Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	R	Y	L	G	P	K	L	K	L	S	R	R	E	G	T	D	L	F	L	K	S	G	V	R	A	I	D	T	K	C	K	I	E	Q	A	P	G	Q	H	G	A	R	K	P	R	L	S	D	Y	G	V	Q	L	R	E	K	Q	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?											?	?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	R	R	I	Y	G	V	L	E	R	Q	F	R	N	Y	Y	K	E	A	A	R	L	K	G	N	T	G	E	N	L	L	A	L	L	E	G	R	L	D	N	V	V	Y	R	M	G	F	G	A	T	R	A	E	A	R	Q	L	V	S	H
Secondary structure
SS confidence
Disorder																						?	?	?	?		?																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	A	I	M	V	N	G	R	V	V	N	I	A	S	Y	Q	V	S	P	N	D	V	V	S	I	R	E	K	A	K	K	Q	S	R	V	K	A	A	L	E	L	A	E	Q	R	E	K	P	T	W	L	E	V	D	A	G	K	M	E	G
Secondary structure
SS confidence
Disorder																												?				?									?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Sequence		T	F	K	R	K	P	E	R	S	D	L	S	A	D	I	N	E	H	L	I	V	E	L	Y	S	K
Secondary structure
SS confidence
Disorder																										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gy9 chain D domain 1 Region: 3 - 206 Aligned: 204 Modelled: 204 Confidence: 100.0% Identity: 100% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 PDB 2uub chain D domain 1 Region: 2 - 206 Aligned: 205 Modelled: 205 Confidence: 100.0% Identity: 48% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 PDB 3bbn chain D Region: 1 - 206 Aligned: 199 Modelled: 206 Confidence: 100.0% Identity: 38% PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Phyre2 PDB 1c06 chain A Region: 47 - 206 Aligned: 158 Modelled: 160 Confidence: 100.0% Identity: 54% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 PDB 2xzm chain D Region: 34 - 150 Aligned: 117 Modelled: 117 Confidence: 99.8% Identity: 26% PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Phyre2 PDB 1s1h chain D Region: 45 - 150 Aligned: 106 Modelled: 106 Confidence: 99.8% Identity: 22% PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Phyre2 PDB 3iz6 chain C Region: 93 - 149 Aligned: 57 Modelled: 57 Confidence: 99.6% Identity: 26% PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 2cqj chain A Region: 96 - 150 Aligned: 55 Modelled: 55 Confidence: 99.5% Identity: 22% PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog Phyre2 PDB 1dm9 chain A Region: 95 - 154 Aligned: 59 Modelled: 60 Confidence: 99.4% Identity: 27% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Heat shock protein 15 kD Phyre2 PDB 1dm9 chain A Region: 95 - 154 Aligned: 59 Modelled: 60 Confidence: 99.4% Identity: 27% PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd Phyre2 PDB 1p9k chain A Region: 95 - 148 Aligned: 54 Modelled: 54 Confidence: 99.3% Identity: 17% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: YbcJ-like Phyre2 PDB 2k6p chain A Region: 96 - 177 Aligned: 81 Modelled: 82 Confidence: 99.2% Identity: 19% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 Phyre2 PDB 1vio chain A domain 2 Region: 96 - 148 Aligned: 52 Modelled: 53 Confidence: 99.2% Identity: 27% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Pseudouridine synthase RsuA N-terminal domain Phyre2 PDB 3dh3 chain C Region: 96 - 190 Aligned: 81 Modelled: 95 Confidence: 99.0% Identity: 23% PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate Phyre2 PDB 1ksk chain A Region: 96 - 193 Aligned: 83 Modelled: 97 Confidence: 99.0% Identity: 19% PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua Phyre2 PDB 1vio chain A Region: 96 - 199 Aligned: 89 Modelled: 104 Confidence: 99.0% Identity: 20% PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Phyre2 PDB 3hp7 chain A Region: 97 - 149 Aligned: 53 Modelled: 53 Confidence: 98.9% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. Phyre2 PDB 1h3f chain A domain 2 Region: 95 - 151 Aligned: 57 Modelled: 57 Confidence: 97.8% Identity: 18% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain Phyre2 PDB 1h3e chain A Region: 98 - 151 Aligned: 54 Modelled: 54 Confidence: 97.7% Identity: 19% PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol Phyre2 PDB 1jh3 chain A Region: 95 - 141 Aligned: 47 Modelled: 47 Confidence: 97.6% Identity: 19% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain Phyre2 1 d2gy9d1 2 d2uubd1 3 c3bbnD_ 4 d1c06a_ 5 c2xzmD_ 6 c1s1hD_ 7 c3iz6C_ 8 c2cqjA_ 9 d1dm9a_ 10 c1dm9A_ 11 d1p9ka_ 12 c2k6pA_ 13 d1vioa2 14 c3dh3C_ 15 c1kskA_ 16 c1vioA_ 17 c3hp7A_ 18 d1h3fa2 19 c1h3eA_ 20 d1jh3a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2gy9d1 100.0 100 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 2 d2uubd1 100.0 48 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 3 c3bbnD_ 100.0 38 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 4 d1c06a_ 100.0 54 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 5 c2xzmD_ 99.8 26 