Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ7DFV4
DateThu Jan 5 12:37:42 GMT 2012
Unique Job ID52f1e2d26e92ba7a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2qo3A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:eryaii erythromycin polyketide synthase modules 3 and 4;
PDBTitle: crystal structure of [ks3][at3] didomain from module 3 of 6-2 deoxyerthronolide b synthase
Confidence and coverage
Confidence: 99.9% Coverage: 98%
105 residues ( 98% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MEDGVQAMRDYLAGLDIASPEHQVLMNVTAKSEVAPSIIKENLSLHLTHTVKWTESLDTF
Secondary structure 
























SS confidence 



























































Disorder  ?


























































Disorder confidence 



























































 
   .........70.........80.........90.........100.......
Sequence  LNMPTPVAFLEISNKPYLGNMLNDFAGVDQQRVMHCRKAFSDAKVFK
Secondary structure 








SS confidence 














































Disorder 



























???
??????????
????
Disorder confidence 














































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2qo3 chain A

3D model

Region: 1 - 106
Aligned: 105
Modelled: 106
Confidence: 99.9%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:eryaii erythromycin polyketide synthase modules 3 and 4;
PDBTitle: crystal structure of [ks3][at3] didomain from module 3 of 6-2 deoxyerthronolide b synthase

Phyre2

PDB 3een chain A

3D model

Region: 1 - 103
Aligned: 102
Modelled: 103
Confidence: 99.9%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acp transacylase;
PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (fabd), xoo0880, from xanthomonas oryzae pv. oryzae kacc10331

Phyre2

PDB 1nm2 chain A domain 1

3D model

Region: 1 - 106
Aligned: 105
Modelled: 106
Confidence: 99.9%
Identity: 14%
Fold: FabD/lysophospholipase-like
Superfamily: FabD/lysophospholipase-like
Family: FabD-like

Phyre2

PDB 2qj3 chain B

3D model

Region: 1 - 106
Aligned: 105
Modelled: 106
Confidence: 99.9%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: mycobacterium tuberculosis fabd

Phyre2

PDB 3im9 chain A

3D model

Region: 1 - 103
Aligned: 102
Modelled: 103
Confidence: 99.9%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of mcat from staphylococcus aureus

Phyre2

PDB 3ezo chain A

3D model

Region: 1 - 87
Aligned: 86
Modelled: 87
Confidence: 99.9%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of acyl-carrier-protein s-2 malonyltransferase from burkholderia pseudomallei 1710b

Phyre2

PDB 1mla chain A domain 1

3D model

Region: 1 - 88
Aligned: 87
Modelled: 88
Confidence: 99.9%
Identity: 21%
Fold: FabD/lysophospholipase-like
Superfamily: FabD/lysophospholipase-like
Family: FabD-like

Phyre2

PDB 2hg4 chain A

3D model

Region: 1 - 106
Aligned: 105
Modelled: 106
Confidence: 99.9%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:6-deoxyerythronolide b synthase;
PDBTitle: structure of the ketosynthase-acyltransferase didomain of module 52 from debs.

Phyre2

PDB 2cuy chain A

3D model

Region: 1 - 103
Aligned: 102
Modelled: 103
Confidence: 99.9%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-[acyl carrier protein] transacylase;
PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from thermus thermophilus hb8

Phyre2

PDB 3rgi chain A

3D model

Region: 1 - 87
Aligned: 85
Modelled: 87
Confidence: 99.9%
Identity: 25%
PDB header:transferase
Chain: A: PDB Molecule:disd protein;
PDBTitle: trans-acting transferase from disorazole synthase

Phyre2

PDB 2cdh chain 9

3D model

Region: 1 - 88
Aligned: 87
Modelled: 88
Confidence: 99.9%
Identity: 16%
PDB header:transferase
Chain: 9: PDB Molecule:acetyl transferase;
PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution.

