Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ46799
DateThu Jan 5 12:34:21 GMT 2012
Unique Job ID5f0c987a4aa10aac

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1ffvB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava
Confidence and coverage
Confidence:100.0% Coverage: 98%
740 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRVDAIAKVTGRARYTDDYVMAGMCYAKYVRSPIAHGYAVSINDEQARSLPGVLAIFTWE
Secondary structure 
SS confidence 
Disorder  ?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DVPDIPFATAGHAWTLDENKRDTADRALLTRHVRHHGDAVAIVVARDELTAEKAAQLVSI
Secondary structure 
SS confidence 
Disorder 
????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  EWQELPVITTPEAALAEDAAPIHNGGNLLKQSTMSTGNVQQTIDAADYQVQGHYQTPVIQ
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  HCHMESVTSLAWMEDDSRITIVSSTQIPHIVRRVVGQALDIPWSCVRVIKPFVGGGFGNK
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  QDVLEEPMAAFLTSKLGGIPVKVSLSREECFLATRTRHAFTIDGQMGVNRDGTLKGYSLD
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  VLSNTGAYASHGHSIASAGGNKVAYLYPRCAYAYSSKTCYTNLPSAGAMRGYGAPQVVFA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  VESMLDDAATALGIDPVEIRLRNAAREGDANPLTGKRIYSAGLPECLEKGRKIFEWEKRR
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  AECQNQQGNLRRGVGVACFSYTSNTWPVGVEIAGARLLMNQDGTINVQSGATEIGQGADT
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  VFSQMVAETVGVPVSDVRVISTQDTDVTPFDPGAFASRQSYVAAPALRSAALLLKEKIIA
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  HAAVMLHQSAMNLTLIKGHIVLVERPEEPLMSLKDLAMDAFYHPERGGQLSAESSIKTTT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  NPPAFGCTFVDLTVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  MIIDAKSGVVRNPNLLDYKMPTMPDLPQLESAFVEINEPQSAYGHKSLGEPPIIPVAAAI
Secondary structure 
SS confidence 
Disorder 
????
?
Disorder confidence 
 
   .........730.........740.........750..
Sequence  RNAVKMATGVAINTLPLTPKRLYEEFHLAGLI
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ffv chain B

3D model

Region: 2 - 751
Aligned: 740
Modelled: 743
Confidence: 100.0%
Identity: 27%
PDB header:hydrolase
Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava

Phyre2

PDB 1sb3 chain D

3D model

Region: 2 - 749
Aligned: 731
Modelled: 735
Confidence: 100.0%
Identity: 33%
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica

Phyre2

PDB 1n62 chain E

3D model

Region: 2 - 751
Aligned: 740
Modelled: 743
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain;
PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state

Phyre2

PDB 1t3q chain B

3D model

Region: 1 - 749
Aligned: 743
Modelled: 749
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: B: PDB Molecule:quinoline 2-oxidoreductase large subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86

Phyre2

PDB 2w54 chain F

3D model

Region: 2 - 749
Aligned: 725
Modelled: 747
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: F: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase from2 rhodobacter capsulatus in complex with bound inhibitor3 pterin-6-aldehyde

Phyre2

PDB 1wyg chain A

3D model

Region: 1 - 746
Aligned: 712
Modelled: 723
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)

Phyre2

PDB 3eub chain L

3D model

Region: 2 - 749
Aligned: 714
Modelled: 747
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine

Phyre2

PDB 1vlb chain A

3D model

Region: 2 - 747
Aligned: 716
Modelled: 728
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a

Phyre2

PDB 1dgj chain A

3D model

Region: 2 - 746
Aligned: 713
Modelled: 723
Confidence: 100.0%
Identity: 25%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774

Phyre2

PDB 1rm6 chain A domain 2

3D model

Region: 129 - 749
Aligned: 612
Modelled: 621
Confidence: 100.0%
Identity: 33%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1n62 chain B domain 2

3D model

Region: 129 - 751
Aligned: 620
Modelled: 623
Confidence: 100.0%
Identity: 24%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1ffv chain B domain 2

