Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP75750
DateThu Jan 5 12:13:48 GMT 2012
Unique Job ID482b3579979cf7c6

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3rfzB_
Top template information
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
Confidence and coverage
Confidence:100.0% Coverage: 92%
752 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNIYRLSFVSCLVMAMPCAMAVEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVN
Secondary structure 
SS confidence 
Disorder  ?????
????
?????????
??
?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  NNKISNGQKINWQKKGDKTIPCINDSLVDKFGLKPDIRQSLPQIDRCIDFSSRPEMLFNF
Secondary structure 
SS confidence 
Disorder 
?
?
??
???
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  DQANQQLNISIPQAWLAWHSENWAPPSTWKEGVAGVLMDYNLFASSYRPQDGSSSTNLNA
Secondary structure 
SS confidence 
Disorder 
?????????
????
?
?????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  YGTAGINAGAWRLRSDYQLNKTDSEDNHDQSGGISRTYLFRPLPQLGSKLTLGETDFSSN
Secondary structure 
SS confidence 
Disorder 
??
??????????
??
?
????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  IFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTISQSGRVIYQKKVPPGPFI
Secondary structure 
SS confidence 
Disorder  ????
?
????????????
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  IDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSHQTE
Secondary structure 
SS confidence 
Disorder 
?
?
???
??????????
???????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  NETFFSNEVSWGMLSNTSLYGGLLISDDDYHSAAMGIGQNMLWLGALSFDVTWASSHFDT
Secondary structure 
SS confidence 
Disorder 
?
?
?????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  QQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLDHKYNDSDAQDEKQTIS
Secondary structure 
SS confidence 
Disorder  ??????
????
?
?
?
?
?????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  LSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGDWRDISISTSFNTTHYE
Secondary structure 
SS confidence 
Disorder 
?
???????????
?
???
????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  DKDRDNQIYLSISLPFGNGGRVGYDMQNSSHSTIHRMSWNDTLDERNSWGMSAGLQSDRP
Secondary structure 
SS confidence 
Disorder  ?????
???
??????
????
???
?????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  DNGAQVSGNYQHLSSAGEWDISGTYAASDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPR
Secondary structure 
SS confidence 
Disorder  ????
?????
??????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  LMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVIKET
Secondary structure 
SS confidence 
Disorder 
?
?????
?????
?
???
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  WIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGV
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........790.........800.........810.....
Sequence  AENQLFTVVWGEQSCIIHLPERLEDTTKRLILPCH
Secondary structure 
SS confidence 
Disorder 
???
?????????
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3rfz chain B

3D model

Region: 46 - 814
Aligned: 752
Modelled: 769
Confidence: 100.0%
Identity: 29%
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate

Phyre2

PDB 2vqi chain A

3D model

Region: 156 - 644
Aligned: 472
Modelled: 489
Confidence: 100.0%
Identity: 36%
PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore

Phyre2

PDB 3ohn chain A

3D model

Region: 155 - 641
Aligned: 462
Modelled: 487
Confidence: 100.0%
Identity: 31%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain

Phyre2

PDB 1zdv chain A domain 1

3D model

Region: 45 - 155
Aligned: 111
Modelled: 111
Confidence: 99.9%
Identity: 22%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3bwu chain D domain 1

3D model

Region: 23 - 138
Aligned: 116
Modelled: 116
Confidence: 99.9%
Identity: 22%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3fcg chain B

3D model

Region: 260 - 334
Aligned: 70
Modelled: 75
Confidence: 99.9%
Identity: 33%
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher

Phyre2

PDB 1zdx chain A domain 1

3D model

Region: 45 - 141
Aligned: 97
Modelled: 97
Confidence: 99.9%
Identity: 21%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3l48 chain B

3D model

Region: 736 - 814
Aligned: 77
Modelled: 79
Confidence: 99.7%
Identity: 40%
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher

Phyre2

PDB 2xet chain B

3D model

Region: 738 - 814
Aligned: 77
Modelled: 77
Confidence: 99.7%
Identity: 22%
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly

Phyre2

PDB 1uwy chain A domain 1

3D model

Region: 739 - 789
Aligned: 49
Modelled: 51
Confidence: 91.4%
Identity: 8%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 2nsm chain A

3D model

Region: 739 - 809
Aligned: 69
Modelled: 71
Confidence: 85.7%
Identity: 9%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain

Phyre2

PDB 1uwy chain A

3D model

Region: 737 - 789
Aligned: 52
Modelled: 53
Confidence: 85.5%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m

Phyre2

PDB 3pe9 chain B

3D model

Region: 267 - 334
Aligned: 66
Modelled: 68
Confidence: 84.1%
Identity: 15%
PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 3mn8 chain A

