Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	Q	T	F	I	P	G	K	D	A	A	L	E	D	S	I	A	R	F	Q	Q	K	L	S	D	L	G	F	Q	I	E	E	A	S	W	L	N	P	V	P	N	V	W	S	V	H	I	R	D	K	E	C	A	L	C	F	T	N	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	G	A	T	K	K	A	A	L	A	S	A	L	G	E	Y	F	E	R	L	S	T	N	Y	F	F	A	D	F	W	L	G	E	T	I	A	N	G	P	F	V	H	Y	P	N	E	K	W	F	P	L	T	E	N	D	D	V	P	E	G
Secondary structure
SS confidence
Disorder																													?	?		?				?	?	?	?															?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	L	D	D	R	L	R	A	F	Y	D	P	E	N	E	L	T	G	S	M	L	I	D	L	Q	S	G	N	E	D	R	G	I	C	G	L	P	F	T	R	Q	S	D	N	Q	T	V	Y	I	P	M	N	I	I	G	N	L	Y	V	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		N	G	M	S	A	G	N	T	R	N	E	A	R	V	Q	G	L	S	E	V	F	E	R	Y	V	K	N	R	I	I	A	E	S	I	S	L	P	E	I	P	A	D	V	L	A	R	Y	P	A	V	V	E	A	I	E	T	L	E	A	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	F	P	I	F	A	Y	D	G	S	L	G	G	Q	Y	P	V	I	C	V	V	L	F	N	P	A	N	G	T	C	F	A	S	F	G	A	H	P	D	F	G	V	A	L	E	R	T	V	T	E	L	L	Q	G	R	G	L	K	D	L
Secondary structure
SS confidence
Disorder																																																								?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	V	F	T	P	P	T	F	D	D	E	E	V	A	E	H	T	N	L	E	T	H	F	I	D	S	S	G	L	I	S	W	D	L	F	K	Q	D	A	D	Y	P	F	V	D	W	N	F	S	G	T	T	E	E	E	F	A	T	L	M
Secondary structure
SS confidence
Disorder		?	?	?							?																		?	?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		A	I	F	N	K	E	D	K	E	V	Y	I	A	D	Y	E	H	L	G	V	Y	A	C	R	I	I	V	P	G	M	S	D	I	Y	P	A	E	D	L	W	L	A	N	N	S	M	G	S	H	L	R	E	T	I	L	S	L	P	G	S
Secondary structure
SS confidence
Disorder																																																									?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		E	W	E	K	E	D	Y	L	N	L	I	E	Q	L	D	E	E	G	F	D	D	F	T	R	V	R	E	L	L	G	L	A	T	G	S	D	N	G	W	Y	T	L	R	I	G	E	L	K	A	M	L	A	L	A	G	G	D	L	E	Q
Secondary structure
SS confidence
Disorder		?																?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		A	L	V	W	T	E	W	T	M	E	F	N	S	S	V	F	S	P	E	R	A	N	Y	Y	R	C	L	Q	T	L	L	L	L	A	Q	E	E	D	R	Q	P	L	Q	Y	L	N	A	F	V	R	M	Y	G	A	D	A	V	E	A	A
Secondary structure
SS confidence
Disorder																?																								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
Sequence		S	A	A	M	S	G	E	A	A	F	Y	G	L	Q	P	V	D	S	D	L	H	A	F	A	A	H	Q	S	L	L	K	A	Y	E	K	L	Q	R	A	K	A	A	F	W	A	K
Secondary structure
SS confidence
Disorder											?		?			?		?	?	?	?																							?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1sr9 chain A domain 3 Region: 230 - 292 Aligned: 63 Modelled: 63 Confidence: 60.5% Identity: 17% Fold: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Superfamily: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Family: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Phyre2 PDB 3bee chain B Region: 451 - 513 Aligned: 57 Modelled: 63 Confidence: 59.1% Identity: 14% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative yfre protein; PDBTitle: crystal structure of putative yfre protein from vibrio2 parahaemolyticus Phyre2 PDB 2hfv chain A Region: 356 - 388 Aligned: 33 Modelled: 33 Confidence: 45.9% Identity: 27% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90. Phyre2 PDB 2q5c chain A Region: 284 - 383 Aligned: 76 Modelled: 76 Confidence: 43.3% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum Phyre2 PDB 2hfv chain A domain 1 Region: 356 - 388 Aligned: 33 Modelled: 33 Confidence: 41.2% Identity: 27% Fold: Ferredoxin-like Superfamily: GlnB-like Family: RPA1041-like Phyre2 PDB 3pmd chain A Region: 402 - 437 Aligned: 34 Modelled: 36 Confidence: 32.9% Identity: 21% PDB header:lipid binding protein Chain: A: PDB Molecule:conserved domain protein; PDBTitle: crystal structure of the sporulation inhibitor pxo1-118 from bacillus2 anthracis Phyre2 PDB 1ewq chain A domain 4 Region: 356 - 389 Aligned: 34 Modelled: 34 Confidence: 29.6% Identity: 32% Fold: MutS N-terminal domain-like Superfamily: DNA repair protein MutS, domain I Family: DNA repair protein MutS, domain I Phyre2 PDB 2kat chain A Region: 430 - 529 Aligned: 78 Modelled: 