Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP21889
DateThu Jan 5 11:38:40 GMT 2012
Unique Job ID6e771d18f05b6bbe

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1eqrC_
Top template information
PDB header:ligase
Chain: C: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli
Confidence and coverage
Confidence:100.0% Coverage:100%
590 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA
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Disorder  ?????




















?
?






























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   .........70.........80.........90.........100.........110.........120
Sequence  SELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEA
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?????????
?




















???
?


?

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   .........130.........140.........150.........160.........170.........180
Sequence  RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPS
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?












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   .........190.........200.........210.........220.........230.........240
Sequence  RVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT
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?






























??????
?













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   .........250.........260.........270.........280.........290.........300
Sequence  APQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLK
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   .........310.........320.........330.........340.........350.........360
Sequence  SVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKG
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???



























?



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   .........370.........380.........390.........400.........410.........420
Sequence  LEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLT
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   .........430.........440.........450.........460.........470.........480
Sequence  DESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVING
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   .........490.........500.........510.........520.........530.........540
Sequence  YEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTM
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??????????



























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   .........550.........560.........570.........580.........590
Sequence  LLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAENN
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Disorder 

















?????????????












??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1eqr chain C

3D model

Region: 1 - 590
Aligned: 590
Modelled: 590
Confidence: 100.0%
Identity: 100%
PDB header:ligase
Chain: C: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli

Phyre2

PDB 1efw chain A

3D model

Region: 1 - 586
Aligned: 569
Modelled: 579
Confidence: 100.0%
Identity: 50%
PDB header:ligase/rna
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli

Phyre2

PDB 1e22 chain A

3D model

Region: 2 - 556
Aligned: 421
Modelled: 438
Confidence: 100.0%
Identity: 28%
PDB header:ligase
Chain: A: PDB Molecule:lysyl-trna synthetase;
PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp

Phyre2

PDB 1wyd chain B

3D model

Region: 2 - 563
Aligned: 423
Modelled: 460
Confidence: 100.0%
Identity: 31%
PDB header:ligase
Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase;
PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii

Phyre2

PDB 3e9h chain B

3D model

Region: 2 - 559
Aligned: 436
Modelled: 451
Confidence: 100.0%
Identity: 27%
PDB header:ligase
Chain: B: PDB Molecule:lysyl-trna synthetase;
PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine

Phyre2

PDB 3bju chain B

3D model

Region: 2 - 559
Aligned: 428
Modelled: 455
Confidence: 100.0%
Identity: 26%
PDB header:ligase
Chain: B: PDB Molecule:lysyl-trna synthetase;
PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase

Phyre2

PDB 1b8a chain B

3D model

Region: 2 - 563
Aligned: 429
Modelled: 446
Confidence: 100.0%
Identity: 31%
PDB header:ligase
Chain: B: PDB Molecule:protein (aspartyl-trna synthetase);
PDBTitle: aspartyl-trna synthetase

Phyre2

PDB 1asy chain A

3D model

Region: 2 - 563
Aligned: 442
Modelled: 459
Confidence: 100.0%
Identity: 26%
PDB header:complex (aminoacyl-trna synthase/trna)
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp

Phyre2

PDB 2xgt chain B

3D model

Region: 6 - 563
Aligned: 426
Modelled: 454
Confidence: 100.0%
Identity: 25%
PDB header:ligase
Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic;
PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate

Phyre2

PDB 1x55 chain A

3D model

Region: 1 - 563
Aligned: 426
Modelled: 459
Confidence: 100.0%
Identity: 27%
PDB header:ligase
Chain: A: PDB Molecule:asparaginyl-trna synthetase;
PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue

Phyre2

PDB 3m4q chain A

3D model

Region: 3 - 563
Aligned: 422
Modelled: 461
Confidence: 100.0%
Identity: 24%
PDB header:ligase
Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative;
PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs)

Phyre2

PDB 3i7f chain A

3D model

Region: 2 - 563
Aligned: 438
Modelled: 453
Confidence: 100.0%
Identity: 24%
PDB header:ligase
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: aspartyl trna synthetase from entamoeba histolytica