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 6 c1s1hD_ 99.8 22 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 7 c3iz6C_ 99.6 26 PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 8 c2cqjA_ 99.5 22 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 9 d1dm9a_ 99.4 27 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 10 c1dm9A_ 99.4 27 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 11 d1p9ka_ 99.3 17 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 12 c2k6pA_ 99.2 19 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 13 d1vioa2 99.2 27 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 14 c3dh3C_ 99.0 23 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 15 c1kskA_ 99.0 19 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 16 c1vioA_ 99.0 20 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 17 c3hp7A_ 98.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 18 d1h3fa2 97.8 18 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 19 c1h3eA_ 97.7 19 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol 20 d1jh3a_ 97.6 19 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 21 c2janD_ not modelled 97.6 15 PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state 22 c3kbgA_ not modelled 96.5 21 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 23 c3iz6D_ not modelled 96.3 26 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 24 c2xzmW_ not modelled 96.0 21 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 25 c3izbD_ not modelled 95.8 19 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 26 d1kska3 not modelled 92.7 25 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 27 d2g1la1 not modelled 80.0 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 28 c2eh0A_ not modelled 78.4 21 PDB header:transport protein Chain: A: PDB Molecule:kinesin-like protein kif1b; PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b 29 c2jqlA_ not modelled 72.3 17 PDB header:cell cycle Chain: A: PDB Molecule:dna damage response protein kinase dun1; PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1 30 d1fm0d_ not modelled 70.7 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 31 c3fm8A_ not modelled 69.3 23 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 32 d1xo3a_ not modelled 69.0 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 33 c3rpfC_ not modelled 67.7 19 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 34 d1zud21 not modelled 67.6 22 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 35 c3hvzB_ not modelled 66.6 27 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 36 d1vjka_ not modelled 65.4 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 37 c2kmmA_ not modelled 64.2 32 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 38 c3po0A_ not modelled 64.2 12 PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii 39 c3dwmA_ not modelled 62.1 28 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 40 c2ktlA_ not modelled 62.0 18 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of c-terminal domain from mttyrrs of a. nidulans 41 c2qjlA_ not modelled 60.3 17 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 42 c3poaA_ not modelled 55.1 29 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 43 c1v8cA_ not modelled 54.8 20 PDB header:protein binding Chain: A: PDB Molecule:moad related protein; PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8 44 d1v8ca1 not modelled 53.4 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 45 d2cu3a1 not modelled 53.3 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 46 c2g1eA_ not modelled 53.2 19 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 47 d1gxca_ not modelled 53.0 19 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 48 c1gxcA_ not modelled 53.0 19 PDB header:phosphoprotein-binding domain Chain: A: PDB Molecule:serine/threonine-protein kinase chk2; PDBTitle: fha domain from human chk2 kinase in complex with a2 synthetic phosphopeptide 49 d1g3ga_ not modelled 51.4 26 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 50 d2piea1 not modelled 50.7 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 51 d1g6ga_ not modelled 50.4 22 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 52 c2k9xA_ not modelled 50.4 28 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 53 c2qieB_ not modelled 50.1 32 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 54 c3ixzA_ not modelled 50.0 18 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 55 d2affa1 not modelled 49.4 31 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 56 c3hx1B_ not modelled 49.1 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1951 protein; PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a 57 c1r21A_ not modelled 48.8 