Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	T	F	K	P	L	K	T	L	T	S	R	R	Q	V	L	K	A	G	L	A	A	L	T	L	S	G	M	S	Q	A	I	A	K	D	E	L	L	K	T	S	N	G	H	S	K	P	K	A	K	K	S	G	G	K	R	V	V	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	D	P	G	H	G	G	I	D	T	G	A	I	G	R	N	G	S	K	E	K	H	V	V	L	A	I	A	K	N	V	R	S	I	L	R	N	H	G	I	D	A	R	L	T	R	S	G	D	T	F	I	P	L	Y	D	R	V	E	I
Secondary structure
SS confidence
Disorder														?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	H	K	H	G	A	D	L	F	M	S	I	H	A	D	G	F	T	N	P	K	A	A	G	A	S	V	F	A	L	S	N	R	G	A	S	S	A	M	A	K	Y	L	S	E	R	E	N	R	A	D	E	V	A	G	K	K	A	T	D
Secondary structure
SS confidence
Disorder																				?	?													?	?	?	?	?										?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	D	H	L	L	Q	Q	V	L	F	D	L	V	Q	T	D	T	I	K	N	S	L	T	L	G	S	H	I	L	K	K	I	K	P	V	H	K	L	H	S	R	N	T	E	Q	A	A	F	V	V	L	K	S	P	S	V	P	S	V	L
Secondary structure
SS confidence
Disorder		?	?	?	?										?	?																				?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Sequence		V	E	T	S	F	I	T	N	P	E	E	E	R	L	L	G	T	A	A	F	R	Q	K	I	A	T	A	I	A	E	G	V	I	S	Y	F	H	W	F	D	N	Q	K	A	H	S	K	K	R
Secondary structure
SS confidence
Disorder																?	?	?																								?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ne8 chain A Region: 55 - 283 Aligned: 221 Modelled: 228 Confidence: 100.0% Identity: 38% PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of a domain from n-acetylmuramoyl-l-alanine2 amidase of bartonella henselae str. houston-1 Phyre2 PDB 1jwq chain A Region: 57 - 279 Aligned: 176 Modelled: 176 Confidence: 100.0% Identity: 37% Fold: Phosphorylase/hydrolase-like Superfamily: Zn-dependent exopeptidases Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 1xov chain A Region: 58 - 276 Aligned: 169 Modelled: 174 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:ply protein; PDBTitle: the crystal structure of the listeria monocytogenes bacteriophage psa2 endolysin plypsa Phyre2 PDB 3czx chain A Region: 55 - 276 Aligned: 169 Modelled: 170 Confidence: 100.0% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:putative n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of the putative n-acetylmuramoyl-l-2 alanine amidase from neisseria meningitidis Phyre2 PDB 1xov chain A domain 2 Region: 57 - 273 Aligned: 167 Modelled: 172 Confidence: 100.0% Identity: 24% Fold: Phosphorylase/hydrolase-like Superfamily: Zn-dependent exopeptidases Family: N-acetylmuramoyl-L-alanine amidase-like Phyre2 PDB 3qay chain C Region: 56 - 275 Aligned: 169 Modelled: 173 Confidence: 100.0% Identity: 23% PDB header:lyase Chain: C: PDB Molecule:endolysin; PDBTitle: catalytic domain of cd27l endolysin targeting clostridia difficile Phyre2 PDB 2qvp chain C Region: 50 - 269 Aligned: 177 Modelled: 182 Confidence: 86.8% Identity: 19% PDB header:hydrolase Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative metallopeptidase (sama_0725) from2 shewanella amazonensis sb2b at 2.00 a resolution Phyre2 PDB 1nyr chain A domain 1 Region: 81 - 132 Aligned: 49 Modelled: 52 Confidence: 77.7% Identity: 10% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 2gfq chain C Region: 235 - 275 Aligned: 36 Modelled: 41 Confidence: 72.2% Identity: 25% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0204 protein ph0006; PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii Phyre2 PDB 1yqe chain A domain 1 Region: 235 - 272 Aligned: 33 Modelled: 38 Confidence: 64.1% Identity: 21% Fold: Phosphorylase/hydrolase-like Superfamily: AF0625-like Family: AF0625-like Phyre2 PDB 2fuv chain B Region: 56 - 136 Aligned: 62 Modelled: 62 Confidence: 62.7% Identity: 24% PDB header:isomerase Chain: B: PDB Molecule:phosphoglucomutase; PDBTitle: phosphoglucomutase from salmonella typhimurium. Phyre2 PDB 1nj1 chain A domain 1 Region: 80 - 132 Aligned: 50 Modelled: 53 Confidence: 61.3% Identity: 22% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 3l2n chain A Region: 119 - 279 Aligned: 128 Modelled: 132 Confidence: 60.8% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:peptidase m14, carboxypeptidase a; PDBTitle: crystal structure of putative carboxypeptidase a (yp_562911.1) from2 shewanella denitrificans os-217 at 2.39 a resolution Phyre2 PDB 1wu7 chain A domain 1 Region: 85 - 132 Aligned: 45 Modelled: 47 Confidence: 59.6% Identity: 20% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 2g4c chain A domain 1 Region: 86 - 132 Aligned: 47 Modelled: 47 Confidence: 59.5% Identity: 9% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 2gfq chain A domain 1 Region: 203 - 275 Aligned: 68 Modelled: 70 Confidence: 58.9% Identity: 19% Fold: Phosphorylase/hydrolase-like Superfamily: AF0625-like Family: AF0625-like Phyre2 PDB 