Phyre2

PDB 1n9w chain A

3D model

Region: 1 - 555
Aligned: 354
Modelled: 432
Confidence: 100.0%
Identity: 37%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:aspartyl-trna synthetase 2;
PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus

Phyre2

PDB 1c0a chain A domain 3

3D model

Region: 108 - 585
Aligned: 345
Modelled: 345
Confidence: 100.0%
Identity: 100%
Fold: Class II aaRS and biotin synthetases
Superfamily: Class II aaRS and biotin synthetases
Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Phyre2

PDB 1l0w chain A domain 3

3D model

Region: 107 - 586
Aligned: 346
Modelled: 346
Confidence: 100.0%
Identity: 57%
Fold: Class II aaRS and biotin synthetases
Superfamily: Class II aaRS and biotin synthetases
Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Phyre2

PDB 1eov chain A domain 2

3D model

Region: 111 - 563
Aligned: 335
Modelled: 350
Confidence: 100.0%
Identity: 28%
Fold: Class II aaRS and biotin synthetases
Superfamily: Class II aaRS and biotin synthetases
Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Phyre2

PDB 1b8a chain A domain 2

3D model

Region: 107 - 563
Aligned: 331
Modelled: 352
Confidence: 100.0%
Identity: 30%
Fold: Class II aaRS and biotin synthetases
Superfamily: Class II aaRS and biotin synthetases
Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Phyre2

PDB 1n9w chain A domain 2

3D model

Region: 124 - 555
Aligned: 262
Modelled: 309
Confidence: 100.0%
Identity: 32%
Fold: Class II aaRS and biotin synthetases
Superfamily: Class II aaRS and biotin synthetases
Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Phyre2

PDB 1nnh chain A

3D model

Region: 127 - 571
Aligned: 272
Modelled: 285
Confidence: 100.0%
Identity: 28%
Fold: Class II aaRS and biotin synthetases
Superfamily: Class II aaRS and biotin synthetases
Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Phyre2

PDB 1e1o chain A domain 2

3D model

Region: 117 - 557
Aligned: 323
Modelled: 324
Confidence: 100.0%
Identity: 29%
Fold: Class II aaRS and biotin synthetases
Superfamily: Class II aaRS and biotin synthetases
Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Phyre2
1

c1eqrC_
2

c1efwA_
3

c1e22A_
4

c1wydB_
5

c3e9hB_
6

c3bjuB_
7

c1b8aB_
8

c1asyA_
9

c2xgtB_
10

c1x55A_
11

c3m4qA_
12

c3i7fA_
13

c1n9wA_
14

d1c0aa3
15

d1l0wa3
16

d1eova2
17

d1b8aa2
18

d1n9wa2
19

d1nnha_
20

d1e1oa2
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1eqrC_



100.0 100 PDB header:ligase
Chain: C: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli
2c1efwA_



100.0 50 PDB header:ligase/rna
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli
3c1e22A_



100.0 28 PDB header:ligase
Chain: A: PDB Molecule:lysyl-trna synthetase;
PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp
4c1wydB_



100.0 31 PDB header:ligase
Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase;
PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii
5c3e9hB_



100.0 27 PDB header:ligase
Chain: B: PDB Molecule:lysyl-trna synthetase;
PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine
6c3bjuB_



100.0 26 PDB header:ligase
Chain: B: PDB Molecule:lysyl-trna synthetase;
PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase
7c1b8aB_



100.0 31 PDB header:ligase
Chain: B: PDB Molecule:protein (aspartyl-trna synthetase);
PDBTitle: aspartyl-trna synthetase
8c1asyA_



100.0 26 PDB header:complex (aminoacyl-trna synthase/trna)
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp
9c2xgtB_



100.0 25 PDB header:ligase
Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic;
PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate
10c1x55A_



100.0 27 PDB header:ligase
Chain: A: PDB Molecule:asparaginyl-trna synthetase;
PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue
11c3m4qA_



