05/01/2012 22:55:18 : INFO  : Run start: Thu Jan  5 22:55:17 GMT 2012
05/01/2012 22:55:20 : INFO  : Initialised job
05/01/2012 22:55:21 : INFO  : Renaming log file 'phyre2_20120105_225517.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/5f0c987a4aa10aac/phyre_20120105_225517.log'
05/01/2012 22:55:22 : INFO  : Initialised job:
Sequence
>batch____
MRVDAIAKVTGRARYTDDYVMAGMCYAKYVRSPIAHGYAVSINDEQARSLPGVLAIFTWE
DVPDIPFATAGHAWTLDENKRDTADRALLTRHVRHHGDAVAIVVARDELTAEKAAQLVSI
EWQELPVITTPEAALAEDAAPIHNGGNLLKQSTMSTGNVQQTIDAADYQVQGHYQTPVIQ
HCHMESVTSLAWMEDDSRITIVSSTQIPHIVRRVVGQALDIPWSCVRVIKPFVGGGFGNK
QDVLEEPMAAFLTSKLGGIPVKVSLSREECFLATRTRHAFTIDGQMGVNRDGTLKGYSLD
VLSNTGAYASHGHSIASAGGNKVAYLYPRCAYAYSSKTCYTNLPSAGAMRGYGAPQVVFA
VESMLDDAATALGIDPVEIRLRNAAREGDANPLTGKRIYSAGLPECLEKGRKIFEWEKRR
AECQNQQGNLRRGVGVACFSYTSNTWPVGVEIAGARLLMNQDGTINVQSGATEIGQGADT
VFSQMVAETVGVPVSDVRVISTQDTDVTPFDPGAFASRQSYVAAPALRSAALLLKEKIIA
HAAVMLHQSAMNLTLIKGHIVLVERPEEPLMSLKDLAMDAFYHPERGGQLSAESSIKTTT
NPPAFGCTFVDLTVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEE
MIIDAKSGVVRNPNLLDYKMPTMPDLPQLESAFVEINEPQSAYGHKSLGEPPIIPVAAAI
RNAVKMATGVAINTLPLTPKRLYEEFHLAGLI

05/01/2012 22:55:22 : INFO  : Checked sequence
05/01/2012 22:55:23 : INFO  : Finding homologues with PSI-BLAST
05/01/2012 22:55:24 : INFO  : PSI-BLAST 3 iterations
05/01/2012 22:59:15 : INFO  : PSI-BLAST 5 iterations
05/01/2012 23:02:05 : INFO  : Finished PSI-BLAST
05/01/2012 23:02:06 : INFO  : Running Buildali to generate a3m file
05/01/2012 23:19:15 : INFO  : Converting to HMM
05/01/2012 23:19:24 : INFO  : Calibrating HMM
05/01/2012 23:19:48 : INFO  : Searching HMM database
05/01/2012 23:36:59 : INFO  : Finished buildali
05/01/2012 23:36:59 : INFO  : Predicting secondary structure
05/01/2012 23:37:03 : INFO  : Predicted secondary structure (PSI-Pred)
05/01/2012 23:37:05 : INFO  : Predicting Disordered regions
05/01/2012 23:37:07 : INFO  : Predicted Disorder (Disopred)
05/01/2012 23:37:08 : INFO  : Running memsat_svm check
05/01/2012 23:39:11 : INFO  : Running memsat_svm full
05/01/2012 23:49:29 : INFO  : Predicted Transmembrane (memsat_svm) ID '5f0c987a4aa10aac'
05/01/2012 23:49:29 : INFO  : Initialising fold library search
05/01/2012 23:49:31 : INFO  : Initialised search input
05/01/2012 23:49:32 : INFO  : Building Ensemble models
05/01/2012 23:49:34 : INFO  : Building hh.c1sb3D_.model.1.pdb
05/01/2012 23:49:42 : INFO  : Building hh.c1ffvB_.model.2.pdb
05/01/2012 23:49:48 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5f0c987a4aa10aac/hh.c1ffvB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5f0c987a4aa10aac/c1ffvB_.1.pdb
05/01/2012 23:49:50 : INFO  : Building hh.c1n62E_.model.3.pdb
05/01/2012 23:49:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5f0c987a4aa10aac/hh.c1n62E_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5f0c987a4aa10aac/c1n62E_.3.pdb
05/01/2012 23:50:00 : INFO  : Building hh.c1t3qB_.model.4.pdb
05/01/2012 23:50:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5f0c987a4aa10aac/hh.c1t3qB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5f0c987a4aa10aac/c1t3qB_.4.pdb
05/01/2012 23:50:09 : INFO  : Building hh.c2w54F_.model.5.pdb
05/01/2012 23:50:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5f0c987a4aa10aac/hh.c2w54F_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5f0c987a4aa10aac/c2w54F_.5.pdb
05/01/2012 23:50:17 : INFO  : Building hh.c1wygA_.model.6.pdb
05/01/2012 23:50:24 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5f0c987a4aa10aac/hh.c1wygA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5f0c987a4aa10aac/c1wygA_.6.pdb
05/01/2012 23:50:27 : INFO  : Building c1ffvB_.1.pdb
05/01/2012 23:50:35 : INFO  : Building c1sb3D_.2.pdb
05/01/2012 23:50:43 : INFO  : Building c1n62E_.3.pdb
05/01/2012 23:50:51 : INFO  : Building c1t3qB_.4.pdb
05/01/2012 23:51:01 : INFO  : Building c2w54F_.5.pdb
05/01/2012 23:51:13 : INFO  : Building c1wygA_.6.pdb
05/01/2012 23:51:24 : INFO  : Building c3eubL_.7.pdb
05/01/2012 23:51:36 : INFO  : Building c1vlbA_.8.pdb
05/01/2012 23:51:44 : INFO  : Building c1dgjA_.9.pdb
05/01/2012 23:51:52 : INFO  : Building d1rm6a2.10.pdb
05/01/2012 23:51:58 : INFO  : Building d1n62b2.11.pdb
05/01/2012 23:52:04 : INFO  : Building d1ffvb2.12.pdb
05/01/2012 23:52:10 : INFO  : Building d1jrob2.13.pdb
05/01/2012 23:52:17 : INFO  : Building d1t3qb2.14.pdb
05/01/2012 23:52:23 : INFO  : Building d1v97a5.15.pdb
05/01/2012 23:52:30 : INFO  : Building d1vlba4.16.pdb
05/01/2012 23:52:37 : INFO  : Building d1dgja4.17.pdb
05/01/2012 23:52:43 : INFO  : Building c3hrdE_.18.pdb
05/01/2012 23:52:49 : INFO  : Building c3hrdF_.19.pdb
05/01/2012 23:52:55 : INFO  : Building d1t3qb1.20.pdb
05/01/2012 23:54:37 : INFO  : Finished HH model building
05/01/2012 23:54:39 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
05/01/2012 23:55:37 : INFO  : html domain output complete ID '5f0c987a4aa10aac'
06/01/2012 08:25:12 : INFO  : Run end  : Fri Jan  6 08:25:11 GMT 2012
