMRSP-----------ALRAWQS 102
              +   S   A             D +L   GA+   M                RA ++
Sbjct: 78  HTDLSATSGAQAMELINSFIDGQAGDYVLAIEGAIPAGMPEACIIDHKPFADYLERAART 137

Query: 103 APDPKICISYGACGNSGGIFHDLYCVWGGTD--------KIVPVDVYIPGCPPTPAATLY 154
                  ++ G+C   GGI        G            I    + I GCP  P    +
Sbjct: 138 MSGA---VAIGSCACDGGIPAAEGNPTGAVGLAEFYRNRNINQPVINIRGCPVHPDWVWH 194

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA----RRLAGYRYGRQ 210
                + +    +     G         LH    +    + +  A     R   +R G  
Sbjct: 195 TITHLVLVGNPNLVN---GSPRVFFERRLHELCPRYYDFQEEIFAEKLGDRGCLFRLGCL 251

Query: 211 IADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEA 252
               +     +       W    N P      S      ++ 
Sbjct: 252 GPITFADCPTRWWNGGRTWCVDTNAP-CIGCASPKFARQKDL 292


>UniRef50_D1B297 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Sulfurospirillum deleyianum DSM 6946
           RepID=D1B297_SULD5
          Length = 138

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/130 (40%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 38  AYVYRVDCGGCNGCEIEIFAT-LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
            YVYR++ G CNGC++EI A+ L P F  +  G      P  A+ILL TGA+T       
Sbjct: 5   LYVYRINTGSCNGCDVEILASVLLPKFGFDALGCVYTNDPTLANILLVTGAITARSTPYL 64

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
             A +  P  KI ++ G C  SGG+F D Y + G  D  V VDV I GCPP+P     G 
Sbjct: 65  QAALKQLPSKKIVVALGICPISGGVFRDSYAITGPLDTFVDVDVNISGCPPSPKEIAQGL 124

Query: 157 AMALGLLEQK 166
           A A  L  ++
Sbjct: 125 AQACELWRER 134


>UniRef50_C5U7Y6 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=Euryarchaeota
           RepID=C5U7Y6_9EURY
          Length = 154

 Score =  128 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 10/141 (7%)

Query: 30  LLKKIKRS--AYVYRVDCGGCNGCEIE-IFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
           L+KKI R    +V  V  GGCNGC+IE + A  SP +DAE++ + +  +PR  DIL+ +G
Sbjct: 8   LMKKISRKKCIHVMLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTFNPRETDILIVSG 67

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHD-------LYCVWGGTDKIVPVD 139
            VT+ ++    + ++  P+PK  ++ G+C  +GG++ +          V G  + I+PVD
Sbjct: 68  CVTKFVKESLRKIYEKIPEPKAVVAIGSCALTGGVYKNIGGDLGTSDFVAGPVENIIPVD 127

Query: 140 VYIPGCPPTPAATLYGFAMAL 160
           V +PGC P P   + G   A+
Sbjct: 128 VKVPGCAPRPEDIISGIVKAI 148


>UniRef50_A8A9X3 NADH-quinone oxidoreductase, B subunit n=1 Tax=Ignicoccus
           hospitalis KIN4/I RepID=A8A9X3_IGNH4
          Length = 207

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 16/191 (8%)

Query: 24  ASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILL 83
           A +K +L    + S ++  +   G   C IE+        D ER G+    +PR  D++L
Sbjct: 18  APVKEALKWSRRNSLWLLHL---GIMCCAIEMMQAAFAFHDFERLGVLARATPRQVDVIL 74

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP------ 137
             G V R +     R +   P P+  I  G C  +GG +     V  G  +++       
Sbjct: 75  INGPVNRKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDGIHEVIESLPEEY 134

Query: 138 ----VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM---VQP 190
                 V + GCPP P   L        L+ +   AR P        E            
Sbjct: 135 RKDVHVVNLAGCPPRPEGLLRAILKMEELINEGDLARAPLTRYRLHDEEGSDKKVVDPML 194

Query: 191 LRVKVDREARR 201
                +R+A  
Sbjct: 195 RYAYNNRKAGE 205


>UniRef50_Q2WGH7 NADH dehydrogenase subunit K (Fragment) n=1 Tax=Selaginella
           uncinata RepID=Q2WGH7_SELUN
          Length = 215

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 5/172 (2%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIK-RSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
           R   G+    T D  I +       + +  S+        G + C  E    +    D++
Sbjct: 28  RPTPGVDRAATPDSIIPTTPNDFTNRARLPSSRPPPY---GTSCCFTEFAPLIGSRSDSD 84

Query: 67  RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH-DL 125
           R G     SPR AD+++  G  T  M    +R+++  P+PK  I+ GAC  +GG+   D 
Sbjct: 85  RHGSVPRSSPRQADLIITAGTATTKMAPSLVRSYEQTPEPKHAIAMGACTVTGGMLSTDP 144

Query: 126 YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
           +    G DK +P D Y PG PP P A +         + ++ +     +L E
Sbjct: 145 HSTVRGVDKSIPADTYPPGRPPKPEAIVDATIKPREKVSRETYDNYRDKLRE 196


>UniRef50_UPI0000EC9F96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (NADH-ubiquinone oxidoreductase 20 kDa subunit) (Complex
           I-20kD) (CI-20kD) (PSST subunit). n=1 Tax=Gallus gallus
           RepID=UPI0000EC9F96
          Length = 176

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 8/173 (4%)

Query: 7   PRDANGIP----VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL 62
           P+ +  +P    VP +  E I +    L+   +R A          +     +   L   
Sbjct: 6   PKSSAVVPKKSYVPTSRGEYIVTKLDDLINWARRRAC---FWTECFHCVASNMGYLLWKS 62

Query: 63  FDAERFG-IKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
            +   FG I++      +   L        +      A    P+      + +C N GG 
Sbjct: 63  HERSSFGLIQLTAHMPMSTACLPARPHENHLSPHLTSAAGLGPELCFTNIFCSCANGGGY 122

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       ++++   +    
Sbjct: 123 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRERKLQIWYR 175


>UniRef50_A5FW77 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidiphilium
           cryptum JF-5 RepID=A5FW77_ACICJ
          Length = 164

 Score =  127 bits (319), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 63/139 (45%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
           + RS  V  VD G C GCEIEI A           GI +V   R ADILL TG  TR + 
Sbjct: 22  LGRSLAVRHVDAGSCGGCEIEIAACRRLRGGMAAHGIAMVEDLRAADILLVTGVATRNLA 81

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
               ++      P+  ++ G C   GG+F  +  V GG   ++PVD+ I GCPP P   L
Sbjct: 82  EAVRKSLAGMAPPRFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQIL 141

Query: 154 YGFAMALGLLEQKIHARGP 172
            G    +    ++      
Sbjct: 142 AGLVALVEANAREPRRARV 160


>UniRef50_Q30QL6 Ni-Fe hydrogenase, small subunit n=2 Tax=Campylobacterales
           RepID=Q30QL6_SULDN
          Length = 293

 Score =  126 bits (316), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 38/238 (15%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFA-------------TLSPLFDAERFGIKVVPSPRHAD 80
           +++   +  +    CNG                       P+ D++    ++V +    +
Sbjct: 1   MEKKMRILWLSAITCNGNTHSFLNYPHMEQFLDDFEFIYHPVIDSKYSLQEIVSNEIECE 60

Query: 81  ILLFTGAVT----RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL-YCVWGGTD-- 133
           +L+  GA++    R            +   +  ++ G C   GGIF +  Y    G    
Sbjct: 61  VLIIEGAISEEFQRGGVPIFEIIKNYSKRVQKILTVGTCATFGGIFRESDYKDTAGMHFD 120

Query: 134 ---------KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
                      +   + I GCP  P   +         +   +         E  A  +H
Sbjct: 121 QDRALHNFSDFLDKTISISGCPIHPEVLVNTLYAIKKSV--LLRVDNFLRPKEFYAYTVH 178

Query: 185 GDMVQPLRVKVDREARRL-----AG-YRYGRQIADDYLTQLGQGEEQVARWLEAENDP 236
               +    +   +  +         Y +G Q    +     +              P
Sbjct: 179 NGCTRNEYFEYKVDNHKFGELEGCMFYDHGCQAPFTH-GSCNKILWNEVNSKTRAGVP 235


>UniRef50_A6DAC3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Caminibacter
           mediatlanticus TB-2 RepID=A6DAC3_9PROT
          Length = 140

 Score =  125 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 38  AYVYRVDCGGCNGCEIEIFAT-LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPA 96
             ++R++ G CNGC++EI A+ +S  FD ++ G + + +   ADI + TG VT       
Sbjct: 7   PKIFRINTGSCNGCDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFL 66

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
               ++   P + IS G C  + GIF D Y + G  D  V VDV + GCPP P A L G 
Sbjct: 67  KEVIKNHKKPYVVISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGV 126

Query: 157 AMALGLLEQK 166
             A+ +L++K
Sbjct: 127 KTAIDILKRK 136


>UniRef50_Q8TYW2 Coenzyme F420-reducing hydrogenase, gamma subunit n=2
           Tax=Methanopyrus kandleri RepID=Q8TYW2_METKA
          Length = 305

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 60/236 (25%), Gaps = 46/236 (19%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP---------SPRHADILLFTGA 87
            A +       C GC + +      L D     I++            P H ++ +  G+
Sbjct: 3   KATIATAQLSSCVGCHVSLLDLHEKLLDLLEDAIEIEYCYVLVDQKEIPEHVNVAVIEGS 62

Query: 88  VTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLYCV--- 128
           +          A +      I ++ G C   GG+                F +       
Sbjct: 63  IRN--EEDLEVAEELREAADIVVAVGTCACYGGVHGLANLYQLDDILEWVFKETPTTDDE 120

Query: 129 --------------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
                              +++ VD  +PGCPP P +        L   E ++      E
Sbjct: 121 GETPEEVVPELFGYVRPLPEVIDVDYMLPGCPPKPESIAEVITAILEDREPELPTTNLCE 180

Query: 175 LDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWL 230
               P E     + +                           T  G G    +R L
Sbjct: 181 EC--PREKEDIPIEEIKFRTGQGRPDPDKCLLEQGYPCMGPATVAGCGAACPSRGL 234


>UniRef50_A4YF94 NADH ubiquinone oxidoreductase, 20 kDa subunit n=8 Tax=cellular
           organisms RepID=A4YF94_METS5
          Length = 322

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 57/243 (23%), Gaps = 57/243 (23%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSPLFDAERF----GIKVVPSPRHA--------------- 79
            +  +  G C G  + +     P  D   F     +K++  P  +               
Sbjct: 3   NLLWLQGGACGGNTLSVLNASDP--DILSFLYQNNVKLLWHPSLSQECGRDLKKILESII 60

Query: 80  ------DILLFTGAV--------TRAM---RSPALRAWQSAPDPKICISYGACGNSGGIF 122
                 DILLF G++        T  M   +       + AP     ++ G C + GGI 
Sbjct: 61  EGKINLDILLFEGSIVRGPAGKGTFNMFAGKPMMWWVREIAPQANYIVAVGDCASFGGIP 120

Query: 123 HDLYCVWG--GTDKIVP----------------VDVYIPGCPPTPAATLYGFAMALGLLE 164
                     G                        + + GCP  P   +    + L    
Sbjct: 121 AADPNPTESTGLQFHRKEMSGFLGKDFRCKSGLPVINLSGCPVHPEWLITTLTLILRGEM 180

Query: 165 QKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEE 224
            +             A        +          +   G++ G    D           
Sbjct: 181 NQEMLDEFNRPRIFYATTTQFGCPRQPYFTYKISTKEF-GHKEGCLFFDLGCRGSYTRSS 239

Query: 225 QVA 227
              
Sbjct: 240 CNN 242


>UniRef50_A6QAV6 Ni-Fe hydrogenase, small subunit HupS n=3 Tax=Epsilonproteobacteria
           RepID=A6QAV6_SULNB
          Length = 298

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 57/235 (24%), Gaps = 42/235 (17%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA-------------DI 81
           +    +  +    CNG                 F +   P    A             D+
Sbjct: 4   RNKPKLLWLQSITCNGNTHSFLNHPELFSILSHFELVHHPVLESAYTLENVIKGEVPCDL 63

Query: 82  LLFTGAVTRAMRSPALR-------AWQSAPDPKICISYGACGNSGGIFHDLYC------V 128
           L+  GA                    + A   K  IS G C   GGIF +          
Sbjct: 64  LIVEGA--FKEEGFLKSGVEVSSVLKKYADKAKYIISAGTCATFGGIFKENDPEEISGFC 121

Query: 129 WGGTDKIVPVDVY------IPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
           + G +K    + Y      +PGCP  P    Y   M       K+         E     
Sbjct: 122 FDGEEKTPRYESYASKLISLPGCPIHPRWLSYLLLMIASGN--KVPLDTLHRPVELYGYT 179

Query: 183 LHGDMVQPLRVKVDREA-----RRLAG-YRYGRQIADDYLTQLGQGEEQVARWLE 231
           +H    +    +   +A     +     Y  G Q      +         +    
Sbjct: 180 VHTGCTRNEYFEWKIDAKQFGVKEGCLFYEQGCQGPYTRGSCNKILWNDTSSKTR 234


>UniRef50_D1VJL8 Hydrogenase (NiFe) small subunit HydA n=2 Tax=Actinobacteria
           (class) RepID=D1VJL8_9ACTO
          Length = 416

 Score =  122 bits (307), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 67/318 (21%), Gaps = 83/318 (26%)

Query: 14  PVPMTVDESIASMKASLLKKIKRSAYVYRVDCG-GCNGCEIEIFATLSPLFDAERFG--- 69
           P      E + + +           ++  ++ G  C+G  + + A   P  +    G   
Sbjct: 41  PAEQVAPERVPAWEDQA------PIHLLWINAGLSCDGDSVALTAATQPSIEEIALGALP 94

Query: 70  -----------IKVVPSPRH-----------AD-------ILLFTGAVTR---------- 90
                      I     P             AD       +L+  G++            
Sbjct: 95  GLPKVAVHWPLIDFDSGPEQGADAFLEWFRKADRGELDPFVLVVEGSIPNERINGDGYWT 154

Query: 91  ---------AMRSPALRAWQSAPDPKICISYGACGNSGGI--FHDLYCVWGGTDKIVPVD 139
                       +      + AP     ++ G C   GGI           G    +  D
Sbjct: 155 GFGSDQATGQPITVNAWLDRLAPKALAVLAVGTCATYGGIHAMAGNPTGAMGVPDYLGWD 214

Query: 140 ---------VYIPGCPPTPAATLYGFAMAL---GLLEQKIHARGPGELDEQPAEILHGDM 187
                    V +PGCP  P          L         I               +H   
Sbjct: 215 WKSSAGIPIVCVPGCPIQPDNLSETIVYLLYQASGQAPMIPLDDQLRPRWLFGTTVHDGC 274

Query: 188 VQPLRVKVDREARRL----AGYRYGRQIADDYLTQLGQGEEQVARWLEAEND-------P 236
            +    +  R A          + G            +G                    P
Sbjct: 275 DRAGFYEEGRFAHAYGEPECLVKLGCWGPVVKCNVPKRGWMNGVGGCPNVGGICIACTMP 334

Query: 237 RLNEIVSHLNHVVEEARI 254
              +           A++
Sbjct: 335 GFPDRFMPFMDTPPGAKV 352


>UniRef50_C1SPM4 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Denitrovibrio
           acetiphilus DSM 12809 RepID=C1SPM4_9BACT
          Length = 310

 Score =  122 bits (307), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 60/242 (24%), Gaps = 44/242 (18%)

Query: 37  SAYVYRVDCGGCNGCEIEIFA-TLSPLFD----AERFGIKVVPSPRHA------------ 79
              +  +    C GC   +     +   D      R  +    S                
Sbjct: 40  RPQLVFIQGQSCTGCSTSLMYGNETDFIDFIMKLVRVQVHPNLSLSQGNGYLNMLDEVTS 99

Query: 80  ---DILLFTGAVTRAM--------RSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV 128
               IL+  G++   M                +        ++ G+C   GGI       
Sbjct: 100 AGGHILVLEGSIPAEMKKACMLGEEPLYDALKKHLEKASAVVASGSCSCFGGIPASGANE 159

Query: 129 WGGTD--------KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
            G  D         I    + IPGCP  P   +   A  LG    K+     G   +   
Sbjct: 160 TGAIDIVQYMRETGISKPLIKIPGCPVHPDRLMGTVAYILG--AGKMPDMEDGIPVQYFG 217

Query: 181 EILHGDMVQPLRVKVDR------EARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEN 234
           +++H +  +      D       + +     + G +          +            N
Sbjct: 218 DLIHNNCTRFQYFSQDIYLEDYAKDKHSCLLKKGCRGTITKSDCALRRWNGGVNVCVESN 277

Query: 235 DP 236
            P
Sbjct: 278 AP 279


>UniRef50_C1DUE6 Hydrogenase-2, small subunit n=1 Tax=Sulfurihydrogenibium azorense
           Az-Fu1 RepID=C1DUE6_SULAA
          Length = 312

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 47/234 (20%), Gaps = 50/234 (21%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSPLFD--AERFGIKVVP----------------SPRHA- 79
            +  +    CNG      +    + D       I   P                S + + 
Sbjct: 10  NLVWIQGLTCNGNSHSFLSINDTMLDVFLSNINILYHPMLTSEMEFKDVYKLLLSGKESL 69

Query: 80  DILLFTGAVTRAMRSPALRAWQSAP-------DPKICISYGACGNSGGIFHDLYCVWGGT 132
           + L+  GAV         + +                ++ G C   G           G 
Sbjct: 70  NFLVVEGAVNTKKDEVFFQGFDVFEILNNLKDKSDYILAVGNCACYGNFPALYNENVKGL 129

Query: 133 DKIVP----------------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELD 176
                                  + I GCP  P   +             I         
Sbjct: 130 QYRFKDKGGFLGEDFKTKSGYPIINITGCPAHPEWIVRTILSL--NFGYDIKLDNLNRPK 187

Query: 177 EQPAEILHGDMVQPLRVKVDREARRL-----AG-YRYGRQIADDYLTQLGQGEE 224
           +    + H   ++    +   EA           Y  G +    +         
Sbjct: 188 DFYMYLAHDGCIRNEYFEWKVEAHEFGTKEGCLFYELGCRGPLTHSPCNKILWN 241


