Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	K	V	L	F	F	A	Q	V	R	E	L	V	G	T	D	A	T	E	V	A	A	D	F	P	T	V	E	A	L	R	Q	H	M	A	A	Q	S	D	R	W	A	L	A	L	E	D	G	K	L	L	A	A	V	N	Q	T	L	V
Secondary structure
SS confidence
Disorder		?	?																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Sequence		S	F	D	H	P	L	T	D	G	D	E	V	A	F	F	P	P	V	T	G	G
Secondary structure
SS confidence
Disorder			?																?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1fm0 chain D Region: 1 - 81 Aligned: 81 Modelled: 81 Confidence: 100.0% Identity: 100% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: MoaD Phyre2 PDB 3po0 chain A Region: 2 - 81 Aligned: 80 Modelled: 80 Confidence: 99.9% Identity: 25% PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii Phyre2 PDB 2qie chain B Region: 2 - 81 Aligned: 76 Modelled: 80 Confidence: 99.9% Identity: 26% PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z Phyre2 PDB 2g1e chain A Region: 1 - 81 Aligned: 80 Modelled: 81 Confidence: 99.9% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 Phyre2 PDB 2l52 chain A Region: 2 - 81 Aligned: 78 Modelled: 80 Confidence: 99.9% Identity: 27% PDB header:protein binding Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog; PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans Phyre2 PDB 1vjk chain A Region: 2 - 78 Aligned: 77 Modelled: 77 Confidence: 99.9% Identity: 36% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: MoaD Phyre2 PDB 1v8c chain A Region: 3 - 81 Aligned: 77 Modelled: 79 Confidence: 99.9% Identity: 27% PDB header:protein binding Chain: A: PDB Molecule:moad related protein; PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8 Phyre2 PDB 1v8c chain A domain 1 Region: 3 - 81 Aligned: 77 Modelled: 79 Confidence: 99.9% Identity: 25% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: MoaD Phyre2 PDB 3rpf chain C Region: 2 - 81 Aligned: 71 Modelled: 80 Confidence: 99.8% Identity: 30% PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 Phyre2 PDB 3dwm chain A Region: 2 - 78 Aligned: 76 Modelled: 77 Confidence: 99.8% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen Phyre2 PDB 2qjl chain A Region: 2 - 81 Aligned: 80 Modelled: 80 Confidence: 99.8% Identity: 25% PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 Phyre2 PDB 1xo3 chain A Region: 2 - 81 Aligned: 80 Modelled: 80 Confidence: 99.8% Identity: 23% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: C9orf74 homolog Phyre2 PDB 1wgk chain A Region: 2 - 81 Aligned: 80 Modelled: 80 Confidence: 99.7% Identity: 23% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: C9orf74 homolog Phyre2 PDB 2k9x chain A Region: 2 - 81 Aligned: 80 Modelled: 80 Confidence: 99.7% Identity: 26% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei Phyre2 PDB 1zud chain 2 domain 1 Region: 19 - 81 Aligned: 54 Modelled: 60 Confidence: 98.3% Identity: 28% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: ThiS Phyre2 PDB 2kl0 chain A Region: 19 - 81 Aligned: 54 Modelled: 63 Confidence: 98.2% Identity: 30% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 Phyre2 PDB 1rws chain A Region: 1 - 81 Aligned: 66 Modelled: 72 Confidence: 98.2% Identity: 30% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: ThiS Phyre2 PDB 3cwi chain A Region: 15 - 81 Aligned: 59 Modelled: 67 Confidence: 97.7% Identity: 22% PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 Phyre2 PDB 2cu3 chain A domain 1 Region: 19 - 80 Aligned: 53 Modelled: 62 Confidence: 97.3% Identity: 19% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: ThiS Phyre2 PDB 1tyg chain B Region: 14 - 80 Aligned: 58 Modelled: 67 Confidence: 96.9% Identity: 19% Fold: beta-Grasp (ubiquitin-like) Superfamily: MoaD/ThiS Family: ThiS Phyre2 1 d1fm0d_ 2 c3po0A_ 3 c2qieB_ 4 c2g1eA_ 5 c2l52A_ 6 d1vjka_ 7 c1v8cA_ 8 d1v8ca1 9 c3rpfC_ 10 c3dwmA_ 11 c2qjlA_ 12 d1xo3a_ 13 d1wgka_ 14 c2k9xA_ 15 d1zud21 16 c2kl0A_ 17 d1rwsa_ 18 c3cwiA_ 19 d2cu3a1 20 d1tygb_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1fm0d_ 100.0 100 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 2 c3po0A_ 99.9 25 PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii 3 c2qieB_ 99.9 26 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 4 c2g1eA_ 99.9 23 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 5 c2l52A_ 99.9 27 PDB header:protein binding Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog; PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans 6 d1vjka_ 99.9 36 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 7 c1v8cA_ 99.9 27 PDB header:protein binding Chain: A: PDB Molecule:moad related protein; PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8 8 d1v8ca1 99.9 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 9 c3rpfC_ 99.8 30 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 10 c3dwmA_ 99.8 25 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 11 c2qjlA_ 99.8 25 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 12 d1xo3a_ 99.8 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 13 d1wgka_ 99.7 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 14 c2k9xA_ 99.7 26 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 15 d1zud21 98.3 28 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 16 c2kl0A_ 98.2 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 17 d1rwsa_ 98.2 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 18 c3cwiA_ 97.7 22 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 19 d2cu3a1 97.3 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 20 d1tygb_ 96.9 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 21 d1tkea1 not modelled 95.9 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 22 c3hvzB_ not modelled 95.3 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 23 d1ryja_ not modelled 95.0 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 24 d1wxqa2 not modelled 94.9 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 25 c2kmmA_ not modelled 94.9 21 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 26 c1tygG_ not modelled 94.9 20 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 27 d2hj1a1 not modelled 93.4 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like 28 c2hj1A_ not modelled 93.4 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae 29 d1ud7a_ not modelled 91.9 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 30 d1c3ta_ not modelled 91.6 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 31 c1wwtA_ not modelled 89.6 17 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 32 c1yx5B_ not modelled 89.6 6 PDB header:hydrolase Chain: B: PDB Molecule:ubiquitin; PDBTitle: solution structure of s5a uim-1/ubiquitin complex 33 c2ekiA_ not modelled 89.0 19 PDB header:signaling protein Chain: A: PDB Molecule:developmentally-regulated gtp-binding protein 1; PDBTitle: solution structures of the tgs domain of human2 developmentally-regulated gtp-binding protein 1 34 d1wh3a_ not modelled 86.9 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 35 d1v5oa_ not modelled 83.9 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 36 c1tkeA_ not modelled 82.2 14 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase complexed with serine 37 d1nyra2 not modelled 80.6 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 38 c2k8hA_ not modelled 78.0 13 PDB header:signaling protein Chain: A: PDB Molecule:small ubiquitin protein; PDBTitle: solution structure of sumo from trypanosoma brucei 39 d2g1la1 not modelled 77.4 27 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 40 d1euvb_ not modelled 77.2 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 41 c3fm8A_ not modelled 75.4 32 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 42 c2k6pA_ not modelled 74.2 12 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 43 c2eh0A_ not modelled 74.1 27 PDB header:transport protein Chain: A: PDB Molecule:kinesin-like protein kif1b; PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b 44 c2jxxA_ not modelled 70.1 21 PDB header:protein binding Chain: A: PDB Molecule:nfatc2-interacting protein; PDBTitle: nmr solution structure of ubiquitin-like domain of2 nfatc2ip. northeast structural genomics consortium target3 hr5627 45 c2l7rA_ not modelled 69.7 10 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin-like protein fubi; PDBTitle: solution nmr structure of n-terminal ubiquitin-like domain of fubi, a2 ribosomal protein s30 precursor from homo sapiens. northeast3 structural genomics consortium (nesg) target hr6166 46 c1dm9A_ not modelled 69.6 5 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 47 d1dm9a_ not modelled 69.6 5 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 48 c3tixA_ not modelled 69.2 18 PDB header:gene regulation/protein binding Chain: A: PDB