Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	V	Q	T	S	K	N	P	Q	V	D	I	A	E	D	N	A	F	F	P	S	E	Y	S	L	S	Q	Y	T	S	P	V	S	D	L	D	G	V	D	Y	P	K	P	Y	R	G	K	H	K	I	L	V	I	A	A	D	E	R	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?									?	?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	P	T	D	N	G	K	L	F	S	T	G	N	H	P	I	E	T	L	L	P	L	Y	H	L	H	A	A	G	F	E	F	E	V	A	T	I	S	G	L	M	T	K	F	E	Y	W	A	M	P	H	K	D	E	K	V	M	P	F	F
Secondary structure
SS confidence
Disorder				?	?	?																																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	Q	H	K	S	L	F	R	N	P	K	K	L	A	D	V	V	A	S	L	N	A	D	S	E	Y	A	A	I	F	V	P	G	G	H	G	A	L	I	G	L	P	E	S	Q	D	V	A	A	A	L	Q	W	A	I	K	N	D	R	F
Secondary structure
SS confidence
Disorder								?	?					?				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	I	S	L	C	H	G	P	A	A	F	L	A	L	R	H	G	D	N	P	L	N	G	Y	S	I	C	A	F	P	D	A	A	D	K	Q	T	P	E	I	G	Y	M	P	G	H	L	T	W	Y	F	G	E	E	L	K	K	M	G	M
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Sequence		N	I	I	N	D	D	I	T	G	R	V	H	K	D	R	K	L	L	T	G	D	S	P	F	A	A	N	A	L	G	K	L	A	A	Q	E	M	L	A	A	Y	A	G
Secondary structure
SS confidence
Disorder																																									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1n57 chain A Region: 5 - 283 Aligned: 279 Modelled: 279 Confidence: 100.0% Identity: 97% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 1qvw chain A Region: 47 - 279 Aligned: 225 Modelled: 233 Confidence: 100.0% Identity: 18% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3n7t chain A Region: 48 - 279 Aligned: 223 Modelled: 232 Confidence: 100.0% Identity: 23% PDB header:protein binding Chain: A: PDB Molecule:macrophage binding protein; PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis Phyre2 PDB 3kkl chain A Region: 48 - 277 Aligned: 208 Modelled: 215 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae Phyre2 PDB 1u9c chain A Region: 48 - 280 Aligned: 216 Modelled: 233 Confidence: 100.0% Identity: 19% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 1vhq chain A Region: 48 - 274 Aligned: 190 Modelled: 198 Confidence: 100.0% Identity: 19% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3uk7 chain B Region: 47 - 277 Aligned: 186 Modelled: 198 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d Phyre2 PDB 3fse chain B Region: 48 - 277 Aligned: 167 Modelled: 175 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution Phyre2 PDB 3l3b chain A Region: 50 - 280 Aligned: 191 Modelled: 199 Confidence: 100.0% Identity: 16% PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution Phyre2 PDB 1oi4 chain A domain 1 Region: 49 - 277 Aligned: 168 Modelled: 181 Confidence: 100.0% Identity: 21% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3cne chain D Region: 49 - 277 Aligned: 167 Modelled: 160 Confidence: 100.0% Identity: 13% PDB header:hydrolase Chain: D: PDB Molecule:putative protease i; PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron Phyre2 PDB 1g2i chain A Region: 49 - 277 Aligned: 165 Modelled: 174 Confidence: 100.0% Identity: 19% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 1p5f chain A Region: 49 - 280 Aligned: 172 Modelled: 179 Confidence: 100.0% Identity: 23% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 2vrn chain A Region: 47 - 280 Aligned: 175 Modelled: 185 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:protease i; PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily Phyre2 PDB 3ot1 chain B Region: 48 - 278 Aligned: 169 Modelled: 177 Confidence: 99.9% Identity: 18% PDB header:structural genomics Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate PDBTitle: crystal structure of vc2308 protein Phyre2 PDB 1sy7 chain B Region: 9 - 277 Aligned: 190 Modelled: 205 Confidence: 99.9% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:catalase 1; PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution. Phyre2 PDB 2ab0 chain A domain 1 Region: 48 - 280 Aligned: 174 Modelled: 182 Confidence: 99.9% Identity: 24% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 1sy7 chain A domain 1 Region: 48 - 283 Aligned: 173 Modelled: 182 Confidence: 99.9% Identity: 13% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Catalase, C-terminal domain Phyre2 PDB 2fex chain A domain 1 Region: 48 - 277 Aligned: 168 Modelled: 174 Confidence: 99.9% Identity: 20% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 3efe chain C Region: 49 - 277 Aligned: 167 Modelled: 174 Confidence: 99.9% Identity: 16% PDB header:chaperone Chain: C: PDB Molecule:thij/pfpi family protein; PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis Phyre2 1 d1n57a_ 2 d1qvwa_ 3 c3n7tA_ 4 c3kklA_ 5 d1u9ca_ 6 d1vhqa_ 7 c3uk7B_ 8 c3fseB_ 9 c3l3bA_ 10 d1oi4a1 11 c3cneD_ 12 d1g2ia_ 13 d1p5fa_ 14 c2vrnA_ 15 c3ot1B_ 16 c1sy7B_ 17 d2ab0a1 18 d1sy7a1 19 d2fexa1 20 c3efeC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1n57a_ 100.0 97 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 2 d1qvwa_ 100.0 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 3 c3n7tA_ 100.0 23 PDB header:protein binding Chain: A: PDB Molecule:macrophage binding protein; PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis 4 c3kklA_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:probable chaperone protein hsp33; PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae 5 d1u9ca_ 100.0 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 6 d1vhqa_ 100.0 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 7 c3uk7B_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d 8 c3fseB_ 100.0 22 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 9 c3l3bA_ 100.0 16 PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution 10 d1oi4a1 100.0 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 11 c3cneD_ 100.0 13 PDB header:hydrolase Chain: D: PDB Molecule:putative protease i; PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron 12 d1g2ia_ 100.0 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 13 d1p5fa_ 100.0 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 14 c2vrnA_ 99.9 20 PDB header:hydrolase Chain: A: PDB Molecule:protease i; PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily 15 c3ot1B_ 99.9 18 PDB header:structural genomics Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate PDBTitle: crystal structure of vc2308 protein 16 c1sy7B_ 99.9 14 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase 1; PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution. 