>UniRef50_D2ATL3 NADH ubiquinone oxidoreductase, 20 kDa subunit n=10 Tax=Bacteria
           RepID=D2ATL3_STRRD
          Length = 358

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 64/294 (21%), Gaps = 77/294 (26%)

Query: 38  AYVYRVDCG-GCNGCEIEIFATLSPLFDAERFG--------------IKVVPSPRH---- 78
            ++  ++ G  C+G  + + A   P  +    G              I     P      
Sbjct: 20  VHILWINAGLSCDGDSVALTAATQPSIEEIVLGALPGLPKVAVHWPLIDFESGPMQGADV 79

Query: 79  -------AD-------ILLFTGAVTR-------------------AMRSPALRAWQSAPD 105
                  AD       +L+  G++                        + +    + AP 
Sbjct: 80  FIEWFFKADRGELDPFVLVVEGSIPNESIKQEGYWCGFGNNPETGQPMTTSEWLDRLAPK 139

Query: 106 PKICISYGACGNSGGI--FHDLYCVWGGTDKIVPVD---------VYIPGCPPTPAATLY 154
               ++ G C   GGI           G    +  D         V +PGCP  P     
Sbjct: 140 ATAVLAAGTCATYGGIHAMAGNPTGAMGVADYLGWDWRSKAGLPIVNVPGCPIQPDNLSE 199

Query: 155 GFAMAL---GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL----AGYRY 207
                L         I             + +H    +    +  + A          + 
Sbjct: 200 TILYLLYQVAGQAPMIPLDEALRPTWLFGQTVHEGCDRAGYYEQGQFATEYGSPKCLVKI 259

Query: 208 GRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHVVEEARI 254
           G            +G                    P   +           AR+
Sbjct: 260 GCWGPVVKCNVPKRGWMNGIGGCPNVGGICIACTMPGFPDKFMPFMDEPPGARV 313


>UniRef50_D2QHS8 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Spirosoma
           linguale DSM 74 RepID=D2QHS8_9SPHI
          Length = 326

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 65/276 (23%), Gaps = 60/276 (21%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSP-LFDAE-RFGIKVVPSPR------------------- 77
            V  +  G C+G  +       P + D    FG+ ++  P                    
Sbjct: 3   NVLWLQGGACSGNTMSFLNAEEPTVVDLVTDFGVNILWHPSIGLEIGDQVTHLLNDIVSG 62

Query: 78  --HADILLFTGAVTRA-----------MRSPALRAWQSAPDPKICISYGACGNSGGIFHD 124
               DIL++ G++ +             R         +      ++ G C   GGI   
Sbjct: 63  RTQCDILVYEGSIIQGPNGTGTMNYFADRPMQDWVRDLSKVVGYVVAIGDCATWGGIPAV 122

Query: 125 LYCVWG---------------GTDKIVP---VDVYIPGCPPTPAATLYGFAMALGLLEQK 166
                                G+D +       + IPGCP  P                 
Sbjct: 123 APNPSESTGMQFLKKAKGGFLGSDYVSKGGLPVINIPGCPAHPDWITQILVAIATGRIGD 182

Query: 167 IHARGPGELDEQPAEILHGDMVQPLRVKVDREA----RRLAG-YRYGRQIADDYLTQLGQ 221
           +             + +       +      +     R     Y  G +      +    
Sbjct: 183 VLIDEYHRPKTFFTDFVQTGCTNVVSFAQKVDGGFGKRGGCLFYEVGCRGPMTRASCNRI 242

Query: 222 GEEQVARWLEAENDP--RLNEIVSHLNHVVEEARIR 255
              + +      N P     E     + + + +  +
Sbjct: 243 LWNRQSSKTR-ANHPCLGCTEPGFPHHDLEKGSVFK 277


>UniRef50_Q1NRB7 Ni-Fe hydrogenase, small subunit:Twin-arginine translocation
           pathway signal n=1 Tax=delta proteobacterium MLMS-1
           RepID=Q1NRB7_9DELT
          Length = 299

 Score =  120 bits (300), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 73/280 (26%), Gaps = 56/280 (20%)

Query: 18  TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPL-------FDAERFGI 70
            + E +A+    +     +   +  +    C GC I +    SP        +    F  
Sbjct: 21  GLPEPVAAALKEID----QVPKILYLQGLSCTGCSISLLQAASPTPLEMITDYSQLAFHT 76

Query: 71  KVVP-SPRHA--------D------ILLFTGAVTRAMRSP-----------ALRAWQSAP 104
            +   S   A        D       L   GAV   M                RA ++  
Sbjct: 77  DLSSTSGAQAMELINAFIDGEAGEYFLAIEGAVPGTMPRACVIDHQPFASYLERAARTMS 136

Query: 105 DPKICISYGACGNSGGIFHDLYCVWGGTD--------KIVPVDVYIPGCPPTPAATLYGF 156
                ++ G+C   GGI        G           ++ P+ + I GCP  P    +  
Sbjct: 137 GA---VAVGSCACDGGIPAAEGNPTGAIGLREFYRQRELEPLLIDIRGCPIHPDWLWHTI 193

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREA----RRLAGYRYGRQIA 212
              + +    +     G         LH    +    + +  A     R   ++ G    
Sbjct: 194 THLVKVGLPSLVN---GAPQAFFQRRLHELCPRYYDFQEEIFAEKMGERGCLFKLGCLGP 250

Query: 213 DDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEA 252
             +     +       W    N P      S      ++ 
Sbjct: 251 ITFADCPTRWWNGGRTWCIDTNAP-CIGCASPDFARKKDL 289


>UniRef50_Q0BPG7 Formate hydrogenlyase subunit 7 n=1 Tax=Granulibacter bethesdensis
           CGDNIH1 RepID=Q0BPG7_GRABC
          Length = 174

 Score =  120 bits (300), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 1/159 (0%)

Query: 2   SNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP 61
           S+     D   +P   TV   IA  ++S   K+ ++  +  V+ GG + C +E+ A  + 
Sbjct: 10  SHPGLWDDTASLPHAETVAALIARRRSSARPKLGQALSILHVESGGGSACLLELEALRAA 69

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
                R G++ V SP HADILL TG     + S   +AW++ P P+  I+ G      G+
Sbjct: 70  PGLLARHGLRFVTSPLHADILLITGDGCHNLTSAIHQAWEAMPGPRWAIAVGDGAAGDGL 129

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL 160
               Y   G  ++ +P D+ IPG PP     L G    +
Sbjct: 130 LRGSYASTGNMEE-IPFDLVIPGSPPAADTILSGLRALV 167


>UniRef50_UPI000194DF39 PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
           n=1 Tax=Taeniopygia guttata RepID=UPI000194DF39
          Length = 183

 Score =  119 bits (299), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 45/177 (25%)

Query: 2   SNLLGPRDANGIP----VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFA 57
           S++   + +  +P    VP +  E + +    L+   +RS  ++ +  G    C +E+  
Sbjct: 47  SSVQVQKSSAVVPRKSYVPSSRGEYVIAKLDDLVNWARRS-SLWPMTFG-LACCAVEMMH 104

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
             +P +D +RFG+    SPR AD+++  G +T  M             P           
Sbjct: 105 MAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPAL------RKKP---------PC 149

Query: 118 SGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
            G                         CPPT  A LYG       ++++   +    
Sbjct: 150 RG------------------------RCPPTAEALLYGILQLQRKIKREKRMQIWYR 182


>UniRef50_Q6L0U2 Formate hydrogenlyase subunit 7 n=1 Tax=Picrophilus torridus
           RepID=Q6L0U2_PICTO
          Length = 202

 Score =  119 bits (299), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 8/140 (5%)

Query: 21  ESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHAD 80
           + I+ +  S+ KK ++S  +Y +D G C  C  E+F+   P +D  R+ I    +PRHAD
Sbjct: 70  DDISIISGSIDKKFRKSLNIYSIDSGTCGACNSELFSISIPEYDLTRYHIFFTNTPRHAD 129

Query: 81  ILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDV 140
            ++ +G    +M+     A  + P P   I  GAC  SGGI    +         +   +
Sbjct: 130 AIILSGIYNESMKDVIDNALGAMPKPGYLILLGACALSGGIIGSGHE--------IKAVL 181

Query: 141 YIPGCPPTPAATLYGFAMAL 160
            IPGCPP P   L G    +
Sbjct: 182 EIPGCPPNPYTILKGLRRLM 201


>UniRef50_D2LGK5 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Rhodomicrobium vannielii ATCC 17100
           RepID=D2LGK5_RHOVA
          Length = 358

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 54/259 (20%), Gaps = 60/259 (23%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP----LFDAERFGIKVVPSPRHA------------- 79
              +  +  GGC GC + +    SP      D  R  +   PS   A             
Sbjct: 23  RLSLLWLQSGGCGGCSMSLLNADSPDLFAALDLGRIDVLAHPSLSEASGEDYHALIARIL 82

Query: 80  ------DILLFTGAVTRAMR-------------SPALRAWQSAPDPKICISYGACGNSGG 120
                 DIL   GA+ R                       + A      I+ G+C   GG
Sbjct: 83  SGQQPLDILCVEGAILRGPNGTGRFHLQPGTGKPVMQLVAELAACAGHVIAIGSCTAYGG 142

Query: 121 IFHDLYCVWGGTDKIVP------------------VDVYIPGCPPTPAATLYGFAMALGL 162
           +      V                             + I GCP  P   +         
Sbjct: 143 VSAAGDNVTEACGLAFEGAEPGGLLGPGFRSHSGLPAINIAGCPTHPGWIVETLVQLGDG 202

Query: 163 LEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL----AGYR-YGRQIADDYLT 217
                     G        ++H    +    +    A+            G      +  
Sbjct: 203 TFSASDLDTYGRPRFYADHLVHHGCTRNEFYEYKASAKEPGQLGCLMEHLGCIGTQVHGD 262

Query: 218 QLGQGEEQVARWLEAENDP 236
              +              P
Sbjct: 263 CNMRAWNGEGS-CIRGGYP 280


>UniRef50_Q5FU78 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans
           RepID=Q5FU78_GLUOX
          Length = 161

 Score =  119 bits (298), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 62/133 (46%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTG 86
               + + +R   +Y ++ GGC GC +EI +     F  E+ G   V  P  AD LL TG
Sbjct: 26  VEGEVPRRERPIGLYVLEAGGCEGCFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTG 85

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCP 146
           AVTR       R W++ P  +  I+ GAC   GG F   Y   GG + + PV   I GCP
Sbjct: 86  AVTRVCAEMVDRVWRAMPPGRSLIAVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCP 145

Query: 147 PTPAATLYGFAMA 159
           P+P   L      
Sbjct: 146 PSPDDILRALQEL 158


>UniRef50_B5ICA0 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2
           Tax=Aciduliprofundum boonei T469 RepID=B5ICA0_9EURY
          Length = 179

 Score =  118 bits (297), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 12/132 (9%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMR 93
             +S +++ +D G C+ C  EI    SP +D  R G    P PRHADILL  G  T  M 
Sbjct: 60  FNKSVHIFVLDVGSCSSCNREISLLNSPQYDLHRLGFFFTPVPRHADILLVIGEPTEKMI 119

Query: 94  SPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATL 153
                A++  P+PKI ++ GAC N               +KI+ VD  + GCPP P A L
Sbjct: 120 PVLKEAYEQMPEPKIVMTAGACAN------------EKIEKIIKVDARVSGCPPQPIAIL 167

Query: 154 YGFAMALGLLEQ 165
               M  G    
Sbjct: 168 KALLMLTGRWNP 179


>UniRef50_C0QPV6 Hydrogenase-2, small subunit n=7 Tax=Bacteria RepID=C0QPV6_PERMH
          Length = 306

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 56/230 (24%), Gaps = 53/230 (23%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHA------------------- 79
            +  +    C+G         +P        I ++  P  +                   
Sbjct: 3   NLLWIQGLTCSGNSQSFLCGENPTVSDFFSEINLLWHPEISYSEDIMDILNGIYRDEIKL 62

Query: 80  DILLFTGAVTRAMRSPALRAW-------QSAPDPKICISYGACGNSGGIFHDLYCV---- 128
           D L+  GAVT   R   +  +       +        I+ G C   G  +  LY      
Sbjct: 63  DFLIIEGAVTSNKRFHRIGKYSIKYIINKLKSKADYIIAVGNCAVHGN-YPALYNPDQIT 121

Query: 129 -----WGGTDKIVP---------VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
                  G   ++P           + I GCP  P             L+  +       
Sbjct: 122 GIQFGLNGKKGLLPQKFRTKSGYPVINITGCPVHPEWITKTVLTLSYGLD--LKLDSQNR 179

Query: 175 LDEQPAEILHGDMVQPLRVKVDREA-----RRLAG-YRYGRQIADDYLTQ 218
             E    + H    +    +   EA     +     Y  G +    +   
Sbjct: 180 PKELYMYLSHDGCTRNEYFEWKVEAEEFGTKEGCLFYELGCRGPVTHAPC 229


>UniRef50_A0LSU0 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Acidothermus
           cellulolyticus 11B RepID=A0LSU0_ACIC1
          Length = 269

 Score =  117 bits (292), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKR---SAYVYRVDCGGCNGCEIEIFA 57
           +      RD   +P     D+++A+++A L ++ +    S +V  VD G     E E+ A
Sbjct: 85  IPAPAAHRDLLVVPALPETDDALAAVRAELARRTRLLRRSIHVRHVDAGSDGADEWEVLA 144

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            L+P++D  R GI    SPRHAD+LL TG  +R M +P  R  Q+AP P + I+ G    
Sbjct: 145 LLNPVYDIHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIAAGTDAI 204

Query: 118 SGGIFHDLYCVWGGTDKIV------------------PVDVYIPGCPPTP 149
           SGG+ H  Y   GG   ++                   VD+++PG PPTP
Sbjct: 205 SGGLVHPTYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPTP 254


>UniRef50_D2BHA4 Nickel-dependent hydrogenase, group 3, small subunit n=5
           Tax=Dehalococcoides RepID=D2BHA4_DEHSV
          Length = 312

 Score =  116 bits (291), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 71/260 (27%), Gaps = 55/260 (21%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVP-----------------SPRHA 79
             V       C GCE+ I     PL D      I  +P                     A
Sbjct: 2   VRVAEEWFAVCGGCELSILDIGEPLLDVLPNLKIVHMPVLMDHKLLGQKGDGIKYEIPEA 61

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF----------------- 122
           D+ + TG +          A +     K+ ++ G C   GGI                  
Sbjct: 62  DLGIITGGIRNEENREL--ALEMRKKCKLIVALGTCACFGGIPALANLSTTEDMLKQVFS 119

Query: 123 ----------------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQK 166
                             +       D+I+ VD+++PGCPPTPA  +      L      
Sbjct: 120 KEKGTDPASPPGDKSLPKMLDRVYAVDEIITVDIHLPGCPPTPAHIVELLTAVLAGKTFA 179

Query: 167 IHARGPGELDEQPAEILH--GDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEE 224
           +  R   +      E     G + +PL+       R         Q           G  
Sbjct: 180 LPERSVCDTCPTIREKQSTGGSIKRPLQNAQFTPGRYDNMRCLNEQGLFCLGPVTKAGCN 239

Query: 225 QVARWLEAENDPRLNEIVSH 244
           ++     +E  PR  +    
Sbjct: 240 RILGADPSEEIPRCIKAYMP 259


>UniRef50_Q50782 F420-non-reducing hydrogenase subunit G n=15 Tax=Euryarchaeota
           RepID=MVHG_METTH
          Length = 308

 Score =  116 bits (290), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 64/247 (25%), Gaps = 51/247 (20%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP----------RHADILL 83
           +     +  +  GGC+GC + I      + D          SP             D+++
Sbjct: 1   MAEKIKIGTMWLGGCSGCHLSIADFHEKIIDVMEH-ADFEFSPVLMDTKYDEIPELDVVI 59

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF--------------------- 122
             G +          A +     K  ISYG C   GGI                      
Sbjct: 60  IEGGIVN--DENREFAEELREKAKFVISYGTCAVYGGIPGLRNLWDKDEVIEEAYINSIT 117

Query: 123 -------------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHA 169
                          L        +++ VD  +PGCPP            L   E ++  
Sbjct: 118 TPNEEGVIPSEDVPHLEGRVKPLGEVIDVDFEVPGCPPRSDVAAEAVMALLTGEEIELPE 177

Query: 170 RGPGE--LDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
               E    E+P E L  D ++        +            I     T    G E  +
Sbjct: 178 TNLCEVCPREKPPEGLAMDFIKRQFEV--GKPEDDLCLIPQGLICMGPATVSICGAECPS 235

Query: 228 RWLEAEN 234
             +    
Sbjct: 236 IAIPCRG 242


>UniRef50_Q46BG0 Methanophenazine-reducing hydrogenase, small subunit n=9
           Tax=Methanosarcina RepID=Q46BG0_METBF
          Length = 411

 Score =  116 bits (290), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 24/281 (8%), Positives = 58/281 (20%), Gaps = 76/281 (27%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSPLF---------DAERFGIKVVPSPRHAD--------- 80
            V  +     +GC I +    SP                 + ++      D         
Sbjct: 58  KVVWLHGVMDSGCTISMLDGGSPDIIEFLQEYNLKLLYHEVLMMQQGIFVDGKLANTSDL 117

Query: 81  ----------------ILLFTGAVTRAMRSPALRAW-----------QSAPDPKICISYG 113
                           +L+  GA++                      ++A +    ++ G
Sbjct: 118 NSEIVLDDILEKEKGYVLVSEGAISNGPEGSGKYLMLGGRTYKEIYAKAAKNALAIVAIG 177

Query: 114 ACGNSGGIFHDLYCVW----------------GGTDKIV---PVDVYIPGCPPTPAATLY 154
            C  +GG+      +                  G   ++      + + GCP  P     
Sbjct: 178 NCATNGGVNSAKSDIVELMDPRGVAFTMEDASKGILDLLGIEKPVINLTGCPTHPDWVFL 237