Phyre2

PDB 3qat chain B

3D model

Region: 1 - 98
Aligned: 97
Modelled: 98
Confidence: 99.9%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of acyl-carrier-protein-s-malonyltransferase from2 bartonella henselae

Phyre2

PDB 2g2o chain A

3D model

Region: 1 - 88
Aligned: 87
Modelled: 88
Confidence: 99.9%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: structure of e.coli fabd complexed with sulfate

Phyre2

PDB 2c2n chain A

3D model

Region: 1 - 95
Aligned: 94
Modelled: 95
Confidence: 99.9%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: structure of human mitochondrial malonyltransferase

Phyre2

PDB 3ptw chain A

3D model

Region: 1 - 103
Aligned: 102
Modelled: 103
Confidence: 99.9%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from clostridium perfringens atcc 13124

Phyre2

PDB 3tqe chain A

3D model

Region: 1 - 103
Aligned: 102
Modelled: 102
Confidence: 99.9%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:malonyl-coa-[acyl-carrier-protein] transacylase;
PDBTitle: structure of the malonyl coa-acyl carrier protein transacylase (fabd)2 from coxiella burnetii

Phyre2

PDB 2h1y chain A

3D model

Region: 1 - 106
Aligned: 103
Modelled: 106
Confidence: 99.9%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:malonyl coenzyme a-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (mcat) from helicobacter pylori

Phyre2

PDB 3im8 chain A

3D model

Region: 1 - 86
Aligned: 84
Modelled: 86
Confidence: 99.8%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:malonyl acyl carrier protein transacylase;
PDBTitle: crystal structure of mcat from streptococcus pneumoniae

Phyre2

PDB 3g87 chain A

3D model

Region: 1 - 88
Aligned: 87
Modelled: 88
Confidence: 99.8%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from burkholderia pseudomallei using dried seaweed as nucleant or3 protease

Phyre2

PDB 2jfk chain D

3D model

Region: 1 - 103
Aligned: 100
Modelled: 103
Confidence: 99.8%
Identity: 17%
PDB header:transferase
Chain: D: PDB Molecule:fatty acid synthase;
PDBTitle: structure of the mat domain of human fas with malonyl-coa

Phyre2
1

c2qo3A_
2

c3eenA_
3

d1nm2a1
4

c2qj3B_
5

c3im9A_
6

c3ezoA_
7

d1mlaa1
8

c2hg4A_
9

c2cuyA_
10

c3rgiA_
11

c2cdh9_
12

c3qatB_
13

c2g2oA_
14

c2c2nA_
15

c3ptwA_
16

c3tqeA_
17

c2h1yA_
18

c3im8A_
19

c3g87A_
20

c2jfkD_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qo3A_



99.9 15 PDB header:transferase
Chain: A: PDB Molecule:eryaii erythromycin polyketide synthase modules 3 and 4;
PDBTitle: crystal structure of [ks3][at3] didomain from module 3 of 6-2 deoxyerthronolide b synthase
2c3eenA_



99.9 20 PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acp transacylase;
PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (fabd), xoo0880, from xanthomonas oryzae pv. oryzae kacc10331
3d1nm2a1



99.9 14 Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:FabD-like
4c2qj3B_



99.9 16 PDB header:transferase
Chain: B: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: mycobacterium tuberculosis fabd
5c3im9A_



99.9 17 PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of mcat from staphylococcus aureus
6c3ezoA_



99.9 22 PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of acyl-carrier-protein s-2 malonyltransferase from burkholderia pseudomallei 1710b
7d1mlaa1



99.9 21 Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:FabD-like
8c2hg4A_



99.9 18 PDB header:transferase
Chain: A: PDB Molecule:6-deoxyerythronolide b synthase;
PDBTitle: structure of the ketosynthase-acyltransferase didomain of module 52 from debs.
9c2cuyA_



99.9 23 PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-[acyl carrier protein] transacylase;
PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from thermus thermophilus hb8
10c3rgiA_



99.9 25 PDB header:transferase
Chain: A: PDB Molecule:disd protein;
PDBTitle: trans-acting transferase from disorazole synthase
11c2cdh9_



99.9 16 PDB header:transferase
Chain: 9: PDB Molecule:acetyl transferase;
PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution.
12c3qatB_