100.0 24 PDB header:ligase
Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative;
PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs)
12c3i7fA_



100.0 24 PDB header:ligase
Chain: A: PDB Molecule:aspartyl-trna synthetase;
PDBTitle: aspartyl trna synthetase from entamoeba histolytica
13c1n9wA_



100.0 37 PDB header:biosynthetic protein
Chain: A: PDB Molecule:aspartyl-trna synthetase 2;
PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus
14d1c0aa3



100.0 100 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
15d1l0wa3



100.0 57 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
16d1eova2



100.0 28 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
17d1b8aa2



100.0 30 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
18d1n9wa2



100.0 32 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
19d1nnha_



100.0 28 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
20d1e1oa2



100.0 29 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
21d1bbua2



not modelled 100.0 30 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
22c3g1zB_



not modelled 100.0 29 PDB header:ligase
Chain: B: PDB Molecule:putative lysyl-trna synthetase;
PDBTitle: structure of idp01693/yjea, a potential t-rna synthetase from2 salmonella typhimurium
23c2znjB_



not modelled 100.0 27 PDB header:ligase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of pyrrolysyl-trna synthetase from2 desulfitobacterium hafniense
24d1c0aa1



not modelled 100.0 100 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
25c2zimA_



not modelled 100.0 27 PDB header:ligase
Chain: A: PDB Molecule:pyrrolysyl-trna synthetase;
PDBTitle: pyrrolysyl-trna synthetase bound to adenylated pyrrolysine and2 pyrophosphate
26d1kmma2



not modelled 100.0 18 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
27d1l0wa1



not modelled 100.0 50 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
28c1z7nB_



not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:atp phosphoribosyltransferase regulatory subunit;
PDBTitle: atp phosphoribosyl transferase (hiszg atp-prtase) from2 lactococcus lactis with bound prpp substrate
29d1h4vb2



not modelled 100.0 20 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
30c2rhqA_



not modelled 100.0 21 PDB header:ligase
Chain: A: PDB Molecule:phenylalanyl-trna synthetase alpha chain;
PDBTitle: phers from staphylococcus haemolyticus- rational protein2 engineering and inhibitor studies
31d1b8aa1



not modelled 100.0 35 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
32d1qe0a2



not modelled 100.0 14 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
33d1bbua1



not modelled 99.9 23 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
34d1e1oa1



not modelled 99.9 23 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
35d1wu7a2



not modelled 99.9 20 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
36c1b70A_



not modelled 99.9 32 PDB header:ligase
Chain: A: PDB Molecule:phenylalanyl-trna synthetase;
PDBTitle: phenylalanyl trna synthetase complexed with phenylalanine
37d1jjca_



not modelled 99.9 31 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
38c3racA_



not modelled 99.9 21 PDB header:ligase
Chain: A: PDB Molecule:histidine-trna ligase;
PDBTitle: crystal strucutre of histidine--trna ligase subunit from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446.
39d1n9wa1



not modelled 99.9 40 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
40d1eova1



not modelled 99.9 19 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
41d1krta_



not modelled 99.9 22 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
42c3pcoC_



not modelled 99.9 23 PDB header:ligase
Chain: C: PDB Molecule:phenylalanyl-trna synthetase, alpha subunit;
PDBTitle: crystal structure of e. coli phenylalanine-trna synthetase complexed2 with phenylalanine and amp
43c3l4gI_



not modelled 99.8 37 PDB header:ligase
Chain: I: PDB Molecule:phenylalanyl-trna synthetase alpha chain;
PDBTitle: crystal structure of homo sapiens cytoplasmic phenylalanyl-trna2 synthetase
44c2du4B_



not modelled 99.7 19 PDB header:ligase/rna
Chain: B: PDB Molecule:o-phosphoseryl-trna synthetase;
PDBTitle: crystal structure of archaeoglobus fulgidus o-phosphoseryl-2 trna synthetase complexed with trnacys
45c2du7C_



