Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	Y	F	I	L	M	F	T	F	V	C	S	F	V	A	A	Q	P	T	I	V	P	Q	L	Q	Q	Q	V	T	D	L	T	S	S	L	N	S	Q	E	K	K	E	L	T	H	K	L	E	S	I	F	N	N	T	Q	V	Q	I	A
Secondary structure
SS confidence
Disorder		?														?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	L	I	V	P	T	T	K	D	E	T	I	E	Q	Y	A	T	R	V	F	D	N	W	R	L	G	D	A	K	R	N	D	G	I	L	I	V	V	A	W	S	D	R	T	V	R	I	Q	V	G	Y	G	L	E	E	K	V	T	D	A
Secondary structure
SS confidence
Disorder																										?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	A	G	D	I	I	R	S	N	M	I	P	A	F	K	Q	Q	K	L	A	K	G	L	E	L	A	I	N	A	L	N	N	Q	L	T	S	Q	H	Q	Y	P	T	N	P	S	E	S	E	S	A	S	S	S	D	H	Y	Y	F	A	I
Secondary structure
SS confidence
Disorder																			?																		?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	W	V	F	A	V	M	F	F	P	F	W	F	F	H	Q	G	S	N	F	C	R	A	C	K	S	G	V	C	I	S	A	I	Y	L	L	D	L	F	L	F	S	D	K	I	F	S	I	A	V	F	S	F	F	F	T	F	T	I	F
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Sequence		M	V	F	T	C	L	C	V	L	Q	K	R	A	S	G	R	S	Y	H	S	D	N	S	G	S	A	G	G	S	D	S	G	G	F	S	G	G	G	G	S	S	G	G	G	G	A	S	G	R	W
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ptj chain A Region: 13 - 164 Aligned: 151 Modelled: 152 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:upf0603 protein at1g54780, chloroplastic; PDBTitle: structural and functional analysis of arabidopsis thaliana thylakoid2 lumen protein attlp18.3 Phyre2 PDB 2kw7 chain A Region: 23 - 160 Aligned: 138 Modelled: 138 Confidence: 100.0% Identity: 29% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved domain protein; PDBTitle: solution nmr structure of the n-terminal domain of protein pg_03612 from p.gingivalis, northeast structural genomics consortium target3 pgr37a Phyre2 PDB 2kpt chain A Region: 18 - 163 Aligned: 135 Modelled: 146 Confidence: 100.0% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative secreted protein; PDBTitle: solution nmr structure of the n-terminal domain of cg24962 protein from corynebacterium glutamicum. northeast3 structural genomics consortium target cgr26a Phyre2 PDB 3g98 chain B Region: 56 - 134 Aligned: 70 Modelled: 79 Confidence: 76.3% Identity: 11% PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of the c-ala domain from aquifex aeolicus2 alanyl-trna synthetase Phyre2 PDB 3b48 chain A domain 1 Region: 43 - 100 Aligned: 56 Modelled: 57 Confidence: 42.3% Identity: 14% Fold: PTS system fructose IIA component-like Superfamily: PTS system fructose IIA component-like Family: DhaM-like Phyre2 PDB 2vkc chain A Region: 26 - 98 Aligned: 73 Modelled: 73 Confidence: 33.2% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain Phyre2 PDB 1j3w chain A Region: 35 - 66 Aligned: 32 Modelled: 32 Confidence: 31.4% Identity: 22% Fold: Profilin-like Superfamily: Roadblock/LC7 domain Family: Roadblock/LC7 domain Phyre2 PDB 3bj5 chain A Region: 37 - 138 Aligned: 96 Modelled: 102 Confidence: 30.8% Identity: 7% PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase; PDBTitle: alternative conformations of the x region of human protein disulphide-2 isomerase modulate exposure of the substrate binding b' domain Phyre2 PDB 1j3w chain B Region: 32 - 66 Aligned: 35 Modelled: 35 Confidence: 25.7% Identity: 20% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:giding protein-mglb; PDBTitle: structure of gliding protein-mglb from thermus thermophilus hb8 Phyre2 PDB 1yg6 chain A domain 1 Region: 26 - 77 Aligned: 52 Modelled: 52 Confidence: 25.2% Identity: 8% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Clp protease, ClpP subunit Phyre2 PDB 1qzw chain C Region: 29 - 96 Aligned: 62 Modelled: 68 Confidence: 25.2% Identity: 11% PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Phyre2 PDB 3pdi chain G Region: 31 - 174 Aligned: 104 Modelled: 105 Confidence: 22.4% Identity: 15% PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen Phyre2 PDB 2cby chain A domain 1 Region: 26 - 82 Aligned: 55 Modelled: 57 Confidence: 21.2% Identity: 11% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Clp protease, ClpP subunit Phyre2 PDB 1cvr chain A domain 2 Region: 46 - 84 Aligned: 39 Modelled: 39 Confidence: 18.1% Identity: 13% Fold: Caspase-like Superfamily: Caspase-like Family: Gingipain R (RgpB), N-terminal domain Phyre2 PDB 1y7o chain A domain 1 Region: 27 - 76 Aligned: 50 Modelled: 50 Confidence: 17.4% Identity: 14% Fold: ClpP/crotonase Superfamily: ClpP/crotonase Family: Clp protease, ClpP subunit Phyre2 PDB 2deo chain A Region: 28 - 70 Aligned: 42 Modelled: 43 Confidence: 17.1% Identity: 7% PDB header:hydrolase Chain: A: PDB Molecule:441aa long hypothetical nfed protein; PDBTitle: 1510-n membrane protease specific for a stomatin homolog from2 pyrococcus horikoshii Phyre2 PDB 3ds8 chain A Region: 38 - 78 Aligned: 41 Modelled: 41 Confidence: 17.1% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua Phyre2 PDB 1y9u chain A Region: 31 - 66 Aligned: 36 Modelled: 36 Confidence: 16.9% Identity: 17% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 2l8b chain A Region: 29 - 62 Aligned: 30 Modelled: 34 Confidence: 16.7% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:protein