100 Confidence: 29.3% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein bpp2914 from bordetella2 parapertussis. northeast structural genomics consortium3 target bpr206 Phyre2 PDB 2uub chain E domain 2 Region: 259 - 293 Aligned: 35 Modelled: 35 Confidence: 28.7% Identity: 17% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Ribosomal S5 protein, N-terminal domain Phyre2 PDB 1fch chain A Region: 450 - 530 Aligned: 76 Modelled: 81 Confidence: 27.5% Identity: 16% Fold: alpha-alpha superhelix Superfamily: TPR-like Family: Tetratricopeptide repeat (TPR) Phyre2 PDB 2e2e chain A Region: 451 - 520 Aligned: 64 Modelled: 70 Confidence: 25.1% Identity: 22% PDB header:lyase Chain: A: PDB Molecule:formate-dependent nitrite reductase complex nrfg subunit; PDBTitle: tpr domain of nrfg mediates the complex formation between heme lyase2 and formate-dependent nitrite reductase in escherichia coli o157:h7 Phyre2 PDB 1pkp chain A domain 2 Region: 259 - 293 Aligned: 35 Modelled: 35 Confidence: 24.9% Identity: 14% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Ribosomal S5 protein, N-terminal domain Phyre2 PDB 1yku chain B Region: 402 - 437 Aligned: 34 Modelled: 36 Confidence: 22.8% Identity: 18% PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein pxo2-61; PDBTitle: crystal structure of a sensor domain homolog Phyre2 PDB 2cp9 chain A domain 1 Region: 460 - 486 Aligned: 27 Modelled: 27 Confidence: 22.3% Identity: 33% Fold: RuvA C-terminal domain-like Superfamily: UBA-like Family: TS-N domain Phyre2 PDB 2id1 chain A domain 1 Region: 357 - 400 Aligned: 44 Modelled: 44 Confidence: 20.9% Identity: 20% Fold: Nucleotidyltransferase Superfamily: Nucleotidyltransferase Family: Iojap/YbeB-like Phyre2 PDB 1o98 chain A domain 1 Region: 3 - 37 Aligned: 35 Modelled: 35 Confidence: 20.4% Identity: 26% Fold: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Phyre2 PDB 2pju chain A domain 1 Region: 351 - 383 Aligned: 33 Modelled: 33 Confidence: 19.6% Identity: 18% Fold: Chelatase-like Superfamily: PrpR receptor domain-like Family: PrpR receptor domain-like Phyre2 PDB 1t4l chain B Region: 18 - 79 Aligned: 60 Modelled: 62 Confidence: 19.5% Identity: 15% Fold: dsRBD-like Superfamily: dsRNA-binding domain-like Family: Double-stranded RNA-binding domain (dsRBD) Phyre2 PDB 2zkq chain E Region: 259 - 293 Aligned: 35 Modelled: 35 Confidence: 19.4% Identity: 11% PDB header:ribosomal protein/rna Chain: E: PDB Molecule:rna expansion segment es6 part ii; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 2khx chain A Region: 42 - 80 Aligned: 37 Modelled: 39 Confidence: 19.1% Identity: 22% PDB header:gene regulation,nuclear protein Chain: A: PDB Molecule:ribonuclease 3; PDBTitle: drosha double-stranded rna binding motif Phyre2 1 d1sr9a3 2 c3beeB_ 3 c2hfvA_ 4 c2q5cA_ 5 d2hfva1 6 c3pmdA_ 7 d1ewqa4 8 c2katA_ 9 d2uube2 10 d1fcha_ 11 c2e2eA_ 12 d1pkpa2 13 c1ykuB_ 14 d2cp9a1 15 d2id1a1 16 d1o98a1 17 d2pjua1 18 d1t4lb_ 19 c2zkqe_ 20 c2khxA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1sr9a3 60.5 17 Fold:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Superfamily:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Family:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 2 c3beeB_ 59.1 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative yfre protein; PDBTitle: crystal structure of putative yfre protein from vibrio2 parahaemolyticus 3 c2hfvA_ 45.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90. 