3D model

Region: 133 - 751
Aligned: 616
Modelled: 619
Confidence: 100.0%
Identity: 26%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1jro chain B domain 2

3D model

Region: 126 - 749
Aligned: 611
Modelled: 618
Confidence: 100.0%
Identity: 25%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1t3q chain B domain 2

3D model

Region: 149 - 749
Aligned: 597
Modelled: 601
Confidence: 100.0%
Identity: 26%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1v97 chain A domain 5

3D model

Region: 128 - 749
Aligned: 599
Modelled: 620
Confidence: 100.0%
Identity: 24%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1vlb chain A domain 4

3D model

Region: 129 - 747
Aligned: 590
Modelled: 601
Confidence: 100.0%
Identity: 27%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 1dgj chain A domain 4

3D model

Region: 129 - 746
Aligned: 587
Modelled: 596
Confidence: 100.0%
Identity: 25%
Fold: Molybdenum cofactor-binding domain
Superfamily: Molybdenum cofactor-binding domain
Family: Molybdenum cofactor-binding domain

Phyre2

PDB 3hrd chain E

3D model

Region: 2 - 416
Aligned: 404
Modelled: 415
Confidence: 100.0%
Identity: 32%
PDB header:oxidoreductase
Chain: E: PDB Molecule:nicotinate dehydrogenase large molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase

Phyre2

PDB 3hrd chain F

3D model

Region: 430 - 749
Aligned: 317
Modelled: 320
Confidence: 100.0%
Identity: 28%
PDB header:oxidoreductase
Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase

Phyre2

PDB 1t3q chain B domain 1

3D model

Region: 1 - 148
Aligned: 145
Modelled: 148
Confidence: 100.0%
Identity: 37%
Fold: alpha/beta-Hammerhead
Superfamily: CO dehydrogenase molybdoprotein N-domain-like
Family: CO dehydrogenase molybdoprotein N-domain-like