trai; PDBTitle: trai (381-569) Phyre2 PDB 3kth chain D Region: 27 - 77 Aligned: 51 Modelled: 51 Confidence: 15.5% Identity: 10% PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: structure of clpp from bacillus subtilis in orthorombic crystal form Phyre2 1 c3ptjA_ 2 c2kw7A_ 3 c2kptA_ 4 c3g98B_ 5 d3b48a1 6 c2vkcA_ 7 d1j3wa_ 8 c3bj5A_ 9 c1j3wB_ 10 d1yg6a1 11 c1qzwC_ 12 c3pdiG_ 13 d2cbya1 14 d1cvra2 15 d1y7oa1 16 c2deoA_ 17 c3ds8A_ 18 d1y9ua_ 19 c2l8bA_ 20 c3kthD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ptjA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:upf0603 protein at1g54780, chloroplastic; PDBTitle: structural and functional analysis of arabidopsis thaliana thylakoid2 lumen protein attlp18.3 2 c2kw7A_ 100.0 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved domain protein; PDBTitle: solution nmr structure of the n-terminal domain of protein pg_03612 from p.gingivalis, northeast structural genomics consortium target3 pgr37a 3 c2kptA_ 100.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative secreted protein; PDBTitle: solution nmr structure of the n-terminal domain of cg24962 protein from corynebacterium glutamicum. northeast3 structural genomics consortium target cgr26a 4 c3g98B_ 76.3 11 PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of the c-ala domain from aquifex aeolicus2 alanyl-trna synthetase 5 d3b48a1 42.3 14 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:DhaM-like 6 c2vkcA_ 33.2 18 PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain 7 d1j3wa_ 31.4 22 Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain 8 c3bj5A_ 30.8 7 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase; PDBTitle: alternative conformations of the x region of human protein disulphide-2 isomerase modulate exposure of the substrate binding b' domain 9 c1j3wB_ 25.7 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:giding protein-mglb; PDBTitle: structure of gliding protein-mglb from thermus thermophilus hb8 10 d1yg6a1 25.2 8 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 11 c1qzwC_ 25.2 11 PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication 12 c3pdiG_ 22.4 15 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 13 d2cbya1 21.2 11 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 14 d1cvra2 18.1 13 Fold:Caspase-like Superfamily:Caspase-like Family:Gingipain R (RgpB), N-terminal domain 15 d1y7oa1 17.4 14 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 16 c2deoA_ 17.1 7 PDB header:hydrolase Chain: A: PDB Molecule:441aa long hypothetical nfed protein; PDBTitle: 1510-n membrane protease specific for a stomatin homolog from2 pyrococcus horikoshii 17 c3ds8A_ 17.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua 18 d1y9ua_ 16.9 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 19 c2l8bA_ 16.7 23 PDB header:hydrolase Chain: A: PDB Molecule:protein trai; PDBTitle: trai (381-569) 20 c3kthD_ 15.5 10 PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: structure of clpp from bacillus subtilis in orthorombic crystal form 21 d2d9ia1 not modelled 15.4 19 Fold:IF3-like Superfamily:SMR domain-like Family:Smr domain 22 d1a1va1 not modelled 15.2 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RNA helicase 23 c3iprC_ not modelled 15.2 9 PDB header:transferase Chain: C: PDB Molecule:pts system, iia component; PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component 24 c1tg6G_ not modelled 14.6 4 PDB header:hydrolase Chain: G: PDB Molecule:putative atp-dependent clp protease proteolytic subunit; PDBTitle: crystallography and mutagenesis point to an essential role for the n-2 terminus of human mitochondrial clpp 25 c2j37W_ not modelled 14.4 13 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 26 c1cvrA_ not modelled 14.2 13 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:gingipain r; PDBTitle: crystal structure of the arg specific cysteine proteinase gingipain r2 (rgpb) 27 c2zvfG_ not modelled 13.9 16 PDB header:ligase Chain: G: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase c-terminal dimerization domain 28 c2cbyG_ not modelled 13.6 12 PDB header:hydrolase Chain: G: PDB Molecule:atp-dependent clp protease proteolytic subunit 1; PDBTitle: crystal structure of the atp-dependent clp protease2 proteolytic subunit 1 (clpp1) from mycobacterium3 tuberculosis 29 c1g6uB_ not modelled 13.4 16 PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer 30 d1xvya_ not modelled 13.2 9 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 31 d1omza_ not modelled 13.1 7 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Exostosin 32 d1pdoa_ not modelled 12.9 17 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:EIIA-man component-like 33 d1xc1a_ not modelled 12.3 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 34 d1nnfa_ not modelled 12.2 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 35 c2l69A_ not modelled 12.1 24 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 36 c3lfjB_ not modelled 11.1 15 PDB header:transferase Chain: B: PDB Molecule:phosphotransferase system, mannose/fructose/n- PDBTitle: crystal structure of manxb from thermoanaerobacter tengcongensis 37 d1y4ta_ not modelled 11.0 3 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 38 d1tg6a1 not modelled 10.3 4 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 39 c3gdwA_ not modelled 10.0 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma-54 interaction domain protein; PDBTitle: crystal structure of sigma-54 interaction domain protein from2 enterococcus faecalis 40 c2j289_ not modelled 9.9 10 PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs 41 c3bqhA_ not modelled 9.