Molecule:ubiquitin-like protein smt3, rna-induced transcriptional PDBTitle: crystal structure of the chp1-tas3 complex core 49 d2io3b1 not modelled 67.0 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 50 d1wgga_ not modelled 66.0 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 51 c3goeA_ not modelled 63.7 16 PDB header:recombination, replication Chain: A: PDB Molecule:dna repair protein rad60; PDBTitle: molecular mimicry of sumo promotes dna repair 52 d1we7a_ not modelled 63.1 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 53 d1v86a_ not modelled 62.3 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 54 d1wlna1 not modelled 60.6 23 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 55 d1v5ta_ not modelled 59.5 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 56 c1wxqA_ not modelled 57.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of gtp binding protein from pyrococcus horikoshii2 ot3 57 c3m62B_ not modelled 56.9 16 PDB header:ligase/protein binding Chain: B: PDB Molecule:uv excision repair protein rad23; PDBTitle: crystal structure of ufd2 in complex with the ubiquitin-like (ubl)2 domain of rad23 58 d1yqba1 not modelled 55.5 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 59 d1vioa2 not modelled 52.1 26 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 60 d2ff4a3 not modelled 51.3 23 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 61 d1wm3a_ not modelled 49.4 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 62 d1wjua_ not modelled 49.4 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 63 d1gxca_ not modelled 48.3 31 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 64 c1gxcA_ not modelled 48.3 31 PDB header:phosphoprotein-binding domain Chain: A: PDB Molecule:serine/threonine-protein kinase chk2; PDBTitle: fha domain from human chk2 kinase in complex with a2 synthetic phosphopeptide 65 c2kdiA_ not modelled 48.1 5 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin, vacuolar protein sorting-associated PDBTitle: solution structure of a ubiquitin/uim fusion protein 66 d2affa1 not modelled 47.4 23 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 67 d1wz0a1 not modelled 46.5 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 68 c2kd0A_ not modelled 46.3 9 PDB header:signaling protein Chain: A: PDB Molecule:lrr repeats and ubiquitin-like domain-containing PDBTitle: nmr solution structure of o64736 protein from arabidopsis2 thaliana. northeast structural genomics consortium mega3 target ar3445a 69 d1c06a_ not modelled 45.3 18 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 70 d1sifa_ not modelled 44.1 7 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 71 d1p9ka_ not modelled 43.7 18 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 72 d1oqya4 not modelled 42.8 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 73 c2jqlA_ not modelled 42.3 27 PDB header:cell cycle Chain: A: PDB Molecule:dna damage response protein kinase dun1; PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1 74 d2uubd1 not modelled 41.7 32 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 75 d2uyzb1 not modelled 40.6 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 76 c2k25A_ not modelled 39.8 6 PDB header:unknown function Chain: A: PDB Molecule:ubb; PDBTitle: automated nmr structure of the ubb by fapsy 77 c3a4rB_ not modelled 39.1 21 PDB header:transcription Chain: B: PDB Molecule:nfatc2-interacting protein; PDBTitle: the crystal structure of sumo-like domain 2 in nip45 78 d2piea1 not modelled 38.9 14 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 79 c2klcA_ not modelled 38.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr solution structure of human ubiquitin-like domain of2 ubiquilin 1, northeast structural genomics consortium3 (nesg) target ht5a 80 d1lgpa_ not modelled 38.1 22 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 81 c2ekeC_ not modelled 37.0 15 PDB header:ligase/protein binding Chain: C: PDB Molecule:ubiquitin-like protein smt3; PDBTitle: structure of a sumo-binding-motif mimic bound to smt3p-2 ubc9p: conservation of a noncovalent ubiquitin-like3 protein-e2 complex as a platform for selective4 interactions within a sumo pathway 82 c1r21A_ not modelled 36.8 23 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 83 d1kf6b2 not modelled 36.4 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 