Query: 155 GFAMALGLLEQKIH-----ARGPGELDEQPA--EILHGDMVQPLRVKVDRE----ARRLA 203
                +    +                       ++H +  +                  
Sbjct: 238 TIGAVVLGKIKIPDDLPYVLDHWKRPKVFFPPDHVIHDNCSRRGYYDRGEFELTVGGPKC 297

Query: 204 GYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSH 244
            ++ G +    +     +       +      P     V  
Sbjct: 298 LWKLGCKGPYTHADCATRNWNGHLNYCPQAGSP-CIGCVQP 337


>UniRef50_Q0W5V7 F420-nonreducing hydrogenase (Membrane-bound), small subunit n=2
           Tax=Euryarchaeota RepID=Q0W5V7_UNCMA
          Length = 388

 Score =  115 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 64/285 (22%), Gaps = 74/285 (25%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSP--------------LFD--AERFGIKVVPSPRHAD-- 80
            +  +   GC GC         P                D    + GI +    +  D  
Sbjct: 49  KLLWLRGSGCGGCTASFLNGGYPDVLAALDSVGAVITYHDGLMAQQGITLDGVSKTPDTY 108

Query: 81  ---------------ILLFTGAVTRAMRS-----------PALRAWQSAPDPKICISYGA 114
                          +L+  GA+                       ++A   +  I+ G 
Sbjct: 109 NALKKLDLLIDSGDYVLVVEGAIPNGPDGTGKYCTTGGRAVKEIFSEAAEKAETIIALGT 168

Query: 115 CGNSGGIFHDLYCVWG-------GTDKIV---------PVDVYIPGCPPTPAATLYGFAM 158
           C   GGI      V         G  +              + +PGCP  P   L   A 
Sbjct: 169 CAAFGGISSAGRSVTDARGVAYTGASRFNGILSELNMRKKVINVPGCPAHPDWFLLTLAD 228

Query: 159 ALGLLEQKIHARGPGELDEQPAEI-LHGDMVQPLRVKVD----REARRLAGYRYGRQIAD 213
            L     ++            ++  +H    +           + A     Y  G +   
Sbjct: 229 VLSG--AEVTVDDYRRPAAFFSKSAIHDTCTRRGSYDQGQRDTQFAGEGCLYGAGCKGMI 286

Query: 214 DYLTQLGQGEEQVARWLEAENDP--RLNE-----IVSHLNHVVEE 251
            Y     +              P     E           + VE+
Sbjct: 287 TYADCPVRRWNGGVSTCTLAGGPCVGCVEAEFPGAFMPFFNRVED 331


>UniRef50_Q0W6J6 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing
           hydrogenase), gamma subunit n=2 Tax=Euryarchaeota
           RepID=Q0W6J6_UNCMA
          Length = 305

 Score =  113 bits (284), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 71/256 (27%), Gaps = 56/256 (21%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLS---PLFDAERFGIKVV----PSPRHADILLFTGAVT 89
              V     G C GCEI +  T     P+ D   F    V         A + + +G V 
Sbjct: 3   KVKVAETWIGACAGCEISVLDTHEALLPILDKIEFVYIPVLMDTKHIPKATVGIVSGCVR 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIF--HDLYCV------------------- 128
            +         +   +  I ++ G+C   GG     +LY                     
Sbjct: 63  NSDN--LHELLEMRKNVDILVALGSCACFGGTPGMANLYTPEQLLEEVYVTTKSTKNEIQ 120

Query: 129 --------------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
                                V VD  IPGC P PA         LG  E K+  +   +
Sbjct: 121 RHPYMDGLPTLLPDAKPLSDYVKVDAMIPGCGPRPAMIAQAILSLLGAAEYKLSTKSVCD 180

Query: 175 LDEQ-PAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQV------- 226
              +  +E     +++P    +D +            +     T+ G G           
Sbjct: 181 ECAREKSERNLKKILRPFEGTIDEK----KCLFEQGYLCSGSATRAGCGAMCPSSGVACR 236

Query: 227 ARWLEAENDPRLNEIV 242
             +   EN P     +
Sbjct: 237 GCFGPCENSPEQGSAM 252


>UniRef50_C6A155 NiFe hydrogenase I, subunit delta n=1 Tax=Thermococcus sibiricus MM
           739 RepID=C6A155_THESM
          Length = 267

 Score =  113 bits (283), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 54/225 (24%), Gaps = 50/225 (22%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS-------PRHADILL 83
           ++++     +       C GC+++       L   ++  I+            +  DI  
Sbjct: 4   VRRMSEKVKIGFYALTSCYGCQLQFAMMDEVLQLLDKANIECWFMLERGSDEDKEVDIAF 63

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL------------------ 125
             G+V+           +     KI I+ G+C   GG+                      
Sbjct: 64  IEGSVSTQEE--VELVKKIREKAKIVIAVGSCAVHGGVQSWDKDKEFNELWKTVYGDAHV 121

Query: 126 ---YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
                +    +K + VD  + GCPP     LY     L     +                
Sbjct: 122 KFEPKMAEPVEKYIKVDYKLYGCPPEKKDFLYALGTLLIGSWPEDIDYPVCVECRLRG-- 179

Query: 183 LHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
                                      +     LT  G      A
Sbjct: 180 ------------------NPCLLIEKGEPCLGPLTVAGCDARCPA 206


>UniRef50_UPI0001B52F0A hydrogenase 4, Fe-S subunit n=1 Tax=Shigella sp. D9
           RepID=UPI0001B52F0A
          Length = 173

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 81/116 (69%), Positives = 94/116 (81%)

Query: 5   LGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFD 64
           + P     +  P+T+DE    MK  LL+ I+RSAYVYRVDCGGCN CEIEIFA ++P+FD
Sbjct: 1   MSPVLTQHVSQPITLDEQTQKMKQHLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFD 60

Query: 65  AERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
           AERFGIKV+ SPRHADILLFTGAVTRAMR PALRA++SAPD KIC+SYGACG  GG
Sbjct: 61  AERFGIKVISSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGAGGG 116


>UniRef50_P80491 Coenzyme F420 hydrogenase subunit gamma n=27 Tax=Euryarchaeota
           RepID=FRHG_METBF
          Length = 259

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 62/222 (27%), Gaps = 37/222 (16%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLF-------DAER-FGIKVVPSPRHADILLFT 85
           +     +  V   GC GC + +      L        D      +  V      D+ L  
Sbjct: 1   MTNKIKIGHVHMSGCTGCLVSLADNNLGLIKILDDYADLVYCLTLADVRHIPEMDVALVE 60

Query: 86  GAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH---------DLYCVWGGTDKIV 136
           G+V            ++    KI ++ G+C   G I             +  +     ++
Sbjct: 61  GSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHESYLPIGDLI 120

Query: 137 PVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVD 196
            VDVYIPGCPP+P        MA  LLE     +       +P               + 
Sbjct: 121 DVDVYIPGCPPSPELIRNVAVMAYLLLEGNEEQKELAGKYLKP---------------LM 165

Query: 197 REARRLAGYR----YGRQIADDYLTQLG-QGEEQVARWLEAE 233
             A+R             I        G          +  E
Sbjct: 166 DLAKRGTSGCFCDLMYDVINQGLCMGCGTCAASCPVHAITLE 207


>UniRef50_B6YTV9 Coenzyme F420 hydrogenase gamma subunit n=1 Tax=Thermococcus
           onnurineus NA1 RepID=B6YTV9_THEON
          Length = 225

 Score =  110 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 49/150 (32%), Gaps = 13/150 (8%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFTGAVTRA 91
               V  VD GGC GC + I      L D     I  +          D+ + TG     
Sbjct: 2   EKLKVLHVDVGGCEGCNVSIIRAYPKLMDLIELDISYLRKDECKLDEYDVAIITGGACMN 61

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGI---------FHDLYCVWGGTDKIVPVDVYI 142
                    +        +++G+C    GI             +  +   + ++ VD  I
Sbjct: 62  EPRILEELKEIREKAHTVVAFGSCATFSGILRFCRGGQEPRPDHRNFQPINSVIKVDYSI 121

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           PGCPPTP      F   +   E+++     
Sbjct: 122 PGCPPTPQMLQSFFKFYINGDERRLRLFKV 151


>UniRef50_C5A2R7 Coenzyme F420 hydrogenase subunit gamma (FrhG) n=1 Tax=Thermococcus
           gammatolerans EJ3 RepID=C5A2R7_THEGJ
          Length = 229

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 13/150 (8%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR----HADILLFTGAVTRA 91
               V  VD  GC GC + I      L +     I  +          D+ L TG     
Sbjct: 5   EKLKVLHVDFAGCEGCNVSIIRAYPKLMNEIDLDISYLRDGSCQYGEYDVALITGGACMN 64

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGI---------FHDLYCVWGGTDKIVPVDVYI 142
                    +     ++ +++G+C + GGI             +  +   + ++PVD  I
Sbjct: 65  EPRILEELKEIREKARVVVAFGSCASLGGILRFARGGQEPRPDHRNFQPINSVIPVDYSI 124

Query: 143 PGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           PGCPPTP      F   +   E ++     
Sbjct: 125 PGCPPTPQMLQSFFKFFMAGNESRLRLFKV 154


>UniRef50_C6YT65 Predicted protein n=2 Tax=Francisella philomiragia
           RepID=C6YT65_9GAMM
          Length = 268

 Score =  108 bits (271), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 62/238 (26%), Gaps = 51/238 (21%)

Query: 27  KASLLKKIKRSAYVYRVDCGGCNGCEIEIFA------TLSPLFDAERF-GIKVVPSPRHA 79
               LK +     +       C+GC++ +        TL+ + D   F     +      
Sbjct: 3   AQDKLKNLAPRPKIAVHKFSSCDGCQLALINDAVSLLTLAEMVDIVHFAEAGPLDEFADV 62

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH---------------- 123
           DI    G+V      P  R  +     K  I+ GAC  +GGI                  
Sbjct: 63  DIAFIEGSVNTHHDIP--RLQKIREKAKYVIAIGACAVAGGIQALRNYTNAAELLEWQKA 120

Query: 124 -----------DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
                      +         + V VD  I GCP T    L      L  +E +      
Sbjct: 121 VYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQILKAIRQLLFGVEPEKVVDPV 180

Query: 173 GELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQ-GEEQVARW 229
               +  +       V   + +             G   AD       + G      +
Sbjct: 181 CTSCKHASVT----CVMVAKDEP----------CLGPVTADGCGAICPKLGRGCYGCF 224


>UniRef50_Q58136 Uncharacterized protein MJ0726 n=3 Tax=Methanocaldococcus
           RepID=Y726_METJA
          Length = 216

 Score =  108 bits (271), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 65/203 (32%), Gaps = 18/203 (8%)

Query: 45  CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAP 104
             GC  C   I       ++            +  DI+L  GAV         +  +   
Sbjct: 1   MTGCGSCGKIIKNIEKKYYNQL----------KEKDIVLVGGAVNLDDEEEVKKIMEIRK 50

Query: 105 DPKICISYGACGNSGGIFH-------DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFA 157
           + K+ I+ G+C  SGG               +     +V VD  I GCPP          
Sbjct: 51  NSKVLIAVGSCAVSGGFQRMLIGLENGFPQRFVRIGDVVKVDYAIIGCPPDEEEVERIVK 110

Query: 158 MALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLT 217
             +   ++ + +    +  E  A     D    +   +    + L      + I D++ T
Sbjct: 111 AVIEKDKEIVDSYLILKPYEVIAGKPIIDAYMKVNDVLLTSNKELCLGCDDKPINDEFCT 170

Query: 218 QLG-QGEEQVARWLEAENDPRLN 239
             G    +  A  L  +  P++N
Sbjct: 171 GCGTCVAKCPANALTIDEKPKVN 193


>UniRef50_C7NPL1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NPL1_HALUD
          Length = 266

 Score =  108 bits (271), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 53/222 (23%), Gaps = 51/222 (22%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAE------RFGIKVVPSPRHADILLFTGAVTR 90
              V   D  GC G ++++      L D         F   +       +I    G V  
Sbjct: 6   KPRVAFFDFTGCEGDQLQVINLEDRLLDLVEVVEVVSFREAMTEHSDEYEIAFVEGGVAT 65

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHD----------------------LYCV 128
           A      R      +  + ++ G+C   GGI                          Y +
Sbjct: 66  AHDE--RRLTDIRDNADVVVALGSCAAFGGINALRNHQDFETVKERVYGEDADSITSYPI 123

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMV 188
               + ++ V+  IPGCP      L      +   E  I         +           
Sbjct: 124 ARPIEDVIEVEYEIPGCPIDREEFLGAVTALVNGAEPSIPNYPVCLECKFAENT------ 177

Query: 189 QPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWL 230
                                +     +T+ G     V+   
Sbjct: 178 ---------------CAFERGETCLGPITRGGCSATCVSAGT 204


>UniRef50_A1SU83 Hydrogen dehydrogenase n=23 Tax=Proteobacteria RepID=A1SU83_PSYIN
          Length = 433

 Score =  108 bits (269), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 50/180 (27%), Gaps = 44/180 (24%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP--------RHADILLFTG 86
           K+   +      GC GC +        L +     +++  SP           D+ L  G
Sbjct: 255 KKKLKLATCSLAGCFGCHMSFLDMDERLIELLE-RVELSRSPLNDIKTCAPDCDLGLIEG 313

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF------------------------ 122
           AV                  KI I+ G+C  +GG+                         
Sbjct: 314 AVCNTENIAV--LRHFRESCKIIIAVGSCAINGGVPSLRNNIDVKDCLDEAYLNGIGLVN 371

Query: 123 ---------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPG 173
                      L        +++ VD ++PGCPP   A        L   E ++      
Sbjct: 372 PKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPADAFWKILNDLLDGKEPELPYDLLH 431


>UniRef50_Q0RN51 Uptake hydrogenase small subunit (Hydrogenlyase) (Membrane-bound
           hydrogenase small subunit) n=23 Tax=Bacteria
           RepID=Q0RN51_FRAAA
          Length = 359

 Score =  108 bits (269), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 60/288 (20%), Gaps = 73/288 (25%)

Query: 38  AYVYRVDCG-GCNGCEIEIFATLSPLFDAERFGIK---------------------VVPS 75
            ++  +  G  C+G  + + A   P  +    G+                       +  
Sbjct: 20  VHILWISEGMSCDGDTVSVTAASQPAIEDVITGVIPGLPTVHLHNKVLSPTLGGEEFLAP 79

Query: 76  PRHAD-------ILLFTGAVTRAM-------------------RSPALRAWQSAPDPKIC 109
            R A        +L+  G++                        +      + AP     
Sbjct: 80  FRAAARGELEPFVLVIEGSIPNENINGEGYWTSFGNDPDTGQPLTINWWIDRLAPRAWAV 139

Query: 110 ISYGACGNSGGI--FHDLYCVWGGTDKIVPVD---------VYIPGCPPTPAATLYGFAM 158
           I+ G C   GGI           G    +  D         V +PGCP  P   +     
Sbjct: 140 IAIGTCAAYGGIHAMAGNPTGSMGLLDYLGRDFTSAGNLPIVNVPGCPVQPDDFMETLTW 199

Query: 159 AL---GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRL----AGYRYGRQI 211
            L                         +H    +    +    A+         + G   
Sbjct: 200 LLYHAAGTAPPPPLDDQHRPQWIFGRTVHEGCDRAGYYEQGDFAKDYNSPKCQVKIGCWG 259

Query: 212 ADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHVVEEA 252
                    +G                    P   +       +   A
Sbjct: 260 PVVNCNVPKRGWMGGVGGCPNVGGICIACTMPGFPDKFMPFMDMPPGA 307


>UniRef50_B5YB68 NAD-reducing hydrogenase HoxS delta subunit n=2 Tax=Dictyoglomus
           RepID=B5YB68_DICT6
          Length = 180

 Score =  107 bits (268), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 52/175 (29%), Gaps = 43/175 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP--------RHADILLFTGAV 88
              V  V C GC+GC +        L +    G+++  +P           DI +  GAV
Sbjct: 3   KIKVASVWCEGCSGCHMSFLDMDERLVELINKGLEINATPITDLKIPDEGTDIGIIEGAV 62

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------------- 122
                             KI ++ G C   GGI                           
Sbjct: 63  ATDHHE--EEVKMMRERCKIIVALGDCAVFGGIPTMRNYIPREELLERGYITTESTVDGK 120

Query: 123 -------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHAR 170
                            ++++ VD+Y+PGCPP+  A  Y     L     K+   
Sbjct: 121 IPTSPEIGKHLPKTKAVNEVIKVDLYVPGCPPSADAIYYVLKEVLEGRIPKLEGE 175


>UniRef50_D2REQ3 NADH ubiquinone oxidoreductase 20 kDa subunit n=2 Tax=cellular
           organisms RepID=D2REQ3_ARCPR
          Length = 321

 Score =  107 bits (267), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 67/264 (25%), Gaps = 70/264 (26%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVV-------------PSPRHA-DIL 82
             +  +  GGC GC++ +      L D  E   I                  P  + D+ 
Sbjct: 3   LKLAYLLVGGCGGCDMAVVDLSEKLVDALEHLEIVFWAPTVADVKYKDLEAMPDQSIDLG 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------- 122
           L +G V        ++        KI +++G C   GGI                     
Sbjct: 63  LISGMVRNKENEHLVKV--MRQKCKIIVAFGICAALGGIPGMANMHKNEELFENAYIKSP 120

Query: 123 -----------------------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
                                   +        D+++ VD Y+ GCPP            
Sbjct: 121 STDNPNNVIPQPVSKEGEFELTLPEFLDRVKPIDEVIEVDYYVGGCPPHHDHVAKVVEAV 180

Query: 160 LGLLEQKIHARGPGELDEQPAEILHGDMVQPL--RVKVDREARRLAGYRYGRQIADDYLT 217
           +                    + +     +    + K     + +   R    I D+   
Sbjct: 181 ITGNLPPK------GSWITNGKAVCDVCARNPAVKGKTREFVKEVK--RMHEGIPDEEEC 232

Query: 218 QLGQGEEQVARWLEAENDPRLNEI 241
            L QG   +    + +      ++
Sbjct: 233 LLNQGYLCLGPVTQGDCGALCPKV 256


>UniRef50_C8X546 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Desulfohalobium retbaense DSM 5692
           RepID=C8X546_DESRD
          Length = 334