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb; PDBTitle: structure of the central domain (msra) of neisseria meningitidis pilb2 (oxidized form) 42 d1xvxa_ not modelled 9.8 9 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 43 d3ct6a1 not modelled 9.1 14 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:DhaM-like 44 c2vqzB_ not modelled 8.9 25 PDB header:transcription Chain: B: PDB Molecule:polymerase basic protein 2; PDBTitle: structure of the cap-binding domain of influenza virus2 polymerase subunit pb2 with bound m7gtp 45 d1u8sa1 not modelled 8.7 4 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 46 c3p2lD_ not modelled 8.7 6 PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: crystal structure of atp-dependent clp protease subunit p from2 francisella tularensis 47 c2a02A_ not modelled 8.6 7 PDB header:membrane protein, metal transport Chain: A: PDB Molecule:ferric-pseudobactin 358 receptor; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter pupa from3 pseudomonas putida. 48 d1ta8a_ not modelled 8.5 19 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 49 c2ayaA_ not modelled 8.3 12 PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii subunit tau; PDBTitle: solution structure of the c-terminal 14 kda domain of the2 tau subunit from escherichia coli dna polymerase iii 50 c2iy3A_ not modelled 8.2 13 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 51 d2vvpa1 not modelled 8.1 13 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 52 c3pbjE_ not modelled 8.1 21 PDB header:de novo protein Chain: E: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 53 c3pbjC_ not modelled 8.0 24 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 54 c3pbjD_ not modelled 8.0 24 PDB header:de novo protein Chain: D: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 55 c3pbjA_ not modelled 8.0 24 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 56 c3pbjF_ not modelled 8.0 24 PDB header:de novo protein Chain: F: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 57 c3pbjB_ not modelled 8.0 24 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9l-pen l23h; PDBTitle: hydrolytic catalysis and structural stabilization in a designed2 metalloprotein 58 d2o8ia1 not modelled 8.0 15 Fold:UraD-like Superfamily:UraD-Like Family:UraD-like 59 c3dm5A_ not modelled 7.8 17 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 60 c3pilA_ not modelled 7.5 24 PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form 61 c1ii8B_ not modelled 7.4 9 PDB header:replication Chain: B: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of the p. furiosus rad50 atpase domain 62 c2q37A_ not modelled 7.3 10 PDB header:plant protein, lyase Chain: A: PDB Molecule:ohcu decarboxylase; PDBTitle: crystal structure of ohcu decarboxylase in the presence of2 (s)-allantoin 63 d2q37a1 not modelled 7.3 10 Fold:UraD-like Superfamily:UraD-Like Family:UraD-like 64 c3pn1A_ not modelled 7.3 19 PDB header:ligase/ligase inhibitor Chain: A: PDB Molecule:dna ligase; PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo 65 c3gx1A_ not modelled 7.1 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1832 protein; PDBTitle: crystal structure of a domain of lin1832 from listeria innocua 66 d1j3sa_ not modelled 6.9 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 67 c2d3o1_ not modelled 6.8 16 PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans 68 c3c9hB_ not modelled 6.7 13 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens 69 d1ofda1 not modelled 6.6 13 Fold:Single-stranded right-handed beta-helix Superfamily:Alpha subunit of glutamate synthase, C-terminal domain Family:Alpha subunit of glutamate synthase, C-terminal domain 70 d1nn4a_ not modelled 6.4 19 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 71 d1xpja_ not modelled 6.2 19 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 72 d1efpb_ not modelled 6.1 10 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 73 d1sd4a_ not modelled 6.1 37 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 74 c2z0sA_ not modelled 5.9 5 PDB header:rna binding protein Chain: A: PDB Molecule:probable exosome complex rna-binding protein 1; PDBTitle: crystal structure of putative exosome complex rna-binding2 protein 75 d1wejf_ not modelled 5.8 17 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 76 c2h8lA_ not modelled 5.6 7 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a3; PDBTitle: crystal structure of the bb' fragment of erp57

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0