3D model

Region: 739 - 789
Aligned: 50
Modelled: 51
Confidence: 84.0%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short

Phyre2

PDB 3pdg chain A

3D model

Region: 269 - 337
Aligned: 68
Modelled: 69
Confidence: 79.9%
Identity: 15%
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 1d2p chain A

3D model

Region: 272 - 329
Aligned: 58
Modelled: 58
Confidence: 77.3%
Identity: 16%
PDB header:structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus

Phyre2

PDB 1u00 chain A

3D model

Region: 275 - 328
Aligned: 54
Modelled: 54
Confidence: 74.6%
Identity: 20%
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc

Phyre2

PDB 1h8l chain A

3D model

Region: 737 - 809
Aligned: 71
Modelled: 73
Confidence: 74.4%
Identity: 15%
PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa

Phyre2

PDB 1h8l chain A domain 1

3D model

Region: 739 - 810
Aligned: 70
Modelled: 72
Confidence: 74.0%
Identity: 16%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 1w0n chain A

3D model

Region: 244 - 322
Aligned: 79
Modelled: 79
Confidence: 73.7%
Identity: 14%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: Family 36 carbohydrate binding module, CBM36

Phyre2
1
c3rfzB_
2
c2vqiA_
3
c3ohnA_
4
d1zdva1
5
d3bwud1
6
c3fcgB_
7
d1zdxa1
8
c3l48B_
9
c2xetB_
10
d1uwya1
11
c2nsmA_
12
c1uwyA_
13
c3pe9B_
14
c3mn8A_
15
c3pdgA_
16
c1d2pA_
17
c1u00A_
18
c1h8lA_
19
d1h8la1
20
d1w0na_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
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97
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99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3rfzB_
100.0 29 PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
2c2vqiA_
100.0 36 PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore
3c3ohnA_
100.0 31 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain
4d1zdva1
99.9 22 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
5d3bwud1
99.9 22 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
6c3fcgB_
99.9 33 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
7d1zdxa1
99.9 21 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
8c3l48B_
99.7 40 PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
9c2xetB_
99.7 22 PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
10d1uwya1
91.4 8 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
11c2nsmA_
85.7 9 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
12c1uwyA_
85.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
13c3pe9B_
84.1 15 PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
14c3mn8A_
84.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
15c3pdgA_
79.9 15 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
16c1d2pA_
77.3 16 PDB header:structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus
17c1u00A_
74.6 20 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
18c1h8lA_
74.4 15 PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
19d1h8la1
74.0 16 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
20d1w0na_
73.7 14 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 36 carbohydrate binding module, CBM36
21c3dpqE_
not modelled 73.5 24 PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
22c3pe9D_
not modelled 72.3 14 PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
23c2op6A_
not modelled 71.6 17 PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
24c1bprA_
not modelled 71.2 24 PDB header:molecular chaperone
Chain: A: PDB Molecule:dnak;
PDBTitle: nmr structure of the substrate binding domain of dnak,2 minimized average structure
25c3n8eA_
not modelled 71.1 20 PDB header:chaperone
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: substrate binding domain of the human heat shock 70kda protein 92 (mortalin)
26c3d33B_
not modelled 64.8 19 PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution
27c2x5pA_
not modelled 64.3 19 PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
28d1u00a2
not modelled 63.6 21 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
29c3pe9A_
not modelled 63.0 16 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
30c3pe9C_
not modelled 63.0 16 PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
31d1v8ha1
not modelled 61.8 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SoxZ-like
32d1yuwa1
not modelled 59.5 19 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
33c3dqgC_
not modelled 59.0 24 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
34c2r32A_
not modelled 50.9 23 PDB header:immune system
Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand
PDBTitle: crystal structure of human gitrl variant
35d1dkza2
not modelled 50.9 23 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
36d2ag4a1
not modelled 49.8 11 Fold:Ganglioside M2 (gm2) activator
Superfamily:Ganglioside M2 (gm2) activator
Family:Ganglioside M2 (gm2) activator
37c3bryB_
not modelled 46.7 12 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
38c2oxgE_
not modelled 40.7 19 PDB header:transport protein
Chain: E: PDB Molecule:soxz protein;
PDBTitle: the soxyz complex of paracoccus pantotrophus
39c3k1dA_
not modelled 39.6 15 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
40d1ci3m2
not modelled 29.9 24 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
41d2burb1
not modelled 29.2 18 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
42c2xk0A_
not modelled 26.9 15 PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
43c3c12A_
not modelled 26.2 20 PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
44d2vmha1
not modelled 23.9 7 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:NPCBM-like
45d2dj4a1
not modelled 23.8 40 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
46d2e9ia1
not modelled 22.6 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
47c3rghA_