 Score =  107 bits (267), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 76/267 (28%), Gaps = 68/267 (25%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA-------------ERFGIKVVPSPRHA- 79
           + R   +     G C GC++ +  T   L +              +     +   P  + 
Sbjct: 1   MSRRMSIAMNWAGACGGCDVSLLDTQGKLLELTAVADVVYWPVALDYKRSDLEALPEKSV 60

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF----------------- 122
           DI LF G V  +    A  A +     ++ ++YGAC   GGI                  
Sbjct: 61  DIGLFNGVVRTS--EQAEDARRLRERCRVLVAYGACACHGGIPGLANQSDREEIFRVAYQ 118

Query: 123 --------------------------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY-- 154
                                        +       ++V VD ++PGCPPTP   L   
Sbjct: 119 DTVSTDNPDQIRPQQRTPVPGGEVTLPAFHDSVRALHQVVDVDYFLPGCPPTPERILDLL 178

Query: 155 GFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADD 214
           G   A    +    A      +      L  +  +    +  R  R    YR    +AD 
Sbjct: 179 GVVQAYNAGDDLPPAGSILAPEA----TLCQECPR---AETRRAGRMPRLYRPHEIVADP 231

Query: 215 YLTQLGQGEEQVARWLEAENDPRLNEI 241
               L QG   +  +           +
Sbjct: 232 ETCFLEQGVICMGPFTRGGCGSACITV 258


>UniRef50_C9R9W3 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R9W3_AMMDK
          Length = 319

 Score =  107 bits (267), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 66/262 (25%), Gaps = 69/262 (26%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER-FGIKVVPS------------PRHA- 79
           +     +       C GC++ I  T     D  +   I  +P             P    
Sbjct: 1   MAEKLKIASYWAADCGGCDVAILDTHEKFLDIVQAADIVFMPIAVDIKEKDVEAFPDGYI 60

Query: 80  DILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF----------------- 122
           D+  F GA+  +      +        K+ +++G+C   GG+                  
Sbjct: 61  DVCFFHGAIRNSENEHMAKL--LRRKSKVLVAFGSCAMMGGVPGLANFKDREGILSRVYF 118

Query: 123 --------------------------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGF 156
                                        Y        +V VD ++PGCPP     +  F
Sbjct: 119 ESPSTDNPDKVLPQTETQVREGVLTLPAFYEEVKTLADVVDVDYFMPGCPPASHQIVNVF 178

Query: 157 AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYL 216
              +            G +     + +  +  +    K     +R   YR    I D   
Sbjct: 179 QAIVAGNLPPK-----GSIVGASTKSVCEECSRIKENKT---IKRF--YRVHEIIPDPER 228

Query: 217 TQLGQGEEQVARWLEAENDPRL 238
             L QG   +            
Sbjct: 229 CLLEQGIPCMGPATRGGCGAAC 250


>UniRef50_B1I576 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Candidatus
           Desulforudis audaxviator MP104C RepID=B1I576_DESAP
          Length = 317

 Score =  106 bits (264), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 69/265 (26%), Gaps = 69/265 (26%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERF-GIKVVPSPRHA-------------DIL 82
              +       C GC++ I      + D      I   P                  D+ 
Sbjct: 3   KLKLASYWAAACGGCDVAILDIHEKIVDVAAVADIVFWPIAVDFKYADVEGYEDGFIDVC 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------- 122
           LF GA+  +      +        K+ +++G+C  SGGI                     
Sbjct: 63  LFHGAIRNSEGEHVAKL--LRKKSKVMVAFGSCAISGGIPGLANFKQKNDIFYRVYIESQ 120

Query: 123 -----------------------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
                                   + Y        +V VD ++PGCPPT A       + 
Sbjct: 121 STQNPEKVYPQTHYAVPEGVLELPEFYKEVKSLSDVVDVDYFMPGCPPTSAQIWAVIQVI 180

Query: 160 LGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQL 219
                        G       + L     +    K D++ ++   Y+  + I D     L
Sbjct: 181 ASGALPPK-----GAFVGCENQTLCNTCTRT---KTDKKVKKF--YQPYQIITDPEKCLL 230

Query: 220 GQGEEQVARWLEAENDPRLNEIVSH 244
            QG   +     A    +       
Sbjct: 231 EQGLTCMGPVTRAGCGNQCVSANQP 255


>UniRef50_Q04P25 Metal (Ni/Fe) hydrogenase, small subunit n=4 Tax=Leptospira
           RepID=Q04P25_LEPBJ
          Length = 273

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 12/164 (7%)

Query: 6   GPRDANGIPVPMTVDESIASMKASLLKKIKRSAY-----VYRVDCGGCNGCEIEIFATLS 60
             R+A  +     + +    M+   +K+ +++          V   G N  E EI A+ +
Sbjct: 99  TDREALKVTYTNGMPDEKPEMETEEVKRFRKTTKKTGFQFREVAASGNNTTEAEINASFN 158

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG 120
            LFD+E   I+VV SP+HAD L+++G V   M  P   AW++ P PK  ++ G+   SGG
Sbjct: 159 ALFDSEASKIRVVASPKHADALVYSGPVGPNMEEPLNTAWETMPSPKALVACGSEAVSGG 218

Query: 121 IFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLE 164
           +F                D++I G PP P   +  F   +G  E
Sbjct: 219 LFKLGKLPKEP-------DLFIGGDPPRPDVIISAFRYLMGTRE 255


>UniRef50_Q2W8A6 Ni,Fe-hydrogenase I small subunit n=4 Tax=Proteobacteria
           RepID=Q2W8A6_MAGSA
          Length = 384

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 66/262 (25%), Gaps = 62/262 (23%)

Query: 32  KKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAER----FGIKVVPSPRHA-------- 79
           ++   +  +Y + CGGC G  +    + +P  D  +     GI VV  P  +        
Sbjct: 69  RRPGMNLNLYWLQCGGCGGDTMSFLNSETP--DILQLFSGLGIDVVYHPSLSNTSQAEQH 126

Query: 80  -------------DILLFTGAV-----------TRAMRSPALRAWQSAPDPKICISYGAC 115
                        DIL+  GAV           T+  R         A   +  ++ G C
Sbjct: 127 SQLEVISSGEMPLDILVVEGAVLRGPAGTGMYDTKGRRPKKDIVAALARQARFVVAAGTC 186

Query: 116 GNSGGI------------FHDL-YCVWGGTDKIVP---VDVYIPGCPPTPAATLYGFAMA 159
              GG             FH      + G D         + + GCP  P          
Sbjct: 187 AAFGGFGARTEIEATGLQFHRSEPGGFLGADFRAKSGLPVLNLSGCPCHPQVLSSVLTAL 246

Query: 160 LGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKV----DREARRLAGYR-YGRQIADD 214
                 ++              ++H    +    +     D    +   +   G      
Sbjct: 247 ATG--AELPLAPLNRPLPWYGMMVHQGCTRNEYHEYRVEEDNFGEKGCLFFHMGCHGPLV 304

Query: 215 YLTQLGQGEEQVARWLEAENDP 236
                     Q +        P
Sbjct: 305 TGPCNKLLWNQRSSKTR-AGVP 325


>UniRef50_C1DUT4 Putative [NiFe] hydrogenase, delta subunit n=1
           Tax=Sulfurihydrogenibium azorense Az-Fu1
           RepID=C1DUT4_SULAA
          Length = 249

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 60/241 (24%), Gaps = 35/241 (14%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV------VPSPRHADILLFTGAVTRAM 92
            V       C+GC++        L + E F I        V +  + D     G+V+   
Sbjct: 2   RVGIFKFSSCDGCQLSFINLSGELAELENFSIDYFLEGQSVNNYEYFDFSFVEGSVST-- 59

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIF-----------HDLYCVWG----------G 131
                R        K+ +  GAC  SGG+              +Y               
Sbjct: 60  TEEIERIKDIRERSKVLVGIGACAVSGGVQSIRNFRNIDDIKTVYNTVDITKNVLENALP 119

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPL 191
             ++V VD  I GCP +           L       +        ++   I    + +P 
Sbjct: 120 ISQVVKVDFEIRGCPVSTDVVKDFINSILIGKSPHNYNYPVCLECKRRGNICLLVLNKPC 179

Query: 192 RVKVDREARRLAG-----YRYGRQIADDYLTQ-LGQGEEQVARWLEAENDPRLNEIVSHL 245
              +                YG                 +   W   +         +HL
Sbjct: 180 LGPITTAGCNALCPSVNRGCYGCFGPYKDANIEAFYNLFKEKGWGIRDFIENSLNPYNHL 239

Query: 246 N 246
            
Sbjct: 240 F 240


>UniRef50_A0LLU1 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLU1_SYNFM
          Length = 184

 Score =  104 bits (260), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 46/175 (26%), Gaps = 42/175 (24%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFD---AERFGIKVVPS----PRHADILLFTG 86
                 +     GGC GC + +      L D           V      P   D+ L  G
Sbjct: 5   ASNKVRLATAWFGGCAGCHMSLLDLDERLIDVVGLVDIVYSPVADIKVFPEGVDVTLVEG 64

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------HDLYC 127
           A           A +     KI I++G C  +G +                         
Sbjct: 65  ACCN--DENVHLAHEVRERSKIVIAFGDCAVTGNVPSMRNRLDRDQMINSVYFEGPGKPP 122

Query: 128 VWG--------------GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
                               +++PVD+++PGCPP P          L      + 
Sbjct: 123 PTSVLGHFLPTLIPKVLPLHQVIPVDIFLPGCPPDPERIWAAIVALLKGEPVLLP 177


>UniRef50_B1L5Y5 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Candidatus Korarchaeum cryptofilum OPF8
           RepID=B1L5Y5_KORCO
          Length = 319

 Score =  104 bits (259), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 65/267 (24%), Gaps = 71/267 (26%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPSPRHA-------------DIL 82
            A +    C  C GCE         LFD  E   I + P                  D+ 
Sbjct: 3   KAKIAFYWCASCGGCEEAQVDLADKLFDLIEAADIVLWPVAMDFKKEDVEKVGDGSIDVA 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLY 126
           +  G +  +     ++        K+ I+YG+C + GGI                + +  
Sbjct: 63  IINGGIRTSEHEEMVKL--LRRKSKLVIAYGSCAHMGGIPALANAYTRESILKYVYEEAP 120

Query: 127 CVWG---------------------------GTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
            V                               D ++ VD YIPGCPPTP  T    +  
Sbjct: 121 TVTNPEGKRPKTRVSVDGMDFELPEFLEYLDPLDAVIDVDYYIPGCPPTPEITWEAVSSI 180

Query: 160 LGLLEQKI-----HARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGY------RYG 208
           L              R                 +  ++     E      Y        G
Sbjct: 181 LSGNLPPKGHVFGSDRALCYECPLNETKPEKVTIDTIKRVHQTELDPNKCYLTQGVLCMG 240

Query: 209 RQIADDYLTQLGQGEE-QVARWLEAEN 234
                       +G       +   + 
Sbjct: 241 PVTRGGCKALCIKGNMPCTGCFGPVDG 267


>UniRef50_B1L3Q1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Candidatus Korarchaeum cryptofilum OPF8
           RepID=B1L3Q1_KORCO
          Length = 258

 Score =  104 bits (259), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 65/251 (25%), Gaps = 37/251 (14%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKV---VPSPRHAD----ILLFTGAVT 89
                     GC G  + I      L D           + S +  D    I    G+V+
Sbjct: 3   KLRAAFYSLTGCQGEYLTILGMEDILLDLLSLVDIAEFKLASSKEYDGKVDIAFVEGSVS 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFH----------------------DLYC 127
                      +   + KI ++ G C   GGI                            
Sbjct: 63  T--ERDLEYIKRIRGNSKILVALGDCAVWGGIQASTSGQDPKELMRSVYKTEKNLYGFLG 120

Query: 128 VWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDM 187
              G  ++VPVD  I GCP             +  ++ ++         +   EI    +
Sbjct: 121 EHKGISEVVPVDYEIQGCPIEGKEFARVLIDLVRDVKPELPDYPVCIECKVR-EIPCLIV 179

Query: 188 VQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLE-----AENDPRLNEIV 242
            + L                    A        + E  VA  LE       +  R+ +++
Sbjct: 180 ERGLPCLGPITVAGCDARCPSYNTACIGCRGPIRDEANVAGELEMLLRKGYDRERILDLM 239

Query: 243 SHLNHVVEEAR 253
           S      +  R
Sbjct: 240 SLFGARYKGLR 250


>UniRef50_B0SCU6 Metal (Ni/Fe) hydrogenase, small subunit n=2 Tax=Leptospira biflexa
           serovar Patoc RepID=B0SCU6_LEPBA
          Length = 273

 Score =  103 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 7/129 (5%)

Query: 35  KRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRS 94
           KR      V  GG N  E E+ A+ + +FD+ER GI+ V SP+HAD ++F+G ++  M  
Sbjct: 136 KRGFLYREVAAGGNNTVESELNASFNSVFDSEREGIRCVASPKHADTIVFSGPISEQMEG 195

Query: 95  PALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLY 154
           P   AW    +P+  I+ G    SGG+F                D+YI G PP P   L 
Sbjct: 196 PLQTAWDVLSEPRALIACGTEAVSGGLFPKGKIPKEP-------DLYISGDPPRPDVILQ 248

Query: 155 GFAMALGLL 163
           GF + +G  
Sbjct: 249 GFRLLIGRF 257


>UniRef50_C0BH99 Hydrogenase (NiFe) small subunit HydA n=1 Tax=Flavobacteria
           bacterium MS024-2A RepID=C0BH99_9BACT
          Length = 384

 Score =  103 bits (257), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/294 (10%), Positives = 58/294 (19%), Gaps = 77/294 (26%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD-------------AERFGIKVVPSPRHAD---- 80
            + + +  G C+GC I      SP  +                  +  V +         
Sbjct: 20  VHAFWIAGGSCDGCSIATVGATSPSVENLLNGTIPGAAKVILHHPVLAVNAGEEFMKPFR 79

Query: 81  -----------ILLFTGAVT-RAMR-----------------------SPALRAWQSAPD 105
                      ++L  G++    M                          +    + +  
Sbjct: 80  LAAKGELGAPFVVLCEGSIMDEGMAAETGGYWSGLGADEDENGDPQPIPSSSWVTRMSEH 139

Query: 106 PKICISYGACGNSGGIFHDLYCVWGG--TDKIVP---------VDVYIPGCPPTPAATLY 154
               ++ G C   GGI               ++            V IPGC P       
Sbjct: 140 AAAVVAVGTCATWGGIPAAANNPTNSASVMDLLGEDYRSTLGLPVVNIPGCAPQGDNITE 199

Query: 155 GF---AMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVK----VDREARRLAGYRY 207
                 M L  L         G       E +H    +    +     +    +      
Sbjct: 200 TIVSVLMFLNGLTPLPEFDELGRPSWLFDETVHRGCTRAGFYEEGNFAEEHGDKECLVEV 259

Query: 208 GRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHVVEEARI 254
           G            +G                    P   +  +          +
Sbjct: 260 GCWGPVVQCNINKRGAINHVGGCMNVGAPCIGCTMPGFPDSFAPFYKTPPGTMV 313


>UniRef50_Q21RP8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=4
           Tax=Proteobacteria RepID=Q21RP8_RHOFD
          Length = 188

 Score =  103 bits (257), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 50/173 (28%), Gaps = 44/173 (25%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP----RH---ADILLFTGAV 88
           R   V  V   GC GC +        LFD     I+   SP    +     DI L  G +
Sbjct: 11  RKLKVATVSLAGCFGCHMSFLDIDERLFDLIEH-IEFDRSPLTDIKQVGACDIGLIEGGL 69

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------------- 122
                       +     K  ++ GAC  +GG+                           
Sbjct: 70  CN--AENVQVLREFRAHCKTLVAVGACAITGGLPAQRNHLDLGQLLTEVYRSRPGLSAGG 127

Query: 123 --------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                     L        ++V VD  +PGCPP+  A  +  +  +      +
Sbjct: 128 AIPNDPELPLLLNKVHPIREVVHVDYSLPGCPPSADAFWHFLSDLMAGRTPHL 180


>UniRef50_B6YSK0 Sulfhydrogenase II, delta chain n=6 Tax=Thermococcaceae
           RepID=B6YSK0_THEON
          Length = 246

 Score =  103 bits (257), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 51/211 (24%), Gaps = 35/211 (16%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERF----GIKVVPS---PRHADILLFTGAVT 89
              +   +   C GC + I      LFD   F       +  S     H D+ L TG V+
Sbjct: 4   KLKLAVFELTDCGGCALNILFLYEKLFDLLEFYEITEFHMATSLSEGSHYDVALVTGTVS 63

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG---------------GIFHDLYCVWGGTD- 133
                      ++       I+ G C   G                ++ D        D 
Sbjct: 64  SQRDLAL--LKEARNHSDYLIALGTCATHGSVQASVEGSIREKLKRVYGDEGNPMRALDS 121

Query: 134 ----KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE---ILHGD 186
               + V VD  +PGCP                +E            +       ++   
Sbjct: 122 KPVVEYVAVDFALPGCPYDKNEVYQVLMDIAKGIEPVKKDYPVCVECKLNEYECVLVKKG 181

Query: 187 MVQPLRVKVDREAR---RLAGYRYGRQIADD 214
           +     +          R      G +    
Sbjct: 182 LPCLGPITYGGCNAACIRSGLGCIGCRGPLP 212


>UniRef50_Q39QE2 F420-non-reducing hydrogenase subunit G n=5 Tax=Geobacter
           RepID=Q39QE2_GEOMG
          Length = 316

 Score =  103 bits (257), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 67/265 (25%), Gaps = 55/265 (20%)

Query: 44  DCGGCNGCEIEIFATLSPLFDAERFGIKV-------VPSPRHADILLFTGAVTRAMRSPA 96
               C+GC + I      +                 V     A + L +GA+       A
Sbjct: 10  WLSDCSGCHVAIVDLHEKILAVLESVTIQRCPVLTDVKDYPKAKLGLVSGAIRTEHDRHA 69

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDL------------------------------- 125
             A +      + I++G+C   GGI                                   
Sbjct: 70  --AIEMRKSCDLIIAWGSCAVYGGIAGAGNVHSRQEIIDAVYIGNKTTATHAPPTKEVSA 127

