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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3b8cB_

Fold library idPDB HeaderMoleculeTitle
c3b8cB_PDB header: hydrolaseChain: B: PDB Molecule: atpase 2, plasma membrane-type;PDBTitle: crystal structure of a plasma membrane proton pump


Added to library: Tue Mar 16 13:47:23 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VDLEKIPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEMAAIMAI
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Known secondary structure (DSSP)


SSSSTT

TTTSSS
SS
STSSS

S

TTTT


TTSSTTS


GGGSSGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence ALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPG
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Known secondary structure (DSSP) GSS

TTS
S

TTTTTTTTTTTTTTTTTTTTTTS
S






SS
S



TTTT
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence DIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFG
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Known secondary structure (DSSP) SB



SS


SS
B



SS
B




STT

SS


BSS

B

S




S




B

S
TTSSSST
 .........220.........230.........240.........250.........260.........270.........280
Sequence KAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPT
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Known secondary structure (DSSP) T


S

S
S

STTTTTTSTTTTTTT
S
STTTTTT

SSTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence VLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLF
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Known secondary structure (DSSP) TTTTTTSB

SSGGGTT








S






S



SS
SSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence AAMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILE
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Known secondary structure (DSSP)

SSS

STT

TT



SS

B





TTT




BB
SSSS
B
B



SGGGTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence LAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGLLPLFDPPRHDSAETIRRAL
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Known secondary structure (DSSP) SS


STTTTTTTTT


B


SSSSS













 .........500.........510.........520.........530.........540.........550.........560
Sequence NLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYE
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Known secondary structure (DSSP) TT


SS
TTTT
TT

SSSSS

BGGGGTTS

S
TS




 .........570.........580.........590.........600.........610.........620.........630
Sequence IVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQR
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Known secondary structure (DSSP) TT



B


SSTTSSS



SSSGGG
SS
BSS
STT
 .........640.........650.........660.........670.........680.........690.........700
Sequence MKNYTIYAVSITIRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFA
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Known secondary structure (DSSP) TTTTTSTTSS
SS
S
TTT









SS


STTTTTTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence TGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSRSWSFVE
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Known secondary structure (DSSP) TSSTTTSSS
TTTTTTTT



SS

GGGTTTTTTTTSSTTGGGTT
SSS
TTTSTT
 .........780.........790.........800.........810.........820.........830...
Sequence RPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYI
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Known secondary structure (DSSP) STTTTTSGGGSSTTTTTTSSSSS



SS




TTTTTGGGTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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