not modelled 99.6 20 PDB header:ligase
Chain: C: PDB Molecule:o-phosphoseryl-trna synthetase;
PDBTitle: crystal structure of methanococcus jannacshii o-phosphoseryl-trna2 synthetase
46d1c0aa2



not modelled 99.5 100 Fold:DCoH-like
Superfamily:GAD domain-like
Family:GAD domain
47c3od1A_



not modelled 99.5 17 PDB header:transferase
Chain: A: PDB Molecule:atp phosphoribosyltransferase regulatory subunit;
PDBTitle: the crystal structure of an atp phosphoribosyltransferase regulatory2 subunit/histidyl-trna synthetase from bacillus halodurans c
48d1z7ma1



not modelled 99.4 17 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
49c3cmqA_



not modelled 99.4 21 PDB header:ligase
Chain: A: PDB Molecule:phenylalanyl-trna synthetase, mitochondrial;
PDBTitle: crystal structure of human mitochondrial phenylalanine trna2 synthetase
50c1wu7A_



not modelled 99.3 19 PDB header:ligase
Chain: A: PDB Molecule:histidyl-trna synthetase;
PDBTitle: crystal structure of histidyl-trna synthetase from2 thermoplasma acidophilum
51c1adyA_



not modelled 99.3 17 PDB header:trna synthetase
Chain: A: PDB Molecule:histidyl-trna synthetase;
PDBTitle: histidyl-trna synthetase in complex with histidyl-adenylate
52c1nyqA_



not modelled 99.2 18 PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase 1;
PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate
53d1nyra4



not modelled 99.2 18 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
54c2i4lC_



not modelled 99.2 18 PDB header:ligase
Chain: C: PDB Molecule:proline-trna ligase;
PDBTitle: rhodopseudomonas palustris prolyl-trna synthetase
55c2el9B_



not modelled 99.2 16 PDB header:ligase
Chain: B: PDB Molecule:histidyl-trna synthetase;
PDBTitle: crystal structure of e.coli histidyl-trna synthetase2 complexed with a histidyl-adenylate analogue
56d1l0wa2



not modelled 99.1 40 Fold:DCoH-like
Superfamily:GAD domain-like
Family:GAD domain
57c2j3mA_



not modelled 99.1 14 PDB header:ligase
Chain: A: PDB Molecule:prolyl-trna synthetase;
PDBTitle: prolyl-trna synthetase from enterococcus faecalis complexed2 with atp, manganese and prolinol
58c3a32A_



not modelled 99.1 15 PDB header:ligase
Chain: A: PDB Molecule:probable threonyl-trna synthetase 1;
PDBTitle: crystal structure of putative threonyl-trna synthetase2 thrrs-1 from aeropyrum pernix
59d1hc7a2



not modelled 99.0 13 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
60d12asa_



not modelled 99.0 21 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
61c1fyfB_



not modelled 99.0 15 PDB header:ligase
Chain: B: PDB Molecule:threonyl-trna synthetase;
PDBTitle: crystal structure of a truncated form of threonyl-trna2 synthetase complexed with a seryl adenylate analog
62d1qf6a4



not modelled 99.0 18 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
63c3hriF_



not modelled 99.0 12 PDB header:ligase
Chain: F: PDB Molecule:histidyl-trna synthetase;
PDBTitle: histidyl-trna synthetase (apo) from trypanosoma brucei
64c1qf6A_



not modelled 99.0 17 PDB header:ligase/rna
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna
65c1h4tD_



not modelled 98.9 13 PDB header:aminoacyl-trna synthetase
Chain: D: PDB Molecule:prolyl-trna synthetase;
PDBTitle: prolyl-trna synthetase from thermus thermophilus complexed2 with l-proline
66c3lssA_



not modelled 98.9 15 PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp
67d1nj8a3



not modelled 98.9 22 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
68c3ialB_



not modelled 98.9 14 PDB header:ligase
Chain: B: PDB Molecule:prolyl-trna synthetase;
PDBTitle: giardia lamblia prolyl-trna synthetase in complex with prolyl-2 adenylate
69c1ggmB_