Query: 126 -YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH-ARGPGELDEQPAEIL 183
                   D ++ VD+Y+PGC P PA         L     +            +  E  
Sbjct: 128 LEPSVSPLDSVIDVDLYLPGCAPHPAFVFDALLALLEGRSPRTATGESVCARCRRKMEKT 187

Query: 184 HGDMVQPLRVKVDREARRLAG---YRYGRQIADDY----------LTQLGQGEEQVARWL 230
             D ++     V    R          G    D             +       QV    
Sbjct: 188 EVDRIRKNSEGVPDPDRCFLSQGYLCMGSVTLDRCMSPCPLNGIPCSGCAGATMQVLAEP 247

Query: 231 EAENDPRLNEIVSHLNHVVEEARIR 255
             +    + E +S L  +  EA +R
Sbjct: 248 NRDIRTEIAERMSRLTEIPREAIVR 272


>UniRef50_Q3M430 NADH ubiquinone oxidoreductase, 20 kDa subunit n=46 Tax=Bacteria
           RepID=Q3M430_ANAVT
          Length = 181

 Score =  103 bits (256), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 51/177 (28%), Gaps = 43/177 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVP------SPRHADILLFTGAVT 89
              +  V  GGC+GC +        L D   +  +   P       P   D++L  GA+ 
Sbjct: 3   RLKLATVWLGGCSGCHMSFLDLDEWLIDLAAQADVVFSPFADIKEYPEGVDVVLVEGAIA 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG------------------------------ 119
                            +I IS+G C  +G                              
Sbjct: 63  N--EEHLTTIKIVRERSQILISFGDCAVTGNVTALRNPLGSAEPVLQRCYIQAVDINPQI 120

Query: 120 ----GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
               GI   L         IVPVD+Y+PGCPP+           L      +  R  
Sbjct: 121 PQEPGIVPPLLDRVTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQGKTPHLSGREF 177


>UniRef50_O28898 Methylviologen-reducing hydrogenase, subunit gamma (VhuG) n=1
           Tax=Archaeoglobus fulgidus RepID=O28898_ARCFU
          Length = 293

 Score =  103 bits (256), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 58/219 (26%), Gaps = 41/219 (18%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP---------SPRHADILLFTGAVTR 90
           V      GC+GC + +      + D  R  +                  D     G +  
Sbjct: 4   VAFYIAHGCSGCTMSMLDLGERMNDF-RMRVAWAAPTLGDGKYDRIPEVDYAFIEGGI-- 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIF---------------------------- 122
            +        +     +  +++G C + GGI                             
Sbjct: 61  GLSEHVEIVRELREKSETLVAFGICASCGGIMGLANLHSKEEILEDVFGSAKSSVGDLRI 120

Query: 123 HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQ-KIHARGPGELDEQPAE 181
            ++       D +V VD YI GCPPTP      F              +   E   +   
Sbjct: 121 PEMLEFVKPLDSVVEVDCYIGGCPPTPEQIYNAFKAIFEGERGWITSGKSVCEFCSRNLS 180

Query: 182 ILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLG 220
              G++ + LRV       +     +G     D +    
Sbjct: 181 EKFGEVSRFLRVPDKECFLKQGILCFGPATQGDCMASCP 219


>UniRef50_Q2H7B9 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2H7B9_CHAGB
          Length = 189

 Score =  102 bits (254), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 54/158 (34%), Gaps = 46/158 (29%)

Query: 15  VPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVP 74
            P +V E   S    L+   ++   ++ +  G    C IE+     P +D +R GI    
Sbjct: 74  RPNSVTEYALSTLDGLINWARQG-SLWPMSFG-LACCAIEMMHLSMPRYDNDRQGIIFRA 131

Query: 75  SPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDK 134
           SPR +D+++  G                                            G D+
Sbjct: 132 SPRQSDVMIVAG--------------------------------------------GVDR 147

Query: 135 IVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           IVPVD+Y+PGCPPT  A  YG       +         
Sbjct: 148 IVPVDIYVPGCPPTAEALQYGIFQLQKKMAAGQRFTRM 185


>UniRef50_Q79IP7 Regulatory n=46 Tax=Proteobacteria RepID=Q79IP7_RALEH
          Length = 347

 Score =  102 bits (254), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 61/278 (21%), Gaps = 65/278 (23%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD--AERFGIKVVPSPRHA---------------- 79
             V  +  GGC GC + +    +  F    +  GI ++  P  +                
Sbjct: 17  LNVLWIQSGGCGGCSMSLLCADTTDFTGMLKSAGIHMLWHPSLSLESGVEQLQILEDCLQ 76

Query: 80  -----DILLFTGAVTRAMR-------------SPALRAWQSAPDPKICISYGACGNSGGI 121
                  L   GA+ R                       + A      ++ G C   GGI
Sbjct: 77  GRVALHALCVEGAMLRGPHGTGRFHLLAGTGVPMIEWVSRLAAVADYTLAVGTCAAYGGI 136

Query: 122 FHDLYCVWGGTDKIVP------------------VDVYIPGCPPTPAATLYGFAMALGLL 163
                                               + + GCP  P       A+    L
Sbjct: 137 TAGGGNPTDACGLQYEGDQPGGLLGLNYRSRAGLPVINVAGCPTHPGWVTDALALLSARL 196

Query: 164 EQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLA-GYR----YGRQIADDYLTQ 218
                    G       +++H    +    +    A + +         G +    +   
Sbjct: 197 LTASDLDTLGRPRFYADQLVHHGCTRNEYYEFKASAEKPSDLGCMMENMGCKGTQAHADC 256

Query: 219 LGQGEEQVAR------WLEAENDPRLNEIVSHLNHVVE 250
             +                +  +P   E     +   +
Sbjct: 257 NTRLWNGEGSCTRGGYACISCTEPGFEEPGHPFHQTPK 294


>UniRef50_B9SD17 NADH-ubiquinone oxidoreductase I subunit j, putative n=1
           Tax=Ricinus communis RepID=B9SD17_RICCO
          Length = 188

 Score =  102 bits (253), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGIFH-DLYCVWGGTDKIVPVDVYIPGCPPTPA 150
           M    +R ++  P+PK  I+ GAC  +GG+F  D Y    G DK++PVD Y+ GCPP P 
Sbjct: 1   MAPSLVRLYEQIPEPKYVIAMGACTITGGMFSTDSYSTIRGVDKLIPVDAYLSGCPPKPE 60

Query: 151 ATLYGFAMALGLLEQKIHARGPGELDE 177
           A +         L ++I+        E
Sbjct: 61  AVIDAITKLRKKLSREIYEDRIRSQPE 87


>UniRef50_B6YU80 Cytosolic NiFe-hydrogenase, delta subunit n=9 Tax=Thermococcaceae
           RepID=B6YU80_THEON
          Length = 265

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 49/225 (21%), Gaps = 50/225 (22%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS-------PRHADILLFTG 86
           ++    +       C GC++        L       I                DI    G
Sbjct: 1   MEGKVRIGFYALTSCYGCQLRFAMMDEILQLLPNAEIVCWYMLDRDSSEDEPVDIAFIEG 60

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF---------------------HDL 125
           +V+           +   + KI ++ GAC   GG+                         
Sbjct: 61  SVST--EEEVELVKKIRENAKIVVAVGACATQGGVQSWEKDKSLEELWKAVYGDGKVKFE 118

Query: 126 YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHG 185
             +    +  + VD  I GCPP     +Y     L     +                   
Sbjct: 119 PKMAEPLENYIKVDYRIYGCPPEKKDFIYAIGTFLVGSWPEDIDYPVCLECRLKGNT--- 175

Query: 186 DMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWL 230
                                   +     +T+ G      +  +
Sbjct: 176 -----------------CILIEKGEPCLGPITRAGCDARCPSYGI 203


>UniRef50_Q2LYD8 Nickel-dependent hydrogenase, small chain n=2 Tax=Bacteria
           RepID=Q2LYD8_SYNAS
          Length = 253

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 60/232 (25%), Gaps = 51/232 (21%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA--ERFGIKVVPSPRH-----ADILL 83
           ++++     V   D   C GC++++      L D       ++             D+ +
Sbjct: 1   MERMLMKPKVAFFDFACCEGCQLQVANLGEALLDILGAIDVVEFREVMSEKWDKNYDVAI 60

Query: 84  FTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLY- 126
             G++T        R  +      + I+YG+C   GG+                +   Y 
Sbjct: 61  VEGSITDEHAE--QRIRKIRDRSAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVYGKDYQ 118

Query: 127 ----CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEI 182
                      ++V VD +I GCP      +     AL  +   +         +     
Sbjct: 119 LFDSKKTRPIHQVVKVDYFINGCPVYHPEVIEVLKCALRGVPYAVPDNPVCSECKL---- 174

Query: 183 LHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEN 234
                              +  Y           T+ G     +        
Sbjct: 175 ----------------NENVCMY-DRGVACLGPWTKAGCNSWCINNGNICYG 209


>UniRef50_B8G3U7 NADH ubiquinone oxidoreductase 20 kDa subunit n=6 Tax=Bacteria
           RepID=B8G3U7_CHLAD
          Length = 177

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 43/173 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAE-RFGIKVVPS------PRHADILLFTGAVT 89
              +  +  GGC+GC + +      L +   +  +   P       P H D+ L  GA+ 
Sbjct: 3   RIRIATIWLGGCSGCHMSLLDLDEWLIELAAQADLVYSPIADVKRFPSHVDVTLIEGAIA 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSG------------------------------ 119
                    A  +  + KI +S+G C  SG                              
Sbjct: 63  NN--EHLELAHIARRNSKIIVSFGDCAVSGNVTALRNPLGSPEQLLQQVYIEHSDPRGKI 120

Query: 120 ----GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
               GI   L        +++PVD Y+ GCPP+           L   + ++ 
Sbjct: 121 PHEPGIVPVLLDKVMPVHQVIPVDYYLSGCPPSAPRIRALLEALLTGRKPEVD 173


>UniRef50_A8UU12 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU12_9AQUI
          Length = 252

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 57/215 (26%), Gaps = 34/215 (15%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRH----ADILLFTGAVT 89
           +K    V       C+GC+       S L++   F    +    +     DI    G+V+
Sbjct: 1   MKNKLRVGVFKLSSCDGCQAIFLDLPS-LWEHLDFRYWFLGKSENKLEPIDIAFVEGSVS 59

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI--------------------FHDLYCVW 129
                 A    +     ++ ++ GAC  SGGI                    F  +    
Sbjct: 60  TQEE--AEFIKEVREKARLLVTIGACATSGGIQALRNFGSLEEFSSVYPKPEFIKVLKRS 117

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
               + V VD  I GCP  P          L     +I +       +    I   D  +
Sbjct: 118 TPISEHVKVDYEIYGCPINPHILENFVKALLHSRRPEIPSYPLCMECKLRGNICVMDAYR 177

Query: 190 PLRVKVDREARRLAG-YRY----GRQIADDYLTQL 219
                +    R   G        G           
Sbjct: 178 IP--CLGPVVRAGCGALCPSVGRGCYGCFGPCKGA 210


>UniRef50_A6UVU9 Coenzyme F420 hydrogenase n=2 Tax=Euryarchaeota RepID=A6UVU9_META3
          Length = 227

 Score =  100 bits (249), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 61/214 (28%), Gaps = 37/214 (17%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAE-------RFGIKVVPSPRHADILLFTGAVTRAM 92
           V  V    C GC + +  T   L D            I        ADI+L  G+V    
Sbjct: 4   VAHVQLSSCCGCLVSLTDTYEKLLDVLGAIDLVYSQTIADAREIPEADIILVEGSVCLDD 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIF---------HDLYCVWGGTDKIVPVDVYIP 143
                 A       KI ++ GAC  +GGI            ++  +    ++V  D+ IP
Sbjct: 64  HHAMEIAQDVGKKAKILVALGACAATGGITRFCRGGQMSKPIHSSFSPITEVVKCDLAIP 123

Query: 144 GCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLA 203
           GCPP+P   +     A+                 + A+             V  +     
Sbjct: 124 GCPPSPEIIVGLITAAIEG------DMEYLAPFSEFAKNNTEACG----CDVIEKVVN-K 172

Query: 204 GYRYGRQIADDYLTQLGQGEEQVARWLEA-ENDP 236
               G                   R +E  E  P
Sbjct: 173 SLCMGC-GC--------CAASCPTRAIEMVEGRP 197


>UniRef50_B4SFA2 NADH ubiquinone oxidoreductase 20 kDa subunit n=10
           Tax=Chlorobiaceae RepID=B4SFA2_PELPB
          Length = 258

 Score =  100 bits (248), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 58/221 (26%), Gaps = 48/221 (21%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERF-GIKVVP--SPRH---ADILLFTGAVT 89
               +   D   C GC++++    S L D      I+     S       DI L  G+++
Sbjct: 13  ERLKIASFDFTCCEGCQLQLANRESTLADFLNLLDIRNFRELSSEQHDDYDIALIEGSIS 72

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLY---CVWG 130
           R       R  +     KI +++G C   GGI                +  +        
Sbjct: 73  RQDE--VERLLKIRQQAKILVAFGTCACFGGINSLKNRFPAREMIDAVYPGMPIETLPVR 130

Query: 131 GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQP 190
               +V VD+ IPGCP             +   +  +         +             
Sbjct: 131 KISDVVKVDLSIPGCPVDKREVERIVVSLVRGSQITLPKYPVCVECKAQLNT-------- 182

Query: 191 LRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLE 231
                         +  G  I    +T+ G           
Sbjct: 183 ------------CLFELGE-ICLGPITRAGCNAVCTTGKTP 210


>UniRef50_A5UM99 Coenzyme F420-reducing hydrogenase, gamma subunit, FrhG n=3
           Tax=Methanobacteriaceae RepID=A5UM99_METS3
          Length = 276

 Score =  100 bits (248), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 52/173 (30%), Gaps = 19/173 (10%)

Query: 13  IPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDA---ERFG 69
           I     V+E+ A +  +  +       +  +   GC G  + +      + D    E   
Sbjct: 23  IESAPEVEETAAPVAETKQETATNKPRIGYIHLSGCTGDGMSLTENYD-ILDVVLTEMVD 81

Query: 70  IKV------VPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF- 122
           I        +      D+ L  G+V            ++     +  ++G+C  +G    
Sbjct: 82  IVYGQTLVDLWEMPEMDLCLIEGSVCLQDEHSVHELLEAREKSALICAFGSCALNGCFTT 141

Query: 123 --------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                      +  +     +V VDV +PGCP  P               + +
Sbjct: 142 YARGGQQAQPKHESFLPISSLVKVDVALPGCPVAPEMIAKTVVALCNGDMEYL 194


>UniRef50_C8S807 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Ferroglobus
           placidus DSM 10642 RepID=C8S807_FERPL
          Length = 299

 Score = 99.7 bits (247), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 62/254 (24%), Gaps = 69/254 (27%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS-----------PRHADILLF 84
           +   +      GC+GC +  F        +ERF +   P                D+   
Sbjct: 2   KKIRLAFYTASGCSGCILSFFDLEEFFLSSERFSVVWAPMFTNSKLEDLEKIERIDLTFI 61

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL------------------- 125
            G++  +     ++        +  ++ G C   GG+                       
Sbjct: 62  EGSIRLSEHEEIVKI--LREKSEKVVALGTCAVFGGVPGLSNFYSDEEILSDVFDSDENA 119

Query: 126 ----------YCVWGG--------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                     Y +            ++++ VD ++PGCPP+    L              
Sbjct: 120 PKPRTLLDGKYELTLPEFKDEMKRVEEVIEVDHFVPGCPPSKNQLLKII----------- 168

Query: 168 HARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
                 E        +     + +        +R      GR         L QG     
Sbjct: 169 -DFDFEERWIVEKTSVCSVCPRKVEEIKVSAVKRAFEKDDGR-------CFLLQGILCFG 220

Query: 228 RWLEAENDPRLNEI 241
                  +    ++
Sbjct: 221 PLTPGNCEAACIKV 234


>UniRef50_B1Y6B2 NADH ubiquinone oxidoreductase 20 kDa subunit n=3
           Tax=Proteobacteria RepID=B1Y6B2_LEPCP
          Length = 313

 Score = 98.9 bits (245), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 58/254 (22%), Gaps = 60/254 (23%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFD--AERFGIKVVPSP--------------------R 77
           +  +  G C G  + I +  SP  +   + + I+++  P                     
Sbjct: 4   LLWLQTGSCGGDSLAILSADSPSLEQLLDSYSIELLWHPSLSNGHARRLDRVIDQILAGE 63

Query: 78  HA-DILLFTGAV-----------TRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL 125
            A DIL   G++                +        A      ++ G C   GGI    
Sbjct: 64  QALDILCVEGSIITGPRGTGLYDPWRGGAKMNLVRDLAAKAGAVVAMGTCAAYGGIHAAP 123

Query: 126 YCV--WGGTDKIVP----------------VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                  G                        + + GCP  P A      +A       +
Sbjct: 124 PNPSDCTGLQFDHEQPGGLLGPGWRSRSGMPVINVAGCPAHPHAMTQT--LAALAAGLPL 181

Query: 168 HARGPGELDEQPAEILHGDMVQPLRVKVDRE----ARRLAGYR-YGRQIADDYLTQLGQG 222
                       + ++H    +    + + E      +   +   G Q            
Sbjct: 182 ELDAIHRPVSHFSTMVHQGCTRNEYHEYNIEDSTPGGKACMFFNLGCQGPLT-RAVCNTD 240

Query: 223 EEQVARWLEAENDP 236
                        P
Sbjct: 241 LWNGVSSKTRAGVP 254


>UniRef50_A0LP54 NADH ubiquinone oxidoreductase, 20 kDa subunit n=7
           Tax=Deltaproteobacteria RepID=A0LP54_SYNFM
          Length = 324

 Score = 98.5 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 61/245 (24%), Gaps = 68/245 (27%)

Query: 44  DCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP-------------------RHADILLF 84
               C GCEI +        +  +  I++V  P                     ADI + 
Sbjct: 9   SLSSCAGCEISMLNMGGLFLELLK-EIRIVHMPLLFDHKYFGQAGEENFIGIPEADIGIV 67