1nj2 chain A Region: 65 - 132 Aligned: 65 Modelled: 68 Confidence: 57.2% Identity: 22% PDB header:ligase Chain: A: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus Phyre2 PDB 1qf6 chain A domain 1 Region: 82 - 132 Aligned: 48 Modelled: 51 Confidence: 56.9% Identity: 8% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 1qe0 chain A domain 1 Region: 84 - 132 Aligned: 46 Modelled: 49 Confidence: 50.7% Identity: 22% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 2vef chain B Region: 59 - 104 Aligned: 34 Modelled: 46 Confidence: 50.1% Identity: 35% PDB header:transferase Chain: B: PDB Molecule:dihydropteroate synthase; PDBTitle: dihydropteroate synthase from streptococcus pneumoniae Phyre2 1 c3ne8A_ 2 d1jwqa_ 3 c1xovA_ 4 c3czxA_ 5 d1xova2 6 c3qayC_ 7 c2qvpC_ 8 d1nyra1 9 c2gfqC_ 10 d1yqea1 11 c2fuvB_ 12 d1nj1a1 13 c3l2nA_ 14 d1wu7a1 15 d2g4ca1 16 d2gfqa1 17 c1nj2A_ 18 d1qf6a1 19 d1qe0a1 20 c2vefB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ne8A_ 100.0 38 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of a domain from n-acetylmuramoyl-l-alanine2 amidase of bartonella henselae str. houston-1 2 d1jwqa_ 100.0 37 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:N-acetylmuramoyl-L-alanine amidase-like 3 c1xovA_ 100.0 24 PDB header:hydrolase Chain: A: PDB Molecule:ply protein; PDBTitle: the crystal structure of the listeria monocytogenes bacteriophage psa2 endolysin plypsa 4 c3czxA_ 100.0 25 PDB header:hydrolase Chain: A: PDB Molecule:putative n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of the putative n-acetylmuramoyl-l-2 alanine amidase from neisseria meningitidis 5 d1xova2 100.0 24 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:N-acetylmuramoyl-L-alanine amidase-like 6 c3qayC_ 100.0 23 PDB header:lyase Chain: C: PDB Molecule:endolysin; PDBTitle: catalytic domain of cd27l endolysin targeting clostridia difficile 7 c2qvpC_ 86.8 19 PDB header:hydrolase Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative metallopeptidase (sama_0725) from2 shewanella amazonensis sb2b at 2.00 a resolution 8 d1nyra1 77.7 10 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 9 c2gfqC_ 72.2 25 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0204 protein ph0006; PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii 10 d1yqea1 64.1 21 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 11 c2fuvB_ 62.7 24 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucomutase; PDBTitle: phosphoglucomutase from salmonella typhimurium. 12 d1nj1a1 61.3 22 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 13 c3l2nA_ 60.8 16 PDB header:hydrolase Chain: A: PDB Molecule:peptidase m14, carboxypeptidase a; PDBTitle: crystal structure of putative carboxypeptidase a (yp_562911.1) from2 shewanella denitrificans os-217 at 2.39 a resolution 14 d1wu7a1 59.6 20 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 15 d2g4ca1 59.5 9 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 16 d2gfqa1 58.9 19 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 17 c1nj2A_ 57.2 22 PDB header:ligase Chain: A: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus 18 d1qf6a1 56.9 8 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 19 d1qe0a1 50.7 22 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 20 c2vefB_ 50.1 35 PDB header:transferase Chain: B: PDB Molecule:dihydropteroate synthase; PDBTitle: dihydropteroate synthase from streptococcus pneumoniae 21 c3bghB_ not modelled 49.6 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative neuraminyllactose-binding hemagglutinin homolog; PDBTitle: crystal structure of putative neuraminyllactose-binding hemagglutinin2 homolog from helicobacter pylori 22 d1nj8a1 not modelled 48.3 16 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 23 c1b74A_ not modelled 47.3 23 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus 24 c1u83A_ not modelled 45.6 16 PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis 25 d1u83a_ not modelled 45.6 16 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 26 c1y80A_ not modelled 44.