PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1s1hD_

Fold library id	PDB Header	Molecule	Title
c1s1hD_	PDB header: ribosome	Chain: D: PDB Molecule: 40s ribosomal protein s9-a;	PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.

Links to external resources
Added to library: Tue Mar 16 12:25:52 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y E S S R L D A E L K L A G E F G L K N K K E I Y R I S F Q L S K I R R A A R D L L T R D E K D P K R L F E G N A L I R R L V R V G V L S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T S
S S S
S S
S S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D K K K L D Y V L A L K V E D F L E R R L Q T Q V Y K L G L A K S V H H A R V L I T Q R H I A V G K Q I V N I P S F M V R L D S E K H I D F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S S S S S G G G B T S S S S T
B T T
T T
B
T T
B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . .

Sequence A P T S P F G G A R P G R V A R R N A A R K A E A S G E A A D E A D E A D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T T T T
T T T T T T
S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	E	S	S	R	L	D	A	E	L	K	L	A	G	E	F	G	L	K	N	K	K	E	I	Y	R	I	S	F	Q	L	S	K	I	R	R	A	A	R	D	L	L	T	R	D	E	K	D	P	K	R	L	F	E	G	N	A	L	I	R	R	L	V	R	V	G	V	L	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S										T	S				S	S	S							S	S		S	S	S																							T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	K	K	K	L	D	Y	V	L	A	L	K	V	E	D	F	L	E	R	R	L	Q	T	Q	V	Y	K	L	G	L	A	K	S	V	H	H	A	R	V	L	I	T	Q	R	H	I	A	V	G	K	Q	I	V	N	I	P	S	F	M	V	R	L	D	S	E	K	H	I	D	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S									S	S	S	S	S	G	G	G	B									T	S	S	S	S											T		B			T	T						T	T		B			T	T					B		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Sequence	A	P	T	S	P	F	G	G	A	R	P	G	R	V	A	R	R	N	A	A	R	K	A	E	A	S	G	E	A	A	D	E	A	D	E	A	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				T	T	T	T	T	T	T					T	T					T	T	T	T						S				T	T	T