Query: 85  TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH--------------------- 123
           +G +          A +     +I ++ G C   GGI                       
Sbjct: 68  SGGIRN--EEQLEVALKVRAQCRILVALGTCATHGGIPALMNRYSDEDLFRRYYRTSETT 125

Query: 124 ---DLYCVWGG--------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
                               D+   VDVY+ GCPP P      F   L     ++  +  
Sbjct: 126 EAAAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPDYLGAMFRTLLDGQWPEMPTKSV 185

Query: 173 GELDEQPAEILHGDMVQPLRVK-VDREARRL--AGYRYGRQIADDYLTQLGQGEEQVARW 229
                                K   ++ RR   +      +   +    L QG   +   
Sbjct: 186 C-----------DTCPTRREGKGNVQKIRRFTRSARFQNEKPLSEMKCLLEQGLLCMGPV 234

Query: 230 LEAEN 234
             A  
Sbjct: 235 TRAGC 239


>UniRef50_A0LKF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKF2_SYNFM
          Length = 300

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 62/241 (25%), Gaps = 57/241 (23%)

Query: 48  CNGCEIEIFATLSPLFD-AERFGIKVVP-----------------SPRHADILLFTGAVT 89
           C GCE+ I      L D  ER  I   P                 S   AD+ + +G + 
Sbjct: 14  CAGCEVAILDQGELLLDILERISIVHAPILMDSKYRDPAGDSDVVSIPRADVGIVSGGIR 73

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIF--------------------------- 122
                    A        I I+ G+C   GGI                            
Sbjct: 74  T--EHGLAVAKAVRESCDILIANGSCACMGGIPSLANLVPPDVLKQGVPNLEHGVEDGDF 131

Query: 123 --HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPA 180
               L       +++VPVD+++PGCPP            L      +             
Sbjct: 132 ELPPLTARVAAINEVVPVDIFLPGCPPPTHLFAAALQAVLEGRSFDLPEDTVCNEC---- 187

Query: 181 EILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNE 240
                   +   V  D   +     R       D    + QG   +     +    R  +
Sbjct: 188 ----SKTKEKRTVFADNGLQFPEMLRPLETPPLDKRCLIEQGFFCMGAATRSGCGARCTQ 243

Query: 241 I 241
           +
Sbjct: 244 V 244


>UniRef50_C5S9B0 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Allochromatium vinosum DSM 180 RepID=C5S9B0_CHRVI
          Length = 251

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 55/219 (25%), Gaps = 52/219 (23%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP------LFDAERFGIKVVPSPRHADILLFTGAVTR 90
              V   +   C GC++ +  TL        + +  +F   +        I    G+ TR
Sbjct: 2   KPKVAFFEFTSCEGCQLTVLDTLQRHPELLEVIEIVQFREAMSERGEDYQIAFIEGSCTR 61

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGI----------------------FHDLYCV 128
                  +  +     +I ++ GAC + GGI                      + + Y  
Sbjct: 62  PSDEA--KIREIREQAQIVVALGACAHLGGINAIRNRMPLEQTREYVYGDKKDWFETY-P 118

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMV 188
                 ++ VD  IPGCP             L   +  I         +           
Sbjct: 119 ARPLSAVIEVDAVIPGCPIDRKEFATAVTHLLQGRKPAIPDYPLCIDCKL---------- 168

Query: 189 QPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
                                Q     +T+ G      A
Sbjct: 169 -----------TENVCMFLRGQTCLGPVTRAGCEAICPA 196


>UniRef50_UPI0001C420D3 coenzyme F420 hydrogenase gamma subunit FrhG n=1
           Tax=Methanobrevibacter ruminantium M1
           RepID=UPI0001C420D3
          Length = 319

 Score = 97.8 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 67/238 (28%), Gaps = 34/238 (14%)

Query: 31  LKKIKRSAYVYRVDCGGCNGCEIEIFA-------TLSPLFDAERFGIKVV--PSPRHADI 81
           ++K+     +  +   GC G  + +          L+ + D    G  +V        D+
Sbjct: 84  VEKVADKPKIGYIHMSGCTGDGMSLTENYDILSTLLTDMVDIVY-GTTLVDLWEMPEMDL 142

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGG---------IFHDLYCVWGGT 132
            L  G+V            +      +  ++G+C  +G          +    +  +   
Sbjct: 143 ALVEGSVCLQDEHSVKELMEVREKAGLVCAFGSCAMTGCFTRYARGGQLAQPKHESFVPI 202

Query: 133 DKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLR 192
             +V VD  IPGCP +P          +              + +  A  L         
Sbjct: 203 SDLVKVDCAIPGCPASPEIIAKVVVALING-----DMDYLQPMLDMAACNLACGC----D 253

Query: 193 VKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVE 250
           ++ +  ++ L             +        ++     + N  R  +  +   H   
Sbjct: 254 LQTNVVSKALCC------GCGTCVLACPTRALEMVEGRPSHNKNRCIKCGACTTHCPR 305


>UniRef50_B1ZXG1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Opitutus
           terrae PB90-1 RepID=B1ZXG1_OPITP
          Length = 334

 Score = 97.0 bits (240), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 58/260 (22%), Gaps = 64/260 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVPSP-----RHADIL-------- 82
              V    C  C GCE  I      +    E   I   P       +  D L        
Sbjct: 3   KPKVAFYWCAACGGCEEAIVDFAEDILGVIEAVDIVFWPVAMDFKKKDVDALPDQGITAT 62

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------- 122
              GA+  + +    +        +  I+YGAC + GGI                     
Sbjct: 63  FLNGAIRTSEQEEMAQL--LRRKSQFLIAYGACAHLGGIPGLANQFDREQLLSYVYEQTP 120

Query: 123 -----------------------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMA 159
                                   +        D++V VD YIPGCPPTP  T       
Sbjct: 121 TIDNPTHVRPQPAHQNNGHSLTLPEFRHTVRSLDQVVAVDYYIPGCPPTPKITKAAITAL 180

Query: 160 LGLLEQKI-----HARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADD 214
           L                      +             +     +            +   
Sbjct: 181 LEGKLPPRGSVLAPDVALCNECARKPSKPATLSFTEFKRPHLAKIDPDLCLLAQGFVCMG 240

Query: 215 YLTQLGQGEEQVARWLEAEN 234
             T+ G      A  +    
Sbjct: 241 PATRAGCEALCPAGNMPCTG 260


>UniRef50_Q00393 Coenzyme F420 hydrogenase subunit gamma n=3 Tax=Methanococcus
           RepID=FRHG_METVO
          Length = 243

 Score = 96.2 bits (238), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 60/236 (25%), Gaps = 46/236 (19%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDA----------------------ERFGIKVVPS 75
             +  +   GC GC I +  T   L D                       +   +     
Sbjct: 2   VKIAHIHMSGCTGCLISLTDTYEKLLDILGSVELVYALTLTGEKTEITETDDKILIERDI 61

Query: 76  PRHADILLFTGAVTRAMRSPALRAWQSAPDPKI-CISYGACGNSGGIFH---------DL 125
           P   DI L  G+V             +  + K   ++ GAC  SGG+             
Sbjct: 62  PGGIDIALVEGSVCLDDHHSMDDILTTRKNSKKSLVALGACAASGGVTRFRRVGQMSQPS 121

Query: 126 YCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHG 185
           +  +     ++ VD+ +PGCPP+  + +     AL             E   + A+    
Sbjct: 122 HASFVPIGDVIKVDLALPGCPPSTESIVKLLTAALEG------DMEYLEPFAEIAKYGKD 175

Query: 186 DMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEI 241
                       +  +    +                   +       N     + 
Sbjct: 176 AC--------GCDVIKEVINKSLCMGCGTCAAACQVNAIDMVEAKPNINSEFCIKC 223


>UniRef50_D1Z1F3 Coenzyme F420 hydrogenase subunit gamma n=1 Tax=Methanocella
           paludicola SANAE RepID=D1Z1F3_METPS
          Length = 235

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 54/236 (22%), Gaps = 41/236 (17%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVPSPRHA------DILLFTGAVT 89
                 V    C+GCEI        L D  +   I+ +   + A      DI+   GA  
Sbjct: 3   KPKFAYVHLAACSGCEISFLDNFERLLDMMDMVDIEYMTLIKDATDIPKVDIVFVDGAAC 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGN---------SGGIFHDLYCVWGGTDKIVPVDV 140
                      ++  +    +++G C +          G +    +  +    ++V VD 
Sbjct: 63  LQSEDAVETLKKARENATYLVAWGGCSSTATINNFSRGGQLPQPQHESFPPIKRLVKVDA 122

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
            +PG PP P          +                          +       +   A 
Sbjct: 123 SVPGSPPGPGMAYNVIRAFVEGDL--------------------DYLKYLSSYSLGGFAC 162

Query: 201 RLAGYRY-----GRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEE 251
               ++                        +          R  +  +        
Sbjct: 163 GCDLWKDIVDNGLCIGCGACAMACPTRAITMVEGRPNNVFERCVKCGACYAQCPRS 218


>UniRef50_Q59113 Hydrogenase small beta subunit n=2 Tax=Bacteria RepID=Q59113_9BACT
          Length = 179

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 52/173 (30%), Gaps = 44/173 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSP-------RHADILLFTGAVT 89
            A V       C GC +        L D  +  ++++ SP        + D+ + +G + 
Sbjct: 3   KAKVATFWLEACAGCHMSFLDLDERLIDLFQ-NVEILFSPIVDAKDIPNIDVGVLSGGL- 60

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI---------------------------- 121
                    A +     K  +++G C   GGI                            
Sbjct: 61  -GNVEEVELAKKMRERCKYLVAWGDCAVFGGINCMRNFIPKDVVLREGYIETASTVNPQG 119

Query: 122 ------FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIH 168
                   +L       D  V VDVY+PGCPP      Y F   L     K+ 
Sbjct: 120 IVPSEDIPELLPRALPIDYEVKVDVYVPGCPPDADTIYYVFKELLAGRVPKVP 172


>UniRef50_Q0W6U0 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing
           hydrogenase), gamma subunit n=3 Tax=Euryarchaeota
           RepID=Q0W6U0_UNCMA
          Length = 306

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 66/272 (24%), Gaps = 57/272 (20%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADI-------LLFTGAVTR 90
             +       C GC + +      L +     +++V SP   D+        +       
Sbjct: 2   IKLATEPLASCAGCHMSLLDLHEDLLELLN-KVEIVYSPILMDVKEPPEDIDIAIIGGAI 60

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDL------------YCVWGG------- 131
             +    R  +     K  I++G C   GG+                Y    G       
Sbjct: 61  RNKENMERVKKLRQRAKTVIAFGTCACYGGVSGLSILHSRDEILNGVYTNRQGTTTNVIP 120

Query: 132 -------------TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
                           ++ VD YI GCPP            +      +  +      ++
Sbjct: 121 NQDIPDLLYRGYAVGDVIKVDYYITGCPPKEFFLRQILLPLIEGRIPDLQKKSVCSECDR 180

Query: 179 PAEILHGDMVQPLRVKVDREARRLAGY-----RYGRQIADDY----------LTQLGQGE 223
              ++    ++     V  E  +           G                     G   
Sbjct: 181 EMVLVKDWKIKRRYEGVPEE--KTCLLGQGYICLGSVTFGRCHALCTHHGIPCHGCGGPS 238

Query: 224 EQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
             V R    +    L   + HL  + ++   +
Sbjct: 239 LDVLREPCRDIYNTLVMRIQHLTELPQQEIEK 270


>UniRef50_Q2KJQ3 HoxY n=4 Tax=Proteobacteria RepID=Q2KJQ3_CHRVI
          Length = 180

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 48/170 (28%), Gaps = 42/170 (24%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS--------PRHADILLFTGAV 88
              V      GC+GC +        L +     +++V S        P   D+ +  G++
Sbjct: 6   KITVATAWLDGCSGCHMSFLDLDERLIELVEH-VEIVYSPLVDTKELPARVDVGILEGSI 64

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------------- 122
           +        +A          +S G C  +G +                           
Sbjct: 65  SSEDD--LEKARLFRERCTRLVSLGDCAVTGNVPAMRNHFKLADVFDRAYRENVTLQPQI 122

Query: 123 -----HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                  L          V VDV++PGCPP+  A  +  +  +       
Sbjct: 123 PTRRVPALLTPVKPVHGEVKVDVFVPGCPPSADAIWHVLSELIAGRMPDP 172


>UniRef50_B5YFX1 F420-non-reducing hydrogenase subunit G n=1 Tax=Thermodesulfovibrio
           yellowstonii DSM 11347 RepID=B5YFX1_THEYD
          Length = 318

 Score = 94.3 bits (233), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 67/263 (25%), Gaps = 67/263 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAE-RFGIKVV-------------PSPRHA-DI 81
              +     GGC GC+I +      L D      I                  P  + D+
Sbjct: 3   KPKLAYYLAGGCGGCDIAVVDISEMLVDVALAVDIVFWAPTVADVKYKDLEAMPDGSIDV 62

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH------------------ 123
            LFTG V  +      +        K+ I++G C   GGI                    
Sbjct: 63  GLFTGNVRNSEHEHIAKV--LRNKCKVLIAFGICAACGGIKGLVNLHTTDELLDKAYVNT 120

Query: 124 ---DLYCV----------------------WGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
              D                              D++V VD YI GCPP        F  
Sbjct: 121 FSTDNPNKELPQTTCVVDGKYELTLPTLMYARPLDEVVKVDYYIGGCPPHYEHVKAAFTA 180

Query: 159 ALGLLEQKI-----HARGPGELDEQPA--EILHGDMVQPLRVKVDREARRLAGYRYGRQI 211
            L              +   E+ ++    +     +   ++  +D              +
Sbjct: 181 LLSGQLPPPGSWITMGKAVCEVCDRNPVLKGKPKKLATEVKRTIDGAPSEDGCLLEEGYL 240

Query: 212 ADDYLTQLGQGEEQVARWLEAEN 234
               +TQ   G +  A  +    
Sbjct: 241 CLGPVTQGDCGAKCPAANIPCRG 263


>UniRef50_C0QP84 Putative [NiFe] hydrogenase, delta subunit n=1 Tax=Persephonella
           marina EX-H1 RepID=C0QP84_PERMH
          Length = 249

 Score = 93.2 bits (230), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 53/216 (24%), Gaps = 51/216 (23%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAE---RFGIKV----VPSPRHADILLFTGAVTRAM 92
           V       C+GC+I  F     L   E   R    +           DI    G+V+   
Sbjct: 4   VGIFKFASCDGCQISFFDISEMLSHLEEKVRIKYFIEGQDRNEFERFDISFIEGSVSTPE 63

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFH---------------------DLYCVWGG 131
           +    +  +     +  ++ GAC +SGGI                               
Sbjct: 64  QE--EKVKKIRDVSEYVVTIGACSSSGGIQSVRNFSDYKDIVCSVYPKPEMIKSLERSRP 121

Query: 132 TDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPL 191
               + VD  I GCP    A L      +   +            ++             
Sbjct: 122 VSDYIDVDFEIRGCPINKEALLEVIYSVILGKKPYNPEYPVCMECKRKG----------- 170

Query: 192 RVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
                          +G +     +T  G G    +
Sbjct: 171 ---------NPCVIIFG-KPCLGSITSAGCGAVCPS 196


>UniRef50_Q0W2X8 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=uncultured methanogenic archaeon RC-I
           RepID=Q0W2X8_UNCMA
          Length = 232

 Score = 93.2 bits (230), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 31/231 (13%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVPSPRHA------DILLFTGAVT 89
                 V    C+GCEI        + D  +   I  +     A      D+L   GA  
Sbjct: 3   KPKFAYVHLAACSGCEISFLDNFERVLDMMDMVDIDYMTLIADATEIPKVDLLFVDGAAC 62

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGN---------SGGIFHDLYCVWGGTDKIVPVDV 140
              +       ++  +    +++G C +          G      +  +    ++V VD 
Sbjct: 63  LQSKESVESLKKARENTGFLVAWGGCSSTATINNFSRGGQSPQPQHESFPQISRLVKVDA 122

Query: 141 YIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREAR 200
           ++PG PP P          +       + +                + + +   +     
Sbjct: 123 FVPGSPPGPEMAYNVIRAFVEGDTD--YLKYLTTEGMGGFACGCDLISKIIENAL----- 175

Query: 201 RLAGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEIVSHLNHVVEE 251
                                    + +   + N  R  +  +        
Sbjct: 176 --------CIGCGACAFACPTRAIDMVQGRPSINWERCVKCGACYAQCPRS 218


>UniRef50_B5EQ53 NADH ubiquinone oxidoreductase 20 kDa subunit n=10
           Tax=Proteobacteria RepID=B5EQ53_ACIF5
          Length = 265

 Score = 93.2 bits (230), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 56/227 (24%), Gaps = 45/227 (19%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERF-------GIKVVPSPRHADILLFTGAVT 89
              +       C+GC++        L                 V      DI    G+V+
Sbjct: 5   KPRLAVHKFSSCDGCQLAFLNLGEDLLRLAELVEIVHFAEAGPVDPDAVVDIAFVEGSVS 64

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFH---------------------DLYCV 128
                   R  +   + +  IS GAC  +GG+                            
Sbjct: 65  TPEDE--ERIQKIRKNSRHLISIGACATAGGLQALRNLADGPGWIAEIYAQPEHIHSLAT 122

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMV 188
                  VPVD+ + GCP      L      L  +   +         ++  + +   + 
Sbjct: 123 STPIAAHVPVDLELWGCPVNGRQVLGAVRALLFEVVPALEKDKVCLECKRH-QAVCVLVA 181

Query: 189 QPLRVKVDREARRLAGYRYGRQIADDYLTQLGQ-GEEQVARWLEAEN 234
           +                  G            + G +  A +  AEN
Sbjct: 182 K-------------GLPCMGPVTLTGCGALCPRFGRDCYACYGPAEN 215


>UniRef50_UPI0000E81815 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
           RepID=UPI0000E81815
          Length = 187

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 54/173 (31%)

Query: 7   PRDANGIP----VPMTVDESIASMKASLLKKIKR-SAYVYRVDCGGCNGCEIEIFATLSP 61
           P+ +  +P    VP +  E I +    L+   +R S +   +    C             
Sbjct: 63  PKSSAVVPKKSYVPTSRGEYIVTKLDDLINWARRTSLWPSMLAQQNC------------- 109