84 d1wiaa_ not modelled 36.2 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 85 c3bbnD_ not modelled 36.1 18 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 86 c2kklA_ not modelled 35.8 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 87 c3m63B_ not modelled 34.8 19 PDB header:ligase/protein binding Chain: B: PDB Molecule:ubiquitin domain-containing protein dsk2; PDBTitle: crystal structure of ufd2 in complex with the ubiquitin-like (ubl)2 domain of dsk2 88 c2ns5A_ not modelled 34.8 15 PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: the conserved n-terminal domain of par-3 adopts a novel pb1-2 like structure required for par-3 oligomerization and3 apical membrane localization 89 c1kskA_ not modelled 34.5 16 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 90 c1nyqA_ not modelled 34.4 22 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase 1; PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate 91 d2bwfa1 not modelled 33.7 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 92 c3gqsB_ not modelled 33.6 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 93 d1a5ra_ not modelled 32.6 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 94 d1uela_ not modelled 32.1 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 95 c3kt9A_ not modelled 31.5 13 PDB header:hydrolase Chain: A: PDB Molecule:aprataxin; PDBTitle: aprataxin fha domain 96 d1g3ga_ not modelled 31.0 27 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 97 c3hx1B_ not modelled 30.3 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1951 protein; PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a 98 d1ndda_ not modelled 29.0 7 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 99 c2ojrA_ not modelled 28.8 5 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin; PDBTitle: structure of ubiquitin solved by sad using the lanthanide-2 binding tag 100 d1g6ga_ not modelled 28.5 29 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 101 c3dh3C_ not modelled 28.3 18 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 102 c3u7zA_ not modelled 27.2 26 PDB header:metal binding protein Chain: A: PDB Molecule:putative metal binding protein rumgna_00854; PDBTitle: crystal structure of a putative metal binding protein rumgna_008542 (zp_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a3 resolution 103 d2gy9d1 not modelled 27.0 27 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 104 c2kdbA_ not modelled 26.3 14 PDB header:protein binding Chain: A: PDB Molecule:homocysteine-responsive endoplasmic reticulum- PDBTitle: solution structure of human ubiquitin-like domain of2 herpud2_9_85, northeast structural genomics consortium3 (nesg) target ht53a 105 d1wx8a1 not modelled 26.3 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 106 c1qf6A_ not modelled 26.3 12 PDB header:ligase/rna Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna 107 d1j8ca_ not modelled 26.1 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 108 d1bt0a_ not modelled 26.0 7 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 109 d1yjma1 not modelled 25.4 17 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 110 d1p1aa_ not modelled 25.4 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 111 c3poaA_ not modelled 25.1 33 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 112 d1wx7a1 not modelled 24.0 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 113 d2bs2b2 not modelled 23.9 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 114 d1wgda_ not modelled 23.8 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 115 d1wxma1 not modelled 23.6 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 116 c2dzmA_ not modelled 22.7 17 PDB header:structural genomics unknown function Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: solution structure of the ubiquitin-like domain in human2 fas-associated factor 1 (hfaf1) 117 d1wf9a1 not modelled 22.5 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 118 c1yj5C_ not modelled 22.2 17 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 119 c1qzeA_ not modelled 22.1 15 PDB header:replication Chain: A: PDB Molecule:uv excision repair protein rad23 homolog a; PDBTitle: hhr23a protein structure based on residual dipolar coupling2 data 120 d2zeqa1 not modelled 22.1 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0