Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	A	I	K	G	S	D	V	N	V	P	D	A	V	F	A	W	M	L	D	G	R	G	G	V	K	P	L	E	N	T	D	V	I	D	E	A	H	P	C	W	L	H	L	N	Y	V	H	H	D	S	A	Q	W	L	A	T	T	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	L	P	N	N	V	R	D	A	L	A	G	E	S	T	R	P	R	V	S	R	L	G	E	G	T	L	I	T	L	R	C	I	N	G	S	T	D	E	R	P	D	Q	L	V	A	M	R	V	Y	M	D	G	R	L	I	V	S	T	R
Secondary structure
SS confidence
Disorder																																						?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	R	K	V	L	A	L	D	D	V	V	S	D	L	E	E	G	T	G	P	T	D	C	G	G	W	L	V	D	V	C	D	A	L	T	D	H	S	S	E	F	I	E	Q	L	H	D	K	I	I	D	L	E	D	N	L	L	D	Q	Q
Secondary structure
SS confidence
Disorder					?												?	?	?	?	?																																						?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	P	P	R	G	F	L	A	L	L	R	K	Q	L	I	V	M	R	R	Y	M	A	P	Q	R	D	V	Y	A	R	L	A	S	E	R	L	P	W	M	S	D	D	Q	R	R	R	M	Q	D	I	A	D	R	L	G	R	G	L	D	E
Secondary structure
SS confidence
Disorder		?	?																																	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	D	A	C	I	A	R	T	G	V	M	A	D	E	I	A	Q	V	M	Q	E	N	L	A	R	R	T	Y	T	M	S	L	M	A	M	V	F	L	P	S	T	F	L	T	G	L	F	G	V	N	L	G	G	I	P	G	G	G	W	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Sequence		F	G	F	S	I	F	C	I	L	L	V	V	L	I	G	G	V	A	L	W	L	H	R	S	K	W	L
Secondary structure
SS confidence
Disorder																									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2bbj chain B Region: 2 - 325 Aligned: 317 Modelled: 324 Confidence: 100.0% Identity: 15% PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter Phyre2 PDB 3nwi chain C Region: 1 - 261 Aligned: 247 Modelled: 257 Confidence: 100.0% Identity: 90% PDB header:transport protein Chain: C: PDB Molecule:zinc transport protein zntb; PDBTitle: the soluble domain structure of the zntb zn2+ efflux system Phyre2 PDB 2iub chain A domain 1 Region: 2 - 261 Aligned: 260 Modelled: 260 Confidence: 100.0% Identity: 15% Fold: CorA soluble domain-like Superfamily: CorA soluble domain-like Family: CorA soluble domain-like Phyre2 PDB 3ck6 chain E Region: 14 - 262 Aligned: 240 Modelled: 238 Confidence: 100.0% Identity: 18% PDB header:structural protein Chain: E: PDB Molecule:putative membrane transport protein; PDBTitle: crystal structure of zntb cytoplasmic domain from vibrio2 parahaemolyticus rimd 2210633 Phyre2 PDB 2hn1 chain A Region: 3 - 239 Aligned: 234 Modelled: 237 Confidence: 100.0% Identity: 16% PDB header:metal transport Chain: A: PDB Molecule:magnesium and cobalt transporter; PDBTitle: crystal structure of a cora soluble domain from a. fulgidus in complex2 with co2+ Phyre2 PDB 2bbh chain A domain 1 Region: 3 - 220 Aligned: 209 Modelled: 218 Confidence: 100.0% Identity: 17% Fold: CorA soluble domain-like Superfamily: CorA soluble domain-like Family: CorA soluble domain-like Phyre2 PDB 2iub chain A domain 2 Region: 262 - 325 Aligned: 50 Modelled: 50 Confidence: 99.4% Identity: 18% Fold: Transmembrane helix hairpin Superfamily: Magnesium transport protein CorA, transmembrane region Family: Magnesium transport protein CorA, transmembrane region Phyre2 PDB 3cx5 chain D domain 2 Region: 295 - 326 Aligned: 32 Modelled: 32 Confidence: 64.2% Identity: 13% Fold: Single transmembrane helix Superfamily: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Phyre2 PDB 1ppj chain D domain 2 Region: 295 - 326 Aligned: 32 Modelled: 32 Confidence: 63.2% Identity: 19% Fold: Single transmembrane helix Superfamily: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Phyre2 PDB 3fse chain B Region: 147 - 245 Aligned: 99 Modelled: 99 Confidence: 33.0% Identity: 9% PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution Phyre2 PDB 1qcr chain D Region: 295 - 326 Aligned: 32 Modelled: 32 Confidence: 29.7% Identity: 19% PDB header: PDB COMPND: Phyre2 PDB 3cwb chain Q Region: 295 - 326 Aligned: 32 Modelled: 32 Confidence: 27.8% Identity: 19% PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d Phyre2 PDB 1p84 chain D Region: 295 - 326 Aligned: 32 Modelled: 32 Confidence: 27.3% Identity: 13% PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex Phyre2 PDB 2yiu chain E Region: 295 - 326 Aligned: 32 Modelled: 32 Confidence: 27.2% Identity: 6% PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution Phyre2 PDB 3dl8 chain H Region: 261 - 322 Aligned: 62 Modelled: 62 Confidence: 26.6% Identity: 13% PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca Phyre2 PDB 1ebo chain