not modelled 98.9 21 PDB header:ligase
Chain: B: PDB Molecule:protein (glycyl-trna synthetase);
PDBTitle: glycyl-trna synthetase from thermus thermophilus complexed with2 glycyl-adenylate
70c1nj8C_



not modelled 98.8 22 PDB header:ligase
Chain: C: PDB Molecule:proline-trna synthetase;
PDBTitle: crystal structure of prolyl-trna synthetase from2 methanocaldococcus janaschii
71c1atiA_



not modelled 98.8 20 PDB header:protein biosynthesis
Chain: A: PDB Molecule:glycyl-trna synthetase;
PDBTitle: crystal structure of glycyl-trna synthetase from thermus thermophilus
72c3netB_



not modelled 98.8 21 PDB header:ligase
Chain: B: PDB Molecule:histidyl-trna synthetase;
PDBTitle: crystal structure of histidyl-trna synthetase from nostoc sp. pcc 7120
73d1nj1a3



not modelled 98.7 23 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
74d1atia2



not modelled 98.6 18 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
75c1qe0B_



not modelled 98.6 18 PDB header:ligase
Chain: B: PDB Molecule:histidyl-trna synthetase;
PDBTitle: crystal structure of apo s. aureus histidyl-trna synthetase
76c1nj2A_



not modelled 98.6 22 PDB header:ligase
Chain: A: PDB Molecule:proline-trna synthetase;
PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus
77d1b76a2



not modelled 98.5 22 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
78c3qo8A_



not modelled 98.5 15 PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic;
PDBTitle: crystal structure of seryl-trna synthetase from candida albicans
79c1sryB_



not modelled 98.5 16 PDB header:ligase(synthetase)
Chain: B: PDB Molecule:seryl-trna synthetase;
PDBTitle: refined crystal structure of the seryl-trna synthetase from2 thermus thermophilus at 2.5 angstroms resolution
80c1wleB_



not modelled 98.5 15 PDB header:ligase
Chain: B: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate
81d1seta2



not modelled 98.4 15 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
82c2dq0A_



not modelled 98.4 12 PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog
83c3errB_



not modelled 98.3 15 PDB header:ligase
Chain: B: PDB Molecule:fusion protein of microtubule binding domain from
PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase
84c2dq3A_



not modelled 98.3 14 PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of aq_298
85c2cj9A_



not modelled 98.2 11 PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of methanosarcina barkeri seryl-trna2 synthetase complexed with an analog of seryladenylate
86c3mf2B_



not modelled 98.2 13 PDB header:ligase
Chain: B: PDB Molecule:bll0957 protein;
PDBTitle: crystal structure of class ii aars homologue (bll0957) complexed with2 amp
87c3kf6A_



not modelled 98.0 21 PDB header:structural protein
Chain: A: PDB Molecule:protein stn1;
PDBTitle: crystal structure of s. pombe stn1-ten1 complex
88c3e0eA_



not modelled 97.8 21 PDB header:replication
Chain: A: PDB Molecule:replication protein a;
PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b
89d1usya_



not modelled 97.8 15 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
90d1g5ha2



not modelled 97.7 14 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
91c2pmfA_



not modelled 97.6 27 PDB header:ligase
Chain: A: PDB Molecule:glycyl-trna synthetase;
PDBTitle: the crystal structure of a human glycyl-trna synthetase mutant
92c3ikmC_



not modelled 97.6 12 PDB header:transferase
Chain: C: PDB Molecule:dna polymerase subunit gamma-2;
PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme
93c3dm3A_



not modelled 97.3 25 PDB header:replication
Chain: A: PDB Molecule:replication factor a;
PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e
94c3l4gL_



not modelled 97.3 12 PDB header:ligase
Chain: L: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: crystal structure of homo sapiens cytoplasmic phenylalanyl-trna2 synthetase
95d2pi2a1



not modelled 97.2 19 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
96c2k50A_



not modelled 97.0 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:replication factor a related protein;
PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a.
97c3ig2B_



