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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2wwbA_

Fold library idPDB HeaderMoleculeTitle
c2wwbA_PDB header: ribosomeChain: A: PDB Molecule: protein transport protein sec61 subunit alphaPDBTitle: cryo-em structure of the mammalian sec61 complex2 bound to the actively translating wheat germ 80s ribosome


Added to library: Sat Aug 28 19:26:19 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILA
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Known secondary structure (DSSP)

S





S










S


SSSTTT
S



 .........80.........90.........100.........110.........120.........130.........140
Sequence SNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDP
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Known secondary structure (DSSP) SS
SSS
SSSST


S

SSSS
SS
TSS

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence SEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFE
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Known secondary structure (DSSP) S
S
TTT
SS
ST

SS
S


S

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence GAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYP
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Known secondary structure (DSSP) TT


T
TTSSSSSS
SSSSS

B




B
SSSSB
S


 .........290.........300.........310.........320.........330.........340.........350
Sequence IKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPES
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Known secondary structure (DSSP) B
TTTSSTS

S

SSSTT
S
TTSSS

SSSTS

SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence FGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA
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Known secondary structure (DSSP) SSS


SSTTTSS


TTT



TTTTT
 .........430.........440.........450.........460.........470......
Sequence AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF
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Known secondary structure (DSSP)

SS
T

SS


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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