Phyre2
1
c1ffvB_
2
c1sb3D_
3
c1n62E_
4
c1t3qB_
5
c2w54F_
6
c1wygA_
7
c3eubL_
8
c1vlbA_
9
c1dgjA_
10
d1rm6a2
11
d1n62b2
12
d1ffvb2
13
d1jrob2
14
d1t3qb2
15
d1v97a5
16
d1vlba4
17
d1dgja4
18
c3hrdE_
19
c3hrdF_
20
d1t3qb1
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
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41
42
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44
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52
53
54
55
56
57
58
59
60
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62
63
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99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ffvB_
100.0 27 PDB header:hydrolase
Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava
2c1sb3D_
100.0 33 PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
3c1n62E_
100.0 26 PDB header:oxidoreductase
Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain;
PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state
4c1t3qB_
100.0 28 PDB header:oxidoreductase
Chain: B: PDB Molecule:quinoline 2-oxidoreductase large subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
5c2w54F_
100.0 25 PDB header:oxidoreductase
Chain: F: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase from2 rhodobacter capsulatus in complex with bound inhibitor3 pterin-6-aldehyde
6c1wygA_
100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)
7c3eubL_
100.0 25 PDB header:oxidoreductase
Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine
8c1vlbA_
100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a
9c1dgjA_
100.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774
10d1rm6a2
100.0 33 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
11d1n62b2
100.0 24 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
12d1ffvb2
100.0 26 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
13d1jrob2
100.0 25 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
14d1t3qb2
100.0 26 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
15d1v97a5
100.0 24 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
16d1vlba4
100.0 27 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
17d1dgja4
100.0 25 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
18c3hrdE_
100.0 32 PDB header:oxidoreductase
Chain: E: PDB Molecule:nicotinate dehydrogenase large molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase
19c3hrdF_
100.0 28 PDB header:oxidoreductase
Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase
20d1t3qb1
100.0 37 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
21d1ffvb1
not modelled 100.0 34 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
22d1v97a3
not modelled 100.0 26 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
23d1n62b1
not modelled 100.0 32 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
24d3b9jc1
not modelled 100.0 26 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
25d1rm6a1
not modelled 100.0 37 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
26d1jrob1
not modelled 100.0 30 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
27d1vlba3
not modelled 100.0 27 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
28d1dgja3
not modelled 100.0 24 Fold:alpha/beta-Hammerhead
Superfamily:CO dehydrogenase molybdoprotein N-domain-like
Family:CO dehydrogenase molybdoprotein N-domain-like
29d1knwa2
not modelled 52.5 16 Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
30c2rghA_
not modelled 52.3 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
31c2kwpA_
not modelled 49.4 23 PDB header:transcription
Chain: A: PDB Molecule:transcription elongation protein nusa;
PDBTitle: solution structure of the aminoterminal domain of e. coli nusa
32d1hh2p4
not modelled 48.4 18 Fold:Transcription factor NusA, N-terminal domain
Superfamily:Transcription factor NusA, N-terminal domain
Family:Transcription factor NusA, N-terminal domain
33c3n2oA_
not modelled 47.4 20 PDB header:lyase
Chain: A: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus
34d1otfa_
not modelled 46.0 22 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
35c1vraA_
not modelled 43.8 31 PDB header:transferase
Chain: A: PDB Molecule:arginine biosynthesis bifunctional protein argj;
PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
36c2op8A_
not modelled 42.7 14 PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase ywhb;
PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase
37c3abfB_
not modelled 41.4 28 PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242)
38d2aala1
not modelled 40.7 13 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MSAD-like
39d1mwwa_
not modelled 39.6 8 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:Hypothetical protein HI1388.1
40d1uiza_
not modelled 39.4 14 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
41c2xczA_
not modelled 39.0 18 PDB header:immune system
Chain: A: PDB Molecule:possible atls1-like light-inducible protein;
PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus
42c2ormA_
not modelled 38.1 16 PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase hp0924;
PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori.
43d2cpqa1
not modelled 37.8 37 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
44c3gacD_
not modelled 37.7 16 PDB header:cytokine
Chain: D: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: structure of mif with hpp
45c3mlcC_
not modelled 37.4 22 PDB header:isomerase
Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase;
PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate
46c3m20A_
not modelled 37.3 16 PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
47d1yh5a1
not modelled 37.2 13 Fold:YggU-like
Superfamily:YggU-like
Family:YggU-like
48c3mb2G_
not modelled 37.1 37 PDB header:isomerase
Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit;
PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily
49c2lfcA_
not modelled 36.8 35 PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase, flavoprotein subunit;
PDBTitle: solution nmr structure of fumarate reductase flavoprotein subunit from2 lactobacillus plantarum, northeast structural genomics consortium3 target lpr145j