not modelled 97.0 15 PDB header:ligase
Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: the crystal structure of a putative phenylalanyl-trna synthetase2 (phers) beta chain domain from bacteroides fragilis to 2.1a
98c1g5hA_



not modelled 96.9 24 PDB header:dna binding protein
Chain: A: PDB Molecule:mitochondrial dna polymerase accessory subunit;
PDBTitle: crystal structure of the accessory subunit of murine mitochondrial2 polymerase gamma
99c2pi2A_



not modelled 96.5 19 PDB header:replication, dna binding protein
Chain: A: PDB Molecule:replication protein a 32 kda subunit;
PDBTitle: full-length replication protein a subunits rpa14 and rpa32
100c3icaB_



not modelled 96.4 14 PDB header:ligase
Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: the crystal structure of the beta subunit of a phenylalanyl-trna2 synthetase from porphyromonas gingivalis w83
101d1jjcb5



not modelled 96.2 16 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
102d1nnxa_



not modelled 96.2 16 Fold:OB-fold
Superfamily:Hypothetical protein YgiW
Family:Hypothetical protein YgiW
103c2pqaB_



not modelled 96.1 12 PDB header:replication
Chain: B: PDB Molecule:replication protein a 14 kda subunit;
PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer
104c1ynxA_



not modelled 95.9 17 PDB header:dna binding protein
Chain: A: PDB Molecule:replication factor-a protein 1;
PDBTitle: solution structure of dna binding domain a (dbd-a) of2 s.cerevisiae replication protein a (rpa)
105c3kf8C_



not modelled 95.9 12 PDB header:structural protein
Chain: C: PDB Molecule:protein stn1;
PDBTitle: crystal structure of c. tropicalis stn1-ten1 complex
106d1gm5a2



not modelled 95.9 15 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:RecG "wedge" domain
107d2pi2e1



not modelled 95.7 12 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
108d1jmca1



not modelled 95.1 16 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
109c3f2cA_



not modelled 94.7 18 PDB header:transferase/dna
Chain: A: PDB Molecule:geobacillus kaustophilus dna polc;
PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn
110c1fguA_



not modelled 94.5 13 PDB header:replication
Chain: A: PDB Molecule:replication protein a 70 kda dna-binding subunit;
PDBTitle: ssdna-binding domain of the large subunit of replication2 protein a
111c2k75A_



not modelled 94.4 12 PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein ta0387;
PDBTitle: solution nmr structure of the ob domain of ta0387 from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar80b.
112d2g4ca2



not modelled 93.5 14 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
113c3pcoD_



not modelled 92.5 9 PDB header:ligase
Chain: D: PDB Molecule:phenylalanyl-trna synthetase, beta chain;
PDBTitle: crystal structure of e. coli phenylalanine-trna synthetase complexed2 with phenylalanine and amp
114c1gm5A_



not modelled 90.8 22 PDB header:helicase
Chain: A: PDB Molecule:recg;
PDBTitle: structure of recg bound to three-way dna junction
115d1j5wa_



not modelled 89.7 27 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
116c1z9fA_



not modelled 89.6 18 PDB header:dna binding protein
Chain: A: PDB Molecule:single-strand binding protein;
PDBTitle: crystal structure of single stranded dna-binding protein (tm0604) from2 thermotoga maritima at 2.60 a resolution
117c3rf1B_



not modelled 89.2 27 PDB header:ligase
Chain: B: PDB Molecule:glycyl-trna synthetase alpha subunit;
PDBTitle: the crystal structure of glycyl-trna synthetase subunit alpha from2 campylobacter jejuni subsp. jejuni nctc 11168
118c2rhsB_



not modelled 89.0 16 PDB header:ligase
Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: phers from staphylococcus haemolyticus- rational protein2 engineering and inhibitor studies
119c2kenA_



not modelled 86.3 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: solution nmr structure of the ob domain (residues 67-166)2 of mm0293 from methanosarcina mazei. northeast structural3 genomics consortium target mar214a.
120d3ulla_



not modelled 85.8 14 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0