4 c2q5cA_ 43.3 21 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 5 d2hfva1 41.2 27 Fold:Ferredoxin-like Superfamily:GlnB-like Family:RPA1041-like 6 c3pmdA_ 32.9 21 PDB header:lipid binding protein Chain: A: PDB Molecule:conserved domain protein; PDBTitle: crystal structure of the sporulation inhibitor pxo1-118 from bacillus2 anthracis 7 d1ewqa4 29.6 32 Fold:MutS N-terminal domain-like Superfamily:DNA repair protein MutS, domain I Family:DNA repair protein MutS, domain I 8 c2katA_ 29.3 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein bpp2914 from bordetella2 parapertussis. northeast structural genomics consortium3 target bpr206 9 d2uube2 28.7 17 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 10 d1fcha_ 27.5 16 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 11 c2e2eA_ 25.1 22 PDB header:lyase Chain: A: PDB Molecule:formate-dependent nitrite reductase complex nrfg subunit; PDBTitle: tpr domain of nrfg mediates the complex formation between heme lyase2 and formate-dependent nitrite reductase in escherichia coli o157:h7 12 d1pkpa2 24.9 14 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 13 c1ykuB_ 22.8 18 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein pxo2-61; PDBTitle: crystal structure of a sensor domain homolog 14 d2cp9a1 22.3 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 15 d2id1a1 20.9 20 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Iojap/YbeB-like 16 d1o98a1 20.4 26 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 17 d2pjua1 19.6 18 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 18 d1t4lb_ 19.5 15 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 19 c2zkqe_ 19.4 11 PDB header:ribosomal protein/rna Chain: E: PDB Molecule:rna expansion segment es6 part ii; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 20 c2khxA_ 19.1 22 PDB header:gene regulation,nuclear protein Chain: A: PDB Molecule:ribonuclease 3; PDBTitle: drosha double-stranded rna binding motif 21 d2qale2 not modelled 18.7 11 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Ribosomal S5 protein, N-terminal domain 22 d1aipc1 not modelled 18.6 26 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 23 c2xzmE_ not modelled 18.5 14 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 24 d1efub3 not modelled 18.0 26 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 25 c2pjuD_ not modelled 17.7 18 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 26 d1xb2b1 not modelled 16.9 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 27 c1s1hE_ not modelled 16.6 14 PDB header:ribosome Chain: E: PDB Molecule:40s ribosomal protein s2; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 28 d1vk8a_ not modelled 15.9 14 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 29 d1lxja_ not modelled 15.7 7 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 30 c1t4oA_ not modelled 15.0 15 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of rnt1p dsrbd 31 d1t4oa_ not modelled 15.0 15 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 32 d2o5aa1 not modelled 14.3 20 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Iojap/YbeB-like 33 d1ekza_ not modelled 14.3 13 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 34 c2kckA_ not modelled 14.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tpr repeat; PDBTitle: nmr solution structure of the northeast structural genomics2 consortium (nesg) target mrr121a 35 c3urzB_ not modelled 14.0 19 PDB header:protein binding Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein (bacova_03105) from2 bacteroides ovatus atcc 8483 at 2.19 a resolution 36 d2iboa1 not modelled 14.0 9 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 37 d1yqha1 not modelled 13.8 18 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 38 c3pm7A_ not modelled 13.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of ef_3132 protein from enterococcus faecalis at the2 resolution 2a, northeast structural genomics consortium target efr184 39 d1zxoa1 not modelled 13.4 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 40 c3fflC_ not modelled 13.3 8 PDB header:cell cycle Chain: C: PDB Molecule:anaphase-promoting complex subunit 7; PDBTitle: crystal structure of the n-terminal domain of anaphase-2 promoting complex subunit 7 41 d1qu6a1 not modelled 13.1 18 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 42 c2pokB_ not modelled 13.0 11 PDB header:hydrolase Chain: B: PDB Molecule:peptidase, m20/m25/m40 