E Region: 155 - 241 Aligned: 87 Modelled: 87 Confidence: 25.1% Identity: 16% PDB header:viral protein Chain: E: PDB Molecule:ebola virus envelope protein chimera consisting PDBTitle: crystal structure of the ebola virus membrane-fusion2 subunit, gp2, from the envelope glycoprotein ectodomain Phyre2 PDB 3j01 chain A Region: 261 - 321 Aligned: 61 Modelled: 61 Confidence: 24.7% Identity: 18% PDB header:ribosome/ribosomal protein Chain: A: PDB Molecule:preprotein translocase secy subunit; PDBTitle: structure of the ribosome-secye complex in the membrane environment Phyre2 PDB 2fyn chain H Region: 295 - 326 Aligned: 32 Modelled: 32 Confidence: 23.7% Identity: 6% PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex Phyre2 PDB 3ghg chain K Region: 151 - 261 Aligned: 111 Modelled: 111 Confidence: 21.7% Identity: 10% PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen Phyre2 PDB 3tu8 chain A Region: 5 - 55 Aligned: 41 Modelled: 49 Confidence: 21.7% Identity: 27% PDB header:unknown function Chain: A: PDB Molecule:burkholderia lethal factor 1 (blf1); PDBTitle: crystal structure of the burkholderia lethal factor 1 (blf1) Phyre2 1 c2bbjB_ 2 c3nwiC_ 3 d2iuba1 4 c3ck6E_ 5 c2hn1A_ 6 d2bbha1 7 d2iuba2 8 d3cx5d2 9 d1ppjd2 10 c3fseB_ 11 c1qcrD_ 12 c3cwbQ_ 13 c1p84D_ 14 c2yiuE_ 15 c3dl8H_ 16 c1eboE_ 17 c3j01A_ 18 c2fynH_ 19 c3ghgK_ 20 c3tu8A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2bbjB_ 100.0 15 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 2 c3nwiC_ 100.0 90 PDB header:transport protein Chain: C: PDB Molecule:zinc transport protein zntb; PDBTitle: the soluble domain structure of the zntb zn2+ efflux system 3 d2iuba1 100.0 15 Fold:CorA soluble domain-like Superfamily:CorA soluble domain-like Family:CorA soluble domain-like 4 c3ck6E_ 100.0 18 PDB header:structural protein Chain: E: PDB Molecule:putative membrane transport protein; PDBTitle: crystal structure of zntb cytoplasmic domain from vibrio2 parahaemolyticus rimd 2210633 5 c2hn1A_ 100.0 16 PDB header:metal transport Chain: A: PDB Molecule:magnesium and cobalt transporter; PDBTitle: crystal structure of a cora soluble domain from a. fulgidus in complex2 with co2+ 6 d2bbha1 100.0 17 Fold:CorA soluble domain-like Superfamily:CorA soluble domain-like Family:CorA soluble domain-like 7 d2iuba2 99.4 18 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 8 d3cx5d2 64.2 13 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 9 d1ppjd2 63.2 19 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 10 c3fseB_ 33.0 9 PDB header:hydrolase Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution 11 c1qcrD_ 29.7 19 PDB header: PDB COMPND: 12 c3cwbQ_ 27.8 19 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 13 c1p84D_ 27.3 13 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 14 c2yiuE_ 27.2 6 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution 15 c3dl8H_ 26.6 13 PDB header:protein transport Chain: H: PDB Molecule:preprotein translocase subunit secy; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 16 c1eboE_ 25.1 16 PDB header:viral protein Chain: E: PDB Molecule:ebola virus envelope protein chimera consisting PDBTitle: crystal structure of the ebola virus membrane-fusion2 subunit, gp2, from the envelope glycoprotein ectodomain 17 c3j01A_ 24.7 18 PDB header:ribosome/ribosomal protein Chain: A: PDB Molecule:preprotein translocase secy subunit; PDBTitle: structure of the ribosome-secye complex in the membrane environment 18 c2fynH_ 23.7 6 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 19 c3ghgK_ 21.7 10 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 20 c3tu8A_ 21.7 27 PDB header:unknown function Chain: A: PDB Molecule:burkholderia lethal factor 1 (blf1); PDBTitle: crystal structure of the burkholderia lethal factor 1 (blf1) 21 c1zrtD_ not modelled 20.7 9 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 22 c3mkuA_ not modelled 18.7 13 PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter 23 c1s1iJ_ not modelled 18.6 43 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 24 c2akiY_ not modelled 17.9 18 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: normal mode-based flexible fitted coordinates of a2 translocating secyeg protein-conducting channel into the3 cryo-em map of a secyeg-nascent chain-70s ribosome complex4 from e. coli 25 c4a1cD_ not modelled 16.0 44 PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l11; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 26 d1iwga8 not modelled 15.2 11 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 27 c3rfuC_ not modelled 15.2 10 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 28 d1e52a_ not modelled 14.8 27 Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB 29 d2d69a2 not modelled 14.7 20 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 30 c1dkgB_ not modelled 14.4 18 PDB header:complex (hsp24/hsp70) Chain: B: PDB Molecule:nucleotide exchange factor grpe; PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak 31 c1oy8A_ not modelled 13.6 24 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 32 d1svda2 not modelled 12.8 33 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 33 c1ei3E_ not modelled 12.8 11 PDB header: PDB COMPND: 34 c2ks1B_ not modelled 12.7 29 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 35 c2cpbA_ not modelled 12.4 9 PDB header:viral protein Chain: A: PDB Molecule:m13 major coat protein; PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures 36 c2akfC_ not modelled 11.6 12 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 37 c2akfB_ not modelled 11.6 12 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 38 c2akfA_ not modelled 11.6 12 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 39 d1bxna2 not modelled 11.5 13 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 40 d1tqga_ not modelled 11.5 14 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Chemotaxis protein CheA P1 domain 41 d1i6za_ not modelled 10.7 6 Fold:Spectrin repeat-like Superfamily:BAG domain Family:BAG domain 42 d1wh5a_ not modelled 9.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 43 d2p61a1 not modelled 9.6 12 Fold:Four-helical up-and-down bundle Superfamily:TM1646-like Family:TM1646-like 44 c2xzm7_ not modelled 9.4 20 PDB header:ribosome Chain: 7: PDB Molecule:plectin/s10 domain containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 45 c3qthA_ not modelled 9.3 14 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical dinb-like protein (cps_3021) from2 colwellia psychrerythraea 34h at 2.20 a resolution 46 c2p61A_ not modelled 9.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tm_1646; PDBTitle: crystal structure of protein tm1646 from thermotoga2 maritima, pfam duf327 47 c3dinF_ not modelled 8.8 18 PDB header:membrane protein, protein transport Chain: F: PDB Molecule:preprotein translocase subunit secy; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 48 c2zqpY_ not modelled 8.8 16 PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: crystal structure of secye translocon from thermus2 thermophilus 49 c1w5kB_ not modelled 8.6 24 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 50 c1w5kC_ not modelled 8.6 24 PDB header:four helix bundle Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 51 c1w5kA_ not modelled 8.6 24 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 52 c1w5kD_ not modelled 8.6 24 PDB header:four helix bundle Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: an anti-parallel four helix bundle 53 c3kyiA_ not modelled 8.6 14 PDB header:transferase Chain: A: PDB Molecule:putative histidine protein kinase; PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides 54 d1rzhh2 not modelled 8.5 36 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 55 d2c2aa1 not modelled 8.5 5 Fold:ROP-like Superfamily:Homodimeric domain of signal transducing histidine kinase Family:Homodimeric domain of signal transducing histidine kinase 56 c2qupA_ not modelled 8.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh1478 protein; PDBTitle: crystal structure of uncharacterized protein bh1478 from bacillus2 halodurans 57 c3u5gK_ not modelled 8.1 16 PDB header:ribosome Chain: K: PDB Molecule:40s ribosomal protein s10-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 58 d1l9bh2 not modelled 7.9 36 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 59 c2oszA_ not modelled 7.9 13 PDB header:structural protein Chain: A: PDB Molecule:nucleoporin p58/p45; PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding 60 d1oe4a_ not modelled 7.9 43 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 61 d1qoja_ not modelled 7.7 28 Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB 62 c1htjF_ not modelled 7.6 12 PDB