29 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 58 d1wgka_ not modelled 48.4 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 59 c3gqsB_ not modelled 48.3 31 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 60 d1tkea1 not modelled 47.9 32 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 61 c3j08A_ not modelled 47.7 21 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 62 d1wxqa2 not modelled 47.6 32 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 63 d1yjma1 not modelled 47.5 23 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 64 c3kt9A_ not modelled 47.3 13 PDB header:hydrolase Chain: A: PDB Molecule:aprataxin; PDBTitle: aprataxin fha domain 65 c3cwiA_ not modelled 47.1 26 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 66 c2zxeA_ not modelled 46.6 17 PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 67 c2l52A_ not modelled 46.5 19 PDB header:protein binding Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog; PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans 68 d2ff4a3 not modelled 46.1 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 69 d1tygb_ not modelled 45.6 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 70 d1wlna1 not modelled 44.8 8 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 71 c2hc8A_ not modelled 44.4 21 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 72 c3j09A_ not modelled 44.4 15 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 73 c1yj5C_ not modelled 44.1 20 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 74 d1lgpa_ not modelled 43.4 19 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 75 c3elsA_ not modelled 42.0 18 PDB header:splicing Chain: A: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: crystal structure of yeast pml1p, residues 51-204 76 c2kklA_ not modelled 41.6 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 77 c1mhsA_ not modelled 40.2 21 PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase 78 c2kl0A_ not modelled 38.8 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 79 c3b8eC_ not modelled 34.6 21 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 80 c3b8cB_ not modelled 34.1 21 PDB header:hydrolase Chain: B: PDB Molecule:atpase 2, plasma membrane-type; PDBTitle: crystal structure of a plasma membrane proton pump 81 d2r5yb1 not modelled 33.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 82 d1mzka_ not modelled 33.0 19 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 83 c2jkdB_ not modelled 32.8 24 PDB header:gene regulation Chain: B: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: structure of the yeast pml1 splicing factor and its2 integration into the res complex 84 c3b9bA_ not modelled 32.5 24 PDB header:hydrolase Chain: A: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: structure of the e2 beryllium fluoride complex of the serca2 ca2+-atpase 85 d1xnea_ not modelled 32.2 12 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 86 d1nyra2 not modelled 31.4 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 87 c2zagB_ not modelled 30.1 17 PDB header:transferase Chain: B: PDB Molecule:oligosaccharyl transferase stt3 subunit related protein; PDBTitle: crystal structure of the semet-substituted soluble domain of stt3 from2 p. furiosus 88 c3pp5A_ not modelled 28.8 23 PDB header:structural protein Chain: A: PDB Molecule:brk1; PDBTitle: high-resolution structure of the trimeric scar/wave complex precursor2 brk1 89 c1tygG_ not modelled 28.6 17 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 90 d1rwsa_ not modelled 26.6 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 91 d1dmza_ not modelled 26.4 13 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 92 c2ekiA_ not modelled 26.3 29 PDB header:signaling protein Chain: A: PDB Molecule:developmentally-regulated gtp-binding protein 1; PDBTitle: solution structures of the tgs domain of human2 developmentally-regulated gtp-binding protein 1 93 d1mnmc_ not modelled 26.1 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 94 c3rfuC_ not modelled 25.6 21 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 95 d1k61a_ not modelled 25.6 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 96 d1i6za_ not modelled 24.9 25 Fold:Spectrin repeat-like Superfamily:BAG domain Family:BAG domain 97 d1wh5a_ not modelled 23.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 98 c3p8cE_ not modelled 22.4 28 PDB header:protein binding Chain: E: PDB Molecule:probable protein brick1; PDBTitle: structure and control of the actin regulatory wave complex 99 d1qu5a_ not modelled 21.9 14 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 100 d1x2na1 not modelled 21.4 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0