99.9 19 PDB header:transferase
Chain: B: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of acyl-carrier-protein-s-malonyltransferase from2 bartonella henselae
13c2g2oA_



99.9 21 PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: structure of e.coli fabd complexed with sulfate
14c2c2nA_



99.9 23 PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: structure of human mitochondrial malonyltransferase
15c3ptwA_



99.9 15 PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from clostridium perfringens atcc 13124
16c3tqeA_



99.9 18 PDB header:transferase
Chain: A: PDB Molecule:malonyl-coa-[acyl-carrier-protein] transacylase;
PDBTitle: structure of the malonyl coa-acyl carrier protein transacylase (fabd)2 from coxiella burnetii
17c2h1yA_



99.9 17 PDB header:transferase
Chain: A: PDB Molecule:malonyl coenzyme a-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (mcat) from helicobacter pylori
18c3im8A_



99.8 18 PDB header:transferase
Chain: A: PDB Molecule:malonyl acyl carrier protein transacylase;
PDBTitle: crystal structure of mcat from streptococcus pneumoniae
19c3g87A_



99.8 23 PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from burkholderia pseudomallei using dried seaweed as nucleant or3 protease
20c2jfkD_



99.8 17 PDB header:transferase
Chain: D: PDB Molecule:fatty acid synthase;
PDBTitle: structure of the mat domain of human fas with malonyl-coa
21c3hhdC_



not modelled 99.8 17 PDB header:transferase, hydrolase
Chain: C: PDB Molecule:fatty acid synthase;
PDBTitle: structure of the human fatty acid synthase ks-mat didomain2 as a framework for inhibitor design.
22c2vz8B_



not modelled 99.7 16 PDB header:transferase
Chain: B: PDB Molecule:fatty acid synthase;
PDBTitle: crystal structure of mammalian fatty acid synthase
23c2uv9B_



not modelled 99.0 17 PDB header:transferase
Chain: B: PDB Molecule:fatty acid synthase alpha subunits;
PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the alpha subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400
24c2uv8C_



not modelled 98.7 27 PDB header:transferase
Chain: C: PDB Molecule:fatty acid synthase subunit alpha (fas2);
PDBTitle: crystal structure of yeast fatty acid synthase with stalled2 acyl carrier protein at 3.1 angstrom resolution
25c2vkzC_



not modelled 98.7 27 PDB header:transferase
Chain: C: PDB Molecule:fatty acid synthase subunit alpha;
PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex
26c2vkzH_



not modelled 97.8 15 PDB header:transferase
Chain: H: PDB Molecule:fatty acid synthase subunit beta;
PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex
27c2uvaI_



not modelled 97.4 14 PDB header:transferase
Chain: I: PDB Molecule:fatty acid synthase beta subunits;
PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400
28c2xznC_



not modelled 68.4 10 PDB header:ribosome
Chain: C: PDB Molecule:kh domain containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
29c2zkqc_



not modelled 67.1 9 PDB header:ribosomal protein/rna
Chain: C: PDB Molecule:rna expansion segment es4;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
30c1s1hC_



not modelled 59.7 5 PDB header:ribosome
Chain: C: PDB Molecule:40s ribosomal protein s3;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.
31c3izbB_



not modelled 53.4 5 PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein rps3 (s3p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
32c3iraA_



not modelled 52.2 32 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1
33c3ea0B_



not modelled 38.3 12 PDB header:hydrolase
Chain: B: PDB Molecule:atpase, para family;
PDBTitle: crystal structure of para family atpase from chlorobium tepidum tls
34c3fhkF_



not modelled 23.8 27 PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:upf0403 protein yphp;
PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide2 isomerase
35c1x0uB_



not modelled 13.7 10 PDB header:lyase
Chain: B: PDB Molecule:hypothetical methylmalonyl-coa decarboxylase alpha subunit;
PDBTitle: crystal structure of the carboxyl transferase subunit of putative pcc2 of sulfolobus tokodaii
36c3u9rB_



not modelled 12.8 9 PDB header:ligase
Chain: B: PDB Molecule:methylcrotonyl-coa carboxylase, beta-subunit;
PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc), beta subunit
37c2p4gA_



