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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: d1cvra2

Fold library idFoldSuperfamilyFamily
d1cvra2Caspase-likeCaspase-likeGingipain R (RgpB), N-terminal domain


Added to library: Tue Mar 16 13:37:07 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YTPVEEKENGRMIVIVAKKYEGDIKDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDL
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Known secondary structure (DSSP)






TT

GGGGGG
TT

SS

STT

 .........80.........90.........100.........110.........120.........130.........140
Sequence TYVLLVGDHKDIPAKITPGIKSDQVYGQIVGNDHYNEVFIGRFSCESKEDLKTQIDRTIHYERNITTEDK
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Known secondary structure (DSSP) S
TTTS

TTSGGGG

SSSSS

SS

SSS

TT
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence WLGQALCIASAEGGPSADNGESDIQHENVIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLVNYTG
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Known secondary structure (DSSP) TTT
S
B
TTSGGG
BT
SSSS



SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence HGSETAWGTSHFGTTHVKQLTNSNQLPFIFDVACVNGDFLFSMPCFAEALMRAQKDGKPTGTVAIIASTI
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Known secondary structure (DSSP)
B
SSBBTTT

BTTTGGG


TT


SSSTT
TTSSS


TT
S
SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence DQYWAPPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFAMVEKYKKDGENMLDTWTVFGDPSLLVRTLV
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Known secondary structure (DSSP)


SSTT
STT



BS
TT
B





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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