family; PDBTitle: crystal structure of a m20 family metallo peptidase from streptococcus2 pneumoniae 43 d1qu6a2 not modelled 12.9 12 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 44 c3upsA_ not modelled 12.7 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:iojap-like protein; PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis 45 d1t0ba_ not modelled 12.5 10 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:ThuA-like 46 c3k9iA_ not modelled 11.9 12 PDB header:protein binding Chain: A: PDB Molecule:bh0479 protein; PDBTitle: crystal structure of putative protein binding protein (np_241345.1)2 from bacillus halodurans at 2.71 a resolution 47 c3c6cA_ not modelled 11.9 13 PDB header:hydrolase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution 48 d1g94a2 not modelled 11.8 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 49 c3lotC_ not modelled 11.8 19 PDB header:structure genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function (np_070038.1) from2 archaeoglobus fulgidus at 1.89 a resolution 50 d1ckqa_ not modelled 11.8 19 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRI 51 d2hr2a1 not modelled 11.7 17 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:CT2138-like 52 c3ramC_ not modelled 11.6 18 PDB header:hydrolase Chain: C: PDB Molecule:hmra protein; PDBTitle: crystal structure of hmra 53 c3chvA_ not modelled 11.4 13 PDB header:metal binding protein Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution 54 c1wr1B_ not modelled 11.4 38 PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin 55 c1y7eA_ not modelled 11.3 22 PDB header:hydrolase Chain: A: PDB Molecule:probable m18-family aminopeptidase 1; PDBTitle: the crystal structure of aminopeptidase i from borrelia burgdorferi2 b31 56 d1u9pa1 not modelled 11.1 14 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 57 c1bplA_ not modelled 11.0 20 PDB header:glycosyltransferase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: glycosyltransferase 58 c2dbaA_ not modelled 10.9 15 PDB header:structural protein Chain: A: PDB Molecule:smooth muscle cell associated protein-1, isoform PDBTitle: the solution structure of the tetratrico peptide repeat of2 human smooth muscle cell associated protein-1, isoform 2 59 c2x4bA_ not modelled 10.7 12 PDB header:hydrolase Chain: A: PDB Molecule:limit dextrinase; PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin 60 c1eg0B_ not modelled 10.5 15 PDB header:ribosome PDB COMPND: 61 d1hx0a2 not modelled 10.5 25 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 62 c1p6gE_ not modelled 10.5 11 PDB header:ribosome Chain: E: PDB Molecule:30s ribosomal protein s5; PDBTitle: real space refined coordinates of the 30s subunit fitted2 into the low resolution cryo-em map of the ef-g.gtp state3 of e. coli 70s ribosome 63 c1o0wB_ not modelled 10.4 23 PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of ribonuclease iii (tm1102) from2 thermotoga maritima at 2.0 a resolution 64 c2ow8f_ not modelled 10.4 17 PDB header:ribosome Chain: F: PDB Molecule: PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa. 65 c3nj2B_ not modelled 10.1 21 PDB header:unknown function Chain: B: PDB Molecule:duf269-containing protein; PDBTitle: crystal structure of cce_0566 from the cyanobacterium cyanothece2 51142, a protein associated with nitrogen fixation from the duf2693 family 66 d1jaea2 not modelled 9.9 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 67 d1hz4a_ not modelled 9.8 17 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Transcription factor MalT domain III 68 c1ysjB_ not modelled 9.8 16 PDB header:hydrolase Chain: B: PDB Molecule:protein yxep; PDBTitle: crystal structure of bacillus subtilis yxep protein (apc1829), a2 dinuclear metal binding peptidase from m20 family 69 d1ua7a2 not modelled 9.7 25 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 70 c3faxA_ not modelled 9.7 18 PDB header:hydrolase Chain: A: PDB Molecule:reticulocyte binding