PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3od1A_

Fold library id	PDB Header	Molecule	Title
c3od1A_	PDB header: transferase	Chain: A: PDB Molecule: atp phosphoribosyltransferase regulatory subunit;	PDBTitle: the crystal structure of an atp phosphoribosyltransferase regulatory2 subunit/histidyl-trna synthetase from bacillus halodurans c

Links to external resources
Added to library: Sat Aug 28 16:02:05 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K P F X F E K P F G X R D T L P E W Y K T K K N I C D Q X T E E I N L W G Y D X I E T P T L E Y Y E T V G V V S A I L D Q Q L F K L L D Q Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T
S T T T S S S
G G G S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G N T L V L R P D X T A P I A R L V A S S L K D R A Y P L R L A Y Q S N V Y R A Q Q G K P A E F E Q L G V E L I G D G T A S A D G E V I A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S
S S S
S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence X I A A L K R A G L S E F K V A I G H V G Y V N A L L X D V V G N E Q R A D R L R R F L Y E K N Y V G Y R E H V K S L N L S T I D K S R L X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence N L L S L R G G R A A I E E A R G L I Q T E K G K T A L A E X T K L Y E V L E S Y G A S E Y V K F D L T L V L H X S Y Y T G V V F E G Y G N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S T T
S T T
G G G T T
S
S S S
S T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence R L G V P L C S G G R Y D E L L S K F H R P A Q A T G F G V R I D L L V E A L N G H E Q T C I L F S N E R R F E A I E L A R K K R A N G E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T T T T
G G G T T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . .

Sequence V V L Q D L A G V T D V D A X S S N Y Q D V I Y C I G T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S
T T S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	P	F	X	F	E	K	P	F	G	X	R	D	T	L	P	E	W	Y	K	T	K	K	N	I	C	D	Q	X	T	E	E	I	N	L	W	G	Y	D	X	I	E	T	P	T	L	E	Y	Y	E	T	V	G	V	V	S	A	I	L	D	Q	Q	L	F	K	L	L	D	Q	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T				T	T																										T	T								S				T	T	T					S	S	S		G	G	G	S						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	N	T	L	V	L	R	P	D	X	T	A	P	I	A	R	L	V	A	S	S	L	K	D	R	A	Y	P	L	R	L	A	Y	Q	S	N	V	Y	R	A	Q	Q	G	K	P	A	E	F	E	Q	L	G	V	E	L	I	G	D	G	T	A	S	A	D	G	E	V	I	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S							S		S													S	S	S		S																			S											S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	X	I	A	A	L	K	R	A	G	L	S	E	F	K	V	A	I	G	H	V	G	Y	V	N	A	L	L	X	D	V	V	G	N	E	Q	R	A	D	R	L	R	R	F	L	Y	E	K	N	Y	V	G	Y	R	E	H	V	K	S	L	N	L	S	T	I	D	K	S	R	L	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T			S																																		T	T												S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	N	L	L	S	L	R	G	G	R	A	A	I	E	E	A	R	G	L	I	Q	T	E	K	G	K	T	A	L	A	E	X	T	K	L	Y	E	V	L	E	S	Y	G	A	S	E	Y	V	K	F	D	L	T	L	V	L	H	X	S	Y	Y	T	G	V	V	F	E	G	Y	G	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G				S									T	T			S																				T	T		G	G	G					T	T			S		S	S	S			S								T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	R	L	G	V	P	L	C	S	G	G	R	Y	D	E	L	L	S	K	F	H	R	P	A	Q	A	T	G	F	G	V	R	I	D	L	L	V	E	A	L	N	G	H	E	Q	T	C	I	L	F	S	N	E	R	R	F	E	A	I	E	L	A	R	K	K	R	A	N	G	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		S	S									T	T					T	T																															G	G	G													T	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Sequence	V	V	L	Q	D	L	A	G	V	T	D	V	D	A	X	S	S	N	Y	Q	D	V	I	Y	C	I	G	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G		S							T	T	S	S							S