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 27 c2jfoB_ not modelled 43.6 21 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate 28 c2dlnA_ not modelled 43.4 26 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 29 c3outC_ not modelled 43.4 24 PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate. 30 d1g5ha1 not modelled 43.3 10 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 31 c2i4lC_ not modelled 43.1 17 PDB header:ligase Chain: C: PDB Molecule:proline-trna ligase; PDBTitle: rhodopseudomonas palustris prolyl-trna synthetase 32 d1b74a1 not modelled 42.7 23 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 33 c3i3wB_ not modelled 42.1 28 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis 34 d1ccwa_ not modelled 41.8 17 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 35 c3na6A_ not modelled 41.7 12 PDB header:hydrolase Chain: A: PDB Molecule:succinylglutamate desuccinylase/aspartoacylase; PDBTitle: crystal structure of a succinylglutamate desuccinylase (tm1040_2694)2 from silicibacter sp. tm1040 at 2.00 a resolution 36 c2yxbA_ not modelled 40.3 25 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 37 d3bula2 not modelled 39.7 18 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 38 c2jfqA_ not modelled 39.7 24 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of staphylococcus aureus glutamate2 racemase in complex with d-glutamate 39 c3fs2A_ not modelled 36.9 32 PDB header:transferase Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate2 aldolase from bruciella melitensis at 1.85a resolution 40 c3nh8A_ not modelled 36.1 12 PDB header:hydrolase Chain: A: PDB Molecule:aspartoacylase-2; PDBTitle: crystal structure of murine aminoacylase 3 in complex with n-acetyl-s-2 1,2-dichlorovinyl-l-cysteine 41 d2naca2 not modelled 35.7 25 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 42 d1fmfa_ not modelled 34.9 16 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 43 c2jfzB_ not modelled 34.5 21 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor 44 c3netB_ not modelled 34.5 22 PDB header:ligase Chain: B: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of histidyl-trna synthetase from nostoc sp. pcc 7120 45 c1fyfB_ not modelled 34.0 9 PDB header:ligase Chain: B: PDB Molecule:threonyl-trna synthetase; PDBTitle: crystal structure of a truncated form of threonyl-trna2 synthetase complexed with a seryl adenylate analog 46 c2gzmB_ not modelled 33.8 22 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of the glutamate racemase from bacillus2 anthracis 47 c3hriF_ not modelled 33.2 18 PDB header:ligase Chain: F: PDB Molecule:histidyl-trna synthetase; PDBTitle: histidyl-trna synthetase (apo) from trypanosoma brucei 48 c1wwpA_ not modelled 32.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha0636; PDBTitle: crystal structure of ttk003001694 from thermus thermophilus2 hb8 49 c2e85B_ not modelled 32.7 28 PDB header:hydrolase Chain: B: PDB Molecule:hydrogenase 3 maturation protease; PDBTitle: crystal structure of the hydrogenase 3 maturation protease 50 c2j3mA_ not modelled 32.1 10 PDB header:ligase Chain: A: PDB Molecule:prolyl-trna synthetase; PDBTitle: prolyl-trna synthetase from enterococcus faecalis complexed2 with atp, manganese and prolinol 51 c2vavL_ not modelled 31.1 13 PDB header:transferase Chain: L: PDB Molecule:acetyl-coa--deacetylcephalosporin c PDBTitle: crystal structure of deacetylcephalosporin c2 acetyltransferase (dac-soak) 52 c1atiA_ not modelled 30.0 13 PDB header:protein biosynthesis Chain: A: PDB Molecule:glycyl-trna synthetase; PDBTitle: crystal structure of glycyl-trna synthetase from thermus thermophilus 53 c1g5hA_ not modelled 29.0 10 PDB header:dna binding protein Chain: A: PDB Molecule:mitochondrial dna polymerase accessory subunit; PDBTitle: crystal structure of the accessory subunit of murine mitochondrial2 polymerase gamma 54 c1wu7A_ not modelled 28.9 20 PDB header:ligase Chain: A: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of histidyl-trna synthetase from2 thermoplasma acidophilum 55 c3l80A_ not modelled 28.5 14 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein smu.1393c; PDBTitle: crystal structure of smu.1393c from streptococcus mutans ua159 56 c3k2kA_ not modelled 28.2 17 PDB header:hydrolase Chain: A: PDB Molecule:putative carboxypeptidase; PDBTitle: crystal structure of putative carboxypeptidase (yp_103406.1) from2 burkholderia mallei atcc 23344 at 2.49 a resolution 57 c2hkoA_ not modelled 27.6 26 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1 58 c2ronA_ not modelled 26.7 36 PDB header:hydrolase Chain: A: PDB Molecule:surfactin synthetase thioesterase subunit; PDBTitle: the external thioesterase of the surfactin-synthetase 59 d1ad1a_ not modelled 26.6 63 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 60 c1ggmB_ not modelled 26.3 13 PDB header:ligase Chain: B: PDB Molecule:protein (glycyl-trna synthetase); PDBTitle: glycyl-trna synthetase from thermus thermophilus complexed with2 glycyl-adenylate 61 c2an1D_ not modelled 26.2 16 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 62 c3hfrA_ not modelled 26.1 23 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from listeria monocytogenes 63 c3rfqC_ not modelled 25.4 18 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 64 c3i1iA_ not modelled 25.3 18 PDB header:transferase Chain: A: PDB Molecule:homoserine o-acetyltransferase; PDBTitle: x-ray crystal structure of homoserine o-acetyltransferase from2 bacillus anthracis 65 c3s29C_ not modelled 25.1 29 PDB header:transferase Chain: C: PDB Molecule:sucrose synthase 1; PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications. 