not modelled 22.5 27 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens
48d2bp3a1
not modelled 21.5 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
49d2je8a4
not modelled 21.5 5 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
50c3hizB_
not modelled 21.5 15 PDB header:transferase/oncoprotein
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit
PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha
51d1wlha1
not modelled 21.3 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
52d3pcca_
not modelled 20.6 15 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
53c2ww8A_
not modelled 20.3 12 PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus adhesin (rrga) from streptococcus2 pneumoniae
54c3iswA_
not modelled 20.2 53 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
55c1nkgA_
not modelled 19.9 19 PDB header:lyase
Chain: A: PDB Molecule:rhamnogalacturonase b;
PDBTitle: rhamnogalacturonan lyase from aspergillus aculeatus
56d3pccm_
not modelled 19.9 14 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
57c2jxmB_
not modelled 18.7 24 PDB header:electron transport
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex
58d2dmca1
not modelled 18.4 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
59c3gxxB_
not modelled 17.8 12 PDB header:transcription
Chain: B: PDB Molecule:transcription elongation factor spt6;
PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b
60c2k78A_
not modelled 17.6 8 PDB header:heme-binding protein
Chain: A: PDB Molecule:iron-regulated surface determinant protein c;
PDBTitle: solution structure of the isdc neat domain bound to zinc2 protoporphyrin
61c3cmgA_
not modelled 17.6 11 PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
62c3b9eA_
not modelled 17.5 9 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
63d2j3sa2
not modelled 17.4 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
64d2d7oa1
not modelled 17.2 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
65d2o6pa1
not modelled 17.1 8 Fold:Immunoglobulin-like beta-sandwich
Superfamily:NEAT domain-like
Family:NEAT domain
66c3fn9B_
not modelled 17.1 12 PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
67d2je6i3
not modelled 16.8 25 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
68c2o6pA_
not modelled 16.6 8 PDB header:transport protein
Chain: A: PDB Molecule:iron-regulated surface determinant protein c;
PDBTitle: crystal structure of the heme-isdc complex
69c2boyC_
not modelled 16.4 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from2 rhodococcus opacus 1cp
70d2dica1
not modelled 16.3 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
71d2a9da1
not modelled 16.1 18 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Molybdenum-containing oxidoreductases-like dimerisation domain
72d1cwva1
not modelled 15.9 18 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
73c2brqB_
not modelled 15.9 53 PDB header:structural protein
Chain: B: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
74d2w0pa1
not modelled 15.9 53 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
75d2dmba1
not modelled 15.8 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
76c3dwoX_
not modelled 15.6 16 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
77c2jf1A_
not modelled 15.6 53 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide
78d2di8a1
not modelled 15.4 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
79c2e9jA_
not modelled 15.1 27 PDB header:structural protein
Chain: A: PDB Molecule:filamin-b;
PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b
80d1qfha2
not modelled 15.0 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
81d2ja9a2
not modelled 14.9 16 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
82d2d7ma1
not modelled 14.5 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
83d1v05a_
not modelled 14.4 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
84d1e2wa2
not modelled 14.4 15 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
85c2ds4A_
not modelled 14.4 33 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 45;
PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45
86d1qfha1
not modelled 14.3 40 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
87c2vnvC_
not modelled 14.2 8 PDB header:sugar-binding protein
Chain: C: PDB Molecule:bcla;
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution
88c3o82B_
not modelled 14.1 21 PDB header:ligase
Chain: B: PDB Molecule:peptide arylation enzyme;
PDBTitle: structure of base n-terminal domain from acinetobacter baumannii bound2 to 5'-o-[n-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine
89d2diaa1
not modelled 13.9 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
90d2diba1
not modelled 13.8 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
91c3cnkB_
not modelled 13.0 33 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the dimerization domain of human2 filamin a
92d1cxla1
not modelled 13.0 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
93c3brzA_
not modelled 12.9 12 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
94d2di9a1
not modelled 12.6 47 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
95c2w0pB_
not modelled 12.4 53 PDB header:cell adhesion
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the migfilin peptide
96c3iswB_
not modelled 12.4 53 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
97c2brqA_
not modelled 12.4 53 PDB header:structural protein
Chain: A: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
98d1lnza1
not modelled 12.3 21 Fold:Obg-fold
Superfamily:Obg GTP-binding protein N-terminal domain
Family:Obg GTP-binding protein N-terminal domain
99d1udxa1
not modelled 12.1 29 Fold:Obg-fold
Superfamily:Obg GTP-binding protein N-terminal domain
Family:Obg GTP-binding protein N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0