17 d2ab0a1 99.9 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 18 d1sy7a1 99.9 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 19 d2fexa1 99.9 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 20 c3efeC_ 99.9 16 PDB header:chaperone Chain: C: PDB Molecule:thij/pfpi family protein; PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis 21 c3mgkA_ not modelled 99.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:intracellular protease/amidase related enzyme PDBTitle: crystal structure of probable protease/amidase from2 clostridium acetobutylicum atcc 824 22 c3f5dA_ not modelled 99.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ydea; PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis 23 c3ewnA_ not modelled 99.8 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae 24 c3nooB_ not modelled 99.8 23 PDB header:lyase Chain: B: PDB Molecule:thij/pfpi family protein; PDBTitle: crystal structure of c101a isocyanide hydratase from pseudomonas2 fluorescens 25 c3bhnA_ not modelled 99.7 10 PDB header:unknown function Chain: A: PDB Molecule:thij/pfpi domain protein; PDBTitle: crystal structure of a dj-1/pfpi-like protein (shew_2856) from2 shewanella loihica pv-4 at 1.76 a resolution 26 c3er6D_ not modelled 99.7 13 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative transcriptional regulator protein; PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus 27 c3graA_ not modelled 99.7 18 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, arac family; PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida 28 d1p80a1 not modelled 99.6 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 29 c1p81A_ not modelled 99.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase hpii; PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli 30 d1t3ta2 not modelled 98.0 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 31 d1q7ra_ not modelled 97.7 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 32 c3ej6D_ not modelled 97.6 18 PDB header:oxidoreductase Chain: D: PDB Molecule:catalase-3; PDBTitle: neurospora crassa catalase-3 crystal structure 33 c2issF_ not modelled 97.2 21 PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima 34 d1o1ya_ not modelled 97.2 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 35 c3l7nA_ not modelled 97.1 16 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c 36 c3d54D_ not modelled 96.9 20 PDB header:ligase Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1; PDBTitle: stucture of purlqs from thermotoga maritima 37 d1gpma2 not modelled 96.9 23 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 38 d1jvna2 not modelled 96.9 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 39 c3l4eA_ not modelled 96.8 15 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 40 d1wl8a1 not modelled 96.7 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 41 c2ywjA_ not modelled 96.6 24 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii 42 d2nv0a1 not modelled 96.6 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 43 c2ywdA_ not modelled 96.5 20 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of glutamine amidotransferase 44 c3l83A_ not modelled 96.4 13 PDB header:transferase Chain: A: PDB Molecule:glutamine amido transferase; PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus 45 d2a9va1 not modelled 96.4 8 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 46 d1a9xb2 not modelled 96.2 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 47 d1ka9h_ not modelled 96.2 12 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 48 d1qdlb_ not modelled 96.2 10 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 49 c1keeH_ not modelled 96.0 20 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 50 d2abwa1 not modelled 95.9 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 51 d1k9vf_ not modelled 95.8 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 52 d1s1ma1 not modelled 95.6 25 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 53 d1vcoa1 not modelled 95.4 29 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 54 d1i1qb_ not modelled 95.3 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 55 c2ad5B_ not modelled 95.1 27 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 56 c1jvnB_ not modelled 95.1 15 PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites 57 c3r74B_ not modelled 95.0 19 PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 58 d2ghra1 not modelled 94.8 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:HTS-like 59 c2w7tA_ not modelled 94.8 32 PDB header:ligase Chain: A: PDB Molecule:putative cytidine triphosphate synthase; PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin 60 c3nvaB_ not modelled 94.7 20 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 61 c2iufA_ not modelled 94.6 15 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase; PDBTitle: the structures of