66 d1kfia2 not modelled 23.9 29 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 67 d1iowa1 not modelled 23.3 30 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 68 c3a32A_ not modelled 22.6 15 PDB header:ligase Chain: A: PDB Molecule:probable threonyl-trna synthetase 1; PDBTitle: crystal structure of putative threonyl-trna synthetase2 thrrs-1 from aeropyrum pernix 69 c2ohoA_ not modelled 22.6 18 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: structural basis for glutamate racemase inhibitor 70 c3ezxA_ not modelled 22.0 19 PDB header:transferase Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein 71 d1ztca1 not modelled 21.7 25 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:TM0894-like 72 c1nyqA_ not modelled 21.2 11 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase 1; PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate 73 c2y5sA_ not modelled 21.1 50 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 74 c3ibtA_ not modelled 20.9 20 PDB header:oxidoreductase Chain: A: PDB Molecule:1h-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; PDBTitle: structure of 1h-3-hydroxy-4-oxoquinoline 2,4-dioxygenase (qdo) 75 c2dwuA_ not modelled 19.8 22 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis 76 c2vf7B_ not modelled 19.8 29 PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans 77 c2dzaA_ not modelled 19.5 88 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of dihydropteroate synthase from thermus2 thermophilus hb8 in complex with 4-aminobenzoate 78 d1atia1 not modelled 18.9 13 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 79 c1qe0B_ not modelled 18.9 22 PDB header:ligase Chain: B: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of apo s. aureus histidyl-trna synthetase 80 c1nj8C_ not modelled 18.3 16 PDB header:ligase Chain: C: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from2 methanocaldococcus janaschii 81 c2dkdA_ not modelled 18.3 17 PDB header:isomerase Chain: A: PDB Molecule:phosphoacetylglucosamine mutase; PDBTitle: crystal structure of n-acetylglucosamine-phosphate mutase,2 a member of the alpha-d-phosphohexomutase superfamily, in3 the product complex 82 c1qf6A_ not modelled 18.3 10 PDB header:ligase/rna Chain: A: PDB Molecule:threonyl-trna synthetase; PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna 83 c2jfnA_ not modelled 17.7 24 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of escherichia coli glutamate racemase2 in complex with l-glutamate and activator udp-murnac-ala 84 d1rz3a_ not modelled 17.6 26 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 85 d1mdah_ not modelled 17.5 16 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 86 c2vp8A_ not modelled 17.3 50 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 87 d2vata1 not modelled 17.1 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase 88 d1eyea_ not modelled 17.0 75 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 89 d2grea2 not modelled 16.8 9 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 90 c2i80B_ not modelled 16.5 21 PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies 91 d1c4xa_ not modelled 16.5 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carbon-carbon bond hydrolase 92 c1tx2A_ not modelled 16.3 63 PDB header:transferase Chain: A: PDB Molecule:dhps, dihydropteroate synthase; PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis 93 d1tx2a_ not modelled 16.3 63 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 94 d1vixa1 not modelled 16.3 9 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 95 c2i9iA_ not modelled 16.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of helicobacter pylori protein hp0492 96 d2i9ia1 not modelled 16.3 10 Fold:Anticodon-binding domain-like Superfamily:XCC0632-like Family:NLBH-like 97 c1k8wA_ not modelled 16.2 55 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 98 c2i2xO_ not modelled 15.9 16 PDB header:transferase Chain: O: PDB Molecule:methyltransferase 1; PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri 99 c2pmfA_ not modelled 15.8 18 PDB header:ligase Chain: A: PDB Molecule:glycyl-trna synthetase; PDBTitle: the crystal structure of a human glycyl-trna synthetase mutant

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0