not modelled 11.3 8 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a pyrimidine reductase-like protein (dip1392)2 from corynebacterium diphtheriae nctc at 2.30 a resolution
38d2qalc2



not modelled 9.7 13 Fold:Ribosomal protein S3 C-terminal domain
Superfamily:Ribosomal protein S3 C-terminal domain
Family:Ribosomal protein S3 C-terminal domain
39c1hnwC_



not modelled 9.6 9 PDB header:ribosome
Chain: C: PDB Molecule:30s ribosomal protein s3;
PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 in complex with tetracycline
40c1pnxC_



not modelled 9.6 9 PDB header:ribosome
Chain: C: PDB Molecule:30s ribosomal protein s3;
PDBTitle: crystal structure of the wild type ribosome from e. coli,2 30s subunit of 70s ribosome. this file, 1pnx, contains3 only molecules of the 30s ribosomal subunit. the 50s4 subunit is in the pdb file 1pny.
41d2uubc2



not modelled 8.7 0 Fold:Ribosomal protein S3 C-terminal domain
Superfamily:Ribosomal protein S3 C-terminal domain
Family:Ribosomal protein S3 C-terminal domain
42c3n6rF_



not modelled 8.7 10 PDB header:ligase
Chain: F: PDB Molecule:propionyl-coa carboxylase, beta subunit;
PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc)
43d1szaa_



not modelled 8.2 13 Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:RPR domain (SMART 00582 )
44d1oc4a2



not modelled 7.3 10 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
45d1h05a_



not modelled 7.3 46 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
46d1xb4a2



not modelled 6.8 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
47c3uzuA_



not modelled 6.7 8 PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei
48c2gy9C_



not modelled 6.6 13 PDB header:ribosome
Chain: C: PDB Molecule:30s ribosomal subunit protein s3;
PDBTitle: structure of the 30s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056
49c2qbfC_



not modelled 6.6 13 PDB header:ribosome
Chain: C: PDB Molecule:30s ribosomal protein s3;
PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with ribosome recycling factor (rrf). this3 file contains the 30s subunit of the second 70s ribosome.4 the entire crystal structure contains two 70s ribosomes and5 is described in remark 400.
50d1ez4a2



not modelled 6.6 13 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
51d1zkda1



not modelled 6.4 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:RPA4359-like
52c1c4kA_



not modelled 6.3 9 PDB header:lyase
Chain: A: PDB Molecule:protein (ornithine decarboxylase);
PDBTitle: ornithine decarboxylase mutant (gly121tyr)
53c1i4wA_



not modelled 6.2 15 PDB header:transcription
Chain: A: PDB Molecule:mitochondrial replication protein mtf1;
PDBTitle: the crystal structure of the transcription factor sc-mttfb2 offers intriguing insights into mitochondrial transcription
54d1i4wa_



not modelled 6.2 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
55c3n8kG_



not modelled 6.1 44 PDB header:lyase
Chain: G: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid
56c2vycA_



not modelled 5.8 9 PDB header:lyase
Chain: A: PDB Molecule:biodegradative arginine decarboxylase;
PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
57c2d5nB_



not modelled 5.6 9 PDB header:hydrolase, oxidoreductase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis
58c3fteA_



not modelled 5.6 12 PDB header:transferase/rna
Chain: A: PDB Molecule:dimethyladenosine transferase;
PDBTitle: crystal structure of a. aeolicus ksga in complex with rna
59d1o6za2



not modelled 5.5 17 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
60c3d9oB_



not modelled 5.5 11 PDB header:transcription
Chain: B: PDB Molecule:rna-binding protein 16;
PDBTitle: snapshots of the rna processing factor scaf8 bound to different2 phosphorylated forms of the carboxy-terminal domain of rna-polymerase3 ii
61c2uygF_



not modelled 5.4 29 PDB header:lyase
Chain: F: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: crystallogaphic structure of the typeii 3-dehydroquinase2 from thermus thermophilus
62d2c4va1



not modelled 5.4 29 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
63c2xigA_



not modelled 5.0 14 PDB header:transcription
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0