protein; PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose 71 d1b74a1 not modelled 9.7 13 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 72 c3bbnE_ not modelled 9.4 11 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 73 c3e02A_ not modelled 9.4 13 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849; PDBTitle: crystal structure of a duf849 family protein (bxe_c0271) from2 burkholderia xenovorans lb400 at 1.90 a resolution 74 c1sp8A_ not modelled 9.3 25 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: 4-hydroxyphenylpyruvate dioxygenase 75 d1zbsa2 not modelled 9.1 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 76 c3e49A_ not modelled 9.1 16 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849 with a tim barrel fold; PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 with a tim barrel fold (bxe_c0966) from burkholderia xenovorans lb4003 at 1.75 a resolution 77 c3draA_ not modelled 9.0 11 PDB header:transferase Chain: A: PDB Molecule:protein PDBTitle: candida albicans protein geranylgeranyltransferase-i2 complexed with ggpp 78 d1ddga2 not modelled 8.9 15 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 79 c2qm2B_ not modelled 8.8 38 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative hopj type iii effector protein; PDBTitle: putative hopj type iii effector protein from vibrio parahaemolyticus 80 d1eeja2 not modelled 8.8 22 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 81 d1oqya1 not modelled 8.6 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 82 c2xevB_ not modelled 8.6 11 PDB header:metal binding Chain: B: PDB Molecule:ybgf; PDBTitle: crystal structure of the tpr domain of xanthomonas2 campestris ybgf 83 d3dhpa2 not modelled 8.6 25 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 84 c1sr9A_ not modelled 8.5 19 PDB header:transferase Chain: A: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of leua from mycobacterium tuberculosis 85 d1sp8a2 not modelled 8.5 25 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 86 c2cwbA_ not modelled 8.4 28 PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin 87 c3obhA_ not modelled 8.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: x-ray crystal structure of protein sp_0782 (7-79) from streptococcus2 pneumoniae. northeast structural genomics consortium target spr104 88 c2dnaA_ not modelled 8.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna 89 d1e43a2 not modelled 8.2 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 90 c3g7pA_ not modelled 8.2 21 PDB header:unknown function Chain: A: PDB Molecule:nitrogen fixation protein; PDBTitle: crystal structure of a nifx-associated protein of unknown function2 (afe_1514) from acidithiobacillus ferrooxidans atcc at 2.00 a3 resolution 91 d1myka_ not modelled 8.1 14 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 92 d2fi0a1 not modelled 8.1 15 Fold:SP0561-like Superfamily:SP0561-like Family:SP0561-like 93 d1ud2a2 not modelled 8.0 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 94 d1baza_ not modelled 8.0 14 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 95 c2vvyC_ not modelled 7.7 16 PDB header:viral protein Chain: C: PDB Molecule:protein b15; PDBTitle: structure of vaccinia virus protein b14 96 d1gjwa2 not modelled 7.6 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 97 c2dskA_ not modelled 7.6 25 PDB header:hydrolase Chain: A: PDB Molecule:chitinase; PDBTitle: crystal structure of catalytic domain of hyperthermophilic chitinase2 from pyrococcus furiosus 98 c2zfdB_ not modelled 7.6 12 PDB header:signaling protein/transferase Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90; PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14 99 c2epiA_ not modelled 7.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0045 protein mj1052; PDBTitle: crystal structure pf hypothetical protein mj1052 from2 methanocaldococcus jannascii (form 2)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0