Query: 62  LFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 121
                                         +    L    + P+         C N GG 
Sbjct: 110 -----------------------------HLHPALLGLSAAEPEDG-------CANGGGY 133

Query: 122 FHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGE 174
           +H  Y V  G D+IVPVD+Y+PGCPPT  A LYG       ++++   +    
Sbjct: 134 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRERKLQIWYR 186


>UniRef50_Q2IH66 Methyl-viologen-reducing hydrogenase, delta subunit n=4
           Tax=Anaeromyxobacter RepID=Q2IH66_ANADE
          Length = 491

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 61/262 (23%), Gaps = 67/262 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATL---SPLFDAERFGIKVVPSPR-----------HADIL 82
              V       C GCE  +       + L +     +  V +               D+ 
Sbjct: 168 KPRVAFYWNASCGGCEEAVVDLGDGFAGLLERVEVVLWPVATDHKRADVEALPDGGIDLA 227

Query: 83  LFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI----------------FHDLY 126
              GAV    +     A       +  +++GAC + GG+                +    
Sbjct: 228 FVNGAVRLDEQE--EWARLLRRKARTVVAFGACAHLGGVVGLGNLSEPEALLEAAYRAPP 285

Query: 127 CVWGG---------------------------TDKIVPVDVYIPGCPPTPAATLYGFAMA 159
            V                                 +V VD  IPGCPP+PA         
Sbjct: 286 SVSNPEAPLPGGPVRADGATLSLPVLLPRTLTLADVVSVDYTIPGCPPSPAVVQAALDAL 345

Query: 160 LGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQL 219
           LG                 P   L  D  +             A  R      D  L  L
Sbjct: 346 LGDAPPPR------GAVLAPDVSLCEDCPRKG--SRPERIELHALRRLATSAVDPELCFL 397

Query: 220 GQGEEQVARWLEAENDPRLNEI 241
            QG   +         P   E 
Sbjct: 398 AQGLVCMGPATRQGCQPGCVEA 419


>UniRef50_B8ERX2 Hydrogen dehydrogenase n=1 Tax=Methylocella silvestris BL2
           RepID=B8ERX2_METSB
          Length = 190

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 46/172 (26%), Gaps = 43/172 (25%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSP---LFDAERFGIKVVPS----PRHADILLFTGAVT 89
              +      GC GC + +         L D     +          R  D+    G  +
Sbjct: 13  KPRLATCSLTGCFGCHMSLLDIDERILELIDLVDLDVSPFDDKKSFDRPVDVGFVEGGCS 72

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV--------------------- 128
                      +     +I +S GAC  +GG+      V                     
Sbjct: 73  N--EYNVKELIEFRKHCRILVSVGACAINGGVPAMRNTVGLRECLEAVYLHGVSLEGGGM 130

Query: 129 -------------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
                           + ++V +D ++PGCPP+  A        L   E  +
Sbjct: 131 IPNDEDLPLLLDRVYPSHEVVKIDYFLPGCPPSGDAIWAALKALLTGTEPAL 182


>UniRef50_Q8TXX1 Coenzyme F420-reducing hydrogenase, gamma subunit n=1
           Tax=Methanopyrus kandleri RepID=Q8TXX1_METKA
          Length = 238

 Score = 91.6 bits (226), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 64/237 (27%), Gaps = 21/237 (8%)

Query: 39  YVYRVDCGGCNGCEIEIF-ATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPAL 97
            V  +    C  C   +         +     ++       ADIL   GAV  A      
Sbjct: 2   KVAVLSLMACGTCARNLEEVCHEEGHEVVWSNLEGDEGEPDADILFVEGAVDFADAETLE 61

Query: 98  RAWQSAPDPKICISYGACGNSGGIF--------HDLYC-VWGGTDKIVPVDVYIPGCPPT 148
           +  ++A      +S G+C  +GG           D Y        K V  D  I GCPPT
Sbjct: 62  KLEEAASAVSTVVSLGSCAATGGFERHVIGMRDPDRYHFTVFPAAKFVETDYAINGCPPT 121

Query: 149 PAATLYGFAMALGLLEQKIHARGP--GELDEQPAEILHGDMVQ--PLRVKVDREARRLAG 204
                          E ++       G+      E+         P+   +    + L  
Sbjct: 122 TDVIASFLRALEEENEDELRPYEVLSGDFHGLTPELSAPVTGPTVPVEDVLLTSNKDLCL 181

Query: 205 YRYGRQI-ADDYLTQLG-QGEEQVARWLEAENDP-----RLNEIVSHLNHVVEEARI 254
                 I  D +    G       A  +E +  P     R     +         RI
Sbjct: 182 GCDLDVIEKDLFCVGCGTCAASCPAWAIEMDEKPVIRQERCVRCGTCFVSCPRSFRI 238


>UniRef50_Q2J4E9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=29 Tax=Bacteria
           RepID=Q2J4E9_FRASC
          Length = 278

 Score = 90.1 bits (222), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 52/218 (23%), Gaps = 33/218 (15%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAE---RFGIKVVPSPR----HADILLFTGAVT 89
              +       C+GC++ +      L            +  S        D+ L  G+VT
Sbjct: 17  RPRLAVWKFASCDGCQLTLLDCEDELLSLAGEIDVSYFLEASSATVDGPYDLSLVEGSVT 76

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGI---------------------FHDLYCV 128
                   R  Q     +  ++ GAC  +GGI                     +      
Sbjct: 77  TEQD--VERIHQVRAASRRLVTIGACATAGGIQALRNFADVGDFLAAVYATPAYVSTLAT 134

Query: 129 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAE---ILHG 185
                  V VD  + GCP  P   L   +  L      I +       ++      ++  
Sbjct: 135 STPISTHVRVDFELQGCPINPRQLLEVISAFLARRRPNISSSAVCTECKRRGTVCVMVAH 194

Query: 186 DMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGE 223
                  V           Y  G       +       
Sbjct: 195 GTPCLGPVTHAGCGAICPAYHRGCYGCFGPMESPNTPA 232


>UniRef50_P22319 NAD-reducing hydrogenase hoxS subunit delta n=6 Tax=Bacteria
           RepID=HOXY_RALEH
          Length = 209

 Score = 89.7 bits (221), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 46/190 (24%), Gaps = 45/190 (23%)

Query: 22  SIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS------ 75
               M  +L    +    V  +   GC GC +        L         +  S      
Sbjct: 15  PATPMDPALAANREGKIKVATIGLCGCWGCTLSFLDMDERLLPLLEKVTLLRSSLTDIKR 74

Query: 76  -PRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFH----------- 123
            P    I    G V+               +  I IS GAC   GG+             
Sbjct: 75  IPERCAIGFVEGGVSS--EENIETLEHFRENCDILISVGACAVWGGVPAMRNVFELKDCL 132

Query: 124 -DLY------------------------CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
            + Y                               ++V +D +IPGCPP   A       
Sbjct: 133 AEAYVNSATAVPGAKAVVPFHPDIPRITTKVYPCHEVVKMDYFIPGCPPDGDAIFKVLDD 192

Query: 159 ALGLLEQKIH 168
            +      + 
Sbjct: 193 LVNGRPFDLP 202


>UniRef50_C7NU23 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Halorhabdus
           utahensis DSM 12940 RepID=C7NU23_HALUD
          Length = 191

 Score = 89.7 bits (221), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 50/175 (28%), Gaps = 45/175 (25%)

Query: 40  VYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPS--------PRHADILLFTGAVTRA 91
           V  V  GGC+GC +E       L D     + +V S           AD+ +  G VT  
Sbjct: 17  VATVCLGGCSGCHMEFLNVDHGLVDLVE-EVDIVASHMIVDEKGVPEADVGIAEGVVTNE 75

Query: 92  MRSPALRAWQSAPDPKICISYGACGNSGGI----------------------------FH 123
                    +   +    +++G C    GI                            F 
Sbjct: 76  ENVEVAE--ELRENCDTVVAWGDCAALRGIMSLRNYQDRDEMLEETFMGEADDESEVPFG 133

Query: 124 DLYCV------WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGP 172
           D   V          D+ + VDVY+PGCPP                  +I     
Sbjct: 134 DDEGVPKLLEDARPLDEYIDVDVYVPGCPPDAEVMKESLEALARGETPEIEGDKL 188


>UniRef50_C1GND6 NADH-ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Paracoccidioides brasiliensis Pb01
           RepID=C1GND6_PARBA
          Length = 159

 Score = 88.9 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 1   MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLS 60
           +S L   R+A  I   +++ E        ++   +    ++ +  G    C +E+ A   
Sbjct: 16  VSTLGVIREAERISSLISLQEEKNGSIDKVVNWAREG-SLWPLSFG-LACCNMEMMAVSM 73

Query: 61  PLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS 102
           P +D +R G     SPR +D+++   AVT+            
Sbjct: 74  PRYDQDRLGTIFRASPRQSDVIIVADAVTKQDGPRLAVTRGQ 115


>UniRef50_C8WGI4 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Eggerthella
           lenta DSM 2243 RepID=C8WGI4_EGGLE
          Length = 261

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 61/225 (27%), Gaps = 51/225 (22%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVV------PSPRHADILLFTGAVTR 90
             V  V    C GC+++I    + L D   +  ++        P P   D+ +  GAVT 
Sbjct: 15  PRVVVVGLASCFGCQLQITNAEAHLLDVLGQIDLRYWQLASSDPMPEDFDVAIIEGAVTT 74

Query: 91  AMRSPALRAWQSAPDPKICISYGACGNSGGI-------FHDLYCVW-------------- 129
                              I+ GAC  + GI       F +                   
Sbjct: 75  EESEA--TVRSLREKAGAIIAVGACATTAGIPGMAAEGFLERPGQVYDRVPSACGDMVAP 132

Query: 130 GGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQ 189
                ++ VD  +  CP      +     AL            G     P+  + GD  +
Sbjct: 133 RAVGAVIDVDFEVRACPIDSYDFIDVLQRAL-----------YGSNKTYPSRTMCGDCKR 181

Query: 190 PLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEN 234
                        + +    Q+    +T  G G + V        
Sbjct: 182 N----------ETSCFFGKGQLCLGLVTTAGCGAKCVNLGRPCNG 216


>UniRef50_B5EBV9 NADH ubiquinone oxidoreductase 20 kDa subunit n=5 Tax=Geobacter
           RepID=B5EBV9_GEOBB
          Length = 251

 Score = 87.4 bits (215), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 52/223 (23%), Gaps = 46/223 (20%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATL------SPLFDAERFGI-KVVPSPRHADILLFTGAV 88
               +       C+GC++ +          +  FD   F + + V      D  +  GAV
Sbjct: 2   NRPRLAIAGLTACSGCQLTLLNCEDELAQVAARFDLVSFPMAESVEGGAPFDAAIVEGAV 61

Query: 89  TRAMRSPALRAWQSAPDPKICISYGACGNSGGI-----------------FHDLYCVWG- 130
           +          ++     ++ ++ G C   GG+                 + D       
Sbjct: 62  STPGD--LANLFRLRNSSRLLVALGTCAIFGGVAAMNNGVSTREELVAAVYGDGEKTVES 119

Query: 131 ----GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
                    V VD  I GCPP     +      L      +             E L   
Sbjct: 120 FAPAPLTNFVSVDFSITGCPPEKQEVMALLCALLNGTLPPLATYPVCTECRSR-ENLCLL 178

Query: 187 MVQPLRVKVDREARRLAGYRYGRQIADDY-LTQLGQGEEQVAR 228
           + +                  G  I           G      
Sbjct: 179 LERKE-------------LCLGPIIQGGCNARCPATGIVCEGC 208


>UniRef50_A0L609 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Magnetococcus sp. MC-1 RepID=A0L609_MAGSM
          Length = 282

 Score = 87.0 bits (214), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 56/245 (22%), Gaps = 50/245 (20%)

Query: 36  RSAYVYRVDCGGCNGCEIEIFATLSPLFDAE-RFGI--KVVPSPRHAD------ILLFTG 86
           +   V      GC G ++ I    + L     R  I   ++ S + +D      + +  G
Sbjct: 10  KKLRVGIYSFTGCAGDQLAILNDTTVLLGLAQRAEICSFIMASSQESDQEGRLDLAIVEG 69

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCV------------------ 128
           ++       AL   +   D    ++ G C   GG+                         
Sbjct: 70  SICSEQERTALEKLRQRSDA--LMALGTCAVWGGLPAMNAKTIPIHTMKEQVYGDSTVFP 127

Query: 129 ----WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILH 184
                    + V VD  + GCP             L  +                     
Sbjct: 128 GAREAEPLSRFVKVDYAVTGCPIEIDEFAQVVTAILNGVRPVQTDASVCSECRIAENRCL 187

Query: 185 GDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQ-GEEQVARWLEAENDPRLNEIVS 243
               + +                G         +  Q G+         E DP      +
Sbjct: 188 VQAERRV--------------CCGPITLAGCKARCIQYGQPCYGCRGPVE-DPAYV-ATA 231

Query: 244 HLNHV 248
            L   
Sbjct: 232 RLFSD 236


>UniRef50_B5IEA4 NADH ubiquinone oxidoreductase, 20 Kd subunit family n=2
           Tax=Aciduliprofundum boonei T469 RepID=B5IEA4_9EURY
          Length = 248

 Score = 86.6 bits (213), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 49/217 (22%), Gaps = 48/217 (22%)

Query: 39  YVYRVDCGGCNGCEIEIFATLSPLFD-AERFGIKVVPSPRH-----ADILLFTGAVTRAM 92
            +       C GC ++     + + +  +  GI      +       +I    G  T   
Sbjct: 2   NIGIFSLSCCEGCSVQFLNLENEILEILKYMGINNFRLAKEINEWPVEIAFVEGTPTNRD 61

Query: 93  RSPALRAWQSAPDPKICISYGACGNSGGIFH-----------DLYCVWGG--------TD 133
               ++  +     KI ++ G C  +GG+              +Y               
Sbjct: 62  E--IIKLLKIRKYSKILVALGTCAATGGVPAIVNTLEKKEAMKIYNGVPPKIPIDAKQLK 119

Query: 134 KIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRV 193
             V VD  + GCP +           L     +                           
Sbjct: 120 YYVDVDYILYGCPFSKEELKELITSVLLGKGFRNKRYSVCVECTLRE------------- 166

Query: 194 KVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWL 230
                         G  +    +T+ G      +   
Sbjct: 167 -------NGCLLEEGY-LCMGPVTRAGCKAICPSNNT 195


>UniRef50_C0GED7 NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Dethiobacter
           alkaliphilus AHT 1 RepID=C0GED7_9FIRM
          Length = 254

 Score = 85.4 bits (210), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 59/224 (26%), Gaps = 49/224 (21%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEIFATL------SPLFDAERFGIKVVPS-PRHADILLFTG 86
           +     V       C+GC++E             L D   F +    + P   DI    G
Sbjct: 1   MAELPKVAIFKFASCSGCQLEFLNLEPVLLDLLGLVDLTHFVMARRENKPGPYDIGFVEG 60

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWG---------------- 130
           ++         R  Q+  D  + ++ GAC   GG+                         
Sbjct: 61  SIVNPED--IERLKQARRDCGLLVAIGACACHGGLQSLNNGTPQREVEARVYEHPAEVSS 118

Query: 131 ----GTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGD 186
                 D+ V +D  + GCP      +     AL  +  +I         +         
Sbjct: 119 LKSYPVDEYVDIDAKLSGCPINKNELVEFVKSALLGVTPRIRPHCVCVECKL-------- 170

Query: 187 MVQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWL 230
                       +  +      +      +T+ G G    AR  
Sbjct: 171 ------------SENVCLTVSEKTPCMGPVTRAGCGALCPARST 202


>UniRef50_Q1NJF2 NADH ubiquinone oxidoreductase, 20 kDa subunit n=3 Tax=delta
           proteobacterium MLMS-1 RepID=Q1NJF2_9DELT
          Length = 366

 Score = 83.5 bits (205), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 65/292 (22%), Gaps = 90/292 (30%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDAERF---------------GIKVVPSPRHADI 81
              +       C GCEI +      + + +                  I+ +     A +
Sbjct: 4   KPKLAIYWAAACGGCEIAVVNLHEKILELDAAFELFFCPCLLDTKKGDIEALADGEIA-V 62

Query: 82  LLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF------------------- 122
            LF GA+  +      +        +  I++G+C   G I                    
Sbjct: 63  TLFNGAIRTSENEEMAQL--LRRKSQTLIAFGSCAVEGCIPGLANLYDRTAIFNTVYLDN 120

Query: 123 ------------------------HDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 158
                                    + Y        +V VD +IPGCPP P         
Sbjct: 121 PSLDNPAGILPQTRSQVPEGELRLPEFYDRVQTLADVVAVDFFIPGCPPEPPRIWQAVES 180

Query: 159 ALGLLEQKIH----ARGPGELDEQPAEILHGDMVQPLRVKVDREARRL------------ 202
            L            A       E P +I    + +  R        R+            
Sbjct: 181 LLNGDPPPPDQVLGAGKLAVCHECPRKIEEKKIKRFYRNHQMISDHRVPPAALIAAASPT 240

Query: 203 -------------AGYRYGRQIADDYLTQLGQGEEQVARWLEAENDPRLNEI 241
                             G +  D     L QG   +             ++
Sbjct: 241 ATRTPVREPAPSSQDAVPGDRFPDKESCLLEQGLLCMGIATREGCGALCPQV 292


>UniRef50_C8QXK1 NADH ubiquinone oxidoreductase 20 kDa subunit n=1
           Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK1_9DELT
          Length = 178

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 41/168 (24%)

Query: 34  IKRSAYVYRVDCGGCNGCEIEI------FATLSPLFDAERFGIKVVPS-PRHADILLFTG 86
           +     V  V   GC+GC +           L+P  +     +      P   D+ L  G
Sbjct: 1   MSGRLRVATVWLDGCSGCHMSFLDMDELLLELAPRLELAYSPLVDRKEFPDRVDLALLEG 60

Query: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF-------------------HDLYC 127
           AV+        R        ++ ++ G C   G +                     D   
Sbjct: 61  AVSTPEDEAKARL--VRAHSRLVVALGDCACQGNVPALRNRLDNEQLLDLVYRQQADGPA 118