header:signaling protein Chain: F: PDB Molecule:kiaa0380; PDBTitle: structure of the rgs-like domain from pdz-rhogef 63 d1htjf_ not modelled 7.6 12 Fold:Regulator of G-protein signaling, RGS Superfamily:Regulator of G-protein signaling, RGS Family:Regulator of G-protein signaling, RGS 64 d1wpga4 not modelled 7.6 8 Fold:Calcium ATPase, transmembrane domain M Superfamily:Calcium ATPase, transmembrane domain M Family:Calcium ATPase, transmembrane domain M 65 c2oltB_ not modelled 7.6 13 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a phou-like protein (so_3770) from shewanella2 oneidensis mr-1 at 2.00 a resolution 66 d1wi3a_ not modelled 7.6 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 67 c2y69Y_ not modelled 7.6 13 PDB header:electron transport Chain: Y: PDB Molecule:cytochrome c oxidase subunit 7c; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 68 c3c0uA_ not modelled 7.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yaeq; PDBTitle: crystal structure of e.coli yaeq protein 69 d1u5pa1 not modelled 7.4 14 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 70 d1mh3a1 not modelled 7.4 4 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 71 c3ixzA_ not modelled 7.3 9 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 72 c2dceA_ not modelled 7.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:kiaa1915 protein; PDBTitle: solution structure of the swirm domain of human kiaa19152 protein 73 d1i5na_ not modelled 7.3 14 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:Chemotaxis protein CheA P1 domain 74 c2lchA_ not modelled 7.2 15 PDB header:de novo protein Chain: A: PDB Molecule:protein or38; PDBTitle: solution nmr structure of a protein with a redesigned hydrophobic2 core, northeast structural genomics consortium target or38 75 c1s94A_ not modelled 7.2 11 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:s-syntaxin; PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei 76 d1s94a_ not modelled 7.2 11 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 77 d1h9aa2 not modelled 7.2 13 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Glucose 6-phosphate dehydrogenase-like 78 c1kmiZ_ not modelled 7.2 9 PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez 79 c3qnqD_ not modelled 7.1 20 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 80 c2wwbA_ not modelled 7.1 11 PDB header:ribosome Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 81 c3r1fO_ not modelled 7.1 11 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 82 d1uhsa_ not modelled 7.0 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 83 d9anta_ not modelled 7.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 84 d1e3oc1 not modelled 6.9 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 85 d1s35a2 not modelled 6.9 8 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 86 d1d6za4 not modelled 6.8 25 Fold:N domain of copper amine oxidase-like Superfamily:Copper amine oxidase, domain N Family:Copper amine oxidase, domain N 87 d8ruca2 not modelled 6.8 13 Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase 88 c2vi6F_ not modelled 6.7 17 PDB header:transcription Chain: F: PDB Molecule:homeobox protein nanog; PDBTitle: crystal structure of the nanog homeodomain 89 d2rcrh2 not modelled 6.7 36 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 90 c1nfoA_ not modelled 6.7 4 PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein e2; PDBTitle: apolipoprotein e2 (apoe2, d154a mutation) 91 c3movB_ not modelled 6.7 24 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment 92 c3b8eC_ not modelled 6.6 13 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 93 d1eysh2 not modelled 6.6 25 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 94 c1gk4A_ not modelled 6.5 19 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 95 d1riqa1 not modelled 6.5 12 Fold:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Superfamily:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Family:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 96 d1le8a_ not modelled 6.4 4 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 97 c3a7pB_ not modelled 6.4 15 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 98 c2l2tA_ not modelled 6.4 21 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 99 d1du0a_ not modelled 6.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0