penicillium vitale catalase: resting2 state, oxidised state (compound i) and complex with3 aminotriazole 62 d1fyea_ not modelled 94.4 16 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Aspartyl dipeptidase PepE 63 d1e5da1 not modelled 94.0 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 64 d1ycga1 not modelled 94.0 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 65 c1vcnA_ not modelled 93.7 26 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion 66 c2h2wA_ not modelled 93.6 14 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 67 d1i7qb_ not modelled 93.1 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 68 c3fijD_ not modelled 93.0 16 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 69 d1t5ba_ not modelled 92.3 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 70 c3uowB_ not modelled 92.3 9 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 71 c2v4uA_ not modelled 91.5 28 PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine 72 c2ywcC_ not modelled 91.1 12 PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp 73 c3klbA_ not modelled 90.4 14 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 74 d2a5la1 not modelled 90.2 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 75 d1kwga3 not modelled 90.0 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:A4 beta-galactosidase middle domain 76 c2zkiH_ not modelled 89.3 15 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 77 c3fniA_ not modelled 88.7 11 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 78 c3en0A_ not modelled 88.4 20 PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase 79 c1gpmD_ not modelled 87.9 20 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 80 c2q9uB_ not modelled 87.4 20 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 81 d1ydga_ not modelled 86.5 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 82 d1f0ka_ not modelled 85.4 28 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 83 c1t3tA_ not modelled 85.3 20 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase; PDBTitle: structure of formylglycinamide synthetase 84 c2vpiA_ not modelled 84.7 19 PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain 85 d1a9xa3 not modelled 83.6 10 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 86 c2vxoB_ not modelled 83.3 18 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: human gmp synthetase in complex with xmp 87 d1dxqa_ not modelled 82.8 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 88 d1l9xa_ not modelled 82.7 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 89 c1l9xA_ not modelled 82.7 20 PDB header:hydrolase Chain: A: PDB Molecule:gamma-glutamyl hydrolase; PDBTitle: structure of gamma-glutamyl hydrolase 90 c3ia7A_ not modelled 82.6 22 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 91 c1kwgA_ not modelled 81.6 18 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase 92 c3tqiB_ not modelled 80.9 20 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 93 d2fz5a1 not modelled 79.9 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 94 c3edoA_ not modelled 78.2 12 PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution 95 c2q62A_ not modelled 77.7 15 PDB header:flavoprotein Chain: A: PDB Molecule:arsh; PDBTitle: crystal structure of arsh from sinorhizobium meliloti 96 d1t0ia_ not modelled 77.7 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 97 d1mkza_ not modelled 73.2 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 98 c2p6pB_ not modelled 72.4 20 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 99 d1pn3a_ not modelled 68.8 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 100 c2iyaB_ not modelled 67.9 21 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 101 c3d0qB_ not modelled 67.0 20 PDB header:transferase Chain: B: PDB Molecule:protein calg3; PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222 102 d1qrda_ not modelled 66.7 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 103 d1rrva_ not modelled 65.5 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 104 d1vmea1 not modelled 65.4 21 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 105 d2gk3a1 not modelled 65.0 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:STM3548-like 106 c3rfqC_ not modelled 63.7 22 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 107 d1iira_ not modelled 63.5 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 108 c3hlyA_ not modelled 62.9 16 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 109 c2iyfA_ not modelled 60.6 23 PDB header:transferase Chain: A: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 110 c3dahB_ not modelled 58.7 15 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei 111 d1y5ea1 not modelled 58.0 22 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 112 c3f6sI_ not modelled 57.7 25 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 113 d1rzua_ not modelled 56.0 19 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 114 c3iaaB_ not modelled 55.1 20 PDB header:transferase Chain: B: PDB Molecule:calg2; PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form 115 d1d4aa_ not modelled 54.5 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 116 c2qzsA_ not modelled 53.6 19 PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) 117 d2qwxa1 not modelled 53.0 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Quinone reductase 118 c3othB_ not modelled 52.6 31 PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form 119 c1ps9A_ not modelled 48.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 120 c3lcmB_ not modelled 48.8 7 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0