Query: 128 VWG-------------GTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
                              +++ VD+++PGCPP PAA +      L  
Sbjct: 119 AAPPDRNVPPLLTHSLPLHRVIAVDLFLPGCPPPPAAIVRALTAVLDG 166


>UniRef50_B2N3C8 Hydrogenase-4 component I n=2 Tax=Enterobacteriaceae
           RepID=B2N3C8_ECOLX
          Length = 124

 Score = 78.1 bits (191), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/117 (47%), Positives = 72/117 (61%), Gaps = 2/117 (1%)

Query: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDR 197
           +DV+IPGCPPTPAAT++GFA+ALGLL+QKIHA    +      + L   +    R+ ++R
Sbjct: 6   IDVWIPGCPPTPAATIHGFAVALGLLQQKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIER 65

Query: 198 EARRLAGYRYGRQIADDYLTQLGQGE--EQVARWLEAENDPRLNEIVSHLNHVVEEA 252
           EARRLAGYR GR+I D  L  L       +V  WL   +DPRLN IV  L  V+   
Sbjct: 66  EARRLAGYRQGREICDRLLRHLSDDPTGNRVNTWLRDADDPRLNSIVQQLFRVLRGL 122


>UniRef50_A5UWN9 NADH ubiquinone oxidoreductase, 20 kDa subunit n=2 Tax=Roseiflexus
           RepID=A5UWN9_ROSS1
          Length = 127

 Score = 76.6 bits (187), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPAL 97
             VYR + G C GC++E+ A L+         I    +P  AD+LL TG +T   +   +
Sbjct: 2   IQVYRFNTGSCGGCDLEVIAALAAA-----ADIDWAATPHEADVLLLTGPLTTDTKKAFM 56

Query: 98  RAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIP--GCPPTPAATLYG 155
              Q        I+ G C   G  F       GG   I  + V++   GCPPTP   +  
Sbjct: 57  ALLQELDHRAPIIAVGRCAIDGHPFG-----RGGVAVIPNLTVHLSLDGCPPTPTQIVEA 111

Query: 156 FAMALGLLEQKIHARG 171
                   E       
Sbjct: 112 IRTIAMDREDGAAGER 127


>UniRef50_B7QG38 NADH-plastoquinone oxidoreductase, putative n=1 Tax=Ixodes
           scapularis RepID=B7QG38_IXOSC
          Length = 162

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 97  LRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 144
            + +    +P+  IS G+C N GG +H  Y V  G D+I+PVD+Y+PG
Sbjct: 78  RKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 125


>UniRef50_Q6A6I9 NADH dehydrogenase subunit n=2 Tax=Propionibacterium acnes
           RepID=Q6A6I9_PROAC
          Length = 132

 Score = 70.8 bits (172), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 15/126 (11%)

Query: 39  YVYRVDCGGCNGCEIEIFAT---LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSP 95
            VY VD      C +E  A     +P+ +    G  +        ++L +G VT  +   
Sbjct: 11  SVYVVDLA-LACCGVESGAAVLANAPVREEIPDGAPI--------VVLVSGTVTTGLAPV 61

Query: 96  ALRAWQS--APDPKICISYGACGNSGGIFHDLYCVWGGT-DKIVPVDVYIPGCPPTPAAT 152
                       P   +++GAC  +GG + D   V  G  D  V  D +IPGCPP P   
Sbjct: 62  VSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPPGPETL 121

Query: 153 LYGFAM 158
               A 
Sbjct: 122 TGLLAS 127


>UniRef50_A1RXR6 Hydrogenase (NiFe) small subunit HydA n=3 Tax=Thermoprotei
           RepID=A1RXR6_THEPD
          Length = 423

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/366 (8%), Positives = 69/366 (18%), Gaps = 120/366 (32%)

Query: 8   RDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-LFD-- 64
           +      +  +++     ++ ++ +    S  +   +   C G    +     P L D  
Sbjct: 15  KMGGVAALLASLNWD-ELVRLAVAQAQSGSINIVWFEAQDCAGNTTALIQATEPDLIDVL 73

Query: 65  -------------AERFGIKVVPSPRHA------------D--ILLFTGAVTRAMRSP-- 95
                               +      A            D  +L+  G+  +  ++   
Sbjct: 74  GGSFHLVGPGNVKLAFHETVMPEWGEGALSIARAAAQGKLDPFVLVLEGSFPQDEKAGGP 133

Query: 96  -------------------ALRAWQSAPDPKICISYGACGNSGGI--------------- 121
                                   +  P     ++ G C + GG+               
Sbjct: 134 PGSDSYCYIGDENGKVISCVEWMRRLLPRAVAVVTMGNCASYGGLVANKVLERVPGLPSS 193

Query: 122 -FHDLYC--------VWGGTDKIV----------------------------PVDVYIPG 144
            + D              G   +V                               + +PG
Sbjct: 194 SWSDSPTGAVGFFDDPIRGIKGLVSTLPEAEPFRRFITGQCTLKPGEIRPDCRPAMAVPG 253

Query: 145 CPPTPAATLYGFAMAL---GLLEQKIHARGPGELDEQPAEILHGDMVQPL------RVKV 195
           CP      L   A  +     L                   +H    +            
Sbjct: 254 CPANGNGQLRALAALVLWAKGLLPLPELDKYWRPKFIFGNTVHEQCPRAGSYAAGDFRAY 313

Query: 196 DREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHLNHV 248
             E      Y  G +           G                    P   +        
Sbjct: 314 PGENSYRCLYAVGCKGPISNCPWNKLGWVNGVGGPTRTGGVCIGCTMPGFTDAYEPFYKP 373

Query: 249 VEEARI 254
           ++  R+
Sbjct: 374 LQAPRV 379


>UniRef50_UPI0001698F29 hypothetical protein Epers_23938 n=1 Tax=Endoriftia persephone
           'Hot96_1+Hot96_2' RepID=UPI0001698F29
          Length = 156

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 37  SAYVYRVDCGGCNGCEIEIFATLSPLFDA-ERFGIKVVPSP------RHADILLFTGAVT 89
              +       C+GC++ +      L +      I             H D+ L  G+++
Sbjct: 7   KPTLAVHKFSSCDGCQLALLNLGEALLELPNYLEIVHFAEAGPSDPTAHVDLALVEGSIS 66

Query: 90  RAMRSPALRAWQSAPDPKICISYGACGNSGGIFH 123
                   R  Q   +    IS GAC  +GGI  
Sbjct: 67  TPED--IERIRQVRKNSDYLISIGACATAGGIQA 98


>UniRef50_A4YFB4 Nickel-iron dehydrogenase small subunit, N-terminal domain protein
           n=1 Tax=Metallosphaera sedula DSM 5348
           RepID=A4YFB4_METS5
          Length = 432

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/335 (9%), Positives = 59/335 (17%), Gaps = 131/335 (39%)

Query: 10  ANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSP-------- 61
              +   + +         S  ++  +   +     G C G  I     ++P        
Sbjct: 14  VTALGTSLALSGLSYEELLSKAQEADQPINIVWTGNGWCGGNTIAFIDAMNPSVEDVVTG 73

Query: 62  -------------------LFDAERFGIKV------VPSPRHA-----D--ILLFTGAV- 88
                              + +     I +        +   A     D  +L+  G + 
Sbjct: 74  VYFNGKPITLRQPSIPDLGMINLVYHPILMPQDNMAYATMEMALNGELDPFVLVVEGTMF 133

Query: 89  ------------------TRAMRSPA----LRAWQSAPDPKICISYGACGNSGGIFH--- 123
                              R             +         ++ GAC   GGI     
Sbjct: 134 DEFGVYYKKPSGSFWCSAGRKPDGSVLLCDEFVFNLMKKAAAVVATGACATYGGIPATTN 193

Query: 124 ------DLYC------VWGGT----------------DKIVPVDVY-------------- 141
                   Y        + G                   I+  D+Y              
Sbjct: 194 GLGQRSPTYAMGMLDDPYRGIYGFPYYVHQVYTQDLAPDIIDQDIYSVTNSPVNTSWPGP 253

Query: 142 --------------IPGCPPTPAATLYGFAM---ALGLLEQKI--HARGPGELDEQPAEI 182
                         I   PP     +         L  L                     
Sbjct: 254 SYHWLSTAGLPIISIAADPPAGDWIMRTLVSAVLYLRGLGPNPADDLDVFNRPKFFYGNE 313

Query: 183 LHGDMVQPLRVKVDREARRL----AGYRYGRQIAD 213
            H +  +         A         Y  G +  +
Sbjct: 314 THQNCPRAGFFAQGIFAYEFGDPQCTYSLGCKGTE 348


>UniRef50_A9B2V8 NADH ubiquinone oxidoreductase, 20 kDa subunit n=1
           Tax=Herpetosiphon aurantiacus ATCC 23779
           RepID=A9B2V8_HERA2
          Length = 124

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 13/132 (9%)

Query: 38  AYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPAL 97
             VY ++ G      IE+      +       +    +P HADI + TG +   +R    
Sbjct: 2   IAVYHLNAGSTG---IEVRILAEAI--RSARNLTWAATPAHADIFVLTGPIPLLLRPALS 56

Query: 98  RAW-QSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKI--VPVDVYIPGCPPTPAATLY 154
             W     D    I+ G     G  F       GG  ++  + V   I G PPT AA   
Sbjct: 57  NVWRDFIADRAPLIALGRASIDGHPFG-----RGGLAELPEIQVAAKIDGDPPTVAAIQA 111

Query: 155 GFAMALGLLEQK 166
           G   AL     K
Sbjct: 112 GIVQALNARTAK 123


>UniRef50_C7J5D7 Os07g0116900 protein n=3 Tax=Oryza sativa RepID=C7J5D7_ORYSJ
          Length = 114

 Score = 60.0 bits (144), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 51  CEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRA 99
           C +E+    +  +D +RF +   PSPR +D ++  G +T  M     + 
Sbjct: 61  CAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPALGKT 109


>UniRef50_A2BMI5 NiFe hydrogenase n=1 Tax=Hyperthermus butylicus DSM 5456
           RepID=A2BMI5_HYPBU
          Length = 506

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 24/146 (16%), Gaps = 20/146 (13%)

Query: 117 NSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL---GLLEQKIHARGPG 173
             G    D        D      V +PGCP    A L      +                
Sbjct: 319 IDGKCVPDKPSP----DASCKPAVAVPGCPSNGNAQLKTLTNLILWVKGELPLPELDQYW 374

Query: 174 ELDEQPAEILHGDMVQPLRVKVDR------EARRLAGYRYGRQIADDYLTQLGQGEEQVA 227
                    +H    +  + +         E      +  G +           G     
Sbjct: 375 RPKIIFGGSVHEQCPRNEKYRAGILRSEPGEPSGACLFSVGCKGPISNCPYNKIGWVNGV 434

Query: 228 RWLEAEND-------PRLNEIVSHLN 246
                          P   +      
Sbjct: 435 GGPTRTGGVCIGCTMPGFMDAYEPYY 460


>UniRef50_A3MWH6 Nickel-iron dehydrogenase small subunit, N-terminal domain protein
           n=4 Tax=Thermoproteaceae RepID=A3MWH6_PYRCJ
          Length = 442

 Score = 57.3 bits (137), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/221 (9%), Positives = 35/221 (15%), Gaps = 73/221 (33%)

Query: 98  RAWQSAPDPKICISYGACGNSGGIFHD--------------LYCVWGGTD---------- 133
                  +    ++ G C   GG+  +                   G             
Sbjct: 175 WLKSLLNNALAVVAVGNCAAYGGLVANKVLEPPPGFTYPTWSPSPTGAIGFFDDPIRGIK 234

Query: 134 ---------------------------KIVPVDVYIPGCPPTPAATLYGFAMAL------ 160
                                      K +   V +PGCP      L   A+        
Sbjct: 235 GAIHQPYFQPEIEPFRKYIDEGGVPDFKTIKPAVAVPGCPANGNGILRTLALLTLVAAGY 294

Query: 161 ---GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDRE------ARRLAGYRYGRQI 211
               +LE+K                +H    +                     +  G + 
Sbjct: 295 LKPDVLERKAFLDKYARPRFIFELTVHEQCPRAAWYAAGNFRPTPGAGDGKCLFEVGCKG 354

Query: 212 ADDYLTQLGQGEEQVARWLEAEND-------PRLNEIVSHL 245
                     G                    P   +     
Sbjct: 355 PISNCPWNKVGWVSGVGGPTRTGGVCIGCTMPGFTDAYEPF 395


>UniRef50_Q85WY3 ORF82a n=1 Tax=Pinus koraiensis RepID=Q85WY3_PINKO
          Length = 82

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 115 CGNSGGIFH-------DLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGL 162
           C   G +++       D Y      DK++PVDVY P CP  P   +         
Sbjct: 21  CSCPGSMYYHIEMFGTDSYSTVHEVDKLIPVDVYSPDCPTEPEVIIDAITKLRER 75


>UniRef50_A7IHL6 Ni Fe-hydrogenase III large subunit-like protein n=4
           Tax=Proteobacteria RepID=A7IHL6_XANP2
          Length = 110

 Score = 51.2 bits (121), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%)

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
            L+   D  R G+     PR A++LL    +   M   A  A+   P P+  +  G    
Sbjct: 41  ALAAGLDLSRAGLTEADGPRQANVLLVMLPLPAPMLKAATVAYAQMPRPRTVLVLGEGVI 100

Query: 118 SGGIFHDL 125
           +     D 
Sbjct: 101 APLPEPDS 108


>UniRef50_Q0FXV5 Putative uncharacterized protein n=1 Tax=Fulvimarina pelagi
           HTCC2506 RepID=Q0FXV5_9RHIZ
          Length = 391

 Score = 43.5 bits (101), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 55  IFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISY 112
           +   L  LF+  RF      SPRHA I L  G +    R    R     P P++ + +
Sbjct: 11  MRDRLERLFNDARF--VRAASPRHAAIFLIAGRMRLEDREDLRRLHDQMPHPRVTLLW 66


>UniRef50_A2QZP1 Contig An12c0160, complete genome n=1 Tax=Aspergillus niger CBS
            513.88 RepID=A2QZP1_ASPNC
          Length = 1952

 Score = 42.7 bits (99), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 53/184 (28%), Gaps = 22/184 (11%)

Query: 59   LSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNS 118
            L+ +F+   FG     +P    +LL  GA    M    L+       P   I+ G C + 
Sbjct: 1301 LNAMFETALFGATKYANPELCQLLLAEGADPEQMN--LLQCT-----PLFNIANGICTSR 1353

Query: 119  GGIFHDLYCVWGGTDKIVPVDVYI------PGCP----PTPAATLYGFAMALGLLEQKIH 168
            G     LY      D  V   + +      P CP    P            +    Q I 
Sbjct: 1354 GSAPQQLYPGSHDFDASVKAAILLIENGANP-CPQVFDPEVEEVHEVLQAYIANFSQPIR 1412

Query: 169  ARGPGELDEQPAEILHGDMVQPLRVKVDREARRLA-GYRYGRQIADDYLTQLGQGEEQVA 227
                       A  + GD ++ L    D +          GR    +   +       V+
Sbjct: 1413 PADKSPEFTLFAREIWGDFLKSL---TDEDVYTFLELLCMGRSGNIEPCEKGPLYWVSVS 1469

Query: 228  RWLE 231
               E
Sbjct: 1470 GSCE 1473


>UniRef50_C5U4Z7 Coenzyme F420-reducing hydrogenase alpha subunit-like protein n=1
           Tax=Methanocaldococcus infernus ME RepID=C5U4Z7_9EURY
          Length = 393

 Score = 42.3 bits (98), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 90  RAMRSP--ALRAWQSAPDP--KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGC 145
           R M+      RA   +     K  I+ G+C   G +      +     K V  + Y+  C
Sbjct: 302 RKMKEIKLIGRALHISEKVDGKNIIAVGSCACDGRVVGYKDALTE-CYKKVNANYYLRAC 360

Query: 146 PPTPAATLYGFAMALGLLEQKIHARGPGELDE 177
           PP            +   +  I +        
Sbjct: 361 PPCLEELEKVVEAVIKKDKFIIDSYLVLRNYM 392


>UniRef50_D1TP47 Ni Fe-hydrogenase I small subunit-like protein n=1 Tax=Burkholderia
           sp. CCGE1002 RepID=D1TP47_9BURK
          Length = 303

 Score = 41.2 bits (95), Expect = 0.037,   Method: Composition-based stats.
 Identities = 4/48 (8%), Positives = 9/48 (18%)

Query: 188 VQPLRVKVDREARRLAGYRYGRQIADDYLTQLGQGEEQVARWLEAEND 235
                   +   R    Y+ G +    Y         +   +      
Sbjct: 184 PVRRAWDDEAARRGYCLYKVGCKGPTTYNACSTVRWNRGTSFPIQAGH 231


>UniRef50_C5Q420 Putative uncharacterized protein (Fragment) n=5 Tax=Bacteria
           RepID=C5Q420_STAAU
          Length = 37

 Score = 40.4 bits (93), Expect = 0.052,   Method: Composition-based stats.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 219 LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 255
           LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR
Sbjct: 1   LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR 37


>UniRef50_Q1AZS0 Ni Fe-hydrogenase III large subunit-like protein n=1
           Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZS0_RUBXD
          Length = 540

 Score = 39.6 bits (91), Expect = 0.094,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%)

Query: 58  TLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGN 117
             +   D E  G+ +   PRHA +LL  G +  A+R  A   +     P+  ++ GA   
Sbjct: 36  ARARGLDVEAAGLGMTGVPRHASVLLVVGELPAALRRAAAVVYAQMMRPRAVLAAGAGDL 95

Query: 118 SGGIFHD 124
           S     D
Sbjct: 96  SPLPGAD 102


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.312    0.139    0.372 

Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,099,548,248
Number of Sequences: 3077464
Number of extensions: 43784901
Number of successful extensions: 141983
Number of sequences better than 1.0e-01: 294
Number of HSP's better than  0.1 without gapping: 697
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 139592
Number of HSP's gapped (non-prelim): 1048
length of query: 255
length of database: 1,040,396,356
effective HSP length: 126
effective length of query: 129
effective length of database: 652,635,892
effective search space: 84190030068
effective search space used: 84190030068
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 92 (40.0 bits)