50d1t0aa_
not modelled 36.4 18 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
51d1bjpa_
not modelled 36.1 24 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
52c3fwtA_
not modelled 36.1 15 PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: crystal structure of leishmania major mif2
53c3nzqB_
not modelled 35.8 20 PDB header:lyase
Chain: B: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600
54c3ry0A_
not modelled 35.8 36 PDB header:isomerase
Chain: A: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway
55d1dpta_
not modelled 34.3 10 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
56d1hfoa_
not modelled 34.2 17 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
57c2x4kB_
not modelled 33.8 16 PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa)
58d2fmra_
not modelled 33.3 44 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
59c3b64A_
not modelled 32.6 11 PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major
60c2rgoA_
not modelled 32.4 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
61c3nzpA_
not modelled 32.1 20 PDB header:lyase
Chain: A: PDB Molecule:arginine decarboxylase;
PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53
62d1gd0a_
not modelled 31.2 16 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
63d2gdga1
not modelled 31.1 19 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
64c2dt5A_
not modelled 30.1 12 PDB header:dna binding protein
Chain: A: PDB Molecule:at-rich dna-binding protein;
PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8
65d1fima_
not modelled 30.1 14 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
66c2v4iA_
not modelled 29.2 26 PDB header:transferase
Chain: A: PDB Molecule:glutamate n-acetyltransferase 2 alpha chain;
PDBTitle: structure of a novel n-acyl-enzyme intermediate of an n-2 terminal nucleophile (ntn) hydrolase, oat2
67c1d7kB_
not modelled 29.0 17 PDB header:lyase
Chain: B: PDB Molecule:human ornithine decarboxylase;
PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution
68d1nera_
not modelled 28.4 9 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
69d1w55a2
not modelled 28.3 13 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
70c3rr1B_
not modelled 28.3 27 PDB header:lyase
Chain: B: PDB Molecule:putative d-galactonate dehydratase;
PDBTitle: crystal structure of enolase prk14017 (target efi-500653) from2 ralstonia pickettii 12j
71d2dt5a1
not modelled 27.8 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional repressor Rex, N-terminal domain
72c2pmpA_
not modelled 26.2 17 PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from2 the isoprenoid biosynthetic pathway of arabidopsis thaliana
73d1d4ca3
not modelled 26.2 12 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
74d1iv3a_
not modelled 25.9 4 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
75d1y0pa3
not modelled 25.8 24 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
76d1vh8a_
not modelled 24.9 17 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
77c3f0gA_
not modelled 23.4 26 PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp
78c2os5C_
not modelled 23.3 12 PDB header:cytokine
Chain: C: PDB Molecule:acemif;
PDBTitle: macrophage migration inhibitory factor from ancylostoma ceylanicum
79d1d7ka2
not modelled 23.3 17 Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
80c3re3B_
not modelled 23.1 17 PDB header:lyase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from francisella tularensis
81d1gx1a_
not modelled 21.8 17 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
82d1up7a2
not modelled 20.6 13 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:AglA-like glucosidase
83c2on3A_
not modelled 20.2 19 PDB header:lyase
Chain: A: PDB Molecule:ornithine decarboxylase;
PDBTitle: a structural insight into the inhibition of human and2 leishmania donovani ornithine decarboxylases by 3-aminooxy-3 1-aminopropane
84c3b6nA_
not modelled 19.4 26 PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate
PDBTitle: crystal structure of 2c-methyl-d-erythritol 2,4-2 cyclodiphosphate synthase pv003920 from plasmodium vivax
85d1s6ya2
not modelled 19.4 22 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:AglA-like glucosidase
86c1m8pB_
not modelled 19.0 21 PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylyltransferase;
PDBTitle: crystal structure of p. chrysogenum atp sulfurylase in the t-state
87d2g0ta1
not modelled 18.8 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
88c3ketA_
not modelled 18.3 24 PDB header:transcription/dna
Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex;
PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator
89d7odca2
not modelled 17.4 20 Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
90d1f3ta2
not modelled 17.3 10 Fold:TIM beta/alpha-barrel
Superfamily:PLP-binding barrel
Family:Alanine racemase-like, N-terminal domain
91c3a1yF_
not modelled 16.1 28 PDB header:ribosomal protein
Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p);
PDBTitle: the structure of protein complex
92c3e0mB_
not modelled 15.9 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb
PDBTitle: crystal structure of fusion protein of msra and msrb
93d1l0oc_
not modelled 15.8 35 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
94c1l0oC_
not modelled 15.8 35 PDB header:protein binding
Chain: C: PDB Molecule:sigma factor;
PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf
95d1f80d_
not modelled 15.8 20 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
96c2hlhA_
not modelled 15.6 21 PDB header:transferase
Chain: A: PDB Molecule:nodulation fucosyltransferase;
PDBTitle: crystal structure of fucosyltransferase nodz from bradyrhizobium
97c2jxuA_
not modelled 15.4 39 PDB header:unknown function
Chain: A: PDB Molecule:terb;
PDBTitle: nmr solution structure of kp-terb, a tellurite resistance2 protein from klebsiella pneumoniae
98c3mt1B_
not modelled 15.3 19 PDB header:lyase
Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein;
PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti
99d2p3ra2
not modelled 14.2 25 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0